Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706000 | XP_003630391.1 | 93.489 | 599 | 7 | 1 | 1 | 567 | 1 | 599 | 0.0 | 1147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706000 | sp|Q9STW5|MACP2_ARATH | 63.529 | 595 | 177 | 7 | 9 | 566 | 10 | 601 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706000 | G7LFS3 | 93.489 | 599 | 7 | 1 | 1 | 567 | 1 | 599 | 0.0 | 1147 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0706000 | Msa1301120 | 0.813160 | 2.945266e-51 | -8.615850e-47 |
| Msa0706000 | Msa1421030 | 0.806864 | 6.688565e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706000 | MtrunA17_Chr8g0385121 | 93.489 | 599 | 7 | 1 | 1 | 567 | 1 | 599 | 0.0 | 1147 |
| Msa0706000 | MtrunA17_Chr2g0277061 | 65.025 | 589 | 165 | 7 | 10 | 560 | 12 | 597 | 0.0 | 770 |
| Msa0706000 | MtrunA17_Chr4g0046841 | 49.835 | 606 | 249 | 10 | 8 | 565 | 20 | 618 | 0.0 | 566 |
| Msa0706000 | MtrunA17_Chr8g0385131 | 48.084 | 574 | 273 | 10 | 9 | 567 | 12 | 575 | 5.99e-175 | 507 |
| Msa0706000 | MtrunA17_Chr8g0385181 | 46.004 | 563 | 270 | 9 | 9 | 558 | 12 | 553 | 2.69e-164 | 479 |
| Msa0706000 | MtrunA17_Chr8g0391931 | 45.656 | 587 | 275 | 10 | 10 | 556 | 6 | 588 | 3.07e-164 | 480 |
| Msa0706000 | MtrunA17_Chr8g0377631 | 43.699 | 611 | 272 | 14 | 13 | 556 | 11 | 616 | 7.00e-162 | 475 |
| Msa0706000 | MtrunA17_Chr3g0122211 | 43.564 | 606 | 275 | 13 | 13 | 556 | 17 | 617 | 3.26e-161 | 473 |
| Msa0706000 | MtrunA17_Chr2g0284691 | 41.652 | 569 | 281 | 12 | 14 | 557 | 23 | 565 | 9.10e-135 | 404 |
| Msa0706000 | MtrunA17_Chr4g0013011 | 37.248 | 596 | 303 | 11 | 9 | 556 | 10 | 582 | 2.84e-124 | 377 |
| Msa0706000 | MtrunA17_Chr8g0385161 | 48.561 | 278 | 112 | 6 | 288 | 563 | 1 | 249 | 8.42e-75 | 238 |
| Msa0706000 | MtrunA17_Chr8g0385171 | 43.403 | 288 | 143 | 9 | 9 | 284 | 12 | 291 | 1.31e-67 | 221 |
| Msa0706000 | MtrunA17_Chr7g0274871 | 48.966 | 145 | 66 | 3 | 8 | 150 | 125 | 263 | 1.42e-32 | 126 |
| Msa0706000 | MtrunA17_Chr8g0385141 | 46.535 | 101 | 49 | 2 | 114 | 209 | 11 | 111 | 7.47e-23 | 95.9 |
| Msa0706000 | MtrunA17_Chr7g0274901 | 47.059 | 85 | 44 | 1 | 330 | 413 | 1 | 85 | 6.61e-17 | 75.9 |
| Msa0706000 | MtrunA17_Chr8g0385151 | 56.250 | 48 | 21 | 0 | 238 | 285 | 1 | 48 | 8.56e-15 | 68.6 |
| Msa0706000 | MtrunA17_Chr7g0274911 | 39.286 | 112 | 57 | 4 | 459 | 564 | 2 | 108 | 1.40e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706000 | AT4G24290.2 | 63.529 | 595 | 177 | 7 | 9 | 566 | 10 | 601 | 0.0 | 757 |
| Msa0706000 | AT4G24290.3 | 63.529 | 595 | 177 | 7 | 9 | 566 | 10 | 601 | 0.0 | 757 |
| Msa0706000 | AT1G28380.1 | 49.085 | 601 | 254 | 10 | 9 | 562 | 14 | 609 | 0.0 | 535 |
| Msa0706000 | AT1G14780.1 | 42.020 | 614 | 285 | 14 | 10 | 556 | 9 | 618 | 1.83e-154 | 457 |
| Msa0706000 | AT1G29690.1 | 41.497 | 588 | 270 | 11 | 2 | 556 | 13 | 559 | 1.61e-142 | 424 |
| Msa0706000 | AT4G24290.1 | 56.402 | 328 | 103 | 6 | 9 | 297 | 10 | 336 | 3.47e-118 | 354 |
Find 169 sgRNAs with CRISPR-Local
Find 425 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCATGCAAACAATGAAAA+AGG | 0.151527 | 4_4:-78885131 | Msa0706000:three_prime_UTR |
| TCTCTACTTGGTGGAATAAA+TGG | 0.173122 | 4_4:-78887604 | Msa0706000:CDS |
| ACATTTGCTCTATTCATTAT+AGG | 0.190531 | 4_4:-78885319 | Msa0706000:three_prime_UTR |
| TTCAGGTTCATTGAGAAATA+TGG | 0.209882 | 4_4:-78889032 | Msa0706000:intron |
| AACAGGCCTTCGATTGTATT+TGG | 0.219951 | 4_4:-78886082 | Msa0706000:CDS |
| ACATCGTAAATAGAGATTTA+TGG | 0.220471 | 4_4:+78887561 | None:intergenic |
| AGGCAATGGGCCCCTGTATT+TGG | 0.223085 | 4_4:-78886794 | Msa0706000:CDS |
| TTTATCACAATTGATAGATT+TGG | 0.225168 | 4_4:+78890557 | None:intergenic |
| TACCTACACAACATATCTTT+TGG | 0.246478 | 4_4:-78885263 | Msa0706000:three_prime_UTR |
| GGACAGCACTTTCTTCTTAC+TGG | 0.246781 | 4_4:+78890734 | None:intergenic |
| CTTCGTACTGTTGAGCTTCC+TGG | 0.257797 | 4_4:-78890603 | Msa0706000:CDS |
| CACAAGATTTGCCTGGTTAC+TGG | 0.270535 | 4_4:-78885549 | Msa0706000:CDS |
| TCCTGCAGTTGGAATGTCTT+AGG | 0.286470 | 4_4:+78886006 | None:intergenic |
| ATCTTTACAGTTCAGTTTCA+TGG | 0.289052 | 4_4:-78886726 | Msa0706000:CDS |
| CCTGGTTACTGGGTTGTGTC+GGG | 0.291638 | 4_4:-78885538 | Msa0706000:CDS |
| GCTGTAGTTGGGGTGAAAAT+AGG | 0.301197 | 4_4:-78889002 | Msa0706000:CDS |
| CTGTAGTTGGGGTGAAAATA+GGG | 0.304438 | 4_4:-78889001 | Msa0706000:CDS |
| TCAACAAACTTCAGAAGTTT+AGG | 0.306525 | 4_4:+78885595 | None:intergenic |
| GTGATTAAATCCGTTGGATT+AGG | 0.310161 | 4_4:-78890702 | Msa0706000:CDS |
| CACTTTGAAGTGGGAGAAAC+TGG | 0.314393 | 4_4:-78885850 | Msa0706000:CDS |
| AAATCTATCAATTGTGATAA+AGG | 0.315125 | 4_4:-78890555 | Msa0706000:CDS |
| GAAAGCGTCCAAGGATGTTT+AGG | 0.323145 | 4_4:+78890888 | None:intergenic |
| TTATCACAATTGATAGATTT+GGG | 0.323441 | 4_4:+78890558 | None:intergenic |
| CTGCTTTGCATATATTATAT+CGG | 0.324889 | 4_4:+78888974 | None:intergenic |
| TACAATCGAAGGCCTGTTAC+AGG | 0.329460 | 4_4:+78886087 | None:intergenic |
| TGATGCAGTTCTTCAATTGC+TGG | 0.340098 | 4_4:+78886839 | None:intergenic |
| AGAAAGTTATTGAAAATATA+AGG | 0.345581 | 4_4:-78885431 | Msa0706000:exon |
| AGGAAAGAAAAGTAATTGTT+TGG | 0.366018 | 4_4:-78886058 | Msa0706000:CDS |
| GGGAGGATAGGTGCTGTAAA+TGG | 0.370254 | 4_4:+78886031 | None:intergenic |
| ATGGTCAATAGCAATCAATT+TGG | 0.371438 | 4_4:+78890632 | None:intergenic |
| TGCAAGAGGAAAGGTGGAAA+TGG | 0.378051 | 4_4:-78887712 | Msa0706000:CDS |
| TTGATAGATTTGGGAACATT+GGG | 0.386019 | 4_4:+78890567 | None:intergenic |
| CCTGGCTTGACTCAGAAATC+TGG | 0.389891 | 4_4:-78885742 | Msa0706000:CDS |
| CCACCAAGTAGAGATGTAAT+TGG | 0.395115 | 4_4:+78887613 | None:intergenic |
| GCCTGGTTACTGGGTTGTGT+CGG | 0.401562 | 4_4:-78885539 | Msa0706000:CDS |
| CCAGGAGAACCATCCCATTC+CGG | 0.402482 | 4_4:+78885760 | None:intergenic |
| CTCTGCGACTTCTTCCTATC+AGG | 0.407497 | 4_4:+78886755 | None:intergenic |
| GTAGGAATGAAGCCTGTAAC+AGG | 0.410479 | 4_4:-78886099 | Msa0706000:CDS |
| AGGGCCTCCTGTGCCTGCTC+AGG | 0.416486 | 4_4:-78885620 | Msa0706000:CDS |
| CCGGAATGGGATGGTTCTCC+TGG | 0.421354 | 4_4:-78885760 | Msa0706000:CDS |
| GGACAATGGACTAGGATTCC+TGG | 0.425003 | 4_4:-78888135 | Msa0706000:CDS |
| CCCATTCCGGCGCTCTCACA+CGG | 0.430776 | 4_4:+78885773 | None:intergenic |
| CGCTCTCACACGGGATGCAT+TGG | 0.434279 | 4_4:+78885783 | None:intergenic |
| AACCAGGAGGTGTCACTGTC+TGG | 0.436200 | 4_4:-78889734 | Msa0706000:CDS |
| ACAAGATTTGCCTGGTTACT+GGG | 0.437969 | 4_4:-78885548 | Msa0706000:CDS |
| GCAGGCACAGGAGGCCCTCC+AGG | 0.439934 | 4_4:+78885625 | None:intergenic |
| ATTGATAGATTTGGGAACAT+TGG | 0.442714 | 4_4:+78890566 | None:intergenic |
| GTATTTGGTGAGCTTGCCCT+TGG | 0.446594 | 4_4:-78886779 | Msa0706000:CDS |
| TCTTTACAGTTCAGTTTCAT+GGG | 0.453459 | 4_4:-78886725 | Msa0706000:CDS |
| GCAAGAGGAAAGGTGGAAAT+GGG | 0.457669 | 4_4:-78887711 | Msa0706000:CDS |
| AATGACATTGATATTACATC+AGG | 0.457909 | 4_4:+78887640 | None:intergenic |
| AGGGCAAGCTCACCAAATAC+AGG | 0.462328 | 4_4:+78886782 | None:intergenic |
| CTCTACTTGGTGGAATAAAT+GGG | 0.463188 | 4_4:-78887603 | Msa0706000:CDS |
| ATCATGGGATCCCGCTGCAC+TGG | 0.464186 | 4_4:-78889537 | Msa0706000:CDS |
| ACTGAAACGCAGAATTGAAA+TGG | 0.467660 | 4_4:+78889696 | None:intergenic |
| CTGGTTACTGGGTTGTGTCG+GGG | 0.469376 | 4_4:-78885537 | Msa0706000:CDS |
| TTCGGATCAAGTAGTTCAAC+GGG | 0.469930 | 4_4:-78885386 | Msa0706000:three_prime_UTR |
| CAGGTTGAGACAAAACAGTT+TGG | 0.471428 | 4_4:+78887659 | None:intergenic |
| AACAAGCTGTTCCTTCATCA+TGG | 0.471704 | 4_4:-78889553 | Msa0706000:CDS |
| AAGTACCTTGCCAGTGCAGC+GGG | 0.471772 | 4_4:+78889527 | None:intergenic |
| TTGACAAACCTAAACATCCT+TGG | 0.475178 | 4_4:-78890896 | Msa0706000:five_prime_UTR |
| CCCGTGTGAGAGCGCCGGAA+TGG | 0.475856 | 4_4:-78885774 | Msa0706000:CDS |
| TATGGAACCCATGCTGTAGT+TGG | 0.476255 | 4_4:-78889014 | Msa0706000:CDS |
| TTGTCATCGTAGGATTCAAC+AGG | 0.477803 | 4_4:+78885892 | None:intergenic |
| CCGTGTGAGAGCGCCGGAAT+GGG | 0.478499 | 4_4:-78885773 | Msa0706000:CDS |
| CCTGCAGTTGGAATGTCTTA+GGG | 0.480519 | 4_4:+78886007 | None:intergenic |
| CTGTCTGGTAAGATTCCAAC+AGG | 0.484770 | 4_4:-78889719 | Msa0706000:CDS |
| ATGGAACCCATGCTGTAGTT+GGG | 0.484856 | 4_4:-78889013 | Msa0706000:CDS |
| GATGTGTTTACATAGAGCTT+AGG | 0.487249 | 4_4:+78886701 | None:intergenic |
| GTTTCAGCTTCCAAGGCAAT+GGG | 0.490214 | 4_4:-78886807 | Msa0706000:CDS |
| AAATATTTACCTCTGTTTCA+CGG | 0.491033 | 4_4:+78888093 | None:intergenic |
| GAGTTCACATTTACGTCTGA+TGG | 0.491521 | 4_4:+78885658 | None:intergenic |
| CTCTTCATCCAGTAAAATCA+TGG | 0.493711 | 4_4:+78885456 | None:intergenic |
| AGTTTCAGCTTCCAAGGCAA+TGG | 0.494982 | 4_4:-78886808 | Msa0706000:CDS |
| AAAAGAATAATAAGAAGAAG+AGG | 0.497415 | 4_4:+78890858 | None:intergenic |
| AGAATGAAGATGAATATCTT+CGG | 0.498634 | 4_4:-78885404 | Msa0706000:three_prime_UTR |
| CCCGACACAACCCAGTAACC+AGG | 0.503851 | 4_4:+78885538 | None:intergenic |
| GATGACAACGCTGTTGTGAC+TGG | 0.505109 | 4_4:-78885877 | Msa0706000:CDS |
| AATACAGGGGCCCATTGCCT+TGG | 0.505547 | 4_4:+78886797 | None:intergenic |
| AGAACGTAAATATTATGAAA+AGG | 0.509241 | 4_4:-78885950 | Msa0706000:CDS |
| GGCCTTCGATTGTATTTGGA+AGG | 0.513342 | 4_4:-78886078 | Msa0706000:CDS |
| TGGTTACTGGGTTGTGTCGG+GGG | 0.513759 | 4_4:-78885536 | Msa0706000:CDS |
| ACGTCTGATGGCTGTGGTGG+CGG | 0.513901 | 4_4:+78885670 | None:intergenic |
| GATTAGTCTCGTCCTGCAGT+TGG | 0.514559 | 4_4:+78885995 | None:intergenic |
| TACCAGACAGTGACACCTCC+TGG | 0.517330 | 4_4:+78889732 | None:intergenic |
| ATGTCTTAGGGAGGGAGGAT+AGG | 0.518519 | 4_4:+78886019 | None:intergenic |
| GGTGCCTGAGCAGGCACAGG+AGG | 0.519880 | 4_4:+78885616 | None:intergenic |
| ATAATATTTACGTTCTGAAG+AGG | 0.520688 | 4_4:+78885957 | None:intergenic |
| TGTAGTTGGGGTGAAAATAG+GGG | 0.521680 | 4_4:-78889000 | Msa0706000:CDS |
| TTCCTTCCAAATACAATCGA+AGG | 0.523301 | 4_4:+78886076 | None:intergenic |
| TTTATGAGGGACAATGGACT+AGG | 0.526501 | 4_4:-78888143 | Msa0706000:CDS |
| GACTGGTGCTCACTTTGAAG+TGG | 0.527063 | 4_4:-78885860 | Msa0706000:CDS |
| ATACCAATTACATCTCTACT+TGG | 0.528757 | 4_4:-78887616 | Msa0706000:CDS |
| CCAGATTTCTGAGTCAAGCC+AGG | 0.528793 | 4_4:+78885742 | None:intergenic |
| CCCTAAGACATTCCAACTGC+AGG | 0.531837 | 4_4:-78886007 | Msa0706000:CDS |
| AGAAGTTTAGGTGCCTGAGC+AGG | 0.531964 | 4_4:+78885607 | None:intergenic |
| CCAATTACATCTCTACTTGG+TGG | 0.533413 | 4_4:-78887613 | Msa0706000:CDS |
| TTTATGTGCAAGAGGAAAGG+TGG | 0.534940 | 4_4:-78887718 | Msa0706000:CDS |
| GGAAGAGAAGAAAGCGTCCA+AGG | 0.536507 | 4_4:+78890879 | None:intergenic |
| TTAGGTGCCTGAGCAGGCAC+AGG | 0.536783 | 4_4:+78885613 | None:intergenic |
| ACCAAGAGTCTTGCTTTCGA+TGG | 0.538520 | 4_4:-78889641 | Msa0706000:CDS |
| AGAGGACCACAAGATTTGCC+TGG | 0.539438 | 4_4:-78885556 | Msa0706000:CDS |
| TGCTATGTTGTAGAGTGTAA+TGG | 0.539930 | 4_4:+78889613 | None:intergenic |
| GATGTCAGAGCAGTTCAACC+AGG | 0.542518 | 4_4:-78889750 | Msa0706000:CDS |
| AGCTTGCCCTTGGTCCTGAT+AGG | 0.545252 | 4_4:-78886769 | Msa0706000:CDS |
| ATTTACCTCTGTTTCACGGT+AGG | 0.545369 | 4_4:+78888097 | None:intergenic |
| CTTGGTGGAATAAATGGGAG+TGG | 0.546225 | 4_4:-78887598 | Msa0706000:CDS |
| AGGATTGAGCTTGAATGTCC+AGG | 0.547656 | 4_4:+78888117 | None:intergenic |
| GGATTTAATCACATCTTCAA+CGG | 0.552918 | 4_4:+78890713 | None:intergenic |
| GAAGATGTGATTAAATCCGT+TGG | 0.554663 | 4_4:-78890708 | Msa0706000:CDS |
| TTTCACCCCAACTACAGCAT+GGG | 0.554948 | 4_4:+78889007 | None:intergenic |
| GGGAGAAACTGGTCTGAAGA+AGG | 0.557980 | 4_4:-78885839 | Msa0706000:CDS |
| AACTCTGCTTTATACCCTGG+AGG | 0.559576 | 4_4:-78885640 | Msa0706000:CDS |
| GTGAGAGCGCCGGAATGGGA+TGG | 0.561426 | 4_4:-78885769 | Msa0706000:CDS |
| GCAGAATTGAAATGGCCTGT+TGG | 0.563332 | 4_4:+78889704 | None:intergenic |
| TGCATCCCGTGTGAGAGCGC+CGG | 0.564781 | 4_4:-78885779 | Msa0706000:CDS |
| GGGATCCCGCTGCACTGGCA+AGG | 0.568140 | 4_4:-78889532 | Msa0706000:intron |
| GCCATCGAAAGCAAGACTCT+TGG | 0.568546 | 4_4:+78889640 | None:intergenic |
| CCCCAGTTTATGAGGGACAA+TGG | 0.569449 | 4_4:-78888149 | Msa0706000:intron |
| ACAAGCTGTTCCTTCATCAT+GGG | 0.571304 | 4_4:-78889552 | Msa0706000:CDS |
| AACTTCTTGTAGGTCGATGT+AGG | 0.574111 | 4_4:-78886117 | Msa0706000:intron |
| GCAGCGGGATCCCATGATGA+AGG | 0.574310 | 4_4:+78889542 | None:intergenic |
| CTTCGGATCAAGTAGTTCAA+CGG | 0.578561 | 4_4:-78885387 | Msa0706000:three_prime_UTR |
| TATGAGAGAAGCTCTTCCAC+TGG | 0.578760 | 4_4:+78885926 | None:intergenic |
| GTGAACTCTGCTTTATACCC+TGG | 0.583406 | 4_4:-78885643 | Msa0706000:CDS |
| ATCAACTAAATAAGAAGTGG+TGG | 0.583426 | 4_4:+78890797 | None:intergenic |
| CAGTTTGGCACCACTCATTG+TGG | 0.583966 | 4_4:+78887674 | None:intergenic |
| GGCAAGGCTTTATGTCGAGA+AGG | 0.584563 | 4_4:-78885515 | Msa0706000:CDS |
| TTCATCAACTAAATAAGAAG+TGG | 0.585093 | 4_4:+78890794 | None:intergenic |
| GAGCTTCTCTCATATTTGCA+CGG | 0.587829 | 4_4:-78885917 | Msa0706000:CDS |
| AAGTTTATGTGCAAGAGGAA+AGG | 0.589600 | 4_4:-78887721 | Msa0706000:CDS |
| TGATCAATCATGATTCCCCT+TGG | 0.589687 | 4_4:-78885205 | Msa0706000:three_prime_UTR |
| ACATTTACGTCTGATGGCTG+TGG | 0.591624 | 4_4:+78885664 | None:intergenic |
| GGGCAAGCTCACCAAATACA+GGG | 0.595006 | 4_4:+78886783 | None:intergenic |
| ATATAAAGTTTATGTGCAAG+AGG | 0.596880 | 4_4:-78887726 | Msa0706000:CDS |
| AAAATCTCAGCCACAATGAG+TGG | 0.599869 | 4_4:-78887684 | Msa0706000:CDS |
| CAGGCACAGGAGGCCCTCCA+GGG | 0.600964 | 4_4:+78885626 | None:intergenic |
| CATACAGACACAAAGACCAA+GGG | 0.605511 | 4_4:+78885189 | None:intergenic |
| CATCAGAACACAATCTCATA+CGG | 0.614635 | 4_4:+78890529 | None:intergenic |
| AAAGTACCTTGCCAGTGCAG+CGG | 0.617410 | 4_4:+78889526 | None:intergenic |
| TTGGGAATTGAAACACGACC+AGG | 0.619304 | 4_4:+78890585 | None:intergenic |
| AAGTTATTGAAAATATAAGG+TGG | 0.622518 | 4_4:-78885428 | Msa0706000:exon |
| ACTGGTGCTCACTTTGAAGT+GGG | 0.625192 | 4_4:-78885859 | Msa0706000:CDS |
| CCATTCCGGCGCTCTCACAC+GGG | 0.626310 | 4_4:+78885774 | None:intergenic |
| ACTCTGCTTTATACCCTGGA+GGG | 0.628094 | 4_4:-78885639 | Msa0706000:CDS |
| CAGTTGGAATGTCTTAGGGA+GGG | 0.629873 | 4_4:+78886011 | None:intergenic |
| GCTCTATGTAAACACATCAC+CGG | 0.630530 | 4_4:-78886696 | Msa0706000:intron |
| GCAGTTGGAATGTCTTAGGG+AGG | 0.632346 | 4_4:+78886010 | None:intergenic |
| GTAGTTGGGGTGAAAATAGG+GGG | 0.632775 | 4_4:-78888999 | Msa0706000:CDS |
| ACATACAGACACAAAGACCA+AGG | 0.633038 | 4_4:+78885188 | None:intergenic |
| GAATTTGAGTCTGAGATCGT+TGG | 0.633313 | 4_4:+78890668 | None:intergenic |
| ACTTCTTCCTATCAGGACCA+AGG | 0.634932 | 4_4:+78886762 | None:intergenic |
| AATATTATGAAAAGGTCCAG+TGG | 0.637646 | 4_4:-78885942 | Msa0706000:CDS |
| CAGTAACCAGGCAAATCTTG+TGG | 0.638344 | 4_4:+78885550 | None:intergenic |
| TTGGAATGTCTTAGGGAGGG+AGG | 0.641738 | 4_4:+78886014 | None:intergenic |
| TGTACATCAGAAGGTTGGAG+AGG | 0.642552 | 4_4:+78888939 | None:intergenic |
| CACAACAGCGTTGTCATCGT+AGG | 0.646159 | 4_4:+78885882 | None:intergenic |
| CTTCTTCCTATCAGGACCAA+GGG | 0.648164 | 4_4:+78886763 | None:intergenic |
| TCCCAAAAGATATGTTGTGT+AGG | 0.654087 | 4_4:+78885261 | None:intergenic |
| GCAAGGCTTTATGTCGAGAA+GGG | 0.657734 | 4_4:-78885514 | Msa0706000:CDS |
| TGGAACCCATGCTGTAGTTG+GGG | 0.658404 | 4_4:-78889012 | Msa0706000:CDS |
| TTTACGTCTGATGGCTGTGG+TGG | 0.665055 | 4_4:+78885667 | None:intergenic |
| CAACAGTACGAAGATTGTCA+TGG | 0.665393 | 4_4:+78890613 | None:intergenic |
| TCAATCCTACCGTGAAACAG+AGG | 0.667846 | 4_4:-78888102 | Msa0706000:intron |
| GTCAGAGCAGTTCAACCAGG+AGG | 0.677917 | 4_4:-78889747 | Msa0706000:CDS |
| GAGATCGTAACCTAATCCAA+CGG | 0.688460 | 4_4:+78890692 | None:intergenic |
| ATACAGACACAAAGACCAAG+GGG | 0.690585 | 4_4:+78885190 | None:intergenic |
| GACACAACAGAAATGACTAG+AGG | 0.699740 | 4_4:-78885574 | Msa0706000:CDS |
| GGCAAGCTCACCAAATACAG+GGG | 0.700077 | 4_4:+78886784 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTAACTATATTCTTTTTT+TGG | - | chr4_4:78885577-78885596 | Msa0706000:CDS | 15.0% |
| !!! | ATATAAGATTTTTAATTGCA+TGG | - | chr4_4:78886067-78886086 | Msa0706000:CDS | 15.0% |
| !! | TTTCTTTCAAAAGAATATTT+AGG | - | chr4_4:78886690-78886709 | Msa0706000:intron | 15.0% |
| !!! | TTTTATAATTTATATTGCTG+TGG | - | chr4_4:78888087-78888106 | Msa0706000:intron | 15.0% |
| !!! | TAAAATTATTTTCCTTACTA+GGG | - | chr4_4:78888243-78888262 | Msa0706000:intron | 15.0% |
| !! | TTAAATAAGTAAATGACTAA+AGG | + | chr4_4:78888534-78888553 | None:intergenic | 15.0% |
| !! | CTTAAAAATTATAGAATAAC+AGG | + | chr4_4:78888836-78888855 | None:intergenic | 15.0% |
| !!! | AAAAATTTAACTTGAGATTT+TGG | + | chr4_4:78889724-78889743 | None:intergenic | 15.0% |
| !! | AGAAAGTTATTGAAAATATA+AGG | - | chr4_4:78890620-78890639 | Msa0706000:CDS | 15.0% |
| !! | AAAAGAATAATAAGAAGAAG+AGG | + | chr4_4:78885196-78885215 | None:intergenic | 20.0% |
| !! | TTATCACAATTGATAGATTT+GGG | + | chr4_4:78885496-78885515 | None:intergenic | 20.0% |
| !! | TTTATCACAATTGATAGATT+TGG | + | chr4_4:78885497-78885516 | None:intergenic | 20.0% |
| !! | AAATCTATCAATTGTGATAA+AGG | - | chr4_4:78885496-78885515 | Msa0706000:CDS | 20.0% |
| !!! | TTTAGTTCAAGTTTATTATG+TGG | - | chr4_4:78885601-78885620 | Msa0706000:CDS | 20.0% |
| !!! | TTAGTTCAAGTTTATTATGT+GGG | - | chr4_4:78885602-78885621 | Msa0706000:CDS | 20.0% |
| !!! | TCTTATTTTGGAAACTAAAT+TGG | + | chr4_4:78885710-78885729 | None:intergenic | 20.0% |
| !!! | AATTTAGTTTCCAAAATAAG+AGG | - | chr4_4:78885709-78885728 | Msa0706000:CDS | 20.0% |
| !!! | ATCTTTTTAAATTCCAGAAT+TGG | + | chr4_4:78885740-78885759 | None:intergenic | 20.0% |
| !! | TTAGATTATTTAGACCATTT+GGG | + | chr4_4:78885818-78885837 | None:intergenic | 20.0% |
| !! | ATTAGATTATTTAGACCATT+TGG | + | chr4_4:78885819-78885838 | None:intergenic | 20.0% |
| !!! | TTTAATTGCATGGTTATTTT+AGG | - | chr4_4:78886077-78886096 | Msa0706000:CDS | 20.0% |
| !!! | ATTTTAGTTCCTTAAAATGT+GGG | + | chr4_4:78886140-78886159 | None:intergenic | 20.0% |
| !!! | TATTTTAGTTCCTTAAAATG+TGG | + | chr4_4:78886141-78886160 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTGTTCTTATTC+CGG | - | chr4_4:78886164-78886183 | Msa0706000:intron | 20.0% |
| !! | AGAATAAAAGAAAAAAGAAC+CGG | + | chr4_4:78887242-78887261 | None:intergenic | 20.0% |
| !!! | CTTTTATTCTCTTTGATTTA+AGG | - | chr4_4:78887252-78887271 | Msa0706000:intron | 20.0% |
| !!! | AGTTTGTATTTGTTGATTTT+AGG | - | chr4_4:78887448-78887467 | Msa0706000:intron | 20.0% |
| !!! | GTTTGTATTTGTTGATTTTA+GGG | - | chr4_4:78887449-78887468 | Msa0706000:intron | 20.0% |
| !! | TGTAGATATCAAGATTTATT+TGG | - | chr4_4:78887530-78887549 | Msa0706000:intron | 20.0% |
| !! | GTAGATATCAAGATTTATTT+GGG | - | chr4_4:78887531-78887550 | Msa0706000:intron | 20.0% |
| !! | TAGATATCAAGATTTATTTG+GGG | - | chr4_4:78887532-78887551 | Msa0706000:intron | 20.0% |
| !! | TATATCATGTTATATGTTAG+AGG | - | chr4_4:78887576-78887595 | Msa0706000:CDS | 20.0% |
| !! | AAATAATATATCTCCCATTA+AGG | + | chr4_4:78887776-78887795 | None:intergenic | 20.0% |
| !!! | GGTAATGTAATTTTTTGTTT+AGG | + | chr4_4:78887839-78887858 | None:intergenic | 20.0% |
| !! | AAACCTGATAAAAAGAAAAT+AGG | + | chr4_4:78888050-78888069 | None:intergenic | 20.0% |
| !!! | CTAAAATTATTTTCCTTACT+AGG | - | chr4_4:78888242-78888261 | Msa0706000:intron | 20.0% |
| !! | TCAAAAAATTTATACATCTG+CGG | + | chr4_4:78888590-78888609 | None:intergenic | 20.0% |
| !! | AATCTTCCATAAAAGAATAA+TGG | + | chr4_4:78888975-78888994 | None:intergenic | 20.0% |
| !! | AACTAATTCAAAAGCTTAAA+CGG | - | chr4_4:78889451-78889470 | Msa0706000:intron | 20.0% |
| !!! | ATTTTTCCAATAAAATTGTC+AGG | - | chr4_4:78889738-78889757 | Msa0706000:CDS | 20.0% |
| !! | AGAACGTAAATATTATGAAA+AGG | - | chr4_4:78890101-78890120 | Msa0706000:intron | 20.0% |
| !! | AAGTTATTGAAAATATAAGG+TGG | - | chr4_4:78890623-78890642 | Msa0706000:CDS | 20.0% |
| !!! | TGCATTTTTTTTTATGTTAG+TGG | - | chr4_4:78890893-78890912 | Msa0706000:five_prime_UTR | 20.0% |
| ! | TAATGAAAGCAAAAACCAAA+GGG | + | chr4_4:78885225-78885244 | None:intergenic | 25.0% |
| ! | TTAATGAAAGCAAAAACCAA+AGG | + | chr4_4:78885226-78885245 | None:intergenic | 25.0% |
| ! | TTCATCAACTAAATAAGAAG+TGG | + | chr4_4:78885260-78885279 | None:intergenic | 25.0% |
| ! | ATAGTTAAGAAAGAAAAGCA+AGG | + | chr4_4:78885567-78885586 | None:intergenic | 25.0% |
| !! | TATAAGATTTTTAAACCCCT+AGG | - | chr4_4:78885840-78885859 | Msa0706000:CDS | 25.0% |
| !! | ATAAGATTTTTAAACCCCTA+GGG | - | chr4_4:78885841-78885860 | Msa0706000:CDS | 25.0% |
| !! | ATCTTATATAAACCCTTTTC+TGG | + | chr4_4:78886056-78886075 | None:intergenic | 25.0% |
| !! | TTAAAATGTGGGAGTATATA+GGG | + | chr4_4:78886129-78886148 | None:intergenic | 25.0% |
| ! | ACATAAGTTCATAACACATA+AGG | + | chr4_4:78886652-78886671 | None:intergenic | 25.0% |
| ! | CTTATGTGATTAATAAGAGA+TGG | - | chr4_4:78886665-78886684 | Msa0706000:intron | 25.0% |
| !! | TTTAGGACATGCAAAAATAA+AGG | - | chr4_4:78886707-78886726 | Msa0706000:CDS | 25.0% |
| !! | TCTTTTCATTGTATCATTTC+AGG | - | chr4_4:78887002-78887021 | Msa0706000:intron | 25.0% |
| ! | CTGCTTTGCATATATTATAT+CGG | + | chr4_4:78887080-78887099 | None:intergenic | 25.0% |
| !!! | AATTTTTTCTGTACATCAGA+AGG | + | chr4_4:78887124-78887143 | None:intergenic | 25.0% |
| ! | TGATGTACAGAAAAAATTGA+AGG | - | chr4_4:78887126-78887145 | Msa0706000:intron | 25.0% |
| ! | GGCATTTAATTCAAAAGAAA+AGG | - | chr4_4:78887204-78887223 | Msa0706000:intron | 25.0% |
| ! | GAATAAAAGAAAAAAGAACC+GGG | + | chr4_4:78887241-78887260 | None:intergenic | 25.0% |
| ! | ACATGATATAGAATGCTAAA+GGG | + | chr4_4:78887566-78887585 | None:intergenic | 25.0% |
| ! | AACATGATATAGAATGCTAA+AGG | + | chr4_4:78887567-78887586 | None:intergenic | 25.0% |
| ! | AAATGTTAGAATGAATCCAA+AGG | - | chr4_4:78887749-78887768 | Msa0706000:intron | 25.0% |
| ! | AATGGGAGATATATTATTTC+TGG | - | chr4_4:78887777-78887796 | Msa0706000:intron | 25.0% |
| ! | AAATATTTACCTCTGTTTCA+CGG | + | chr4_4:78887961-78887980 | None:intergenic | 25.0% |
| !! | TTGCCTATTTTCTTTTTATC+AGG | - | chr4_4:78888044-78888063 | Msa0706000:intron | 25.0% |
| ! | TTTGTATTTGAAAAGTTCCT+GGG | - | chr4_4:78888161-78888180 | Msa0706000:intron | 25.0% |
| ! | ATATAAAGTTTATGTGCAAG+AGG | - | chr4_4:78888325-78888344 | Msa0706000:intron | 25.0% |
| ! | AATGACATTGATATTACATC+AGG | + | chr4_4:78888414-78888433 | None:intergenic | 25.0% |
| ! | ACATCGTAAATAGAGATTTA+TGG | + | chr4_4:78888493-78888512 | None:intergenic | 25.0% |
| !!! | ATAATTTTTCAGTGGAATGT+TGG | + | chr4_4:78888738-78888757 | None:intergenic | 25.0% |
| ! | ATTCCACTGAAAAATTATGT+CGG | - | chr4_4:78888740-78888759 | Msa0706000:intron | 25.0% |
| ! | ATTAGTAGTAGTAATTGTGT+GGG | + | chr4_4:78888780-78888799 | None:intergenic | 25.0% |
| ! | TATTAGTAGTAGTAATTGTG+TGG | + | chr4_4:78888781-78888800 | None:intergenic | 25.0% |
| ! | CAAAGATAAAAACAAGCAAT+TGG | + | chr4_4:78889416-78889435 | None:intergenic | 25.0% |
| !!! | CAATTGCTTGTTTTTATCTT+TGG | - | chr4_4:78889414-78889433 | Msa0706000:intron | 25.0% |
| !! | GTTTAAGCTTTTGAATTAGT+TGG | + | chr4_4:78889452-78889471 | None:intergenic | 25.0% |
| ! | TGATTAATGAGAAAATCACA+GGG | + | chr4_4:78889540-78889559 | None:intergenic | 25.0% |
| ! | ATGATTAATGAGAAAATCAC+AGG | + | chr4_4:78889541-78889560 | None:intergenic | 25.0% |
| ! | TACAAATGTGGAGAATTATA+TGG | - | chr4_4:78889901-78889920 | Msa0706000:intron | 25.0% |
| ! | AGGAAAGAAAAGTAATTGTT+TGG | - | chr4_4:78889993-78890012 | Msa0706000:intron | 25.0% |
| !!! | ATAATATTTACGTTCTGAAG+AGG | + | chr4_4:78890097-78890116 | None:intergenic | 25.0% |
| !! | TCTTTTAACCATGATTTTAC+TGG | - | chr4_4:78890587-78890606 | Msa0706000:CDS | 25.0% |
| ! | AGAATGAAGATGAATATCTT+CGG | - | chr4_4:78890647-78890666 | Msa0706000:CDS | 25.0% |
| ! | ACATTTGCTCTATTCATTAT+AGG | - | chr4_4:78890732-78890751 | Msa0706000:CDS | 25.0% |
| ! | TTTCATGCAAACAATGAAAA+AGG | - | chr4_4:78890920-78890939 | Msa0706000:five_prime_UTR | 25.0% |
| !! | TATTCTTTTGCTTTTCCCTT+TGG | - | chr4_4:78885207-78885226 | Msa0706000:three_prime_UTR | 30.0% |
| ATCAACTAAATAAGAAGTGG+TGG | + | chr4_4:78885257-78885276 | None:intergenic | 30.0% | |
| GGATTTAATCACATCTTCAA+CGG | + | chr4_4:78885341-78885360 | None:intergenic | 30.0% | |
| ATGGTCAATAGCAATCAATT+TGG | + | chr4_4:78885422-78885441 | None:intergenic | 30.0% | |
| TTGATAGATTTGGGAACATT+GGG | + | chr4_4:78885487-78885506 | None:intergenic | 30.0% | |
| ATTGATAGATTTGGGAACAT+TGG | + | chr4_4:78885488-78885507 | None:intergenic | 30.0% | |
| !!! | TGTTGTGTTTTTTTCTGTGT+TGG | - | chr4_4:78885640-78885659 | Msa0706000:CDS | 30.0% |
| !! | ATTGGTTGAACCTCTTATTT+TGG | + | chr4_4:78885722-78885741 | None:intergenic | 30.0% |
| ATTATTTAGACCATTTGGGT+TGG | + | chr4_4:78885814-78885833 | None:intergenic | 30.0% | |
| !! | TTTTCTGGAAACTTGATATC+CGG | + | chr4_4:78886041-78886060 | None:intergenic | 30.0% |
| GATATCAAGTTTCCAGAAAA+GGG | - | chr4_4:78886041-78886060 | Msa0706000:CDS | 30.0% | |
| ! | CTTAAAATGTGGGAGTATAT+AGG | + | chr4_4:78886130-78886149 | None:intergenic | 30.0% |
| ! | CTATATACTCCCACATTTTA+AGG | - | chr4_4:78886128-78886147 | Msa0706000:intron | 30.0% |
| TCCGGTGAAATTAAATTCTT+TGG | - | chr4_4:78886182-78886201 | Msa0706000:intron | 30.0% | |
| ! | GCCAAAGAATTTAATTTCAC+CGG | + | chr4_4:78886186-78886205 | None:intergenic | 30.0% |
| CTAAAGGATAAAGCAAAACA+AGG | + | chr4_4:78886282-78886301 | None:intergenic | 30.0% | |
| TAGCTAAACATAAAGCAAGA+GGG | + | chr4_4:78886582-78886601 | None:intergenic | 30.0% | |
| ATAGCTAAACATAAAGCAAG+AGG | + | chr4_4:78886583-78886602 | None:intergenic | 30.0% | |
| GCAAACAACGAAAAAATTCA+AGG | + | chr4_4:78886911-78886930 | None:intergenic | 30.0% | |
| CATTTACATGAGAAATGTTG+TGG | + | chr4_4:78886947-78886966 | None:intergenic | 30.0% | |
| ! | TTCAGGTTCATTGAGAAATA+TGG | - | chr4_4:78887019-78887038 | Msa0706000:intron | 30.0% |
| ACAGAAAAAATTGAAGGACA+TGG | - | chr4_4:78887132-78887151 | Msa0706000:intron | 30.0% | |
| GACAAAATAACGCTAATGAT+GGG | - | chr4_4:78887182-78887201 | Msa0706000:intron | 30.0% | |
| ACAAAATAACGCTAATGATG+GGG | - | chr4_4:78887183-78887202 | Msa0706000:intron | 30.0% | |
| !!! | GTTGTTACTTTTCTGAATAC+TGG | - | chr4_4:78887397-78887416 | Msa0706000:intron | 30.0% |
| TAAGATAACAAGATAATCCC+TGG | - | chr4_4:78887483-78887502 | Msa0706000:intron | 30.0% | |
| ! | GATCTTTTTATTGAAGACCA+GGG | + | chr4_4:78887503-78887522 | None:intergenic | 30.0% |
| ! | AGATCTTTTTATTGAAGACC+AGG | + | chr4_4:78887504-78887523 | None:intergenic | 30.0% |
| AATTTATATTGCTGTGGAAC+TGG | - | chr4_4:78888093-78888112 | Msa0706000:intron | 30.0% | |
| CTTTGTATTTGAAAAGTTCC+TGG | - | chr4_4:78888160-78888179 | Msa0706000:intron | 30.0% | |
| !! | ATTAAGCAGAAGAGTGTTTA+TGG | + | chr4_4:78888197-78888216 | None:intergenic | 30.0% |
| TAAAATGTTTAACGAGAAGG+GGG | + | chr4_4:78888297-78888316 | None:intergenic | 30.0% | |
| CTAAAATGTTTAACGAGAAG+GGG | + | chr4_4:78888298-78888317 | None:intergenic | 30.0% | |
| CCTAAAATGTTTAACGAGAA+GGG | + | chr4_4:78888299-78888318 | None:intergenic | 30.0% | |
| ACCTAAAATGTTTAACGAGA+AGG | + | chr4_4:78888300-78888319 | None:intergenic | 30.0% | |
| ATACCAATTACATCTCTACT+TGG | - | chr4_4:78888435-78888454 | Msa0706000:intron | 30.0% | |
| ! | TGTTCGCCATTATTCTTTTA+TGG | - | chr4_4:78888966-78888985 | Msa0706000:CDS | 30.0% |
| ATGAGAAACAAATACTGTTG+TGG | - | chr4_4:78889041-78889060 | Msa0706000:intron | 30.0% | |
| ! | TCTTTTTAAACTCTTGTGCA+AGG | + | chr4_4:78889139-78889158 | None:intergenic | 30.0% |
| ! | TGAAGAACTGCATCAATTTT+TGG | - | chr4_4:78889220-78889239 | Msa0706000:intron | 30.0% |
| ATCTTTACAGTTCAGTTTCA+TGG | - | chr4_4:78889325-78889344 | Msa0706000:intron | 30.0% | |
| TCTTTACAGTTCAGTTTCAT+GGG | - | chr4_4:78889326-78889345 | Msa0706000:intron | 30.0% | |
| ! | ACTGTATTTTATGTTTCCGA+GGG | - | chr4_4:78889639-78889658 | Msa0706000:CDS | 30.0% |
| AAGATGTATATGTGATGCAA+GGG | + | chr4_4:78889675-78889694 | None:intergenic | 30.0% | |
| AAAGATGTATATGTGATGCA+AGG | + | chr4_4:78889676-78889695 | None:intergenic | 30.0% | |
| ! | ACAACTCCTGACAATTTTAT+TGG | + | chr4_4:78889747-78889766 | None:intergenic | 30.0% |
| ! | TTGTATTGATGAAGACACTT+GGG | - | chr4_4:78889812-78889831 | Msa0706000:intron | 30.0% |
| ACGTTGCAAAATTACAAATG+TGG | - | chr4_4:78889889-78889908 | Msa0706000:intron | 30.0% | |
| TCAACAAACTTCAGAAGTTT+AGG | + | chr4_4:78890459-78890478 | None:intergenic | 30.0% | |
| ! | TACCTACACAACATATCTTT+TGG | - | chr4_4:78890788-78890807 | Msa0706000:five_prime_UTR | 30.0% |
| ! | ACCTACACAACATATCTTTT+GGG | - | chr4_4:78890789-78890808 | Msa0706000:five_prime_UTR | 30.0% |
| !! | ATATCTTTTGGGAGAATCAT+TGG | - | chr4_4:78890800-78890819 | Msa0706000:five_prime_UTR | 30.0% |
| TTGACAAACCTAAACATCCT+TGG | - | chr4_4:78885155-78885174 | Msa0706000:three_prime_UTR | 35.0% | |
| GAAGATGTGATTAAATCCGT+TGG | - | chr4_4:78885343-78885362 | Msa0706000:three_prime_UTR | 35.0% | |
| GTGATTAAATCCGTTGGATT+AGG | - | chr4_4:78885349-78885368 | Msa0706000:three_prime_UTR | 35.0% | |
| CATCAGAACACAATCTCATA+CGG | + | chr4_4:78885525-78885544 | None:intergenic | 35.0% | |
| ! | TGATGTTCTTTCTTTTCAGC+AGG | - | chr4_4:78885540-78885559 | Msa0706000:CDS | 35.0% |
| CAAGTTTATTATGTGGGTCT+AGG | - | chr4_4:78885608-78885627 | Msa0706000:CDS | 35.0% | |
| ATAAGAGGTTCAACCAATTC+TGG | - | chr4_4:78885724-78885743 | Msa0706000:CDS | 35.0% | |
| ACTAAATTGACCAACCCAAA+TGG | - | chr4_4:78885801-78885820 | Msa0706000:CDS | 35.0% | |
| TCCTTAGATTTGTCGTTACT+TGG | - | chr4_4:78886014-78886033 | Msa0706000:CDS | 35.0% | |
| TCCAAGTAACGACAAATCTA+AGG | + | chr4_4:78886018-78886037 | None:intergenic | 35.0% | |
| GGATATCAAGTTTCCAGAAA+AGG | - | chr4_4:78886040-78886059 | Msa0706000:CDS | 35.0% | |
| TCATTGTTTGTGTGACTGAA+TGG | - | chr4_4:78886247-78886266 | Msa0706000:intron | 35.0% | |
| CATTGTTTGTGTGACTGAAT+GGG | - | chr4_4:78886248-78886267 | Msa0706000:intron | 35.0% | |
| ACTGAAACGCAGAATTGAAA+TGG | + | chr4_4:78886358-78886377 | None:intergenic | 35.0% | |
| ! | AATTCTGCGTTTCAGTTTTC+AGG | - | chr4_4:78886362-78886381 | Msa0706000:intron | 35.0% |
| TGCTATGTTGTAGAGTGTAA+TGG | + | chr4_4:78886441-78886460 | None:intergenic | 35.0% | |
| AGCTAAACATAAAGCAAGAG+GGG | + | chr4_4:78886581-78886600 | None:intergenic | 35.0% | |
| ! | ATTTTTAATCGCTGCTCACT+AGG | - | chr4_4:78886601-78886620 | Msa0706000:intron | 35.0% |
| ! | TTTTTAATCGCTGCTCACTA+GGG | - | chr4_4:78886602-78886621 | Msa0706000:intron | 35.0% |
| AAAAAATTCAAGGCTCTTCC+TGG | + | chr4_4:78886901-78886920 | None:intergenic | 35.0% | |
| ! | TTTTCTGTACATCAGAAGGT+TGG | + | chr4_4:78887120-78887139 | None:intergenic | 35.0% |
| GGACAAAATAACGCTAATGA+TGG | - | chr4_4:78887181-78887200 | Msa0706000:intron | 35.0% | |
| ! | GAAAAGGTTTAAAGCTTTCC+CGG | - | chr4_4:78887220-78887239 | Msa0706000:intron | 35.0% |
| !! | TCACGAAGTATTGTTGACTA+AGG | + | chr4_4:78887364-78887383 | None:intergenic | 35.0% |
| !! | TTACTTTTCTGAATACTGGC+AGG | - | chr4_4:78887401-78887420 | Msa0706000:intron | 35.0% |
| TTGATCCCTTACATTGTAGA+TGG | - | chr4_4:78887610-78887629 | Msa0706000:CDS | 35.0% | |
| TCCTACCATCTACAATGTAA+GGG | + | chr4_4:78887618-78887637 | None:intergenic | 35.0% | |
| GTAGGACAGAAAGGAATTTA+TGG | - | chr4_4:78887632-78887651 | Msa0706000:CDS | 35.0% | |
| ATGAATCCAAAGGACCTTAA+TGG | - | chr4_4:78887759-78887778 | Msa0706000:intron | 35.0% | |
| TGAATCCAAAGGACCTTAAT+GGG | - | chr4_4:78887760-78887779 | Msa0706000:intron | 35.0% | |
| ! | GAGGAAAGTATAAGTTATGC+TGG | + | chr4_4:78887874-78887893 | None:intergenic | 35.0% |
| GACAATAAGGATCATGTAGT+TGG | + | chr4_4:78888005-78888024 | None:intergenic | 35.0% | |
| AACAAGCATAGGTGACAATA+AGG | + | chr4_4:78888018-78888037 | None:intergenic | 35.0% | |
| TTTATGGTAACAGAAAACCC+AGG | + | chr4_4:78888181-78888200 | None:intergenic | 35.0% | |
| ! | CCCTTCTCGTTAAACATTTT+AGG | - | chr4_4:78888296-78888315 | Msa0706000:intron | 35.0% |
| !! | TCGTTAAACATTTTAGGTGC+AGG | - | chr4_4:78888302-78888321 | Msa0706000:intron | 35.0% |
| AAGTTTATGTGCAAGAGGAA+AGG | - | chr4_4:78888330-78888349 | Msa0706000:intron | 35.0% | |
| ! | TCTCTACTTGGTGGAATAAA+TGG | - | chr4_4:78888447-78888466 | Msa0706000:intron | 35.0% |
| ! | CTCTACTTGGTGGAATAAAT+GGG | - | chr4_4:78888448-78888467 | Msa0706000:intron | 35.0% |
| ACATTTCGTTTCAAAGCCTA+TGG | - | chr4_4:78888553-78888572 | Msa0706000:intron | 35.0% | |
| ! | TAGAGAAACTCGTGTTTTCT+TGG | - | chr4_4:78888645-78888664 | Msa0706000:intron | 35.0% |
| CATAACAGTGGAATTGATGT+CGG | + | chr4_4:78888696-78888715 | None:intergenic | 35.0% | |
| TCAATTCCACTGTTATGCTA+TGG | - | chr4_4:78888699-78888718 | Msa0706000:intron | 35.0% | |
| !! | ACACCGACATAATTTTTCAG+TGG | + | chr4_4:78888746-78888765 | None:intergenic | 35.0% |
| GATGTGTTTACATAGAGCTT+AGG | + | chr4_4:78889353-78889372 | None:intergenic | 35.0% | |
| GCATCTTTCTGTACTAAGAT+AGG | - | chr4_4:78889565-78889584 | Msa0706000:CDS | 35.0% | |
| ! | GACTGTATTTTATGTTTCCG+AGG | - | chr4_4:78889638-78889657 | Msa0706000:CDS | 35.0% |
| ! | GTTGTATTGATGAAGACACT+TGG | - | chr4_4:78889811-78889830 | Msa0706000:intron | 35.0% |
| TTCCTTCCAAATACAATCGA+AGG | + | chr4_4:78889978-78889997 | None:intergenic | 35.0% | |
| ! | TCTCAACTTTTATCAGCACT+CGG | - | chr4_4:78890337-78890356 | Msa0706000:intron | 35.0% |
| CTCTTCATCCAGTAAAATCA+TGG | + | chr4_4:78890598-78890617 | None:intergenic | 35.0% | |
| TCCCAAAAGATATGTTGTGT+AGG | + | chr4_4:78890793-78890812 | None:intergenic | 35.0% | |
| GAGATCGTAACCTAATCCAA+CGG | + | chr4_4:78885362-78885381 | None:intergenic | 40.0% | |
| ! | GAATTTGAGTCTGAGATCGT+TGG | + | chr4_4:78885386-78885405 | None:intergenic | 40.0% |
| CAACAGTACGAAGATTGTCA+TGG | + | chr4_4:78885441-78885460 | None:intergenic | 40.0% | |
| ACACAGGAATTGTTGGCATA+TGG | + | chr4_4:78885934-78885953 | None:intergenic | 40.0% | |
| TATGCCAACAATTCCTGTGT+CGG | - | chr4_4:78885934-78885953 | Msa0706000:CDS | 40.0% | |
| ! | CAACATAGCAAAGCCTTGTA+TGG | + | chr4_4:78885966-78885985 | None:intergenic | 40.0% |
| ! | CATACAAGGCTTTGCTATGT+TGG | - | chr4_4:78885964-78885983 | Msa0706000:CDS | 40.0% |
| AGATTTGTCGTTACTTGGAC+CGG | - | chr4_4:78886019-78886038 | Msa0706000:CDS | 40.0% | |
| ! | TGGGAGTATATAGGGCAATT+TGG | + | chr4_4:78886121-78886140 | None:intergenic | 40.0% |
| TGAACTGCTCTGACATCTAA+AGG | + | chr4_4:78886298-78886317 | None:intergenic | 40.0% | |
| !! | CGTTTCAGTTTTCAGGAGTT+TGG | - | chr4_4:78886369-78886388 | Msa0706000:intron | 40.0% |
| AACAAGCTGTTCCTTCATCA+TGG | - | chr4_4:78886498-78886517 | Msa0706000:intron | 40.0% | |
| ACAAGCTGTTCCTTCATCAT+GGG | - | chr4_4:78886499-78886518 | Msa0706000:intron | 40.0% | |
| AAACATAAAGCAAGAGGGGA+GGG | + | chr4_4:78886577-78886596 | None:intergenic | 40.0% | |
| TAAACATAAAGCAAGAGGGG+AGG | + | chr4_4:78886578-78886597 | None:intergenic | 40.0% | |
| ! | AACACTGATTGACATCGGTA+GGG | + | chr4_4:78886829-78886848 | None:intergenic | 40.0% |
| ! | ACCAGAACACTGATTGACAT+CGG | + | chr4_4:78886834-78886853 | None:intergenic | 40.0% |
| TTTCAAAAAGGGTCTGCGAA+TGG | + | chr4_4:78886858-78886877 | None:intergenic | 40.0% | |
| ! | ATTCGCAGACCCTTTTTGAA+AGG | - | chr4_4:78886857-78886876 | Msa0706000:intron | 40.0% |
| CTGTAGTTGGGGTGAAAATA+GGG | - | chr4_4:78887050-78887069 | Msa0706000:intron | 40.0% | |
| TGTAGTTGGGGTGAAAATAG+GGG | - | chr4_4:78887051-78887070 | Msa0706000:intron | 40.0% | |
| ACATGGCAGACGAATTATTC+AGG | - | chr4_4:78887149-78887168 | Msa0706000:intron | 40.0% | |
| CATGGCAGACGAATTATTCA+GGG | - | chr4_4:78887150-78887169 | Msa0706000:intron | 40.0% | |
| ATGGCAGACGAATTATTCAG+GGG | - | chr4_4:78887151-78887170 | Msa0706000:intron | 40.0% | |
| !!! | TGAAAGAGCGCTCGTTTTAT+AGG | + | chr4_4:78887299-78887318 | None:intergenic | 40.0% |
| TCCCTTACATTGTAGATGGT+AGG | - | chr4_4:78887614-78887633 | Msa0706000:CDS | 40.0% | |
| GTCCTACCATCTACAATGTA+AGG | + | chr4_4:78887619-78887638 | None:intergenic | 40.0% | |
| TTGTAGATGGTAGGACAGAA+AGG | - | chr4_4:78887623-78887642 | Msa0706000:CDS | 40.0% | |
| TATCTCCCATTAAGGTCCTT+TGG | + | chr4_4:78887768-78887787 | None:intergenic | 40.0% | |
| ! | TTATGCTGGCTGTTAGCATA+GGG | + | chr4_4:78887860-78887879 | None:intergenic | 40.0% |
| TCCATTGTCCCTCATAAACT+GGG | + | chr4_4:78887906-78887925 | None:intergenic | 40.0% | |
| ! | TTTATGAGGGACAATGGACT+AGG | - | chr4_4:78887908-78887927 | Msa0706000:intron | 40.0% |
| ATTTACCTCTGTTTCACGGT+AGG | + | chr4_4:78887957-78887976 | None:intergenic | 40.0% | |
| GGCAATGCAAAAACAAGCAT+AGG | + | chr4_4:78888029-78888048 | None:intergenic | 40.0% | |
| ! | TTGTTGCGTTTTCCCTAGTA+AGG | + | chr4_4:78888258-78888277 | None:intergenic | 40.0% |
| TTTATGTGCAAGAGGAAAGG+TGG | - | chr4_4:78888333-78888352 | Msa0706000:intron | 40.0% | |
| AAAATCTCAGCCACAATGAG+TGG | - | chr4_4:78888367-78888386 | Msa0706000:intron | 40.0% | |
| ! | CAGGTTGAGACAAAACAGTT+TGG | + | chr4_4:78888395-78888414 | None:intergenic | 40.0% |
| CCACCAAGTAGAGATGTAAT+TGG | + | chr4_4:78888441-78888460 | None:intergenic | 40.0% | |
| CCAATTACATCTCTACTTGG+TGG | - | chr4_4:78888438-78888457 | Msa0706000:intron | 40.0% | |
| ACGATGTAAGCAACTAAGCA+CGG | - | chr4_4:78888506-78888525 | Msa0706000:intron | 40.0% | |
| TGCGGTATTAGTGATTCCAT+AGG | + | chr4_4:78888572-78888591 | None:intergenic | 40.0% | |
| ACGAGTTTCTCTAACAAACC+AGG | + | chr4_4:78888638-78888657 | None:intergenic | 40.0% | |
| GATGTTCCATAGCATAACAG+TGG | + | chr4_4:78888708-78888727 | None:intergenic | 40.0% | |
| ! | TGTTGTGGCTGTAGTTTTCT+AGG | - | chr4_4:78889056-78889075 | Msa0706000:intron | 40.0% |
| CTGGTTTATCTGCAGTTAGA+AGG | + | chr4_4:78889196-78889215 | None:intergenic | 40.0% | |
| TGATGCAGTTCTTCAATTGC+TGG | + | chr4_4:78889215-78889234 | None:intergenic | 40.0% | |
| !!! | TTTTGGAGTTTCAGCTTCCA+AGG | - | chr4_4:78889237-78889256 | Msa0706000:intron | 40.0% |
| GCTCTATGTAAACACATCAC+CGG | - | chr4_4:78889355-78889374 | Msa0706000:intron | 40.0% | |
| TATAGAGAGAGCAGCATTAC+CGG | + | chr4_4:78889377-78889396 | None:intergenic | 40.0% | |
| GTAATGCTGCTCTCTCTATA+TGG | - | chr4_4:78889377-78889396 | Msa0706000:intron | 40.0% | |
| CTTAAACGGTTGTGTGAAGA+CGG | - | chr4_4:78889465-78889484 | Msa0706000:intron | 40.0% | |
| ACTGACCTCAAACTTCTTGT+AGG | - | chr4_4:78889924-78889943 | Msa0706000:intron | 40.0% | |
| ATCGACCTACAAGAAGTTTG+AGG | + | chr4_4:78889932-78889951 | None:intergenic | 40.0% | |
| AACTTCTTGTAGGTCGATGT+AGG | - | chr4_4:78889934-78889953 | Msa0706000:intron | 40.0% | |
| AACAGGCCTTCGATTGTATT+TGG | - | chr4_4:78889969-78889988 | Msa0706000:intron | 40.0% | |
| GAGCTTCTCTCATATTTGCA+CGG | - | chr4_4:78890134-78890153 | Msa0706000:intron | 40.0% | |
| TTGTCATCGTAGGATTCAAC+AGG | + | chr4_4:78890162-78890181 | None:intergenic | 40.0% | |
| ! | TTTATCAGCACTCGGTTTTC+AGG | - | chr4_4:78890345-78890364 | Msa0706000:intron | 40.0% |
| GAGTTCACATTTACGTCTGA+TGG | + | chr4_4:78890396-78890415 | None:intergenic | 40.0% | |
| GACACAACAGAAATGACTAG+AGG | - | chr4_4:78890477-78890496 | Msa0706000:intron | 40.0% | |
| ACAAGATTTGCCTGGTTACT+GGG | - | chr4_4:78890503-78890522 | Msa0706000:intron | 40.0% | |
| CTTCGGATCAAGTAGTTCAA+CGG | - | chr4_4:78890664-78890683 | Msa0706000:CDS | 40.0% | |
| TTCGGATCAAGTAGTTCAAC+GGG | - | chr4_4:78890665-78890684 | Msa0706000:CDS | 40.0% | |
| TGATCAATCATGATTCCCCT+TGG | - | chr4_4:78890846-78890865 | Msa0706000:five_prime_UTR | 40.0% | |
| ATACAGACACAAAGACCAAG+GGG | + | chr4_4:78890864-78890883 | None:intergenic | 40.0% | |
| CATACAGACACAAAGACCAA+GGG | + | chr4_4:78890865-78890884 | None:intergenic | 40.0% | |
| ACATACAGACACAAAGACCA+AGG | + | chr4_4:78890866-78890885 | None:intergenic | 40.0% | |
| !! | GAAAGCGTCCAAGGATGTTT+AGG | + | chr4_4:78885166-78885185 | None:intergenic | 45.0% |
| GGACAGCACTTTCTTCTTAC+TGG | + | chr4_4:78885320-78885339 | None:intergenic | 45.0% | |
| TTGGGAATTGAAACACGACC+AGG | + | chr4_4:78885469-78885488 | None:intergenic | 45.0% | |
| CAGGAATTGTTGGCATATGG+AGG | + | chr4_4:78885931-78885950 | None:intergenic | 45.0% | |
| ATGCCAACAATTCCTGTGTC+GGG | - | chr4_4:78885935-78885954 | Msa0706000:CDS | 45.0% | |
| ! | TAGCAAAGCCTTGTATGGAC+TGG | + | chr4_4:78885961-78885980 | None:intergenic | 45.0% |
| CAATTCCACTGTCCATTTGC+GGG | + | chr4_4:78885993-78886012 | None:intergenic | 45.0% | |
| CCAATTCCACTGTCCATTTG+CGG | + | chr4_4:78885994-78886013 | None:intergenic | 45.0% | |
| CTGTCTGGTAAGATTCCAAC+AGG | - | chr4_4:78886332-78886351 | Msa0706000:intron | 45.0% | |
| GCAGAATTGAAATGGCCTGT+TGG | + | chr4_4:78886350-78886369 | None:intergenic | 45.0% | |
| ACCAAGAGTCTTGCTTTCGA+TGG | - | chr4_4:78886410-78886429 | Msa0706000:intron | 45.0% | |
| AACATAAAGCAAGAGGGGAG+GGG | + | chr4_4:78886576-78886595 | None:intergenic | 45.0% | |
| ! | GAACACTGATTGACATCGGT+AGG | + | chr4_4:78886830-78886849 | None:intergenic | 45.0% |
| ACCGATGTCAATCAGTGTTC+TGG | - | chr4_4:78886830-78886849 | Msa0706000:CDS | 45.0% | |
| GGAGTGAGGCCTTTCAAAAA+GGG | + | chr4_4:78886869-78886888 | None:intergenic | 45.0% | |
| TATGGAACCCATGCTGTAGT+TGG | - | chr4_4:78887037-78887056 | Msa0706000:intron | 45.0% | |
| ATGGAACCCATGCTGTAGTT+GGG | - | chr4_4:78887038-78887057 | Msa0706000:intron | 45.0% | |
| TTTCACCCCAACTACAGCAT+GGG | + | chr4_4:78887047-78887066 | None:intergenic | 45.0% | |
| ! | TTTTCACCCCAACTACAGCA+TGG | + | chr4_4:78887048-78887067 | None:intergenic | 45.0% |
| GCTGTAGTTGGGGTGAAAAT+AGG | - | chr4_4:78887049-78887068 | Msa0706000:intron | 45.0% | |
| GTAGTTGGGGTGAAAATAGG+GGG | - | chr4_4:78887052-78887071 | Msa0706000:intron | 45.0% | |
| TGTACATCAGAAGGTTGGAG+AGG | + | chr4_4:78887115-78887134 | None:intergenic | 45.0% | |
| !! | TAGCGTTATTTTGTCCAGCC+TGG | + | chr4_4:78887177-78887196 | None:intergenic | 45.0% |
| GAATACTGGCAGGTGAACTA+TGG | - | chr4_4:78887411-78887430 | Msa0706000:intron | 45.0% | |
| ! | GTTATGCTGGCTGTTAGCAT+AGG | + | chr4_4:78887861-78887880 | None:intergenic | 45.0% |
| ATAAACTGGGGGGAAAAGAG+AGG | + | chr4_4:78887893-78887912 | None:intergenic | 45.0% | |
| ! | TCTTTTCCCCCCAGTTTATG+AGG | - | chr4_4:78887894-78887913 | Msa0706000:intron | 45.0% |
| ! | CTTTTCCCCCCAGTTTATGA+GGG | - | chr4_4:78887895-78887914 | Msa0706000:intron | 45.0% |
| ATTGTCCCTCATAAACTGGG+GGG | + | chr4_4:78887903-78887922 | None:intergenic | 45.0% | |
| CATTGTCCCTCATAAACTGG+GGG | + | chr4_4:78887904-78887923 | None:intergenic | 45.0% | |
| CCATTGTCCCTCATAAACTG+GGG | + | chr4_4:78887905-78887924 | None:intergenic | 45.0% | |
| GTCCATTGTCCCTCATAAAC+TGG | + | chr4_4:78887907-78887926 | None:intergenic | 45.0% | |
| AGGATTGAGCTTGAATGTCC+AGG | + | chr4_4:78887937-78887956 | None:intergenic | 45.0% | |
| TCAATCCTACCGTGAAACAG+AGG | - | chr4_4:78887949-78887968 | Msa0706000:intron | 45.0% | |
| TGCAAGAGGAAAGGTGGAAA+TGG | - | chr4_4:78888339-78888358 | Msa0706000:intron | 45.0% | |
| GCAAGAGGAAAGGTGGAAAT+GGG | - | chr4_4:78888340-78888359 | Msa0706000:intron | 45.0% | |
| CTTGGTGGAATAAATGGGAG+TGG | - | chr4_4:78888453-78888472 | Msa0706000:intron | 45.0% | |
| TGCTAGATACACTGTTCTCC+TGG | - | chr4_4:78888617-78888636 | Msa0706000:intron | 45.0% | |
| AAACTACCCAAAGGAGTGGA+GGG | + | chr4_4:78888895-78888914 | None:intergenic | 45.0% | |
| TGTCAAACTACCCAAAGGAG+TGG | + | chr4_4:78888899-78888918 | None:intergenic | 45.0% | |
| TCCTTTGGGTAGTTTGACAG+TGG | - | chr4_4:78888900-78888919 | Msa0706000:intron | 45.0% | |
| ACCACTGTCAAACTACCCAA+AGG | + | chr4_4:78888904-78888923 | None:intergenic | 45.0% | |
| TTTGGGTAGTTTGACAGTGG+TGG | - | chr4_4:78888903-78888922 | Msa0706000:intron | 45.0% | |
| TTGGGTAGTTTGACAGTGGT+GGG | - | chr4_4:78888904-78888923 | Msa0706000:intron | 45.0% | |
| ! | GTTTGACAGTGGTGGGAAAA+TGG | - | chr4_4:78888911-78888930 | Msa0706000:intron | 45.0% |
| AGTTTCAGCTTCCAAGGCAA+TGG | - | chr4_4:78889243-78889262 | Msa0706000:intron | 45.0% | |
| GTTTCAGCTTCCAAGGCAAT+GGG | - | chr4_4:78889244-78889263 | Msa0706000:intron | 45.0% | |
| CTTCTTCCTATCAGGACCAA+GGG | + | chr4_4:78889291-78889310 | None:intergenic | 45.0% | |
| ACTTCTTCCTATCAGGACCA+AGG | + | chr4_4:78889292-78889311 | None:intergenic | 45.0% | |
| !! | AGATTTTGGTCGTCAACGCT+CGG | + | chr4_4:78889710-78889729 | None:intergenic | 45.0% |
| GTAGGAATGAAGCCTGTAAC+AGG | - | chr4_4:78889952-78889971 | Msa0706000:intron | 45.0% | |
| TACAATCGAAGGCCTGTTAC+AGG | + | chr4_4:78889967-78889986 | None:intergenic | 45.0% | |
| GGCCTTCGATTGTATTTGGA+AGG | - | chr4_4:78889973-78889992 | Msa0706000:intron | 45.0% | |
| CAGTTGGAATGTCTTAGGGA+GGG | + | chr4_4:78890043-78890062 | None:intergenic | 45.0% | |
| CCTGCAGTTGGAATGTCTTA+GGG | + | chr4_4:78890047-78890066 | None:intergenic | 45.0% | |
| TCCTGCAGTTGGAATGTCTT+AGG | + | chr4_4:78890048-78890067 | None:intergenic | 45.0% | |
| !! | ACTGGTGCTCACTTTGAAGT+GGG | - | chr4_4:78890192-78890211 | Msa0706000:intron | 45.0% |
| !! | CACTTTGAAGTGGGAGAAAC+TGG | - | chr4_4:78890201-78890220 | Msa0706000:intron | 45.0% |
| ACATTTACGTCTGATGGCTG+TGG | + | chr4_4:78890390-78890409 | None:intergenic | 45.0% | |
| GTGAACTCTGCTTTATACCC+TGG | - | chr4_4:78890408-78890427 | Msa0706000:intron | 45.0% | |
| AACTCTGCTTTATACCCTGG+AGG | - | chr4_4:78890411-78890430 | Msa0706000:intron | 45.0% | |
| ACTCTGCTTTATACCCTGGA+GGG | - | chr4_4:78890412-78890431 | Msa0706000:intron | 45.0% | |
| CAGTAACCAGGCAAATCTTG+TGG | + | chr4_4:78890504-78890523 | None:intergenic | 45.0% | |
| CACAAGATTTGCCTGGTTAC+TGG | - | chr4_4:78890502-78890521 | Msa0706000:intron | 45.0% | |
| ! | GCAAGGCTTTATGTCGAGAA+GGG | - | chr4_4:78890537-78890556 | Msa0706000:CDS | 45.0% |
| !!! | TTCATTTAATTTTTTAAAAT+TGG | - | chr4_4:78887672-78887691 | Msa0706000:CDS | 5.0% |
| !!! | TCATTTAATTTTTTAAAATT+GGG | - | chr4_4:78887673-78887692 | Msa0706000:CDS | 5.0% |
| !! | GGAAGAGAAGAAAGCGTCCA+AGG | + | chr4_4:78885175-78885194 | None:intergenic | 50.0% |
| CTTCGTACTGTTGAGCTTCC+TGG | - | chr4_4:78885448-78885467 | Msa0706000:CDS | 50.0% | |
| TAAACCCCTAGGGTTTGTCC+TGG | - | chr4_4:78885851-78885870 | Msa0706000:CDS | 50.0% | |
| ! | CTAGAGAGGAGCACACTTCT+AGG | + | chr4_4:78885893-78885912 | None:intergenic | 50.0% |
| ! | CTAGAAGTGTGCTCCTCTCT+AGG | - | chr4_4:78885891-78885910 | Msa0706000:CDS | 50.0% |
| !! | CTATGTTGGCTTCCCGCAAA+TGG | - | chr4_4:78885978-78885997 | Msa0706000:CDS | 50.0% |
| CCGCAAATGGACAGTGGAAT+TGG | - | chr4_4:78885991-78886010 | Msa0706000:CDS | 50.0% | |
| GATGTCAGAGCAGTTCAACC+AGG | - | chr4_4:78886301-78886320 | Msa0706000:intron | 50.0% | |
| GCCATCGAAAGCAAGACTCT+TGG | + | chr4_4:78886414-78886433 | None:intergenic | 50.0% | |
| ! | AAAGTACCTTGCCAGTGCAG+CGG | + | chr4_4:78886528-78886547 | None:intergenic | 50.0% |
| GGGAGTGAGGCCTTTCAAAA+AGG | + | chr4_4:78886870-78886889 | None:intergenic | 50.0% | |
| TGGAACCCATGCTGTAGTTG+GGG | - | chr4_4:78887039-78887058 | Msa0706000:intron | 50.0% | |
| AGACGAATTATTCAGGGGCC+AGG | - | chr4_4:78887156-78887175 | Msa0706000:intron | 50.0% | |
| CCCCAGTTTATGAGGGACAA+TGG | - | chr4_4:78887902-78887921 | Msa0706000:intron | 50.0% | |
| !! | GGACAATGGACTAGGATTCC+TGG | - | chr4_4:78887916-78887935 | Msa0706000:intron | 50.0% |
| CAGTTTGGCACCACTCATTG+TGG | + | chr4_4:78888380-78888399 | None:intergenic | 50.0% | |
| AACTACCCAAAGGAGTGGAG+GGG | + | chr4_4:78888894-78888913 | None:intergenic | 50.0% | |
| CAAACTACCCAAAGGAGTGG+AGG | + | chr4_4:78888896-78888915 | None:intergenic | 50.0% | |
| ! | GTGGTGGGAAAATGGAAACG+AGG | - | chr4_4:78888919-78888938 | Msa0706000:intron | 50.0% |
| GGCAAGCTCACCAAATACAG+GGG | + | chr4_4:78889270-78889289 | None:intergenic | 50.0% | |
| GGGCAAGCTCACCAAATACA+GGG | + | chr4_4:78889271-78889290 | None:intergenic | 50.0% | |
| AGGGCAAGCTCACCAAATAC+AGG | + | chr4_4:78889272-78889291 | None:intergenic | 50.0% | |
| ! | GTATTTGGTGAGCTTGCCCT+TGG | - | chr4_4:78889272-78889291 | Msa0706000:intron | 50.0% |
| CTCTGCGACTTCTTCCTATC+AGG | + | chr4_4:78889299-78889318 | None:intergenic | 50.0% | |
| CTTGTGTGACAGAGCATGCT+AGG | + | chr4_4:78889515-78889534 | None:intergenic | 50.0% | |
| !! | ATTTTGGTCGTCAACGCTCG+GGG | + | chr4_4:78889708-78889727 | None:intergenic | 50.0% |
| !! | GATTTTGGTCGTCAACGCTC+GGG | + | chr4_4:78889709-78889728 | None:intergenic | 50.0% |
| ! | GGGAGGATAGGTGCTGTAAA+TGG | + | chr4_4:78890023-78890042 | None:intergenic | 50.0% |
| ATGTCTTAGGGAGGGAGGAT+AGG | + | chr4_4:78890035-78890054 | None:intergenic | 50.0% | |
| TTGGAATGTCTTAGGGAGGG+AGG | + | chr4_4:78890040-78890059 | None:intergenic | 50.0% | |
| GCAGTTGGAATGTCTTAGGG+AGG | + | chr4_4:78890044-78890063 | None:intergenic | 50.0% | |
| CCCTAAGACATTCCAACTGC+AGG | - | chr4_4:78890044-78890063 | Msa0706000:intron | 50.0% | |
| !! | GATTAGTCTCGTCCTGCAGT+TGG | + | chr4_4:78890059-78890078 | None:intergenic | 50.0% |
| CACAACAGCGTTGTCATCGT+AGG | + | chr4_4:78890172-78890191 | None:intergenic | 50.0% | |
| GATGACAACGCTGTTGTGAC+TGG | - | chr4_4:78890174-78890193 | Msa0706000:intron | 50.0% | |
| ! | GACTGGTGCTCACTTTGAAG+TGG | - | chr4_4:78890191-78890210 | Msa0706000:intron | 50.0% |
| ! | GGGAGAAACTGGTCTGAAGA+AGG | - | chr4_4:78890212-78890231 | Msa0706000:intron | 50.0% |
| CCAGATTTCTGAGTCAAGCC+AGG | + | chr4_4:78890312-78890331 | None:intergenic | 50.0% | |
| ! | CCTGGCTTGACTCAGAAATC+TGG | - | chr4_4:78890309-78890328 | Msa0706000:intron | 50.0% |
| TTTACGTCTGATGGCTGTGG+TGG | + | chr4_4:78890387-78890406 | None:intergenic | 50.0% | |
| AGAAGTTTAGGTGCCTGAGC+AGG | + | chr4_4:78890447-78890466 | None:intergenic | 50.0% | |
| AGAGGACCACAAGATTTGCC+TGG | - | chr4_4:78890495-78890514 | Msa0706000:intron | 50.0% | |
| ! | GGCAAGGCTTTATGTCGAGA+AGG | - | chr4_4:78890536-78890555 | Msa0706000:CDS | 50.0% |
| ACCACCAGGACAAACCCTAG+GGG | + | chr4_4:78885858-78885877 | None:intergenic | 55.0% | |
| CACCACCAGGACAAACCCTA+GGG | + | chr4_4:78885859-78885878 | None:intergenic | 55.0% | |
| ACACCACCAGGACAAACCCT+AGG | + | chr4_4:78885860-78885879 | None:intergenic | 55.0% | |
| ! | AGGGTTTGTCCTGGTGGTGT+AGG | - | chr4_4:78885860-78885879 | Msa0706000:CDS | 55.0% |
| GTGTGCTCCTCTCTAGGTCT+CGG | - | chr4_4:78885897-78885916 | Msa0706000:CDS | 55.0% | |
| TGTGCTCCTCTCTAGGTCTC+GGG | - | chr4_4:78885898-78885917 | Msa0706000:CDS | 55.0% | |
| TTCGAACCCGAGACCTAGAG+AGG | + | chr4_4:78885907-78885926 | None:intergenic | 55.0% | |
| TGGCCCGACACAGGAATTGT+TGG | + | chr4_4:78885941-78885960 | None:intergenic | 55.0% | |
| GTCAGAGCAGTTCAACCAGG+AGG | - | chr4_4:78886304-78886323 | Msa0706000:intron | 55.0% | |
| !! | AACCAGGAGGTGTCACTGTC+TGG | - | chr4_4:78886317-78886336 | Msa0706000:intron | 55.0% |
| TACCAGACAGTGACACCTCC+TGG | + | chr4_4:78886322-78886341 | None:intergenic | 55.0% | |
| AAGTACCTTGCCAGTGCAGC+GGG | + | chr4_4:78886527-78886546 | None:intergenic | 55.0% | |
| ATAAAGCAAGAGGGGAGGGG+AGG | + | chr4_4:78886573-78886592 | None:intergenic | 55.0% | |
| AGGCTCTTCCTGGTTGAGAG+CGG | + | chr4_4:78886891-78886910 | None:intergenic | 55.0% | |
| GAATTATTCAGGGGCCAGGC+TGG | - | chr4_4:78887160-78887179 | Msa0706000:intron | 55.0% | |
| CTTCACCCCTCCACTCCTTT+GGG | - | chr4_4:78888886-78888905 | Msa0706000:intron | 55.0% | |
| AATACAGGGGCCCATTGCCT+TGG | + | chr4_4:78889257-78889276 | None:intergenic | 55.0% | |
| AGGCAATGGGCCCCTGTATT+TGG | - | chr4_4:78889257-78889276 | Msa0706000:intron | 55.0% | |
| AGCTTGCCCTTGGTCCTGAT+AGG | - | chr4_4:78889282-78889301 | Msa0706000:intron | 55.0% | |
| CAAGGGTGAAACGAAGCCCT+CGG | + | chr4_4:78889658-78889677 | None:intergenic | 55.0% | |
| CGTCAACGCTCGGGGTTATT+GGG | + | chr4_4:78889700-78889719 | None:intergenic | 55.0% | |
| TCGTCAACGCTCGGGGTTAT+TGG | + | chr4_4:78889701-78889720 | None:intergenic | 55.0% | |
| CCAGGAGAACCATCCCATTC+CGG | + | chr4_4:78890294-78890313 | None:intergenic | 55.0% | |
| GCCTGGTTACTGGGTTGTGT+CGG | - | chr4_4:78890512-78890531 | Msa0706000:CDS | 55.0% | |
| CCTGGTTACTGGGTTGTGTC+GGG | - | chr4_4:78890513-78890532 | Msa0706000:CDS | 55.0% | |
| CTGGTTACTGGGTTGTGTCG+GGG | - | chr4_4:78890514-78890533 | Msa0706000:CDS | 55.0% | |
| TGGTTACTGGGTTGTGTCGG+GGG | - | chr4_4:78890515-78890534 | Msa0706000:CDS | 55.0% | |
| ACCCCTAGGGTTTGTCCTGG+TGG | - | chr4_4:78885854-78885873 | Msa0706000:CDS | 60.0% | |
| ! | GTCCTGGTGGTGTAGGCTTG+CGG | - | chr4_4:78885867-78885886 | Msa0706000:CDS | 60.0% |
| !! | TGTATGGACTGGCCCGACAC+AGG | + | chr4_4:78885950-78885969 | None:intergenic | 60.0% |
| GTGTCGGGCCAGTCCATACA+AGG | - | chr4_4:78885950-78885969 | Msa0706000:CDS | 60.0% | |
| GGCTTCCCGCAAATGGACAG+TGG | - | chr4_4:78885985-78886004 | Msa0706000:CDS | 60.0% | |
| GCAGCGGGATCCCATGATGA+AGG | + | chr4_4:78886512-78886531 | None:intergenic | 60.0% | |
| ATCATGGGATCCCGCTGCAC+TGG | - | chr4_4:78886514-78886533 | Msa0706000:intron | 60.0% | |
| GGCTCTTCCTGGTTGAGAGC+GGG | + | chr4_4:78886890-78886909 | None:intergenic | 60.0% | |
| GCTTCACCCCTCCACTCCTT+TGG | - | chr4_4:78888885-78888904 | Msa0706000:intron | 60.0% | |
| CGCTCTCACACGGGATGCAT+TGG | + | chr4_4:78890271-78890290 | None:intergenic | 60.0% | |
| CCGGAATGGGATGGTTCTCC+TGG | - | chr4_4:78890291-78890310 | Msa0706000:intron | 60.0% | |
| !!! | TGTGGTGGCGGCAGCTTTTG+TGG | + | chr4_4:78890372-78890391 | None:intergenic | 60.0% |
| ACGTCTGATGGCTGTGGTGG+CGG | + | chr4_4:78890384-78890403 | None:intergenic | 60.0% | |
| TTAGGTGCCTGAGCAGGCAC+AGG | + | chr4_4:78890441-78890460 | None:intergenic | 60.0% | |
| CCCGACACAACCCAGTAACC+AGG | + | chr4_4:78890516-78890535 | None:intergenic | 60.0% | |
| CCTGGTTGAGAGCGGGAGTG+AGG | + | chr4_4:78886883-78886902 | None:intergenic | 65.0% | |
| CCTCACTCCCGCTCTCAACC+AGG | - | chr4_4:78886880-78886899 | Msa0706000:intron | 65.0% | |
| ! | TGCATCCCGTGTGAGAGCGC+CGG | - | chr4_4:78890272-78890291 | Msa0706000:intron | 65.0% |
| CCATTCCGGCGCTCTCACAC+GGG | + | chr4_4:78890280-78890299 | None:intergenic | 65.0% | |
| CCCATTCCGGCGCTCTCACA+CGG | + | chr4_4:78890281-78890300 | None:intergenic | 65.0% | |
| !! | CCGTGTGAGAGCGCCGGAAT+GGG | - | chr4_4:78890278-78890297 | Msa0706000:intron | 65.0% |
| !! | GTGAGAGCGCCGGAATGGGA+TGG | - | chr4_4:78890282-78890301 | Msa0706000:intron | 65.0% |
| ACTGGGTTGTGTCGGGGGCA+AGG | - | chr4_4:78890520-78890539 | Msa0706000:CDS | 65.0% | |
| GGCCGCAAGCCTACACCACC+AGG | + | chr4_4:78885872-78885891 | None:intergenic | 70.0% | |
| ! | GGGATCCCGCTGCACTGGCA+AGG | - | chr4_4:78886519-78886538 | Msa0706000:intron | 70.0% |
| !! | CCCGTGTGAGAGCGCCGGAA+TGG | - | chr4_4:78890277-78890296 | Msa0706000:intron | 70.0% |
| CAGGCACAGGAGGCCCTCCA+GGG | + | chr4_4:78890428-78890447 | None:intergenic | 70.0% | |
| AGGGCCTCCTGTGCCTGCTC+AGG | - | chr4_4:78890431-78890450 | Msa0706000:intron | 70.0% | |
| GGTGCCTGAGCAGGCACAGG+AGG | + | chr4_4:78890438-78890457 | None:intergenic | 70.0% | |
| GCAGGCACAGGAGGCCCTCC+AGG | + | chr4_4:78890429-78890448 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 78885130 | 78890943 | 78885130 | ID=Msa0706000;Name=Msa0706000 |
| chr4_4 | mRNA | 78885130 | 78890943 | 78885130 | ID=Msa0706000-mRNA-1;Parent=Msa0706000;Name=Msa0706000-mRNA-1;_AED=0.07;_eAED=0.07;_QI=183|0.83|0.85|1|1|1|7|311|568 |
| chr4_4 | exon | 78885130 | 78886127 | 78885130 | ID=Msa0706000-mRNA-1:exon:25304;Parent=Msa0706000-mRNA-1 |
| chr4_4 | exon | 78886697 | 78886866 | 78886697 | ID=Msa0706000-mRNA-1:exon:25303;Parent=Msa0706000-mRNA-1 |
| chr4_4 | exon | 78887563 | 78887755 | 78887563 | ID=Msa0706000-mRNA-1:exon:25302;Parent=Msa0706000-mRNA-1 |
| chr4_4 | exon | 78888103 | 78888165 | 78888103 | ID=Msa0706000-mRNA-1:exon:25301;Parent=Msa0706000-mRNA-1 |
| chr4_4 | exon | 78888944 | 78889049 | 78888944 | ID=Msa0706000-mRNA-1:exon:25300;Parent=Msa0706000-mRNA-1 |
| chr4_4 | exon | 78889533 | 78889771 | 78889533 | ID=Msa0706000-mRNA-1:exon:25299;Parent=Msa0706000-mRNA-1 |
| chr4_4 | exon | 78890512 | 78890943 | 78890512 | ID=Msa0706000-mRNA-1:exon:25298;Parent=Msa0706000-mRNA-1 |
| chr4_4 | five_prime_UTR | 78890761 | 78890943 | 78890761 | ID=Msa0706000-mRNA-1:five_prime_utr;Parent=Msa0706000-mRNA-1 |
| chr4_4 | CDS | 78890512 | 78890760 | 78890512 | ID=Msa0706000-mRNA-1:cds;Parent=Msa0706000-mRNA-1 |
| chr4_4 | CDS | 78889533 | 78889771 | 78889533 | ID=Msa0706000-mRNA-1:cds;Parent=Msa0706000-mRNA-1 |
| chr4_4 | CDS | 78888944 | 78889049 | 78888944 | ID=Msa0706000-mRNA-1:cds;Parent=Msa0706000-mRNA-1 |
| chr4_4 | CDS | 78888103 | 78888165 | 78888103 | ID=Msa0706000-mRNA-1:cds;Parent=Msa0706000-mRNA-1 |
| chr4_4 | CDS | 78887563 | 78887755 | 78887563 | ID=Msa0706000-mRNA-1:cds;Parent=Msa0706000-mRNA-1 |
| chr4_4 | CDS | 78886697 | 78886866 | 78886697 | ID=Msa0706000-mRNA-1:cds;Parent=Msa0706000-mRNA-1 |
| chr4_4 | CDS | 78885441 | 78886127 | 78885441 | ID=Msa0706000-mRNA-1:cds;Parent=Msa0706000-mRNA-1 |
| chr4_4 | three_prime_UTR | 78885130 | 78885440 | 78885130 | ID=Msa0706000-mRNA-1:three_prime_utr;Parent=Msa0706000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
