Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707230 | XP_013447230.1 | 96.894 | 322 | 8 | 2 | 1 | 320 | 1 | 322 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707230 | sp|C6TAQ0|NRPB_SOYBN | 68.657 | 335 | 78 | 6 | 6 | 320 | 3 | 330 | 9.41e-143 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707230 | A0A072TUZ0 | 96.894 | 322 | 8 | 2 | 1 | 320 | 1 | 322 | 0.0 | 636 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0707230 | Msa1393610 | 0.988583 | 1.365253e-174 | -8.615850e-47 |
| Msa0572850 | Msa0707230 | 0.955559 | 2.295133e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707230 | MtrunA17_Chr8g0388501 | 96.894 | 322 | 8 | 2 | 1 | 320 | 1 | 322 | 0.0 | 636 |
| Msa0707230 | MtrunA17_Chr3g0120061 | 60.237 | 337 | 111 | 4 | 1 | 320 | 1 | 331 | 6.72e-132 | 378 |
| Msa0707230 | MtrunA17_Chr7g0225451 | 50.938 | 320 | 115 | 7 | 6 | 307 | 2 | 297 | 2.48e-98 | 292 |
| Msa0707230 | MtrunA17_Chr7g0243491 | 48.305 | 118 | 57 | 2 | 167 | 281 | 20 | 136 | 6.53e-26 | 106 |
| Msa0707230 | MtrunA17_Chr3g0081541 | 30.729 | 192 | 124 | 2 | 131 | 320 | 193 | 377 | 1.49e-19 | 89.4 |
| Msa0707230 | MtrunA17_Chr2g0311141 | 34.437 | 151 | 88 | 3 | 162 | 305 | 93 | 239 | 5.66e-19 | 87.4 |
| Msa0707230 | MtrunA17_Chr4g0043691 | 37.692 | 130 | 75 | 2 | 179 | 306 | 19 | 144 | 6.31e-19 | 87.8 |
| Msa0707230 | MtrunA17_Chr3g0131611 | 36.567 | 134 | 70 | 3 | 177 | 305 | 14 | 137 | 1.18e-17 | 83.6 |
| Msa0707230 | MtrunA17_Chr3g0081571 | 34.815 | 135 | 79 | 3 | 173 | 305 | 306 | 433 | 3.34e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707230 | AT5G42050.1 | 57.790 | 353 | 100 | 7 | 1 | 309 | 1 | 348 | 1.52e-119 | 348 |
| Msa0707230 | AT3G27090.1 | 52.769 | 307 | 119 | 8 | 10 | 307 | 3 | 292 | 1.19e-96 | 288 |
| Msa0707230 | AT3G27090.2 | 52.769 | 307 | 119 | 8 | 10 | 307 | 3 | 292 | 1.19e-96 | 288 |
| Msa0707230 | AT3G27090.3 | 52.769 | 307 | 119 | 8 | 10 | 307 | 3 | 292 | 1.19e-96 | 288 |
| Msa0707230 | AT5G01660.3 | 41.667 | 120 | 67 | 2 | 177 | 294 | 18 | 136 | 4.89e-25 | 105 |
| Msa0707230 | AT5G01660.2 | 41.667 | 120 | 67 | 2 | 177 | 294 | 18 | 136 | 8.42e-25 | 105 |
| Msa0707230 | AT5G01660.1 | 41.667 | 120 | 67 | 2 | 177 | 294 | 18 | 136 | 8.42e-25 | 105 |
| Msa0707230 | AT3G11000.1 | 42.424 | 132 | 73 | 2 | 177 | 306 | 11 | 141 | 2.68e-24 | 103 |
| Msa0707230 | AT3G11000.2 | 42.424 | 132 | 73 | 2 | 177 | 306 | 130 | 260 | 6.19e-24 | 102 |
| Msa0707230 | AT5G61910.3 | 37.500 | 136 | 77 | 2 | 171 | 305 | 59 | 187 | 2.22e-22 | 98.2 |
| Msa0707230 | AT5G61910.1 | 37.500 | 136 | 77 | 2 | 171 | 305 | 55 | 183 | 2.34e-22 | 98.2 |
| Msa0707230 | AT5G61910.2 | 37.500 | 136 | 77 | 2 | 171 | 305 | 55 | 183 | 2.34e-22 | 98.2 |
| Msa0707230 | AT5G61910.5 | 37.500 | 136 | 77 | 2 | 171 | 305 | 55 | 183 | 3.12e-22 | 97.8 |
| Msa0707230 | AT5G61910.4 | 37.500 | 136 | 77 | 2 | 171 | 305 | 55 | 183 | 5.72e-21 | 94.4 |
| Msa0707230 | AT2G35140.6 | 34.722 | 144 | 88 | 3 | 179 | 320 | 49 | 188 | 1.02e-18 | 87.4 |
| Msa0707230 | AT2G35140.5 | 34.722 | 144 | 88 | 3 | 179 | 320 | 23 | 162 | 1.14e-18 | 87.4 |
| Msa0707230 | AT2G35140.1 | 34.722 | 144 | 88 | 3 | 179 | 320 | 23 | 162 | 1.14e-18 | 87.4 |
| Msa0707230 | AT2G35140.4 | 34.722 | 144 | 88 | 3 | 179 | 320 | 23 | 162 | 1.14e-18 | 87.4 |
| Msa0707230 | AT2G35140.2 | 34.722 | 144 | 88 | 3 | 179 | 320 | 23 | 162 | 1.14e-18 | 87.4 |
| Msa0707230 | AT2G35140.3 | 34.722 | 144 | 88 | 3 | 179 | 320 | 23 | 162 | 1.14e-18 | 87.4 |
| Msa0707230 | AT2G32910.1 | 29.536 | 237 | 141 | 9 | 77 | 305 | 224 | 442 | 3.91e-18 | 85.5 |
Find 85 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGTTGTGTCAGCATAAA+AGG | 0.132335 | 4_4:+80457866 | Msa0707230:exon |
| ACTTGATATGTTTCAACTTC+TGG | 0.192127 | 4_4:+80458263 | Msa0707230:three_prime_UTR |
| CGGTTGAATGGTTCATTATA+GGG | 0.238859 | 4_4:+80458198 | Msa0707230:three_prime_UTR |
| ACACTAGATAATTAGAGATT+TGG | 0.253892 | 4_4:+80457951 | Msa0707230:three_prime_UTR |
| CCTAACTGAATCCCTGTATC+TGG | 0.267819 | 4_4:-80457026 | None:intergenic |
| TGGTATAGTTGTAAAGAAAA+AGG | 0.278735 | 4_4:-80457069 | None:intergenic |
| GTTGGTGTTTCTCCTATTAA+TGG | 0.279410 | 4_4:+80455572 | Msa0707230:CDS |
| TTATTAAAACCTCCATTAAT+AGG | 0.287108 | 4_4:-80455584 | None:intergenic |
| ACGGTTGAATGGTTCATTAT+AGG | 0.296900 | 4_4:+80458197 | Msa0707230:three_prime_UTR |
| TATGCAAAGCTGCCAATTTA+CGG | 0.297962 | 4_4:+80458178 | Msa0707230:three_prime_UTR |
| TGAACCATTCAACCGTAAAT+TGG | 0.312036 | 4_4:-80458190 | None:intergenic |
| ATTTATTCAAAGCCTTCTTA+TGG | 0.312416 | 4_4:+80455611 | Msa0707230:CDS |
| TCAGTTAGGGCCATTACTCC+TGG | 0.331278 | 4_4:+80457040 | Msa0707230:CDS |
| ATTAGGGTTTGAATTCTTCT+TGG | 0.332710 | 4_4:-80455702 | None:intergenic |
| CACTAGATAATTAGAGATTT+GGG | 0.337887 | 4_4:+80457952 | Msa0707230:three_prime_UTR |
| TATCTCTTAATGATTCAATC+TGG | 0.342706 | 4_4:+80455396 | Msa0707230:CDS |
| AGATTGAATCATTAAGAGAT+AGG | 0.365054 | 4_4:-80455394 | None:intergenic |
| TAGGTTTGCCTCCCAGATAC+AGG | 0.367382 | 4_4:+80457014 | Msa0707230:intron |
| CCAGATACAGGGATTCAGTT+AGG | 0.380760 | 4_4:+80457026 | Msa0707230:CDS |
| CCACCAATGGTTTCATTCCT+AGG | 0.384980 | 4_4:-80455827 | None:intergenic |
| TTCTTCTTGGAAGATTTAGA+TGG | 0.386595 | 4_4:-80455689 | None:intergenic |
| AACAACAACTCTGTTTCTCT+TGG | 0.386776 | 4_4:+80455491 | Msa0707230:CDS |
| TTATTGAAATGATCAGAAAC+AGG | 0.392314 | 4_4:-80455521 | None:intergenic |
| TTTGTTTAGGCTGCAAGTTT+TGG | 0.392417 | 4_4:+80457322 | Msa0707230:intron |
| CAAATTACTACAAAGAATAA+AGG | 0.401147 | 4_4:+80457900 | Msa0707230:three_prime_UTR |
| TCTGATCATTTCAATAATCA+AGG | 0.410681 | 4_4:+80455527 | Msa0707230:CDS |
| AATCTCAAAAGGCAACTCTT+TGG | 0.419984 | 4_4:+80455887 | Msa0707230:CDS |
| CCATCATAGTGGTGAAGAAC+TGG | 0.427123 | 4_4:-80457657 | None:intergenic |
| TGCTTCCAACGACACTTTCA+AGG | 0.433408 | 4_4:+80457848 | Msa0707230:CDS |
| ATCTCTTAATGATTCAATCT+GGG | 0.445296 | 4_4:+80455397 | Msa0707230:CDS |
| TTAAAATTCCCACCATAAGA+AGG | 0.446938 | 4_4:-80455623 | None:intergenic |
| AAATATTGATCCAACGGCTT+GGG | 0.453134 | 4_4:+80457351 | Msa0707230:CDS |
| CACTAGAAGAGGATTCATTC+AGG | 0.455058 | 4_4:+80457634 | Msa0707230:CDS |
| CGAATCTCGTTTCCCTGCTC+AGG | 0.457693 | 4_4:+80457393 | Msa0707230:CDS |
| TACAGGTAAGAGTGCTTACT+AGG | 0.458108 | 4_4:+80457598 | Msa0707230:intron |
| GCTGCCAATTTACGGTTGAA+TGG | 0.466789 | 4_4:+80458186 | Msa0707230:three_prime_UTR |
| TCTCTTGTCAGCAGCCGCCT+TGG | 0.468255 | 4_4:-80455774 | None:intergenic |
| TTCTTGTCCTCCCAAGCCGT+TGG | 0.480092 | 4_4:-80457361 | None:intergenic |
| CAGTTAGGGCCATTACTCCT+GGG | 0.491247 | 4_4:+80457041 | Msa0707230:CDS |
| AATGAAAATGATACCTGAGC+AGG | 0.497887 | 4_4:-80457406 | None:intergenic |
| AAGGTTGTGTCAGCATAAAA+GGG | 0.500936 | 4_4:+80457867 | Msa0707230:exon |
| AGCTCTATAACACAATATAT+AGG | 0.508792 | 4_4:-80458051 | None:intergenic |
| GTTGTAGGCATTGTCTCTGC+TGG | 0.511637 | 4_4:+80457806 | Msa0707230:intron |
| CAGATACAGGGATTCAGTTA+GGG | 0.515717 | 4_4:+80457027 | Msa0707230:CDS |
| CCAGTTCTTCACCACTATGA+TGG | 0.516230 | 4_4:+80457657 | Msa0707230:CDS |
| TGGGAGGACAAGAAGTGTGC+TGG | 0.518213 | 4_4:+80457370 | Msa0707230:CDS |
| TATTCAAAGCCTTCTTATGG+TGG | 0.524188 | 4_4:+80455614 | Msa0707230:CDS |
| CAAATATTGATCCAACGGCT+TGG | 0.524783 | 4_4:+80457350 | Msa0707230:CDS |
| CTAACTGAATCCCTGTATCT+GGG | 0.538745 | 4_4:-80457025 | None:intergenic |
| AAGGGGCAACCCAGGAGTAA+TGG | 0.541588 | 4_4:-80457050 | None:intergenic |
| ATTCAAAGCCTTCTTATGGT+GGG | 0.541890 | 4_4:+80455615 | Msa0707230:CDS |
| TATTGATCCAACGGCTTGGG+AGG | 0.545418 | 4_4:+80457354 | Msa0707230:CDS |
| GGTGTTTCTCCTATTAATGG+AGG | 0.546103 | 4_4:+80455575 | Msa0707230:CDS |
| CACAACCTTGAAAGTGTCGT+TGG | 0.548994 | 4_4:-80457853 | None:intergenic |
| AGTAACATGAATGTTACTAA+AGG | 0.551944 | 4_4:+80455647 | Msa0707230:CDS |
| CTGAATGAATCCTCTTCTAG+TGG | 0.554234 | 4_4:-80457633 | None:intergenic |
| CCATGGCTGAGAATCTCAAA+AGG | 0.555325 | 4_4:+80455876 | Msa0707230:CDS |
| AGGTTTGCCTCCCAGATACA+GGG | 0.571707 | 4_4:+80457015 | Msa0707230:intron |
| CACCAGCAGAGTCTCTTCCT+AGG | 0.573046 | 4_4:+80455810 | Msa0707230:CDS |
| GGGGAGAACAATAACAGTGA+TGG | 0.573073 | 4_4:+80455734 | Msa0707230:CDS |
| CCTAGGAATGAAACCATTGG+TGG | 0.576885 | 4_4:+80455827 | Msa0707230:CDS |
| TTCAGCTCAAGACGGAACTT+AGG | 0.577473 | 4_4:-80457681 | None:intergenic |
| GGAACTTAGGTCCATCATAG+TGG | 0.580135 | 4_4:-80457668 | None:intergenic |
| TATACCACTCACCAACTCCA+TGG | 0.580365 | 4_4:+80457085 | Msa0707230:CDS |
| CTTCCTAGGAATGAAACCAT+TGG | 0.584075 | 4_4:+80455824 | Msa0707230:CDS |
| TTCCTAGGAAGAGACTCTGC+TGG | 0.585025 | 4_4:-80455812 | None:intergenic |
| AACATGTGAGCCACTAGAAG+AGG | 0.589083 | 4_4:+80457623 | Msa0707230:CDS |
| ATGAAAATGATACCTGAGCA+GGG | 0.598544 | 4_4:-80457405 | None:intergenic |
| GGTTTGCTAGATTTGATGTG+TGG | 0.599698 | 4_4:-80455373 | None:intergenic |
| TCTCTTAATGATTCAATCTG+GGG | 0.606044 | 4_4:+80455398 | Msa0707230:CDS |
| TGGAACAAATATTGATCCAA+CGG | 0.610123 | 4_4:+80457345 | Msa0707230:CDS |
| AAATAAGAACAAGGATTCCA+AGG | 0.613003 | 4_4:+80455757 | Msa0707230:CDS |
| CAGTGATGGAAATAAGAACA+AGG | 0.622810 | 4_4:+80455748 | Msa0707230:CDS |
| AACTCCATGGAGTTGGTGAG+TGG | 0.632771 | 4_4:-80457089 | None:intergenic |
| TATTGAAATGATCAGAAACA+GGG | 0.638940 | 4_4:-80455520 | None:intergenic |
| CTAGGAATGAAACCATTGGT+GGG | 0.642582 | 4_4:+80455828 | Msa0707230:CDS |
| GACAAAGATATACCCACCAA+TGG | 0.644157 | 4_4:-80455840 | None:intergenic |
| CTAGGAAGAGACTCTGCTGG+TGG | 0.665578 | 4_4:-80455809 | None:intergenic |
| CAGGCACATTCAGCTCAAGA+CGG | 0.668323 | 4_4:-80457689 | None:intergenic |
| TCTTGAGCTGAATGTGCCTG+AGG | 0.674355 | 4_4:+80457692 | Msa0707230:CDS |
| TTACATATACACATACACAT+AGG | 0.682964 | 4_4:+80455263 | Msa0707230:five_prime_UTR |
| TGTCTGTAACAATGATACCA+TGG | 0.683554 | 4_4:+80455859 | Msa0707230:CDS |
| ATTGAAATGATCAGAAACAG+GGG | 0.684933 | 4_4:-80455519 | None:intergenic |
| ACTGAATCCCTGTATCTGGG+AGG | 0.733702 | 4_4:-80457022 | None:intergenic |
| TAAGAACAAGGATTCCAAGG+CGG | 0.748891 | 4_4:+80455760 | Msa0707230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGACAAAATTTTTTTA+AGG | + | chr4_4:80456053-80456072 | Msa0707230:intron | 10.0% |
| !!! | AAAATTTTTTTAAGGTAAAA+AGG | + | chr4_4:80456061-80456080 | Msa0707230:intron | 10.0% |
| !! | TAAACAAAATTAAAAAAATG+GGG | - | chr4_4:80456399-80456418 | None:intergenic | 10.0% |
| !! | ATAATATATTTACTATAGAT+TGG | + | chr4_4:80456848-80456867 | Msa0707230:intron | 10.0% |
| !! | TGAAATAATTAAAAAAAAAG+GGG | - | chr4_4:80457756-80457775 | None:intergenic | 10.0% |
| !!! | AATTGTTTTTTACATATATA+CGG | - | chr4_4:80458016-80458035 | None:intergenic | 10.0% |
| !!! | ATTATTTCCCTTTTTTTTTT+TGG | + | chr4_4:80455998-80456017 | Msa0707230:intron | 15.0% |
| !!! | TGAGTTTTTATTTGAAAATT+CGG | + | chr4_4:80456228-80456247 | Msa0707230:intron | 15.0% |
| !!! | TATAAGTTAAAGTGTAATTT+TGG | + | chr4_4:80456427-80456446 | Msa0707230:intron | 15.0% |
| !!! | ATAAGTTAAAGTGTAATTTT+GGG | + | chr4_4:80456428-80456447 | Msa0707230:intron | 15.0% |
| !! | GAAATAATTAAAAAAAAAGG+GGG | - | chr4_4:80457755-80457774 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTATATATAGCTA+CGG | + | chr4_4:80457975-80457994 | Msa0707230:three_prime_UTR | 15.0% |
| !!! | TTTCAAGTTTTGTGAAAAAA+TGG | + | chr4_4:80455295-80455314 | Msa0707230:exon | 20.0% |
| !!! | AAAAAGATTGTTGATTGTTA+TGG | - | chr4_4:80455328-80455347 | None:intergenic | 20.0% |
| !!! | ATAACAATCAACAATCTTTT+TGG | + | chr4_4:80455327-80455346 | Msa0707230:CDS | 20.0% |
| !!! | AAAATTTCTCCTTTGATTTT+TGG | - | chr4_4:80455441-80455460 | None:intergenic | 20.0% |
| !!! | AGAAATTTTGATACAAAACT+TGG | + | chr4_4:80455452-80455471 | Msa0707230:CDS | 20.0% |
| !! | TTATTAAAACCTCCATTAAT+AGG | - | chr4_4:80455587-80455606 | None:intergenic | 20.0% |
| !!! | TATTAATGGAGGTTTTAATA+AGG | + | chr4_4:80455586-80455605 | Msa0707230:CDS | 20.0% |
| !!! | ATTAATGGAGGTTTTAATAA+GGG | + | chr4_4:80455587-80455606 | Msa0707230:CDS | 20.0% |
| !! | ATAATTGAAGGAAACAATTT+AGG | - | chr4_4:80455929-80455948 | None:intergenic | 20.0% |
| !! | AATAAGAATTGCATAATTGA+AGG | - | chr4_4:80455941-80455960 | None:intergenic | 20.0% |
| !! | AATCGAACCAAAAAAAAAAA+GGG | - | chr4_4:80456008-80456027 | None:intergenic | 20.0% |
| !! | TAATCGAACCAAAAAAAAAA+AGG | - | chr4_4:80456009-80456028 | None:intergenic | 20.0% |
| !! | TTATTTGAAAATTCGGTATT+CGG | + | chr4_4:80456235-80456254 | Msa0707230:intron | 20.0% |
| !!! | ATTTTACTTCTGTCTTAAAT+GGG | - | chr4_4:80456296-80456315 | None:intergenic | 20.0% |
| !!! | AATTTTACTTCTGTCTTAAA+TGG | - | chr4_4:80456297-80456316 | None:intergenic | 20.0% |
| !!! | ATTTTCGAAGTAATTTATTC+CGG | - | chr4_4:80456486-80456505 | None:intergenic | 20.0% |
| !! | GTAAATATATTATGCTTCTA+TGG | - | chr4_4:80456841-80456860 | None:intergenic | 20.0% |
| !! | AAAAACATAATTGATACTGA+AGG | - | chr4_4:80456969-80456988 | None:intergenic | 20.0% |
| !!! | CACAATTTTAATGGATAATT+CGG | - | chr4_4:80457192-80457211 | None:intergenic | 20.0% |
| !! | CAAAATGTATTCAAATTATG+AGG | - | chr4_4:80457245-80457264 | None:intergenic | 20.0% |
| !!! | CTCATAATTTGAATACATTT+TGG | + | chr4_4:80457243-80457262 | Msa0707230:intron | 20.0% |
| !! | TCTTTAACATTGATAAATAC+AGG | + | chr4_4:80457581-80457600 | Msa0707230:intron | 20.0% |
| !! | CAAATTACTACAAAGAATAA+AGG | + | chr4_4:80457900-80457919 | Msa0707230:three_prime_UTR | 20.0% |
| !! | TATGTAAAAAACAATTTGAG+AGG | + | chr4_4:80458020-80458039 | Msa0707230:three_prime_UTR | 20.0% |
| ! | TTACATATACACATACACAT+AGG | + | chr4_4:80455263-80455282 | Msa0707230:five_prime_UTR | 25.0% |
| ! | AGATTGAATCATTAAGAGAT+AGG | - | chr4_4:80455397-80455416 | None:intergenic | 25.0% |
| ! | TATCTCTTAATGATTCAATC+TGG | + | chr4_4:80455396-80455415 | Msa0707230:CDS | 25.0% |
| ! | ATCTCTTAATGATTCAATCT+GGG | + | chr4_4:80455397-80455416 | Msa0707230:CDS | 25.0% |
| !!! | AATTTTGATACAAAACTTGG+TGG | + | chr4_4:80455455-80455474 | Msa0707230:CDS | 25.0% |
| ! | TATTGAAATGATCAGAAACA+GGG | - | chr4_4:80455523-80455542 | None:intergenic | 25.0% |
| ! | TTATTGAAATGATCAGAAAC+AGG | - | chr4_4:80455524-80455543 | None:intergenic | 25.0% |
| ! | TCTGATCATTTCAATAATCA+AGG | + | chr4_4:80455527-80455546 | Msa0707230:CDS | 25.0% |
| !!! | TCTTTTTTCTCTTTTGATGT+TGG | + | chr4_4:80455554-80455573 | Msa0707230:CDS | 25.0% |
| ! | ATTTATTCAAAGCCTTCTTA+TGG | + | chr4_4:80455611-80455630 | Msa0707230:CDS | 25.0% |
| ! | AGTAACATGAATGTTACTAA+AGG | + | chr4_4:80455647-80455666 | Msa0707230:CDS | 25.0% |
| ! | TCAAACCCTAATAAAAAACA+AGG | + | chr4_4:80455713-80455732 | Msa0707230:CDS | 25.0% |
| ! | CAAACCCTAATAAAAAACAA+GGG | + | chr4_4:80455714-80455733 | Msa0707230:CDS | 25.0% |
| ! | AAACCCTAATAAAAAACAAG+GGG | + | chr4_4:80455715-80455734 | Msa0707230:CDS | 25.0% |
| !! | TTTTCGAAGTAATTTATTCC+GGG | - | chr4_4:80456485-80456504 | None:intergenic | 25.0% |
| !!! | TTTATTTTGGTTACCATGTA+TGG | + | chr4_4:80456729-80456748 | Msa0707230:intron | 25.0% |
| !!! | TTATTTTGGTTACCATGTAT+GGG | + | chr4_4:80456730-80456749 | Msa0707230:intron | 25.0% |
| ! | AACAATAACTGCAAAATTTC+AGG | - | chr4_4:80456812-80456831 | None:intergenic | 25.0% |
| ! | AATGTCAATTGCAATATTTG+AGG | + | chr4_4:80456912-80456931 | Msa0707230:intron | 25.0% |
| !! | TTGTGAATGTTTGTGTTTTT+AGG | + | chr4_4:80456995-80457014 | Msa0707230:intron | 25.0% |
| ! | GTATAGTTGTAAAGAAAAAG+GGG | - | chr4_4:80457070-80457089 | None:intergenic | 25.0% |
| ! | GGTATAGTTGTAAAGAAAAA+GGG | - | chr4_4:80457071-80457090 | None:intergenic | 25.0% |
| ! | TGGTATAGTTGTAAAGAAAA+AGG | - | chr4_4:80457072-80457091 | None:intergenic | 25.0% |
| ! | ATTTATGAGACTGTTAGTTA+GGG | + | chr4_4:80457163-80457182 | Msa0707230:intron | 25.0% |
| ! | ATCCATTAAAATTGTGCATT+AGG | + | chr4_4:80457196-80457215 | Msa0707230:intron | 25.0% |
| !! | TAAACTGTGCTTTCTTTTAT+GGG | + | chr4_4:80457784-80457803 | Msa0707230:intron | 25.0% |
| ! | ACACTAGATAATTAGAGATT+TGG | + | chr4_4:80457951-80457970 | Msa0707230:three_prime_UTR | 25.0% |
| ! | CACTAGATAATTAGAGATTT+GGG | + | chr4_4:80457952-80457971 | Msa0707230:three_prime_UTR | 25.0% |
| ! | AGCTCTATAACACAATATAT+AGG | - | chr4_4:80458054-80458073 | None:intergenic | 25.0% |
| !! | TGTCCAATTTTTCTTTTGTT+TGG | + | chr4_4:80458086-80458105 | Msa0707230:three_prime_UTR | 25.0% |
| !!! | GTCCAATTTTTCTTTTGTTT+GGG | + | chr4_4:80458087-80458106 | Msa0707230:three_prime_UTR | 25.0% |
| ! | ATCCCAAACAAAAGAAAAAT+TGG | - | chr4_4:80458092-80458111 | None:intergenic | 25.0% |
| !! | GTATTGAACTATTTTGCTTT+TGG | + | chr4_4:80458151-80458170 | Msa0707230:three_prime_UTR | 25.0% |
| TCTCTTAATGATTCAATCTG+GGG | + | chr4_4:80455398-80455417 | Msa0707230:CDS | 30.0% | |
| !! | ATTTCTCCTTTGATTTTTGG+AGG | - | chr4_4:80455438-80455457 | None:intergenic | 30.0% |
| ATTGAAATGATCAGAAACAG+GGG | - | chr4_4:80455522-80455541 | None:intergenic | 30.0% | |
| TTAAAATTCCCACCATAAGA+AGG | - | chr4_4:80455626-80455645 | None:intergenic | 30.0% | |
| TTCTTCTTGGAAGATTTAGA+TGG | - | chr4_4:80455692-80455711 | None:intergenic | 30.0% | |
| ATTAGGGTTTGAATTCTTCT+TGG | - | chr4_4:80455705-80455724 | None:intergenic | 30.0% | |
| !!! | TCTCCCCTTGTTTTTTATTA+GGG | - | chr4_4:80455721-80455740 | None:intergenic | 30.0% |
| !!! | TTCTCCCCTTGTTTTTTATT+AGG | - | chr4_4:80455722-80455741 | None:intergenic | 30.0% |
| AAATAAGAACAAGGATTCCA+AGG | + | chr4_4:80455757-80455776 | Msa0707230:CDS | 30.0% | |
| GGAAACAATTTAGGAAAGAA+AGG | - | chr4_4:80455920-80455939 | None:intergenic | 30.0% | |
| GTTTAGCTACTCGAATAATA+TGG | + | chr4_4:80456450-80456469 | Msa0707230:intron | 30.0% | |
| ATAATATGGATTTAGCTACC+CGG | + | chr4_4:80456464-80456483 | Msa0707230:intron | 30.0% | |
| !! | TTCTCTATGTACTTGCTATA+GGG | - | chr4_4:80456585-80456604 | None:intergenic | 30.0% |
| !!! | GTCTATCTGTAGCTTTATTT+TGG | + | chr4_4:80456716-80456735 | Msa0707230:intron | 30.0% |
| !!! | TATTTTGGTTACCATGTATG+GGG | + | chr4_4:80456731-80456750 | Msa0707230:intron | 30.0% |
| TGATATCAATATCACTGTAC+TGG | + | chr4_4:80456754-80456773 | Msa0707230:intron | 30.0% | |
| ACAGGTTATAATCCCTTATA+TGG | - | chr4_4:80456882-80456901 | None:intergenic | 30.0% | |
| TTGACATTGAATTGAAGAAC+AGG | - | chr4_4:80456900-80456919 | None:intergenic | 30.0% | |
| !!! | TTTTTGAGGTATGTGTTACT+TGG | + | chr4_4:80457110-80457129 | Msa0707230:intron | 30.0% |
| ACAGTCTCATAAATGTGATT+AGG | - | chr4_4:80457157-80457176 | None:intergenic | 30.0% | |
| CATTTATGAGACTGTTAGTT+AGG | + | chr4_4:80457162-80457181 | Msa0707230:intron | 30.0% | |
| ! | TGCCTAATGCACAATTTTAA+TGG | - | chr4_4:80457201-80457220 | None:intergenic | 30.0% |
| ATGTATTCAAATTATGAGGC+TGG | - | chr4_4:80457241-80457260 | None:intergenic | 30.0% | |
| TGGAACAAATATTGATCCAA+CGG | + | chr4_4:80457345-80457364 | Msa0707230:CDS | 30.0% | |
| ! | CATTTTCATTCCAACCTTTA+CGG | + | chr4_4:80457419-80457438 | Msa0707230:intron | 30.0% |
| !!! | TGTTTTGATCTTCTAGTTTG+TGG | + | chr4_4:80457542-80457561 | Msa0707230:intron | 30.0% |
| ! | CTAAACTGTGCTTTCTTTTA+TGG | + | chr4_4:80457783-80457802 | Msa0707230:intron | 30.0% |
| ACTTGATATGTTTCAACTTC+TGG | + | chr4_4:80458263-80458282 | Msa0707230:three_prime_UTR | 30.0% | |
| AACAGAGAACAAAAAGCAGT+TGG | - | chr4_4:80455226-80455245 | None:intergenic | 35.0% | |
| ACTCATCCTCCAAAAATCAA+AGG | + | chr4_4:80455429-80455448 | Msa0707230:CDS | 35.0% | |
| ! | AACAACAACTCTGTTTCTCT+TGG | + | chr4_4:80455491-80455510 | Msa0707230:CDS | 35.0% |
| ! | GTTGGTGTTTCTCCTATTAA+TGG | + | chr4_4:80455572-80455591 | Msa0707230:CDS | 35.0% |
| TATTCAAAGCCTTCTTATGG+TGG | + | chr4_4:80455614-80455633 | Msa0707230:CDS | 35.0% | |
| ATTCAAAGCCTTCTTATGGT+GGG | + | chr4_4:80455615-80455634 | Msa0707230:CDS | 35.0% | |
| ! | CAGTGATGGAAATAAGAACA+AGG | + | chr4_4:80455748-80455767 | Msa0707230:CDS | 35.0% |
| TGTCTGTAACAATGATACCA+TGG | + | chr4_4:80455859-80455878 | Msa0707230:CDS | 35.0% | |
| AATCTCAAAAGGCAACTCTT+TGG | + | chr4_4:80455887-80455906 | Msa0707230:CDS | 35.0% | |
| !! | GTTCTCTATGTACTTGCTAT+AGG | - | chr4_4:80456586-80456605 | None:intergenic | 35.0% |
| ! | AGCTAGCCAAATTTTGTTGA+GGG | - | chr4_4:80456664-80456683 | None:intergenic | 35.0% |
| ! | AAGCTAGCCAAATTTTGTTG+AGG | - | chr4_4:80456665-80456684 | None:intergenic | 35.0% |
| AATCAGATAACATATACCCC+CGG | - | chr4_4:80456696-80456715 | None:intergenic | 35.0% | |
| TATTGATATCACCCCATACA+TGG | - | chr4_4:80456745-80456764 | None:intergenic | 35.0% | |
| ATTGGTGTGTTAGCCATATA+AGG | + | chr4_4:80456866-80456885 | Msa0707230:intron | 35.0% | |
| TTGGTGTGTTAGCCATATAA+GGG | + | chr4_4:80456867-80456886 | Msa0707230:intron | 35.0% | |
| TAATGTTACGTCGTAACATG+TGG | + | chr4_4:80457287-80457306 | Msa0707230:intron | 35.0% | |
| ! | TTTGTTTAGGCTGCAAGTTT+TGG | + | chr4_4:80457322-80457341 | Msa0707230:intron | 35.0% |
| AAATATTGATCCAACGGCTT+GGG | + | chr4_4:80457351-80457370 | Msa0707230:CDS | 35.0% | |
| ATGAAAATGATACCTGAGCA+GGG | - | chr4_4:80457408-80457427 | None:intergenic | 35.0% | |
| AATGAAAATGATACCTGAGC+AGG | - | chr4_4:80457409-80457428 | None:intergenic | 35.0% | |
| !! | TGCTTTCTTTTATGGGTTGT+AGG | + | chr4_4:80457791-80457810 | Msa0707230:intron | 35.0% |
| AAGGTTGTGTCAGCATAAAA+GGG | + | chr4_4:80457867-80457886 | Msa0707230:exon | 35.0% | |
| TATGCAAAGCTGCCAATTTA+CGG | + | chr4_4:80458178-80458197 | Msa0707230:three_prime_UTR | 35.0% | |
| TGAACCATTCAACCGTAAAT+TGG | - | chr4_4:80458193-80458212 | None:intergenic | 35.0% | |
| ACGGTTGAATGGTTCATTAT+AGG | + | chr4_4:80458197-80458216 | Msa0707230:three_prime_UTR | 35.0% | |
| CGGTTGAATGGTTCATTATA+GGG | + | chr4_4:80458198-80458217 | Msa0707230:three_prime_UTR | 35.0% | |
| !! | GGTTTGCTAGATTTGATGTG+TGG | - | chr4_4:80455376-80455395 | None:intergenic | 40.0% |
| GGTGTTTCTCCTATTAATGG+AGG | + | chr4_4:80455575-80455594 | Msa0707230:CDS | 40.0% | |
| TAAGAACAAGGATTCCAAGG+CGG | + | chr4_4:80455760-80455779 | Msa0707230:CDS | 40.0% | |
| CTTCCTAGGAATGAAACCAT+TGG | + | chr4_4:80455824-80455843 | Msa0707230:CDS | 40.0% | |
| CTAGGAATGAAACCATTGGT+GGG | + | chr4_4:80455828-80455847 | Msa0707230:CDS | 40.0% | |
| GACAAAGATATACCCACCAA+TGG | - | chr4_4:80455843-80455862 | None:intergenic | 40.0% | |
| AATTGACACGAGTGTATGAG+TGG | + | chr4_4:80456338-80456357 | Msa0707230:intron | 40.0% | |
| ! | TGAAGCATAGTCTTAGCTTG+CGG | + | chr4_4:80456361-80456380 | Msa0707230:intron | 40.0% |
| TTAAAAAAATGGGGCAGCCA+AGG | - | chr4_4:80456390-80456409 | None:intergenic | 40.0% | |
| ! | CTAGCCAAATTTTGTTGAGG+GGG | - | chr4_4:80456662-80456681 | None:intergenic | 40.0% |
| ! | GCTAGCCAAATTTTGTTGAG+GGG | - | chr4_4:80456663-80456682 | None:intergenic | 40.0% |
| CTAACTGAATCCCTGTATCT+GGG | - | chr4_4:80457028-80457047 | None:intergenic | 40.0% | |
| CAGATACAGGGATTCAGTTA+GGG | + | chr4_4:80457027-80457046 | Msa0707230:CDS | 40.0% | |
| CACATACCTCAAAAACTCCA+TGG | - | chr4_4:80457105-80457124 | None:intergenic | 40.0% | |
| CAAATATTGATCCAACGGCT+TGG | + | chr4_4:80457350-80457369 | Msa0707230:CDS | 40.0% | |
| CATACTAAAGCCGTAAAGGT+TGG | - | chr4_4:80457432-80457451 | None:intergenic | 40.0% | |
| ! | CAACCTTTACGGCTTTAGTA+TGG | + | chr4_4:80457430-80457449 | Msa0707230:intron | 40.0% |
| TGTCTCGTCTCTACTCTTTA+CGG | - | chr4_4:80457464-80457483 | None:intergenic | 40.0% | |
| GACGAGACAGTAGATTTAGA+CGG | + | chr4_4:80457475-80457494 | Msa0707230:intron | 40.0% | |
| !! | TACAGGTAAGAGTGCTTACT+AGG | + | chr4_4:80457598-80457617 | Msa0707230:intron | 40.0% |
| CTGAATGAATCCTCTTCTAG+TGG | - | chr4_4:80457636-80457655 | None:intergenic | 40.0% | |
| CACTAGAAGAGGATTCATTC+AGG | + | chr4_4:80457634-80457653 | Msa0707230:CDS | 40.0% | |
| AGTGAACGATCAAATACCTC+AGG | - | chr4_4:80457711-80457730 | None:intergenic | 40.0% | |
| CACTTGCGCGTATTGAATTA+TGG | + | chr4_4:80457727-80457746 | Msa0707230:intron | 40.0% | |
| CAAGGTTGTGTCAGCATAAA+AGG | + | chr4_4:80457866-80457885 | Msa0707230:exon | 40.0% | |
| ! | CAAAAAGCAGTTGGTGTGTG+TGG | - | chr4_4:80455217-80455236 | None:intergenic | 45.0% |
| GGGGAGAACAATAACAGTGA+TGG | + | chr4_4:80455734-80455753 | Msa0707230:CDS | 45.0% | |
| CCACCAATGGTTTCATTCCT+AGG | - | chr4_4:80455830-80455849 | None:intergenic | 45.0% | |
| CCTAGGAATGAAACCATTGG+TGG | + | chr4_4:80455827-80455846 | Msa0707230:CDS | 45.0% | |
| !!! | CCTTTTGAGATTCTCAGCCA+TGG | - | chr4_4:80455879-80455898 | None:intergenic | 45.0% |
| CCATGGCTGAGAATCTCAAA+AGG | + | chr4_4:80455876-80455895 | Msa0707230:CDS | 45.0% | |
| TGTCTTAAATGGGCCCTCAA+GGG | - | chr4_4:80456286-80456305 | None:intergenic | 45.0% | |
| TTGGCCCCCTCAACAAAATT+TGG | + | chr4_4:80456655-80456674 | Msa0707230:intron | 45.0% | |
| CCTAACTGAATCCCTGTATC+TGG | - | chr4_4:80457029-80457048 | None:intergenic | 45.0% | |
| CCAGATACAGGGATTCAGTT+AGG | + | chr4_4:80457026-80457045 | Msa0707230:CDS | 45.0% | |
| TAAAGAAAAAGGGGCAACCC+AGG | - | chr4_4:80457061-80457080 | None:intergenic | 45.0% | |
| TATACCACTCACCAACTCCA+TGG | + | chr4_4:80457085-80457104 | Msa0707230:CDS | 45.0% | |
| CCTCAAAAACTCCATGGAGT+TGG | - | chr4_4:80457099-80457118 | None:intergenic | 45.0% | |
| ! | CCAACTCCATGGAGTTTTTG+AGG | + | chr4_4:80457096-80457115 | Msa0707230:CDS | 45.0% |
| TGTTACGTCGTAACATGTGG+TGG | + | chr4_4:80457290-80457309 | Msa0707230:intron | 45.0% | |
| GTTACGTCGTAACATGTGGT+GGG | + | chr4_4:80457291-80457310 | Msa0707230:intron | 45.0% | |
| TTACGTCGTAACATGTGGTG+GGG | + | chr4_4:80457292-80457311 | Msa0707230:intron | 45.0% | |
| GTGGGGTCGTTTGTTTGTTT+AGG | + | chr4_4:80457309-80457328 | Msa0707230:intron | 45.0% | |
| !! | GTTTAGGCTGCAAGTTTTGG+TGG | + | chr4_4:80457325-80457344 | Msa0707230:intron | 45.0% |
| GCACCATACTAAAGCCGTAA+AGG | - | chr4_4:80457436-80457455 | None:intergenic | 45.0% | |
| ! | GTATTGATGCAGCAGCCAAT+GGG | - | chr4_4:80457507-80457526 | None:intergenic | 45.0% |
| ! | TGTATTGATGCAGCAGCCAA+TGG | - | chr4_4:80457508-80457527 | None:intergenic | 45.0% |
| AACATGTGAGCCACTAGAAG+AGG | + | chr4_4:80457623-80457642 | Msa0707230:CDS | 45.0% | |
| CCATCATAGTGGTGAAGAAC+TGG | - | chr4_4:80457660-80457679 | None:intergenic | 45.0% | |
| CCAGTTCTTCACCACTATGA+TGG | + | chr4_4:80457657-80457676 | Msa0707230:CDS | 45.0% | |
| GGAACTTAGGTCCATCATAG+TGG | - | chr4_4:80457671-80457690 | None:intergenic | 45.0% | |
| TTCAGCTCAAGACGGAACTT+AGG | - | chr4_4:80457684-80457703 | None:intergenic | 45.0% | |
| TGCTTCCAACGACACTTTCA+AGG | + | chr4_4:80457848-80457867 | Msa0707230:CDS | 45.0% | |
| !! | CACAACCTTGAAAGTGTCGT+TGG | - | chr4_4:80457856-80457875 | None:intergenic | 45.0% |
| GCTGCCAATTTACGGTTGAA+TGG | + | chr4_4:80458186-80458205 | Msa0707230:three_prime_UTR | 45.0% | |
| !!! | AATAATATACATTTTTTAAT+TGG | - | chr4_4:80456186-80456205 | None:intergenic | 5.0% |
| !! | TTAAACAAAATTAAAAAAAT+GGG | - | chr4_4:80456400-80456419 | None:intergenic | 5.0% |
| !! | ATTAAACAAAATTAAAAAAA+TGG | - | chr4_4:80456401-80456420 | None:intergenic | 5.0% |
| !!! | TTTTATTTTTTCTATATATT+TGG | + | chr4_4:80456636-80456655 | Msa0707230:intron | 5.0% |
| !! | ATGAAATAATTAAAAAAAAA+GGG | - | chr4_4:80457757-80457776 | None:intergenic | 5.0% |
| !! | AATGAAATAATTAAAAAAAA+AGG | - | chr4_4:80457758-80457777 | None:intergenic | 5.0% |
| TTCCTAGGAAGAGACTCTGC+TGG | - | chr4_4:80455815-80455834 | None:intergenic | 50.0% | |
| GTCTTAAATGGGCCCTCAAG+GGG | - | chr4_4:80456285-80456304 | None:intergenic | 50.0% | |
| CTGTCTTAAATGGGCCCTCA+AGG | - | chr4_4:80456287-80456306 | None:intergenic | 50.0% | |
| !! | AGCATAGTCTTAGCTTGCGG+TGG | + | chr4_4:80456364-80456383 | Msa0707230:intron | 50.0% |
| ATAACATATACCCCCGGCAG+CGG | - | chr4_4:80456690-80456709 | None:intergenic | 50.0% | |
| TAGGTTTGCCTCCCAGATAC+AGG | + | chr4_4:80457014-80457033 | Msa0707230:intron | 50.0% | |
| AGGTTTGCCTCCCAGATACA+GGG | + | chr4_4:80457015-80457034 | Msa0707230:intron | 50.0% | |
| ACTGAATCCCTGTATCTGGG+AGG | - | chr4_4:80457025-80457044 | None:intergenic | 50.0% | |
| TCAGTTAGGGCCATTACTCC+TGG | + | chr4_4:80457040-80457059 | Msa0707230:CDS | 50.0% | |
| CAGTTAGGGCCATTACTCCT+GGG | + | chr4_4:80457041-80457060 | Msa0707230:CDS | 50.0% | |
| !! | AACTCCATGGAGTTGGTGAG+TGG | - | chr4_4:80457092-80457111 | None:intergenic | 50.0% |
| ! | TATTGATCCAACGGCTTGGG+AGG | + | chr4_4:80457354-80457373 | Msa0707230:CDS | 50.0% |
| CAGGCACATTCAGCTCAAGA+CGG | - | chr4_4:80457692-80457711 | None:intergenic | 50.0% | |
| TCTTGAGCTGAATGTGCCTG+AGG | + | chr4_4:80457692-80457711 | Msa0707230:CDS | 50.0% | |
| ! | GTTGTAGGCATTGTCTCTGC+TGG | + | chr4_4:80457806-80457825 | Msa0707230:intron | 50.0% |
| CTAGGAAGAGACTCTGCTGG+TGG | - | chr4_4:80455812-80455831 | None:intergenic | 55.0% | |
| CACCAGCAGAGTCTCTTCCT+AGG | + | chr4_4:80455810-80455829 | Msa0707230:CDS | 55.0% | |
| GGTATTCGGCCTAGATCCGA+CGG | + | chr4_4:80456249-80456268 | Msa0707230:intron | 55.0% | |
| TAAATGGGCCCTCAAGGGGT+GGG | - | chr4_4:80456281-80456300 | None:intergenic | 55.0% | |
| TTAAATGGGCCCTCAAGGGG+TGG | - | chr4_4:80456282-80456301 | None:intergenic | 55.0% | |
| AAGGGGCAACCCAGGAGTAA+TGG | - | chr4_4:80457053-80457072 | None:intergenic | 55.0% | |
| TTCTTGTCCTCCCAAGCCGT+TGG | - | chr4_4:80457364-80457383 | None:intergenic | 55.0% | |
| ! | TGGGAGGACAAGAAGTGTGC+TGG | + | chr4_4:80457370-80457389 | Msa0707230:CDS | 55.0% |
| CGAATCTCGTTTCCCTGCTC+AGG | + | chr4_4:80457393-80457412 | Msa0707230:CDS | 55.0% | |
| TTTAGACGGTCCCGTCCCAT+TGG | + | chr4_4:80457489-80457508 | Msa0707230:intron | 55.0% | |
| TGATGCAGCAGCCAATGGGA+CGG | - | chr4_4:80457503-80457522 | None:intergenic | 55.0% | |
| TCTCTTGTCAGCAGCCGCCT+TGG | - | chr4_4:80455777-80455796 | None:intergenic | 60.0% | |
| GGGATTGGACCGTCGGATCT+AGG | - | chr4_4:80456261-80456280 | None:intergenic | 60.0% | |
| AAGGGGTGGGATTGGACCGT+CGG | - | chr4_4:80456268-80456287 | None:intergenic | 60.0% | |
| GGTCCAATCCCACCCCTTGA+GGG | + | chr4_4:80456270-80456289 | Msa0707230:intron | 60.0% | |
| !! | GTCTTAGCTTGCGGTGGCCT+TGG | + | chr4_4:80456370-80456389 | Msa0707230:intron | 60.0% |
| !! | TTGGCTAGCTTTGCCGCTGC+CGG | + | chr4_4:80456674-80456693 | Msa0707230:intron | 60.0% |
| GATGCAGCAGCCAATGGGAC+GGG | - | chr4_4:80457502-80457521 | None:intergenic | 60.0% | |
| CGGTCCAATCCCACCCCTTG+AGG | + | chr4_4:80456269-80456288 | Msa0707230:intron | 65.0% | |
| !! | TGGCTAGCTTTGCCGCTGCC+GGG | + | chr4_4:80456675-80456694 | Msa0707230:intron | 65.0% |
| GGGCCCTCAAGGGGTGGGAT+TGG | - | chr4_4:80456276-80456295 | None:intergenic | 70.0% | |
| !! | GGCTAGCTTTGCCGCTGCCG+GGG | + | chr4_4:80456676-80456695 | Msa0707230:intron | 70.0% |
| !! | GCTAGCTTTGCCGCTGCCGG+GGG | + | chr4_4:80456677-80456696 | Msa0707230:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 80455158 | 80458292 | 80455158 | ID=Msa0707230;Name=Msa0707230 |
| chr4_4 | mRNA | 80455158 | 80458292 | 80455158 | ID=Msa0707230-mRNA-1;Parent=Msa0707230;Name=Msa0707230-mRNA-1;_AED=0.09;_eAED=0.09;_QI=156|1|1|1|1|1|5|408|320 |
| chr4_4 | exon | 80455158 | 80455908 | 80455158 | ID=Msa0707230-mRNA-1:exon:26113;Parent=Msa0707230-mRNA-1 |
| chr4_4 | exon | 80457017 | 80457117 | 80457017 | ID=Msa0707230-mRNA-1:exon:26114;Parent=Msa0707230-mRNA-1 |
| chr4_4 | exon | 80457331 | 80457414 | 80457331 | ID=Msa0707230-mRNA-1:exon:26115;Parent=Msa0707230-mRNA-1 |
| chr4_4 | exon | 80457603 | 80457713 | 80457603 | ID=Msa0707230-mRNA-1:exon:26116;Parent=Msa0707230-mRNA-1 |
| chr4_4 | exon | 80457813 | 80458292 | 80457813 | ID=Msa0707230-mRNA-1:exon:26117;Parent=Msa0707230-mRNA-1 |
| chr4_4 | five_prime_UTR | 80455158 | 80455313 | 80455158 | ID=Msa0707230-mRNA-1:five_prime_utr;Parent=Msa0707230-mRNA-1 |
| chr4_4 | CDS | 80455314 | 80455908 | 80455314 | ID=Msa0707230-mRNA-1:cds;Parent=Msa0707230-mRNA-1 |
| chr4_4 | CDS | 80457017 | 80457117 | 80457017 | ID=Msa0707230-mRNA-1:cds;Parent=Msa0707230-mRNA-1 |
| chr4_4 | CDS | 80457331 | 80457414 | 80457331 | ID=Msa0707230-mRNA-1:cds;Parent=Msa0707230-mRNA-1 |
| chr4_4 | CDS | 80457603 | 80457713 | 80457603 | ID=Msa0707230-mRNA-1:cds;Parent=Msa0707230-mRNA-1 |
| chr4_4 | CDS | 80457813 | 80457884 | 80457813 | ID=Msa0707230-mRNA-1:cds;Parent=Msa0707230-mRNA-1 |
| chr4_4 | three_prime_UTR | 80457885 | 80458292 | 80457885 | ID=Msa0707230-mRNA-1:three_prime_utr;Parent=Msa0707230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
