AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0710250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0710250 MtrunA17_Chr5g0412301 95.455 572 26 0 1 572 1 572 0.0 1143
Msa0710250 MtrunA17_Chr1g0210871 78.246 570 115 4 1 562 1 569 0.0 899
Msa0710250 MtrunA17_Chr7g0217951 50.000 454 200 6 1 448 1 433 1.87e-140 415
Msa0710250 MtrunA17_Chr5g0410781 51.364 220 102 2 234 448 27 246 1.59e-73 235
Msa0710250 MtrunA17_Chr3g0117631 30.769 325 173 8 233 549 23 303 1.53e-38 144
Msa0710250 MtrunA17_Chr4g0059061 31.104 299 160 8 266 559 46 303 3.19e-37 140
Msa0710250 MtrunA17_Chr8g0380321 28.136 295 160 6 270 553 26 279 2.07e-30 120
Msa0710250 MtrunA17_Chr2g0323961 55.556 72 32 0 90 161 1 72 1.53e-24 100
Msa0710250 MtrunA17_Chr7g0238751 40.625 96 52 2 235 325 28 123 1.80e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0710250 AT1G32230.3 41.667 564 294 13 17 560 21 569 5.63e-136 407
Msa0710250 AT1G32230.6 41.623 567 296 13 17 563 21 572 1.37e-135 407
Msa0710250 AT1G32230.4 41.623 567 296 13 17 563 21 572 1.37e-135 407
Msa0710250 AT1G32230.2 41.623 567 296 13 17 563 21 572 1.37e-135 407
Msa0710250 AT1G32230.5 41.623 567 296 13 17 563 21 572 1.37e-135 407
Msa0710250 AT1G32230.1 41.828 569 293 15 17 563 21 573 5.98e-135 405
Msa0710250 AT2G35510.1 39.619 578 320 11 1 560 1 567 4.29e-124 377
Msa0710250 AT2G35510.3 39.619 578 320 11 1 560 1 567 4.29e-124 377
Msa0710250 AT2G35510.2 40.959 459 252 8 1 448 1 451 2.40e-107 330
Msa0710250 AT1G70440.2 28.190 337 190 8 226 550 2 298 3.74e-38 143
Msa0710250 AT1G70440.1 28.190 337 190 8 226 550 2 298 3.74e-38 143
Msa0710250 AT1G23550.1 32.911 237 118 5 316 548 109 308 2.64e-36 138
Msa0710250 AT5G62520.1 29.249 253 131 5 301 549 89 297 3.79e-26 109
Msa0710250 AT3G47720.1 26.296 270 137 7 292 550 85 303 2.00e-22 98.6
Msa0710250 AT5G62520.2 32.877 146 89 3 301 442 89 229 1.05e-19 89.0

Find 186 sgRNAs with CRISPR-Local

Find 447 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTGATATTGACGAAAA+TGG 0.188994 5_1:+2247913 Msa0710250:CDS
TCAGAATCAGCATAAATTTC+AGG 0.192300 5_1:-2246837 None:intergenic
TGTTTGACAACTTCGTTTCT+TGG 0.207598 5_1:-2246492 None:intergenic
CATTTAGAAATTGAAATAAA+TGG 0.220833 5_1:+2246942 Msa0710250:CDS
ATATGCATTATCTGCAATTC+AGG 0.249387 5_1:+2249519 Msa0710250:CDS
AGAATTTCATATTGTTTAAT+CGG 0.272064 5_1:+2250288 Msa0710250:three_prime_UTR
GATCAGGATTATAGGTGTTT+TGG 0.273923 5_1:+2244425 Msa0710250:intron
AGCATGACATCAAGAATATT+TGG 0.282378 5_1:-2246219 None:intergenic
CCTCGCTTCCATCTAGGGTT+AGG 0.283026 5_1:+2243860 Msa0710250:five_prime_UTR
ATAGTTCAAACCTTAAAATT+AGG 0.283459 5_1:+2250108 Msa0710250:three_prime_UTR
ATTTAATATCATTAGGATCT+TGG 0.284189 5_1:-2246917 None:intergenic
CCACCGCCTCGCTTCCATCT+AGG 0.287838 5_1:+2243854 Msa0710250:five_prime_UTR
TTGAAACTAACAACATATTC+TGG 0.302685 5_1:-2248105 None:intergenic
TGATAGACCATCAAACGTTC+TGG 0.315101 5_1:-2246615 None:intergenic
TTCTCCACTATCCTGATTGC+AGG 0.320979 5_1:-2246877 None:intergenic
CAAGGTTTCTGCGAAGGATA+TGG 0.322660 5_1:+2249487 Msa0710250:CDS
CCGTGTAATAATGGGGAATA+TGG 0.323010 5_1:+2247957 Msa0710250:CDS
CACTTTGCGCCGTAGATTGT+TGG 0.333114 5_1:+2250191 Msa0710250:three_prime_UTR
ATGGAACCTTGTTAAGTATT+GGG 0.334730 5_1:+2249925 Msa0710250:exon
AGAAAAGTACCTTGCTTTGA+AGG 0.336075 5_1:-2249775 None:intergenic
TGTATATGGAAGGTTGGATT+TGG 0.339592 5_1:+2247139 Msa0710250:CDS
GTTGGTAGTGCAGTTGTATA+TGG 0.343580 5_1:+2247125 Msa0710250:CDS
AAATGTAATTTAATATCATT+AGG 0.344899 5_1:-2246924 None:intergenic
ACCATCTCGTGTGATCAAAA+TGG 0.346697 5_1:+2249906 Msa0710250:CDS
ATCCAAGATACTATATAGTA+TGG 0.349263 5_1:+2248055 Msa0710250:CDS
TGTACAGAAGATGTTTCTTA+AGG 0.349580 5_1:+2247166 Msa0710250:CDS
ATTGTGATATTGACGAAAAT+GGG 0.350719 5_1:+2247914 Msa0710250:CDS
CTGGTAATTACCAGGCAAAA+AGG 0.353126 5_1:+2249675 Msa0710250:intron
TTTAGAATTTCAGAGAAGTT+AGG 0.363963 5_1:-2243905 None:intergenic
TATCAGATGAATTTGAAATC+TGG 0.365305 5_1:+2246765 Msa0710250:CDS
TTCCATACTATATAGTATCT+TGG 0.367221 5_1:-2248057 None:intergenic
GGAGAAAAGAATGTACAATA+TGG 0.368567 5_1:+2244446 Msa0710250:five_prime_UTR
AGAATATGTTGTTAGTTTCA+AGG 0.376305 5_1:+2248107 Msa0710250:CDS
AATGGAACCTTGTTAAGTAT+TGG 0.376678 5_1:+2249924 Msa0710250:exon
GCTTGGCTTGCTTCTTCTAA+AGG 0.378498 5_1:+2247326 Msa0710250:CDS
CTTAAGGGAACTAGTAGTTT+TGG 0.380222 5_1:+2247182 Msa0710250:CDS
GTACAGAAGATGTTTCTTAA+GGG 0.381330 5_1:+2247167 Msa0710250:CDS
GTCTCGTCAATCCAAGCAAT+AGG 0.384507 5_1:-2246798 None:intergenic
ATTGATGAAGATTCTCAGAT+TGG 0.386046 5_1:-2243706 None:intergenic
CGTTTGATGGTCTATCAAAA+TGG 0.393202 5_1:+2246621 Msa0710250:CDS
ATCTTCATCAATAGGTTACT+TGG 0.395668 5_1:+2243717 Msa0710250:five_prime_UTR
GTTTGCAGCGCCCTATTGCT+TGG 0.403920 5_1:+2246787 Msa0710250:CDS
GCAGCAACCAAACAGAATTC+TGG 0.404525 5_1:-2246284 None:intergenic
GACTCATATTGGACGGTCAT+TGG 0.404817 5_1:+2246557 Msa0710250:CDS
GGAGTCGATGCTTCCAAGTT+GGG 0.405561 5_1:+2246963 Msa0710250:CDS
GACGCGCCTGAGTGAGAGAT+TGG 0.408085 5_1:-2243813 None:intergenic
CTCGCTTCCATCTAGGGTTA+GGG 0.413431 5_1:+2243861 Msa0710250:five_prime_UTR
AGAATGTTGTTGACTTGGTT+AGG 0.415750 5_1:+2246664 Msa0710250:CDS
CCAAGGACCAGAATTCTGTT+TGG 0.416022 5_1:+2246277 Msa0710250:five_prime_UTR
AGTAGCAATAACATGGGAAA+TGG 0.417478 5_1:+2247065 Msa0710250:CDS
TCCTGATTGCAGGGATCATA+AGG 0.421377 5_1:-2246867 None:intergenic
TTTGATCACACGAGATGGTT+GGG 0.422810 5_1:-2249902 None:intergenic
CGATGAACCCTAACCCTAGA+TGG 0.425114 5_1:-2243868 None:intergenic
GAATTTCATATTGTTTAATC+GGG 0.425880 5_1:+2250289 Msa0710250:three_prime_UTR
CACCGCCTCGCTTCCATCTA+GGG 0.431468 5_1:+2243855 Msa0710250:five_prime_UTR
GATGAACATGTGAATATTGT+TGG 0.434057 5_1:+2249990 Msa0710250:three_prime_UTR
TCTAAATGCACACATGGCTT+TGG 0.435149 5_1:+2247401 Msa0710250:CDS
TAGTCTTACTTCCTAAAAGA+AGG 0.436907 5_1:-2248496 None:intergenic
GCCTTATGATCCCTGCAATC+AGG 0.440028 5_1:+2246866 Msa0710250:CDS
ACGAAATCAGAGACTCATAT+TGG 0.440224 5_1:+2246546 Msa0710250:CDS
CCAAACAGAATTCTGGTCCT+TGG 0.441566 5_1:-2246277 None:intergenic
TGCGACCAGTGTTACCTCGC+TGG 0.442121 5_1:+2246454 Msa0710250:CDS
AGTGAGAGATTGGGTCTGGC+AGG 0.442429 5_1:-2243803 None:intergenic
TGTGAATATTGTTGGCTCTT+GGG 0.447043 5_1:+2249998 Msa0710250:three_prime_UTR
GAGAAGTTAGGTTTATGAAA+AGG 0.448516 5_1:-2243893 None:intergenic
ATCTGAGAATCTTCATCAAT+AGG 0.449918 5_1:+2243709 Msa0710250:five_prime_UTR
TCCTCAGAATGTTGTTGACT+TGG 0.450948 5_1:+2246659 Msa0710250:CDS
ACTATCATAGTCACCACTAC+TGG 0.457911 5_1:-2248013 None:intergenic
GCGTTTATGATAAAGCTGTT+TGG 0.457999 5_1:+2250130 Msa0710250:three_prime_UTR
TCAGGATAGTGGAGAAAGTC+AGG 0.458623 5_1:+2246884 Msa0710250:CDS
TGCAGTTGTATATGGAAGGT+TGG 0.460207 5_1:+2247133 Msa0710250:CDS
AGTAGTGGTGACTATGATAG+TGG 0.460572 5_1:+2248015 Msa0710250:CDS
ATGTGAATATTGTTGGCTCT+TGG 0.463278 5_1:+2249997 Msa0710250:three_prime_UTR
CAAACAGAATTCTGGTCCTT+GGG 0.470624 5_1:-2246276 None:intergenic
CTCTTGAGAGCTACAATAGT+TGG 0.472193 5_1:+2249752 Msa0710250:CDS
AGCACAGGAAAAGGCATTGA+AGG 0.473023 5_1:-2249446 None:intergenic
CAACGGAAAGGCATCGGATA+GGG 0.473840 5_1:+2246371 Msa0710250:CDS
CAATAGGTTACTTGGAAAAG+AGG 0.478509 5_1:+2243725 Msa0710250:five_prime_UTR
CAGAATCAGCATAAATTTCA+GGG 0.479346 5_1:-2246836 None:intergenic
AGTATGCTTAACTATAACAT+TGG 0.483021 5_1:-2247003 None:intergenic
TCTCGTCAATCCAAGCAATA+GGG 0.485939 5_1:-2246797 None:intergenic
CCTGAGTGAGAGATTGGGTC+TGG 0.488432 5_1:-2243807 None:intergenic
ATGCTAATGTTCGATATGCT+TGG 0.490597 5_1:+2247309 Msa0710250:CDS
AAGGTCTCTTCTGCTGCTGA+AGG 0.492093 5_1:+2248126 Msa0710250:CDS
ATTGCTTGGATTGACGAGAC+AGG 0.495738 5_1:+2246801 Msa0710250:CDS
TAGAAATTAAACCTGGCAAA+AGG 0.497397 5_1:-2247449 None:intergenic
GATAGACCATCAAACGTTCT+GGG 0.497415 5_1:-2246614 None:intergenic
ATCTCACGCGCCAAGTGGGT+GGG 0.500182 5_1:-2243676 None:intergenic
TGGACGCCCAGAACGTTTGA+TGG 0.500372 5_1:+2246608 Msa0710250:CDS
ATACCTCAGGGAATAGCATC+TGG 0.501440 5_1:+2249401 Msa0710250:intron
GAAGCGAGGCGGTGGAGAAA+AGG 0.501669 5_1:-2243846 None:intergenic
GCATCAATAAGCACAGGAAA+AGG 0.503405 5_1:-2249455 None:intergenic
TGGAGTCGATGCTTCCAAGT+TGG 0.503473 5_1:+2246962 Msa0710250:CDS
TATCTCACGCGCCAAGTGGG+TGG 0.504303 5_1:-2243677 None:intergenic
ACTATGATGAAGTGTGGGCT+TGG 0.505685 5_1:+2247359 Msa0710250:CDS
TAAGGTTTGAACTATTGTGC+TGG 0.505767 5_1:-2250100 None:intergenic
TACAGTGATGCAATCACGAT+TGG 0.505775 5_1:+2247241 Msa0710250:CDS
GATCCCTGCAATCAGGATAG+TGG 0.509927 5_1:+2246873 Msa0710250:CDS
AATATGGAGCTTCTCCGTCC+TGG 0.513713 5_1:+2247973 Msa0710250:CDS
AAAGGCATTGAAGGGGATGT+TGG 0.517939 5_1:-2249437 None:intergenic
CCTAGATGGAAGCGAGGCGG+TGG 0.523537 5_1:-2243854 None:intergenic
GCGACCAGTGTTACCTCGCT+GGG 0.532218 5_1:+2246455 Msa0710250:CDS
GAAAAGAATGTACAATATGG+AGG 0.532485 5_1:+2244449 Msa0710250:five_prime_UTR
GGCAAACAACGGAAAGGCAT+CGG 0.532519 5_1:+2246365 Msa0710250:CDS
CTATCATAGTCACCACTACT+GGG 0.534346 5_1:-2248012 None:intergenic
TCGTTATCTCACGCGCCAAG+TGG 0.536195 5_1:-2243681 None:intergenic
CTATCAAAATGGTGAATGGA+AGG 0.536490 5_1:+2246632 Msa0710250:CDS
CTATATAGTATCTTGGATTG+TGG 0.536691 5_1:-2248050 None:intergenic
AAGTTCAAATATAAAAGCTC+AGG 0.539447 5_1:-2246308 None:intergenic
CGTTATCTCACGCGCCAAGT+GGG 0.539641 5_1:-2243680 None:intergenic
TGCATCACTGTACTTGAGAA+GGG 0.539798 5_1:-2247230 None:intergenic
TATATGAATTATAAGAAGAG+TGG 0.542935 5_1:+2246588 Msa0710250:CDS
ATATGAGTCTCTGATTTCGT+CGG 0.544734 5_1:-2246543 None:intergenic
CAACATATTCTGGACAGATG+TGG 0.545442 5_1:-2248095 None:intergenic
ACTGGTCGCAGATCTCCGTT+TGG 0.546119 5_1:-2246441 None:intergenic
ACAACGGAAAGGCATCGGAT+AGG 0.546402 5_1:+2246370 Msa0710250:CDS
TGGTCTATCAAAATGGTGAA+TGG 0.549899 5_1:+2246628 Msa0710250:CDS
GTGAGAGATTGGGTCTGGCA+GGG 0.550447 5_1:-2243802 None:intergenic
AACATATTCTGGACAGATGT+GGG 0.551162 5_1:-2248094 None:intergenic
GGACGAAACTGTCTAGTGCC+AGG 0.552779 5_1:-2247991 None:intergenic
CCACATGCTACATGTCCAAA+CGG 0.553167 5_1:+2246426 Msa0710250:CDS
CAAGTGGGTGGGTTGACTCA+CGG 0.554862 5_1:-2243665 None:intergenic
AACATGGGAAATGGAAATGT+TGG 0.556039 5_1:+2247074 Msa0710250:CDS
TATCTACTATGATGAAGTGT+GGG 0.563052 5_1:+2247354 Msa0710250:CDS
TGGAGGGTAACTGCAGTGCT+TGG 0.563869 5_1:+2244466 Msa0710250:five_prime_UTR
GCACAGGAAAAGGCATTGAA+GGG 0.565819 5_1:-2249445 None:intergenic
CGTGAGTCAACCCACCCACT+TGG 0.566550 5_1:+2243666 Msa0710250:five_prime_UTR
ACGCGCCTGAGTGAGAGATT+GGG 0.567948 5_1:-2243812 None:intergenic
ATTAAACCTGGCAAAAGGAA+AGG 0.568389 5_1:-2247444 None:intergenic
AATAGTTGGCCTTCAAAGCA+AGG 0.570840 5_1:+2249766 Msa0710250:CDS
CTGAGAGCATCAATAAGCAC+AGG 0.571313 5_1:-2249461 None:intergenic
TATTGATGCTCTCAGAAACA+AGG 0.572331 5_1:+2249469 Msa0710250:CDS
TGAAGATAGTAGCAATAACA+TGG 0.572879 5_1:+2247058 Msa0710250:CDS
CAGAAACAAGGTTTCTGCGA+AGG 0.572993 5_1:+2249481 Msa0710250:CDS
GTAGTGCAGTTGTATATGGA+AGG 0.578361 5_1:+2247129 Msa0710250:CDS
ACCAAGTCAACAACATTCTG+AGG 0.581281 5_1:-2246660 None:intergenic
TTGCTTGGATTGACGAGACA+GGG 0.581940 5_1:+2246802 Msa0710250:CDS
GAGTCGATGCTTCCAAGTTG+GGG 0.583392 5_1:+2246964 Msa0710250:CDS
TTGCATCACTGTACTTGAGA+AGG 0.584101 5_1:-2247231 None:intergenic
AAGTGTGGGCTTGGTCATTG+TGG 0.585698 5_1:+2247368 Msa0710250:CDS
ATCCATGAATAAAATTCCCA+TGG 0.586318 5_1:+2243927 Msa0710250:five_prime_UTR
CCATATTCCCCATTATTACA+CGG 0.586757 5_1:-2247957 None:intergenic
TCTCCACTATCCTGATTGCA+GGG 0.589306 5_1:-2246876 None:intergenic
ATCACACGAGATGGTTGGGA+GGG 0.590498 5_1:-2249898 None:intergenic
AAACTGTGCTGGTGAGGGTG+AGG 0.591437 5_1:-2246242 None:intergenic
TCAAACAAACTGTGCTGGTG+AGG 0.594201 5_1:-2246248 None:intergenic
CCAGACCCAATCTCTCACTC+AGG 0.595104 5_1:+2243807 Msa0710250:five_prime_UTR
TGATCTTATCCGTCTTAATG+TGG 0.595394 5_1:+2249951 Msa0710250:three_prime_UTR
AAAAGAATGTACAATATGGA+GGG 0.598654 5_1:+2244450 Msa0710250:five_prime_UTR
AAGTTTCAAACAAACTGTGC+TGG 0.601374 5_1:-2246253 None:intergenic
TATGCATTATCTGCAATTCA+GGG 0.603277 5_1:+2249520 Msa0710250:CDS
GATGCCCAGCGAGGTAACAC+TGG 0.607233 5_1:-2246459 None:intergenic
AGACAGTTTCGTCCCAGTAG+TGG 0.612844 5_1:+2248000 Msa0710250:CDS
ATAGCATCTGGTTCGCGTAG+AGG 0.613583 5_1:+2249413 Msa0710250:CDS
CAGAGTGTTCCACATTAAGA+CGG 0.614713 5_1:-2249960 None:intergenic
GTAGTGGTGACTATGATAGT+GGG 0.614725 5_1:+2248016 Msa0710250:CDS
TCTACATCTAAATGCACACA+TGG 0.616416 5_1:+2247395 Msa0710250:CDS
CCGTTTGGACATGTAGCATG+TGG 0.622892 5_1:-2246426 None:intergenic
TCATCTCCCAATACTTAACA+AGG 0.623898 5_1:-2249931 None:intergenic
GGGTTGTGCTTAATCTGAAG+CGG 0.628518 5_1:+2246391 Msa0710250:CDS
GCTATCGAAGTAGCAAACAA+TGG 0.630365 5_1:-2250262 None:intergenic
GATCACACGAGATGGTTGGG+AGG 0.630443 5_1:-2249899 None:intergenic
AGTTTGTTTGAAACTTCCCA+AGG 0.632571 5_1:+2246260 Msa0710250:five_prime_UTR
GGTCAAAATTTGAGACCAAG+AGG 0.634301 5_1:+2243948 Msa0710250:five_prime_UTR
GAAACTGTCTAGTGCCAGGA+CGG 0.638018 5_1:-2247987 None:intergenic
TTGTGATATTGACGAAAATG+GGG 0.640860 5_1:+2247915 Msa0710250:CDS
GCATCACTGTACTTGAGAAG+GGG 0.643866 5_1:-2247229 None:intergenic
CTATCTACTATGATGAAGTG+TGG 0.646279 5_1:+2247353 Msa0710250:CDS
AATCAGAGACTCATATTGGA+CGG 0.648143 5_1:+2246550 Msa0710250:CDS
GAAGATAGTAGCAATAACAT+GGG 0.651958 5_1:+2247059 Msa0710250:CDS
CAAACAAACTGTGCTGGTGA+GGG 0.655112 5_1:-2246247 None:intergenic
CATGGAGGCAAACAACGGAA+AGG 0.657589 5_1:+2246359 Msa0710250:exon
CACAGGAAAAGGCATTGAAG+GGG 0.658134 5_1:-2249444 None:intergenic
ACTGTGGAGGTAGAGTTACA+TGG 0.660219 5_1:+2246711 Msa0710250:CDS
TGCGAAGAAAGCAACTGTGG+AGG 0.668909 5_1:+2246698 Msa0710250:CDS
AGTCGATGCTTCCAAGTTGG+GGG 0.670164 5_1:+2246965 Msa0710250:CDS
AACCCTAGATGGAAGCGAGG+CGG 0.670501 5_1:-2243857 None:intergenic
TAATGCGAAGAAAGCAACTG+TGG 0.675973 5_1:+2246695 Msa0710250:CDS
CCTAACCCTAGATGGAAGCG+AGG 0.679125 5_1:-2243860 None:intergenic
ACAGTGTGAACGAACACGCA+CGG 0.680983 5_1:+2243751 Msa0710250:five_prime_UTR
ATAAACATGGAGGCAAACAA+CGG 0.683583 5_1:+2246354 Msa0710250:exon
ATTGATCTAGTAGATAAACA+TGG 0.692401 5_1:+2246341 Msa0710250:exon
TGGTGACTATGATAGTGGGG+TGG 0.700703 5_1:+2248020 Msa0710250:CDS
TAGTGGTGACTATGATAGTG+GGG 0.714306 5_1:+2248017 Msa0710250:CDS
GATCTAGTAGATAAACATGG+AGG 0.729895 5_1:+2246344 Msa0710250:exon
GATACAAGTGATGCCCAGCG+AGG 0.747737 5_1:-2246468 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAAGTTTTAAATTTATAT+TGG + chr5_1:2245129-2245148 Msa0710250:intron 10.0%
!!! TAAATTTATATTGGAATTTT+TGG + chr5_1:2245138-2245157 Msa0710250:intron 10.0%
!! AAATGTAATTTAATATCATT+AGG - chr5_1:2246927-2246946 None:intergenic 10.0%
!! AACTTAATATATATGAAAAA+AGG - chr5_1:2248690-2248709 None:intergenic 10.0%
!!! TTATTTTGCTTATTCATTTT+TGG + chr5_1:2245225-2245244 Msa0710250:intron 15.0%
!! AATTAAAAAAATTGGGAATA+TGG - chr5_1:2246187-2246206 None:intergenic 15.0%
!! CATTTAGAAATTGAAATAAA+TGG + chr5_1:2246942-2246961 Msa0710250:CDS 15.0%
!!! TATATTTTTATTTTGCTCAA+CGG - chr5_1:2247105-2247124 None:intergenic 15.0%
!! TTTACACAAGTATTTATTTA+AGG + chr5_1:2247563-2247582 Msa0710250:intron 15.0%
!!! TTTTTATTATTCTGTTGTAA+TGG + chr5_1:2247850-2247869 Msa0710250:intron 15.0%
!!! AAGACTAAGAATAATATTTT+TGG + chr5_1:2248512-2248531 Msa0710250:CDS 15.0%
!!! AGACTAAGAATAATATTTTT+GGG + chr5_1:2248513-2248532 Msa0710250:CDS 15.0%
!!! GGAATTGATAATTTAATAAA+AGG + chr5_1:2248816-2248835 Msa0710250:intron 15.0%
!! AGGAAAAAAATTATTTAGAT+GGG + chr5_1:2248940-2248959 Msa0710250:intron 15.0%
!!! ATTTTAATAAAATTCTGAGA+AGG + chr5_1:2249124-2249143 Msa0710250:intron 15.0%
!! AGAATTTCATATTGTTTAAT+CGG + chr5_1:2250288-2250307 Msa0710250:three_prime_UTR 15.0%
!!! ATATGCTTTTAGTTAATTGT+GGG + chr5_1:2244507-2244526 Msa0710250:intron 20.0%
!! TATGTTAAGATCTATCTTAT+TGG + chr5_1:2244939-2244958 Msa0710250:intron 20.0%
!!! ATATTTTGTTTTTGCATTGT+CGG + chr5_1:2245404-2245423 Msa0710250:intron 20.0%
!! ATAAGGTCTATAAACTTTAA+AGG + chr5_1:2245467-2245486 Msa0710250:intron 20.0%
!! CTTTATTCTTATTAATCAGT+AGG - chr5_1:2245923-2245942 None:intergenic 20.0%
!! AATTAAATCTCTTATCTTCT+TGG + chr5_1:2246017-2246036 Msa0710250:intron 20.0%
!! CCTGGATAATTAAAAAAATT+GGG - chr5_1:2246194-2246213 None:intergenic 20.0%
!!! CCAATTTTTTTAATTATCCA+GGG + chr5_1:2246192-2246211 Msa0710250:intron 20.0%
!! TATATGAATTATAAGAAGAG+TGG + chr5_1:2246588-2246607 Msa0710250:CDS 20.0%
!! ATTTAATATCATTAGGATCT+TGG - chr5_1:2246920-2246939 None:intergenic 20.0%
!! GAGCAAAATAAAAATATAGT+TGG + chr5_1:2247107-2247126 Msa0710250:CDS 20.0%
!!! AATTCAATAGTTTTTTCCTT+TGG + chr5_1:2247538-2247557 Msa0710250:intron 20.0%
!!! AGTATTATAGAACATTTTCA+AGG - chr5_1:2247671-2247690 None:intergenic 20.0%
!! AGACATTGATGTATAAATAT+GGG - chr5_1:2247781-2247800 None:intergenic 20.0%
!! AAGACATTGATGTATAAATA+TGG - chr5_1:2247782-2247801 None:intergenic 20.0%
!! AGAAGACATAAAAGAAATAA+AGG - chr5_1:2248164-2248183 None:intergenic 20.0%
!!! AAAGGATCTTATTTTTTGTT+AGG - chr5_1:2248202-2248221 None:intergenic 20.0%
!! TATTATAAACGAAAATGGAA+AGG - chr5_1:2248220-2248239 None:intergenic 20.0%
!!! TCCATTTTCGTTTATAATAT+TGG + chr5_1:2248221-2248240 Msa0710250:intron 20.0%
!! ACCAATATTATAAACGAAAA+TGG - chr5_1:2248225-2248244 None:intergenic 20.0%
!!! TAACTTGTTGATATATGATT+CGG + chr5_1:2248267-2248286 Msa0710250:intron 20.0%
!!! GATATATAATGCATTTTTAC+AGG + chr5_1:2248473-2248492 Msa0710250:intron 20.0%
!!! GACTAAGAATAATATTTTTG+GGG + chr5_1:2248514-2248533 Msa0710250:CDS 20.0%
!! TATATATGAAAAAAGGAAAG+TGG - chr5_1:2248683-2248702 None:intergenic 20.0%
!! ATATAAAAGATGAAACACAT+TGG - chr5_1:2248756-2248775 None:intergenic 20.0%
!! GAGGAAAAAAATTATTTAGA+TGG + chr5_1:2248939-2248958 Msa0710250:intron 20.0%
!!! TATAAATTGTCATTGTTTTC+TGG + chr5_1:2249656-2249675 Msa0710250:intron 20.0%
!! ATAGTTCAAACCTTAAAATT+AGG + chr5_1:2250108-2250127 Msa0710250:three_prime_UTR 20.0%
!! GAATTTCATATTGTTTAATC+GGG + chr5_1:2250289-2250308 Msa0710250:three_prime_UTR 20.0%
!! TTTAGAATTTCAGAGAAGTT+AGG - chr5_1:2243908-2243927 None:intergenic 25.0%
! AATTCAATTCAATTACCTCT+TGG - chr5_1:2243966-2243985 None:intergenic 25.0%
!!! CATGATTTTCAGTTTTGATT+TGG + chr5_1:2243992-2244011 Msa0710250:intron 25.0%
!! TTTAAGCTTAATTTTGTTGC+TGG + chr5_1:2244195-2244214 Msa0710250:intron 25.0%
!!! ATCTTTTTGATTTTGTGATC+AGG + chr5_1:2244409-2244428 Msa0710250:intron 25.0%
! AAAAGAATGTACAATATGGA+GGG + chr5_1:2244450-2244469 Msa0710250:five_prime_UTR 25.0%
!!! GATATGCTTTTAGTTAATTG+TGG + chr5_1:2244506-2244525 Msa0710250:intron 25.0%
!!! ATCTCTTGTTGTTTTTAGTT+TGG + chr5_1:2244556-2244575 Msa0710250:intron 25.0%
!! CTTTTATGAAAGTCAACAAA+CGG - chr5_1:2244805-2244824 None:intergenic 25.0%
!! TACTGCTGTATTTACATTTT+TGG + chr5_1:2245287-2245306 Msa0710250:intron 25.0%
! TCTAGAAATTAAACATCTGA+TGG - chr5_1:2245358-2245377 None:intergenic 25.0%
!! TCAGATGTTTAATTTCTAGA+AGG + chr5_1:2245358-2245377 Msa0710250:intron 25.0%
!! CAGATGTTTAATTTCTAGAA+GGG + chr5_1:2245359-2245378 Msa0710250:intron 25.0%
! AGTTTATAGACCTTATGATA+AGG - chr5_1:2245463-2245482 None:intergenic 25.0%
!!! TAAACTTTAAAGGCTTTGTT+TGG + chr5_1:2245477-2245496 Msa0710250:intron 25.0%
! GATGCTATACTATTAATCTA+TGG + chr5_1:2245975-2245994 Msa0710250:intron 25.0%
!!! CCCAATTTTTTTAATTATCC+AGG + chr5_1:2246191-2246210 Msa0710250:intron 25.0%
! CCCTGGATAATTAAAAAAAT+TGG - chr5_1:2246195-2246214 None:intergenic 25.0%
! AAGTTCAAATATAAAAGCTC+AGG - chr5_1:2246311-2246330 None:intergenic 25.0%
! ATTGATCTAGTAGATAAACA+TGG + chr5_1:2246341-2246360 Msa0710250:exon 25.0%
!! TATCAGATGAATTTGAAATC+TGG + chr5_1:2246765-2246784 Msa0710250:CDS 25.0%
! AGTATGCTTAACTATAACAT+TGG - chr5_1:2247006-2247025 None:intergenic 25.0%
! AAATTACGAAAAATTGTCGT+GGG + chr5_1:2247285-2247304 Msa0710250:CDS 25.0%
! TGATGATTAGAAATTAAACC+TGG - chr5_1:2247459-2247478 None:intergenic 25.0%
! AATACTTGTGTAAAAACCAA+AGG - chr5_1:2247557-2247576 None:intergenic 25.0%
! CACAAGTATTTATTTAAGGA+TGG + chr5_1:2247567-2247586 Msa0710250:intron 25.0%
! ACAATTGACAATAATAGAAG+TGG - chr5_1:2247635-2247654 None:intergenic 25.0%
! ATGTATAAATATGGGGAAAA+AGG - chr5_1:2247773-2247792 None:intergenic 25.0%
! GACATTGATGTATAAATATG+GGG - chr5_1:2247780-2247799 None:intergenic 25.0%
! ATTGTGATATTGACGAAAAT+GGG + chr5_1:2247914-2247933 Msa0710250:CDS 25.0%
! ATCCAAGATACTATATAGTA+TGG + chr5_1:2248055-2248074 Msa0710250:CDS 25.0%
! TTCCATACTATATAGTATCT+TGG - chr5_1:2248060-2248079 None:intergenic 25.0%
! TTGAAACTAACAACATATTC+TGG - chr5_1:2248108-2248127 None:intergenic 25.0%
!! AGAATATGTTGTTAGTTTCA+AGG + chr5_1:2248107-2248126 Msa0710250:CDS 25.0%
!!! TGCTTTTTACAAAGGAAATT+TGG - chr5_1:2248638-2248657 None:intergenic 25.0%
!!! AAATGCATTGCTTTTTACAA+AGG - chr5_1:2248646-2248665 None:intergenic 25.0%
! TTATCAATTCCTCTATATTC+TGG - chr5_1:2248807-2248826 None:intergenic 25.0%
! AAAAATTATTTAGATGGGAC+AGG + chr5_1:2248945-2248964 Msa0710250:intron 25.0%
!! TTTTACTATCTAAGCAATCT+AGG + chr5_1:2249198-2249217 Msa0710250:intron 25.0%
!! TCGAATCAATTTTTGAATTC+TGG + chr5_1:2249377-2249396 Msa0710250:intron 25.0%
!! CGAATCAATTTTTGAATTCT+GGG + chr5_1:2249378-2249397 Msa0710250:intron 25.0%
!! TATAAGTTGTCATTGTTTTC+TGG + chr5_1:2249602-2249621 Msa0710250:intron 25.0%
!! TTTAAACAATTAGGAGGTAT+AGG - chr5_1:2249862-2249881 None:intergenic 25.0%
! ATACCTCCTAATTGTTTAAA+CGG + chr5_1:2249862-2249881 Msa0710250:intron 25.0%
! AAGAAACCGTTTAAACAATT+AGG - chr5_1:2249871-2249890 None:intergenic 25.0%
!! ATCATAAACGCCTAATTTTA+AGG - chr5_1:2250121-2250140 None:intergenic 25.0%
!! TGGATATTCCATATTGTTTT+TGG + chr5_1:2250150-2250169 Msa0710250:three_prime_UTR 25.0%
!! TTTTTCTATCCAACAATCTA+CGG - chr5_1:2250203-2250222 None:intergenic 25.0%
ATTGATGAAGATTCTCAGAT+TGG - chr5_1:2243709-2243728 None:intergenic 30.0%
ATCTGAGAATCTTCATCAAT+AGG + chr5_1:2243709-2243728 Msa0710250:five_prime_UTR 30.0%
ATCTTCATCAATAGGTTACT+TGG + chr5_1:2243717-2243736 Msa0710250:five_prime_UTR 30.0%
GAGAAGTTAGGTTTATGAAA+AGG - chr5_1:2243896-2243915 None:intergenic 30.0%
ATCCATGAATAAAATTCCCA+TGG + chr5_1:2243927-2243946 Msa0710250:five_prime_UTR 30.0%
!! GTGTATGTTGTTGACTTTAT+CGG + chr5_1:2244089-2244108 Msa0710250:intron 30.0%
!! CATGCAAAGATTCATTTTTC+AGG - chr5_1:2244336-2244355 None:intergenic 30.0%
! GATTTTGTGATCAGGATTAT+AGG + chr5_1:2244417-2244436 Msa0710250:intron 30.0%
GGAGAAAAGAATGTACAATA+TGG + chr5_1:2244446-2244465 Msa0710250:five_prime_UTR 30.0%
GAAAAGAATGTACAATATGG+AGG + chr5_1:2244449-2244468 Msa0710250:five_prime_UTR 30.0%
ATTGTGGGAGTTCTTAATTT+CGG + chr5_1:2244522-2244541 Msa0710250:intron 30.0%
! GGTTGTTATGTTTTACTCTT+TGG + chr5_1:2244577-2244596 Msa0710250:intron 30.0%
GTATCCACAATCCATAAAAA+GGG - chr5_1:2244654-2244673 None:intergenic 30.0%
AGTATCCACAATCCATAAAA+AGG - chr5_1:2244655-2244674 None:intergenic 30.0%
! GGATACTTCTATGATGTTTT+TGG + chr5_1:2244668-2244687 Msa0710250:intron 30.0%
! TATGGCTATTGGTTAAACTA+AGG + chr5_1:2244723-2244742 Msa0710250:intron 30.0%
ATGTAAGTAAATGTTGACCA+CGG + chr5_1:2245095-2245114 Msa0710250:intron 30.0%
AATCTGTCTACAAGATTGTT+AGG + chr5_1:2245199-2245218 Msa0710250:intron 30.0%
CTATCTACTATCCAATTACA+GGG - chr5_1:2245327-2245346 None:intergenic 30.0%
ACTATCTACTATCCAATTAC+AGG - chr5_1:2245328-2245347 None:intergenic 30.0%
AACCTAGAGCAATTTATTCA+GGG - chr5_1:2245797-2245816 None:intergenic 30.0%
! ATCAGTAGGAGTATATTGTA+AGG - chr5_1:2245909-2245928 None:intergenic 30.0%
GAATACTTTAATTAGTCGTC+TGG - chr5_1:2245955-2245974 None:intergenic 30.0%
! ATCTATGGACTAAGTATTCT+TGG + chr5_1:2245990-2246009 Msa0710250:intron 30.0%
!!! GTGTTTTTTAGAATTTCACC+TGG + chr5_1:2246045-2246064 Msa0710250:intron 30.0%
GGAATATGGAACTAATGAAT+AGG - chr5_1:2246173-2246192 None:intergenic 30.0%
AGCATGACATCAAGAATATT+TGG - chr5_1:2246222-2246241 None:intergenic 30.0%
AAAAATTCAGCACAAGATGA+TGG - chr5_1:2246737-2246756 None:intergenic 30.0%
CAGAATCAGCATAAATTTCA+GGG - chr5_1:2246839-2246858 None:intergenic 30.0%
TCAGAATCAGCATAAATTTC+AGG - chr5_1:2246840-2246859 None:intergenic 30.0%
TGAAGATAGTAGCAATAACA+TGG + chr5_1:2247058-2247077 Msa0710250:CDS 30.0%
GAAGATAGTAGCAATAACAT+GGG + chr5_1:2247059-2247078 Msa0710250:CDS 30.0%
TGTACAGAAGATGTTTCTTA+AGG + chr5_1:2247166-2247185 Msa0710250:CDS 30.0%
GTACAGAAGATGTTTCTTAA+GGG + chr5_1:2247167-2247186 Msa0710250:CDS 30.0%
GAAATTACGAAAAATTGTCG+TGG + chr5_1:2247284-2247303 Msa0710250:CDS 30.0%
AATTACGAAAAATTGTCGTG+GGG + chr5_1:2247286-2247305 Msa0710250:CDS 30.0%
TATCTACTATGATGAAGTGT+GGG + chr5_1:2247354-2247373 Msa0710250:CDS 30.0%
TAGAAATTAAACCTGGCAAA+AGG - chr5_1:2247452-2247471 None:intergenic 30.0%
TCTACTAATATATCTCTGCA+TGG + chr5_1:2247593-2247612 Msa0710250:intron 30.0%
! TTCTGTTGTAATGGAAAGAA+AGG + chr5_1:2247859-2247878 Msa0710250:intron 30.0%
! TCTGTTGTAATGGAAAGAAA+GGG + chr5_1:2247860-2247879 Msa0710250:intron 30.0%
CATTGTGATATTGACGAAAA+TGG + chr5_1:2247913-2247932 Msa0710250:CDS 30.0%
TTGTGATATTGACGAAAATG+GGG + chr5_1:2247915-2247934 Msa0710250:CDS 30.0%
CTATATAGTATCTTGGATTG+TGG - chr5_1:2248053-2248072 None:intergenic 30.0%
AAGTGATCTGTCAAATATGA+AGG - chr5_1:2248363-2248382 None:intergenic 30.0%
AAACAAGTTTCCAAAAGGAA+GGG - chr5_1:2248439-2248458 None:intergenic 30.0%
GAAAGAAACAAGTTTCCAAA+AGG - chr5_1:2248444-2248463 None:intergenic 30.0%
! ATTTTTACAGGCCTTCTTTT+AGG + chr5_1:2248485-2248504 Msa0710250:intron 30.0%
! TAGTCTTACTTCCTAAAAGA+AGG - chr5_1:2248499-2248518 None:intergenic 30.0%
TTACAAAGGAAATTTGGCAT+CGG - chr5_1:2248632-2248651 None:intergenic 30.0%
! CATTGGCTATCTTAATATCA+AGG - chr5_1:2248739-2248758 None:intergenic 30.0%
GGATAAATTCCAGAATATAG+AGG + chr5_1:2248795-2248814 Msa0710250:intron 30.0%
TAGATATGCAGGCATAATTA+GGG + chr5_1:2248911-2248930 Msa0710250:intron 30.0%
TATAGATTTCTGACTCATCA+TGG + chr5_1:2249153-2249172 Msa0710250:intron 30.0%
ATATGCATTATCTGCAATTC+AGG + chr5_1:2249519-2249538 Msa0710250:CDS 30.0%
TATGCATTATCTGCAATTCA+GGG + chr5_1:2249520-2249539 Msa0710250:CDS 30.0%
GATATCAATTAAGACAGAGA+CGG - chr5_1:2249577-2249596 None:intergenic 30.0%
!! ATTGTTTTCTGGTAATTACC+AGG + chr5_1:2249613-2249632 Msa0710250:intron 30.0%
!! ATTGTTTTCTGGTAATTACC+AGG + chr5_1:2249613-2249632 Msa0710250:intron 30.0%
!!! AAGGCTTTAACTTTTTTGCA+TGG + chr5_1:2249800-2249819 Msa0710250:intron 30.0%
!!! AGGCTTTAACTTTTTTGCAT+GGG + chr5_1:2249801-2249820 Msa0710250:intron 30.0%
AAACCGTTTAAACAATTAGG+AGG - chr5_1:2249868-2249887 None:intergenic 30.0%
AATGGAACCTTGTTAAGTAT+TGG + chr5_1:2249924-2249943 Msa0710250:exon 30.0%
ATGGAACCTTGTTAAGTATT+GGG + chr5_1:2249925-2249944 Msa0710250:exon 30.0%
GATGAACATGTGAATATTGT+TGG + chr5_1:2249990-2250009 Msa0710250:three_prime_UTR 30.0%
CTCAAGTACCAAAAACAATA+TGG - chr5_1:2250161-2250180 None:intergenic 30.0%
CAATAGGTTACTTGGAAAAG+AGG + chr5_1:2243725-2243744 Msa0710250:five_prime_UTR 35.0%
! GACCATGGGAATTTTATTCA+TGG - chr5_1:2243932-2243951 None:intergenic 35.0%
!! TGGTCTCAAATTTTGACCAT+GGG - chr5_1:2243946-2243965 None:intergenic 35.0%
!! TTGGTCTCAAATTTTGACCA+TGG - chr5_1:2243947-2243966 None:intergenic 35.0%
! GAGCTTGGAATTTTCTAGAT+CGG + chr5_1:2244115-2244134 Msa0710250:intron 35.0%
AATCAACAGATCAATAGAGG+AGG - chr5_1:2244247-2244266 None:intergenic 35.0%
! CCTCTATTGATCTGTTGATT+CGG + chr5_1:2244247-2244266 Msa0710250:intron 35.0%
! GATCAGGATTATAGGTGTTT+TGG + chr5_1:2244425-2244444 Msa0710250:intron 35.0%
! GTGCTTGGTATGCATAATTT+TGG + chr5_1:2244481-2244500 Msa0710250:intron 35.0%
! ATGCTATACTGCCCTTTTTA+TGG + chr5_1:2244640-2244659 Msa0710250:intron 35.0%
ATCCTCAAGACTGTCTTATA+TGG + chr5_1:2244705-2244724 Msa0710250:intron 35.0%
AGACTGTCTTATATGGCTAT+TGG + chr5_1:2244712-2244731 Msa0710250:intron 35.0%
! GCTATTGGTTAAACTAAGGA+TGG + chr5_1:2244727-2244746 Msa0710250:intron 35.0%
AATCGAATTGTCCCTGTAAT+TGG + chr5_1:2245313-2245332 Msa0710250:intron 35.0%
GTCACAAGCTACTATTCAAA+CGG - chr5_1:2245441-2245460 None:intergenic 35.0%
! TAGCTTGTGACCTTATCATA+AGG + chr5_1:2245450-2245469 Msa0710250:intron 35.0%
!! AAAGGCTTTGTTTGGAAGTT+AGG + chr5_1:2245485-2245504 Msa0710250:intron 35.0%
TGATCTCACAAAATACACGT+TGG - chr5_1:2245643-2245662 None:intergenic 35.0%
! TTTTGTGAGATCACTATGCA+AGG + chr5_1:2245650-2245669 Msa0710250:intron 35.0%
!! TTAACCTTTGGGCTTTGTTT+GGG - chr5_1:2245749-2245768 None:intergenic 35.0%
!! TTTAACCTTTGGGCTTTGTT+TGG - chr5_1:2245750-2245769 None:intergenic 35.0%
AACAAAGCCCAAAGGTTAAA+TGG + chr5_1:2245750-2245769 Msa0710250:intron 35.0%
ACAAAGCCCAAAGGTTAAAT+GGG + chr5_1:2245751-2245770 Msa0710250:intron 35.0%
AACCCTGAATAAATTGCTCT+AGG + chr5_1:2245792-2245811 Msa0710250:intron 35.0%
GAACCTAGAGCAATTTATTC+AGG - chr5_1:2245798-2245817 None:intergenic 35.0%
CACATGCTTTCTTAAGTTTC+AGG - chr5_1:2245879-2245898 None:intergenic 35.0%
ATCTCTTATCTTCTTGGAGA+TGG + chr5_1:2246023-2246042 Msa0710250:intron 35.0%
AAGTTTCAAACAAACTGTGC+TGG - chr5_1:2246256-2246275 None:intergenic 35.0%
! AGTTTGTTTGAAACTTCCCA+AGG + chr5_1:2246260-2246279 Msa0710250:five_prime_UTR 35.0%
GATCTAGTAGATAAACATGG+AGG + chr5_1:2246344-2246363 Msa0710250:exon 35.0%
ATAAACATGGAGGCAAACAA+CGG + chr5_1:2246354-2246373 Msa0710250:exon 35.0%
TGTTTGACAACTTCGTTTCT+TGG - chr5_1:2246495-2246514 None:intergenic 35.0%
ATATGAGTCTCTGATTTCGT+CGG - chr5_1:2246546-2246565 None:intergenic 35.0%
ACGAAATCAGAGACTCATAT+TGG + chr5_1:2246546-2246565 Msa0710250:CDS 35.0%
AATCAGAGACTCATATTGGA+CGG + chr5_1:2246550-2246569 Msa0710250:CDS 35.0%
! CGTTTGATGGTCTATCAAAA+TGG + chr5_1:2246621-2246640 Msa0710250:CDS 35.0%
TGGTCTATCAAAATGGTGAA+TGG + chr5_1:2246628-2246647 Msa0710250:CDS 35.0%
CTATCAAAATGGTGAATGGA+AGG + chr5_1:2246632-2246651 Msa0710250:CDS 35.0%
!! AGAATGTTGTTGACTTGGTT+AGG + chr5_1:2246664-2246683 Msa0710250:CDS 35.0%
AGTAGCAATAACATGGGAAA+TGG + chr5_1:2247065-2247084 Msa0710250:CDS 35.0%
AACATGGGAAATGGAAATGT+TGG + chr5_1:2247074-2247093 Msa0710250:CDS 35.0%
TGTATATGGAAGGTTGGATT+TGG + chr5_1:2247139-2247158 Msa0710250:CDS 35.0%
! CTTAAGGGAACTAGTAGTTT+TGG + chr5_1:2247182-2247201 Msa0710250:CDS 35.0%
ATGCTAATGTTCGATATGCT+TGG + chr5_1:2247309-2247328 Msa0710250:CDS 35.0%
CTATCTACTATGATGAAGTG+TGG + chr5_1:2247353-2247372 Msa0710250:CDS 35.0%
TCTACATCTAAATGCACACA+TGG + chr5_1:2247395-2247414 Msa0710250:CDS 35.0%
ATTAAACCTGGCAAAAGGAA+AGG - chr5_1:2247447-2247466 None:intergenic 35.0%
! GAAAGAAAGGGATTCAAGTT+TGG + chr5_1:2247872-2247891 Msa0710250:intron 35.0%
! TGTCTTTTGCCGTGTAATAA+TGG + chr5_1:2247948-2247967 Msa0710250:CDS 35.0%
! GTCTTTTGCCGTGTAATAAT+GGG + chr5_1:2247949-2247968 Msa0710250:CDS 35.0%
! TCTTTTGCCGTGTAATAATG+GGG + chr5_1:2247950-2247969 Msa0710250:CDS 35.0%
CCATATTCCCCATTATTACA+CGG - chr5_1:2247960-2247979 None:intergenic 35.0%
AACATATTCTGGACAGATGT+GGG - chr5_1:2248097-2248116 None:intergenic 35.0%
GTACTTGATGAGTTAATCAG+AGG + chr5_1:2248243-2248262 Msa0710250:intron 35.0%
!! ATGATTCGGTTCATTCCATT+TGG + chr5_1:2248281-2248300 Msa0710250:intron 35.0%
AAGGAGAAATCAACATGCTA+GGG - chr5_1:2248321-2248340 None:intergenic 35.0%
GAAACAAGTTTCCAAAAGGA+AGG - chr5_1:2248440-2248459 None:intergenic 35.0%
!!! GTGACAAGATTTTAGGACTT+CGG - chr5_1:2248553-2248572 None:intergenic 35.0%
! TCTGAACGTGACAAGATTTT+AGG - chr5_1:2248560-2248579 None:intergenic 35.0%
ATAAGTAGCAAGTCTTCAGA+AGG + chr5_1:2248774-2248793 Msa0710250:intron 35.0%
!! CAGATAAGTTCTAGATATGC+AGG + chr5_1:2248900-2248919 Msa0710250:intron 35.0%
CTAGATATGCAGGCATAATT+AGG + chr5_1:2248910-2248929 Msa0710250:intron 35.0%
! CTTTTATCAATGCAGTCACT+TGG - chr5_1:2248986-2249005 None:intergenic 35.0%
! CAAGTGACTGCATTGATAAA+AGG + chr5_1:2248984-2249003 Msa0710250:intron 35.0%
! GACTGCATTGATAAAAGGAA+TGG + chr5_1:2248989-2249008 Msa0710250:intron 35.0%
! TGCATTGATAAAAGGAATGG+TGG + chr5_1:2248992-2249011 Msa0710250:intron 35.0%
TAAGCAATCTAGGTTTCAGT+CGG + chr5_1:2249208-2249227 Msa0710250:intron 35.0%
TATTGATGCTCTCAGAAACA+AGG + chr5_1:2249469-2249488 Msa0710250:CDS 35.0%
!! TAGTGTAAAACTAGCTTTGC+TGG + chr5_1:2249547-2249566 Msa0710250:intron 35.0%
! ATGATTTTGCGAAGAAGTTG+AGG + chr5_1:2249708-2249727 Msa0710250:CDS 35.0%
!! AGAAAAGTACCTTGCTTTGA+AGG - chr5_1:2249778-2249797 None:intergenic 35.0%
!! AAGCAAGGTACTTTTCTCAA+AGG + chr5_1:2249781-2249800 Msa0710250:intron 35.0%
TGAATGGTTTATCTGCTACA+TGG + chr5_1:2249831-2249850 Msa0710250:intron 35.0%
TCATCTCCCAATACTTAACA+AGG - chr5_1:2249934-2249953 None:intergenic 35.0%
TGATCTTATCCGTCTTAATG+TGG + chr5_1:2249951-2249970 Msa0710250:three_prime_UTR 35.0%
!! ATGTGAATATTGTTGGCTCT+TGG + chr5_1:2249997-2250016 Msa0710250:three_prime_UTR 35.0%
!! TGTGAATATTGTTGGCTCTT+GGG + chr5_1:2249998-2250017 Msa0710250:three_prime_UTR 35.0%
TAAGGTTTGAACTATTGTGC+TGG - chr5_1:2250103-2250122 None:intergenic 35.0%
GCGTTTATGATAAAGCTGTT+TGG + chr5_1:2250130-2250149 Msa0710250:three_prime_UTR 35.0%
! GGTCAAAATTTGAGACCAAG+AGG + chr5_1:2243948-2243967 Msa0710250:five_prime_UTR 40.0%
!! TGACTTTATCGGTTTGAGCT+TGG + chr5_1:2244100-2244119 Msa0710250:intron 40.0%
CCGAATCAACAGATCAATAG+AGG - chr5_1:2244250-2244269 None:intergenic 40.0%
!! CTATTGATCTGTTGATTCGG+TGG + chr5_1:2244250-2244269 Msa0710250:intron 40.0%
!! TGTTGATTCGGTGGTAGATT+AGG + chr5_1:2244259-2244278 Msa0710250:intron 40.0%
!! GTTGATTCGGTGGTAGATTA+GGG + chr5_1:2244260-2244279 Msa0710250:intron 40.0%
!! ACTGCCCTTTTTATGGATTG+TGG + chr5_1:2244647-2244666 Msa0710250:intron 40.0%
AGCCATATAAGACAGTCTTG+AGG - chr5_1:2244710-2244729 None:intergenic 40.0%
! AGATCAAAGAGAGCGCAAAA+AGG - chr5_1:2244995-2245014 None:intergenic 40.0%
CTTGTTGCTATGTAATTCCG+TGG - chr5_1:2245115-2245134 None:intergenic 40.0%
!! GCTTTGTTTGGAAGTTAGGA+GGG + chr5_1:2245489-2245508 Msa0710250:intron 40.0%
!!! AAGAGTGTCCATCAACCTTT+TGG + chr5_1:2245525-2245544 Msa0710250:intron 40.0%
!! AGAGTGTCCATCAACCTTTT+GGG + chr5_1:2245526-2245545 Msa0710250:intron 40.0%
CTCACAAAATACACGTTGGA+AGG - chr5_1:2245639-2245658 None:intergenic 40.0%
CAAAGCCCAAAGGTTAAATG+GGG + chr5_1:2245752-2245771 Msa0710250:intron 40.0%
TTAAGTTTCAGGCACCATGT+CGG - chr5_1:2245868-2245887 None:intergenic 40.0%
! CAAGAATATTTGGAACTCCC+TGG - chr5_1:2246212-2246231 None:intergenic 40.0%
CAAACAGAATTCTGGTCCTT+GGG - chr5_1:2246279-2246298 None:intergenic 40.0%
GATAGACCATCAAACGTTCT+GGG - chr5_1:2246617-2246636 None:intergenic 40.0%
TGATAGACCATCAAACGTTC+TGG - chr5_1:2246618-2246637 None:intergenic 40.0%
! TCCTCAGAATGTTGTTGACT+TGG + chr5_1:2246659-2246678 Msa0710250:CDS 40.0%
ACCAAGTCAACAACATTCTG+AGG - chr5_1:2246663-2246682 None:intergenic 40.0%
TAATGCGAAGAAAGCAACTG+TGG + chr5_1:2246695-2246714 Msa0710250:CDS 40.0%
TCTCGTCAATCCAAGCAATA+GGG - chr5_1:2246800-2246819 None:intergenic 40.0%
!! GTTGGTAGTGCAGTTGTATA+TGG + chr5_1:2247125-2247144 Msa0710250:CDS 40.0%
GTAGTGCAGTTGTATATGGA+AGG + chr5_1:2247129-2247148 Msa0710250:CDS 40.0%
TGCAGTTGTATATGGAAGGT+TGG + chr5_1:2247133-2247152 Msa0710250:CDS 40.0%
TGCATCACTGTACTTGAGAA+GGG - chr5_1:2247233-2247252 None:intergenic 40.0%
TTGCATCACTGTACTTGAGA+AGG - chr5_1:2247234-2247253 None:intergenic 40.0%
TACAGTGATGCAATCACGAT+TGG + chr5_1:2247241-2247260 Msa0710250:CDS 40.0%
TCTAAATGCACACATGGCTT+TGG + chr5_1:2247401-2247420 Msa0710250:CDS 40.0%
! CCGTGTAATAATGGGGAATA+TGG + chr5_1:2247957-2247976 Msa0710250:CDS 40.0%
CTATCATAGTCACCACTACT+GGG - chr5_1:2248015-2248034 None:intergenic 40.0%
ACTATCATAGTCACCACTAC+TGG - chr5_1:2248016-2248035 None:intergenic 40.0%
AGTAGTGGTGACTATGATAG+TGG + chr5_1:2248015-2248034 Msa0710250:CDS 40.0%
GTAGTGGTGACTATGATAGT+GGG + chr5_1:2248016-2248035 Msa0710250:CDS 40.0%
! TAGTGGTGACTATGATAGTG+GGG + chr5_1:2248017-2248036 Msa0710250:CDS 40.0%
CAACATATTCTGGACAGATG+TGG - chr5_1:2248098-2248117 None:intergenic 40.0%
TTCGGTTCATTCCATTTGGA+TGG + chr5_1:2248285-2248304 Msa0710250:intron 40.0%
GTTCATTCCATTTGGATGGA+GGG + chr5_1:2248289-2248308 Msa0710250:intron 40.0%
GAAGGAGAAATCAACATGCT+AGG - chr5_1:2248322-2248341 None:intergenic 40.0%
!! AGCATGTTGATTTCTCCTTC+TGG + chr5_1:2248322-2248341 Msa0710250:intron 40.0%
!! TGTTGATTTCTCCTTCTGGT+TGG + chr5_1:2248326-2248345 Msa0710250:intron 40.0%
! GTTGATTTCTCCTTCTGGTT+GGG + chr5_1:2248327-2248346 Msa0710250:intron 40.0%
TTGACAGATCACTTCATGTC+TGG + chr5_1:2248369-2248388 Msa0710250:intron 40.0%
! TGCAGGCATAATTAGGGTTT+TGG + chr5_1:2248917-2248936 Msa0710250:intron 40.0%
!! AGGCATAATTAGGGTTTTGG+AGG + chr5_1:2248920-2248939 Msa0710250:intron 40.0%
!!! CTGACTCATCATGGTTTTGA+AGG + chr5_1:2249162-2249181 Msa0710250:intron 40.0%
!! TTTGAATTCTGGGATACCTC+AGG + chr5_1:2249388-2249407 Msa0710250:intron 40.0%
!! TTGAATTCTGGGATACCTCA+GGG + chr5_1:2249389-2249408 Msa0710250:intron 40.0%
GCATCAATAAGCACAGGAAA+AGG - chr5_1:2249458-2249477 None:intergenic 40.0%
CTGGTAATTACCAGGCAAAA+AGG + chr5_1:2249621-2249640 Msa0710250:intron 40.0%
CTGGTAATTACCAGGCAAAA+AGG + chr5_1:2249621-2249640 Msa0710250:intron 40.0%
CTCTTGAGAGCTACAATAGT+TGG + chr5_1:2249752-2249771 Msa0710250:CDS 40.0%
!! AATAGTTGGCCTTCAAAGCA+AGG + chr5_1:2249766-2249785 Msa0710250:CDS 40.0%
GTAGCAGATAAACCATTCAC+TGG - chr5_1:2249830-2249849 None:intergenic 40.0%
TTTGATCACACGAGATGGTT+GGG - chr5_1:2249905-2249924 None:intergenic 40.0%
! TTTTGATCACACGAGATGGT+TGG - chr5_1:2249906-2249925 None:intergenic 40.0%
ACCATCTCGTGTGATCAAAA+TGG + chr5_1:2249906-2249925 Msa0710250:CDS 40.0%
!! TCCATTTTGATCACACGAGA+TGG - chr5_1:2249910-2249929 None:intergenic 40.0%
! CAGAGTGTTCCACATTAAGA+CGG - chr5_1:2249963-2249982 None:intergenic 40.0%
GCTATCGAAGTAGCAAACAA+TGG - chr5_1:2250265-2250284 None:intergenic 40.0%
TTCGGTGGTAGATTAGGGAT+TGG + chr5_1:2244265-2244284 Msa0710250:intron 45.0%
!! GGCTTTGTTTGGAAGTTAGG+AGG + chr5_1:2245488-2245507 Msa0710250:intron 45.0%
! GAGTGTCCATCAACCTTTTG+GGG + chr5_1:2245527-2245546 Msa0710250:intron 45.0%
! AGTGTCCATCAACCTTTTGG+GGG + chr5_1:2245528-2245547 Msa0710250:intron 45.0%
AAACACCCCCAAAAGGTTGA+TGG - chr5_1:2245536-2245555 None:intergenic 45.0%
!!! CAACCTTTTGGGGGTGTTTT+TGG + chr5_1:2245537-2245556 Msa0710250:intron 45.0%
!!! CTTTTGGGGGTGTTTTTGGA+GGG + chr5_1:2245541-2245560 Msa0710250:intron 45.0%
!!! TTTTGGGGGTGTTTTTGGAG+GGG + chr5_1:2245542-2245561 Msa0710250:intron 45.0%
TGTGAGATCACTATGCAAGG+TGG + chr5_1:2245653-2245672 Msa0710250:intron 45.0%
GTGAGATCACTATGCAAGGT+GGG + chr5_1:2245654-2245673 Msa0710250:intron 45.0%
GGAAGGGATTTGAGGAGAAA+GGG - chr5_1:2245707-2245726 None:intergenic 45.0%
AAATGGAGGGAAGGGATTTG+AGG - chr5_1:2245715-2245734 None:intergenic 45.0%
!! TTTGGGAGTTGGTGGAGAAA+TGG - chr5_1:2245732-2245751 None:intergenic 45.0%
!! TTTGGGCTTTGTTTGGGAGT+TGG - chr5_1:2245743-2245762 None:intergenic 45.0%
AACTCCCAAACAAAGCCCAA+AGG + chr5_1:2245742-2245761 Msa0710250:intron 45.0%
AGCCACCCCATTTAACCTTT+GGG - chr5_1:2245760-2245779 None:intergenic 45.0%
! ACCTTTTATAGCAGCCGACA+TGG + chr5_1:2245851-2245870 Msa0710250:intron 45.0%
! ACCATGTCGGCTGCTATAAA+AGG - chr5_1:2245855-2245874 None:intergenic 45.0%
! TCTAAAGCACTTCAGCTTCC+AGG - chr5_1:2246066-2246085 None:intergenic 45.0%
! CAAACAAACTGTGCTGGTGA+GGG - chr5_1:2246250-2246269 None:intergenic 45.0%
! TCAAACAAACTGTGCTGGTG+AGG - chr5_1:2246251-2246270 None:intergenic 45.0%
CCAAACAGAATTCTGGTCCT+TGG - chr5_1:2246280-2246299 None:intergenic 45.0%
CCAAGGACCAGAATTCTGTT+TGG + chr5_1:2246277-2246296 Msa0710250:five_prime_UTR 45.0%
GCAGCAACCAAACAGAATTC+TGG - chr5_1:2246287-2246306 None:intergenic 45.0%
GGGTTGTGCTTAATCTGAAG+CGG + chr5_1:2246391-2246410 Msa0710250:CDS 45.0%
CCACATGCTACATGTCCAAA+CGG + chr5_1:2246426-2246445 Msa0710250:CDS 45.0%
GACTCATATTGGACGGTCAT+TGG + chr5_1:2246557-2246576 Msa0710250:CDS 45.0%
ACTGTGGAGGTAGAGTTACA+TGG + chr5_1:2246711-2246730 Msa0710250:CDS 45.0%
GTCTCGTCAATCCAAGCAAT+AGG - chr5_1:2246801-2246820 None:intergenic 45.0%
ATTGCTTGGATTGACGAGAC+AGG + chr5_1:2246801-2246820 Msa0710250:CDS 45.0%
TTGCTTGGATTGACGAGACA+GGG + chr5_1:2246802-2246821 Msa0710250:CDS 45.0%
TCCTGATTGCAGGGATCATA+AGG - chr5_1:2246870-2246889 None:intergenic 45.0%
TCTCCACTATCCTGATTGCA+GGG - chr5_1:2246879-2246898 None:intergenic 45.0%
TTCTCCACTATCCTGATTGC+AGG - chr5_1:2246880-2246899 None:intergenic 45.0%
!! TCAGGATAGTGGAGAAAGTC+AGG + chr5_1:2246884-2246903 Msa0710250:CDS 45.0%
GCATCACTGTACTTGAGAAG+GGG - chr5_1:2247232-2247251 None:intergenic 45.0%
!! GCTTGGCTTGCTTCTTCTAA+AGG + chr5_1:2247326-2247345 Msa0710250:CDS 45.0%
ACTATGATGAAGTGTGGGCT+TGG + chr5_1:2247359-2247378 Msa0710250:CDS 45.0%
GGTTCATTCCATTTGGATGG+AGG + chr5_1:2248288-2248307 Msa0710250:intron 45.0%
GATGAAACCCTCCATCCAAA+TGG - chr5_1:2248299-2248318 None:intergenic 45.0%
! CAAAGGAAATTTGGCATCGG+AGG - chr5_1:2248629-2248648 None:intergenic 45.0%
ATACCTCAGGGAATAGCATC+TGG + chr5_1:2249401-2249420 Msa0710250:intron 45.0%
!! AAAGGCATTGAAGGGGATGT+TGG - chr5_1:2249440-2249459 None:intergenic 45.0%
!! CACAGGAAAAGGCATTGAAG+GGG - chr5_1:2249447-2249466 None:intergenic 45.0%
!! GCACAGGAAAAGGCATTGAA+GGG - chr5_1:2249448-2249467 None:intergenic 45.0%
!! AGCACAGGAAAAGGCATTGA+AGG - chr5_1:2249449-2249468 None:intergenic 45.0%
!! CTGAGAGCATCAATAAGCAC+AGG - chr5_1:2249464-2249483 None:intergenic 45.0%
CAGAAACAAGGTTTCTGCGA+AGG + chr5_1:2249481-2249500 Msa0710250:CDS 45.0%
CAAGGTTTCTGCGAAGGATA+TGG + chr5_1:2249487-2249506 Msa0710250:CDS 45.0%
!! TTAAATTATAATATAGATTA+GGG - chr5_1:2244309-2244328 None:intergenic 5.0%
!! ATTAAATTATAATATAGATT+AGG - chr5_1:2244310-2244329 None:intergenic 5.0%
ACAGTGTGAACGAACACGCA+CGG + chr5_1:2243751-2243770 Msa0710250:five_prime_UTR 50.0%
!! GGTTTTTAAGGGTGGCGGTT+TGG - chr5_1:2243784-2243803 None:intergenic 50.0%
!! TCTGGCAGGGTTTTTAAGGG+TGG - chr5_1:2243792-2243811 None:intergenic 50.0%
! GGGTCTGGCAGGGTTTTTAA+GGG - chr5_1:2243795-2243814 None:intergenic 50.0%
! TGGGTCTGGCAGGGTTTTTA+AGG - chr5_1:2243796-2243815 None:intergenic 50.0%
! CTCGCTTCCATCTAGGGTTA+GGG + chr5_1:2243861-2243880 Msa0710250:five_prime_UTR 50.0%
CGATGAACCCTAACCCTAGA+TGG - chr5_1:2243871-2243890 None:intergenic 50.0%
GTTTGGAAGTTAGGAGGGAC+AGG + chr5_1:2245494-2245513 Msa0710250:intron 50.0%
GAAGTTAGGAGGGACAGGTA+GGG + chr5_1:2245499-2245518 Msa0710250:intron 50.0%
CCTCCAAAAACACCCCCAAA+AGG - chr5_1:2245543-2245562 None:intergenic 50.0%
!!! CCTTTTGGGGGTGTTTTTGG+AGG + chr5_1:2245540-2245559 Msa0710250:intron 50.0%
AAAGGGATGAGCAAGGGGAA+GGG - chr5_1:2245690-2245709 None:intergenic 50.0%
AGGAGAAAGGGATGAGCAAG+GGG - chr5_1:2245695-2245714 None:intergenic 50.0%
GAGGAGAAAGGGATGAGCAA+GGG - chr5_1:2245696-2245715 None:intergenic 50.0%
TGAGGAGAAAGGGATGAGCA+AGG - chr5_1:2245697-2245716 None:intergenic 50.0%
GGGAAGGGATTTGAGGAGAA+AGG - chr5_1:2245708-2245727 None:intergenic 50.0%
TGGTGGAGAAATGGAGGGAA+GGG - chr5_1:2245723-2245742 None:intergenic 50.0%
TTGGTGGAGAAATGGAGGGA+AGG - chr5_1:2245724-2245743 None:intergenic 50.0%
!! GGAGTTGGTGGAGAAATGGA+GGG - chr5_1:2245728-2245747 None:intergenic 50.0%
AGCCCAAAGGTTAAATGGGG+TGG + chr5_1:2245755-2245774 Msa0710250:intron 50.0%
CAGCCACCCCATTTAACCTT+TGG - chr5_1:2245761-2245780 None:intergenic 50.0%
CATGGAGGCAAACAACGGAA+AGG + chr5_1:2246359-2246378 Msa0710250:exon 50.0%
! GGCAAACAACGGAAAGGCAT+CGG + chr5_1:2246365-2246384 Msa0710250:CDS 50.0%
!! ACAACGGAAAGGCATCGGAT+AGG + chr5_1:2246370-2246389 Msa0710250:CDS 50.0%
!! CAACGGAAAGGCATCGGATA+GGG + chr5_1:2246371-2246390 Msa0710250:CDS 50.0%
CCGTTTGGACATGTAGCATG+TGG - chr5_1:2246429-2246448 None:intergenic 50.0%
TGCGAAGAAAGCAACTGTGG+AGG + chr5_1:2246698-2246717 Msa0710250:CDS 50.0%
GCCTTATGATCCCTGCAATC+AGG + chr5_1:2246866-2246885 Msa0710250:CDS 50.0%
GATCCCTGCAATCAGGATAG+TGG + chr5_1:2246873-2246892 Msa0710250:CDS 50.0%
TGGAGTCGATGCTTCCAAGT+TGG + chr5_1:2246962-2246981 Msa0710250:CDS 50.0%
GGAGTCGATGCTTCCAAGTT+GGG + chr5_1:2246963-2246982 Msa0710250:CDS 50.0%
GAGTCGATGCTTCCAAGTTG+GGG + chr5_1:2246964-2246983 Msa0710250:CDS 50.0%
! AGTCGATGCTTCCAAGTTGG+GGG + chr5_1:2246965-2246984 Msa0710250:CDS 50.0%
! AAGTGTGGGCTTGGTCATTG+TGG + chr5_1:2247368-2247387 Msa0710250:CDS 50.0%
! CTGCTACCTTTCCTTTTGCC+AGG + chr5_1:2247438-2247457 Msa0710250:CDS 50.0%
AATATGGAGCTTCTCCGTCC+TGG + chr5_1:2247973-2247992 Msa0710250:CDS 50.0%
GAAACTGTCTAGTGCCAGGA+CGG - chr5_1:2247990-2248009 None:intergenic 50.0%
AGACAGTTTCGTCCCAGTAG+TGG + chr5_1:2248000-2248019 Msa0710250:CDS 50.0%
!! TGGTGACTATGATAGTGGGG+TGG + chr5_1:2248020-2248039 Msa0710250:CDS 50.0%
AAGGTCTCTTCTGCTGCTGA+AGG + chr5_1:2248126-2248145 Msa0710250:CDS 50.0%
! TGTACGAGTGCCCTTCCTTT+TGG + chr5_1:2248426-2248445 Msa0710250:intron 50.0%
GAACCAGATGCTATTCCCTG+AGG - chr5_1:2249407-2249426 None:intergenic 50.0%
! ATAGCATCTGGTTCGCGTAG+AGG + chr5_1:2249413-2249432 Msa0710250:CDS 50.0%
! AGCGAGTCATCCTTTTTGCC+TGG - chr5_1:2249634-2249653 None:intergenic 50.0%
! CACGAGTCATCCTTTTTGCC+TGG - chr5_1:2249688-2249707 None:intergenic 50.0%
TTGCATGGGACTCCAGTGAA+TGG + chr5_1:2249815-2249834 Msa0710250:intron 50.0%
ATCACACGAGATGGTTGGGA+GGG - chr5_1:2249901-2249920 None:intergenic 50.0%
CACTTTGCGCCGTAGATTGT+TGG + chr5_1:2250191-2250210 Msa0710250:three_prime_UTR 50.0%
!! CAAGTGGGTGGGTTGACTCA+CGG - chr5_1:2243668-2243687 None:intergenic 55.0%
CGTTATCTCACGCGCCAAGT+GGG - chr5_1:2243683-2243702 None:intergenic 55.0%
TCGTTATCTCACGCGCCAAG+TGG - chr5_1:2243684-2243703 None:intergenic 55.0%
!! GGCAGGGTTTTTAAGGGTGG+CGG - chr5_1:2243789-2243808 None:intergenic 55.0%
GTGAGAGATTGGGTCTGGCA+GGG - chr5_1:2243805-2243824 None:intergenic 55.0%
AGTGAGAGATTGGGTCTGGC+AGG - chr5_1:2243806-2243825 None:intergenic 55.0%
CCTGAGTGAGAGATTGGGTC+TGG - chr5_1:2243810-2243829 None:intergenic 55.0%
CCAGACCCAATCTCTCACTC+AGG + chr5_1:2243807-2243826 Msa0710250:five_prime_UTR 55.0%
ACGCGCCTGAGTGAGAGATT+GGG - chr5_1:2243815-2243834 None:intergenic 55.0%
AACCCTAGATGGAAGCGAGG+CGG - chr5_1:2243860-2243879 None:intergenic 55.0%
CCTAACCCTAGATGGAAGCG+AGG - chr5_1:2243863-2243882 None:intergenic 55.0%
! CCTCGCTTCCATCTAGGGTT+AGG + chr5_1:2243860-2243879 Msa0710250:five_prime_UTR 55.0%
TGGAGGGTAACTGCAGTGCT+TGG + chr5_1:2244466-2244485 Msa0710250:five_prime_UTR 55.0%
GGAAGTTAGGAGGGACAGGT+AGG + chr5_1:2245498-2245517 Msa0710250:intron 55.0%
GAAAGGGATGAGCAAGGGGA+AGG - chr5_1:2245691-2245710 None:intergenic 55.0%
!! GGGAGTTGGTGGAGAAATGG+AGG - chr5_1:2245729-2245748 None:intergenic 55.0%
!! GGGCTTTGTTTGGGAGTTGG+TGG - chr5_1:2245740-2245759 None:intergenic 55.0%
! AAACTGTGCTGGTGAGGGTG+AGG - chr5_1:2246245-2246264 None:intergenic 55.0%
ACTGGTCGCAGATCTCCGTT+TGG - chr5_1:2246444-2246463 None:intergenic 55.0%
GATACAAGTGATGCCCAGCG+AGG - chr5_1:2246471-2246490 None:intergenic 55.0%
TGGACGCCCAGAACGTTTGA+TGG + chr5_1:2246608-2246627 Msa0710250:CDS 55.0%
GTTTGCAGCGCCCTATTGCT+TGG + chr5_1:2246787-2246806 Msa0710250:CDS 55.0%
GGACGAAACTGTCTAGTGCC+AGG - chr5_1:2247994-2248013 None:intergenic 55.0%
AGCTCAAGTGCCCAACCAGA+AGG - chr5_1:2248340-2248359 None:intergenic 55.0%
GATCACACGAGATGGTTGGG+AGG - chr5_1:2249902-2249921 None:intergenic 55.0%
CGTGAGTCAACCCACCCACT+TGG + chr5_1:2243666-2243685 Msa0710250:five_prime_UTR 60.0%
ATCTCACGCGCCAAGTGGGT+GGG - chr5_1:2243679-2243698 None:intergenic 60.0%
TATCTCACGCGCCAAGTGGG+TGG - chr5_1:2243680-2243699 None:intergenic 60.0%
GACGCGCCTGAGTGAGAGAT+TGG - chr5_1:2243816-2243835 None:intergenic 60.0%
GAAGCGAGGCGGTGGAGAAA+AGG - chr5_1:2243849-2243868 None:intergenic 60.0%
CACCGCCTCGCTTCCATCTA+GGG + chr5_1:2243855-2243874 Msa0710250:five_prime_UTR 60.0%
!!! TGGGGGTGTTTTTGGAGGGG+AGG + chr5_1:2245545-2245564 Msa0710250:intron 60.0%
!!! GGGGGTGTTTTTGGAGGGGA+GGG + chr5_1:2245546-2245565 Msa0710250:intron 60.0%
!!! GGGGTGTTTTTGGAGGGGAG+GGG + chr5_1:2245547-2245566 Msa0710250:intron 60.0%
TGCGACCAGTGTTACCTCGC+TGG + chr5_1:2246454-2246473 Msa0710250:CDS 60.0%
GCGACCAGTGTTACCTCGCT+GGG + chr5_1:2246455-2246474 Msa0710250:CDS 60.0%
GATGCCCAGCGAGGTAACAC+TGG - chr5_1:2246462-2246481 None:intergenic 60.0%
! TCCAAGTTGGGGGAGTGCAC+AGG + chr5_1:2246975-2246994 Msa0710250:CDS 60.0%
! CCAAGTTGGGGGAGTGCACA+GGG + chr5_1:2246976-2246995 Msa0710250:CDS 60.0%
! CAAGTTGGGGGAGTGCACAG+GGG + chr5_1:2246977-2246996 Msa0710250:CDS 60.0%
GCACTCGTACAGCTTGGCAG+GGG - chr5_1:2248417-2248436 None:intergenic 60.0%
GGCACTCGTACAGCTTGGCA+GGG - chr5_1:2248418-2248437 None:intergenic 60.0%
!! GGAAGGGCACTCGTACAGCT+TGG - chr5_1:2248423-2248442 None:intergenic 60.0%
CCTAGATGGAAGCGAGGCGG+TGG - chr5_1:2243857-2243876 None:intergenic 65.0%
CCACCGCCTCGCTTCCATCT+AGG + chr5_1:2243854-2243873 Msa0710250:five_prime_UTR 65.0%
GGGATGAGCAAGGGGAAGGG+AGG - chr5_1:2245687-2245706 None:intergenic 65.0%
CCCTGTGCACTCCCCCAACT+TGG - chr5_1:2246979-2246998 None:intergenic 65.0%
GGGCACTCGTACAGCTTGGC+AGG - chr5_1:2248419-2248438 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 2243658 2250347 2243658 ID=Msa0710250;Name=Msa0710250
chr5_1 mRNA 2243658 2250347 2243658 ID=Msa0710250-mRNA-1;Parent=Msa0710250;Name=Msa0710250-mRNA-1;_AED=0.12;_eAED=0.12;_QI=516|1|1|1|0.71|0.62|8|408|573
chr5_1 exon 2243658 2243969 2243658 ID=Msa0710250-mRNA-1:exon:645;Parent=Msa0710250-mRNA-1
chr5_1 exon 2244431 2244487 2244431 ID=Msa0710250-mRNA-1:exon:646;Parent=Msa0710250-mRNA-1
chr5_1 exon 2246213 2247459 2246213 ID=Msa0710250-mRNA-1:exon:647;Parent=Msa0710250-mRNA-1
chr5_1 exon 2247906 2248147 2247906 ID=Msa0710250-mRNA-1:exon:648;Parent=Msa0710250-mRNA-1
chr5_1 exon 2248495 2248598 2248495 ID=Msa0710250-mRNA-1:exon:649;Parent=Msa0710250-mRNA-1
chr5_1 exon 2249410 2249541 2249410 ID=Msa0710250-mRNA-1:exon:650;Parent=Msa0710250-mRNA-1
chr5_1 exon 2249689 2249787 2249689 ID=Msa0710250-mRNA-1:exon:651;Parent=Msa0710250-mRNA-1
chr5_1 exon 2249895 2250347 2249895 ID=Msa0710250-mRNA-1:exon:652;Parent=Msa0710250-mRNA-1
chr5_1 five_prime_UTR 2243658 2243969 2243658 ID=Msa0710250-mRNA-1:five_prime_utr;Parent=Msa0710250-mRNA-1
chr5_1 five_prime_UTR 2244431 2244487 2244431 ID=Msa0710250-mRNA-1:five_prime_utr;Parent=Msa0710250-mRNA-1
chr5_1 five_prime_UTR 2246213 2246359 2246213 ID=Msa0710250-mRNA-1:five_prime_utr;Parent=Msa0710250-mRNA-1
chr5_1 CDS 2246360 2247459 2246360 ID=Msa0710250-mRNA-1:cds;Parent=Msa0710250-mRNA-1
chr5_1 CDS 2247906 2248147 2247906 ID=Msa0710250-mRNA-1:cds;Parent=Msa0710250-mRNA-1
chr5_1 CDS 2248495 2248598 2248495 ID=Msa0710250-mRNA-1:cds;Parent=Msa0710250-mRNA-1
chr5_1 CDS 2249410 2249541 2249410 ID=Msa0710250-mRNA-1:cds;Parent=Msa0710250-mRNA-1
chr5_1 CDS 2249689 2249787 2249689 ID=Msa0710250-mRNA-1:cds;Parent=Msa0710250-mRNA-1
chr5_1 CDS 2249895 2249939 2249895 ID=Msa0710250-mRNA-1:cds;Parent=Msa0710250-mRNA-1
chr5_1 three_prime_UTR 2249940 2250347 2249940 ID=Msa0710250-mRNA-1:three_prime_utr;Parent=Msa0710250-mRNA-1
Gene Sequence

>Msa0710250

ATGGAGGCAAACAACGGAAAGGCATCGGATAGGGTTGTGCTTAATCTGAAGCGGAAACATGCTTCTCCACATGCTACATGTCCAAACGGAGATCTGCGACCAGTGTTACCTCGCTGGGCATCACTTGTATCTCCAAGAAACGAAGTTGTCAAACAGATGAAATTGAACAGTTACAAGAGCAAACCGACGAAATCAGAGACTCATATTGGACGGTCATTGGTTAGATATTATATGAATTATAAGAAGAGTGGACGCCCAGAACGTTTGATGGTCTATCAAAATGGTGAATGGAAGGACTTTCCTCAGAATGTTGTTGACTTGGTTAGGAAAGATTTTAATGCGAAGAAAGCAACTGTGGAGGTAGAGTTACATGGCCATCATCTTGTGCTGAATTTTTTGCACATGTATCAGATGAATTTGAAATCTGGTTTGCAGCGCCCTATTGCTTGGATTGACGAGACAGGGTGCTGCTTTTTCCCTGAAATTTATGCTGATTCTGATGAAGAGCCTTATGATCCCTGCAATCAGGATAGTGGAGAAAGTCAGGAATCATTGTTCCAAGATCCTAATGATATTAAATTACATTTAGAAATTGAAATAAATGGAGTCGATGCTTCCAAGTTGGGGGAGTGCACAGGGGAGTCCAATGTTATAGTTAAGCATACTCAAATTGATGCTAAACAAAATGATTTAGAAATTGAAGATAGTAGCAATAACATGGGAAATGGAAATGTTGGTGAAGCCGTTGAGCAAAATAAAAATATAGTTGGTAGTGCAGTTGTATATGGAAGGTTGGATTTGGATACTGTACAGAAGATGTTTCTTAAGGGAACTAGTAGTTTTGGTAGTGCTGACATAGTTGAGATTTACCCCTTCTCAAGTACAGTGATGCAATCACGATTGGAGCTGTTTGAGAAGCAAGCTGAAATTACGAAAAATTGTCGTGGGGATGCTAATGTTCGATATGCTTGGCTTGCTTCTTCTAAAGGAGAACTATCTACTATGATGAAGTGTGGGCTTGGTCATTGTGGAATATCTACATCTAAATGCACACATGGCTTTGGTGTTCATCTTGCAGCTGCTACCTTTCCTTTTGCCAGTGCTAGTCATTGTGATATTGACGAAAATGGGGTTCGACACTTTGTCTTTTGCCGTGTAATAATGGGGAATATGGAGCTTCTCCGTCCTGGCACTAGACAGTTTCGTCCCAGTAGTGGTGACTATGATAGTGGGGTGGATGACATCCACAATCCAAGATACTATATAGTATGGAATATGAATACGAACACCCACATCTGTCCAGAATATGTTGTTAGTTTCAAGGTCTCTTCTGCTGCTGAAGGCCTTCTTTTAGGAAGTAAGACTAAGAATAATATTTTTGGGGTTAACTCAGCTAGCCGAAGTCCTAAAATCTTGTCACGTTCAGAATCTTCTACAGTAGACACTGGAATAGCATCTGGTTCGCGTAGAGGTCCAACATCCCCTTCAATGCCTTTTCCTGTGCTTATTGATGCTCTCAGAAACAAGGTTTCTGCGAAGGATATGGAAGTTATCAATATGCATTATCTGCAATTCAGGGCAAAAAGGATGACTCGTGATGATTTTGCGAAGAAGTTGAGGTTGATTGTGCGAGATGATGCTCTCTTGAGAGCTACAATAGTTGGCCTTCAAAGCAAGATGCCCTCCCAACCATCTCGTGTGATCAAAATGGAACCTTGTTAA
Protein sequence

>Msa0710250

MEANNGKASDRVVLNLKRKHASPHATCPNGDLRPVLPRWASLVSPRNEVVKQMKLNSYKSKPTKSETHIGRSLVRYYMNYKKSGRPERLMVYQNGEWKDFPQNVVDLVRKDFNAKKATVEVELHGHHLVLNFLHMYQMNLKSGLQRPIAWIDETGCCFFPEIYADSDEEPYDPCNQDSGESQESLFQDPNDIKLHLEIEINGVDASKLGECTGESNVIVKHTQIDAKQNDLEIEDSSNNMGNGNVGEAVEQNKNIVGSAVVYGRLDLDTVQKMFLKGTSSFGSADIVEIYPFSSTVMQSRLELFEKQAEITKNCRGDANVRYAWLASSKGELSTMMKCGLGHCGISTSKCTHGFGVHLAAATFPFASASHCDIDENGVRHFVFCRVIMGNMELLRPGTRQFRPSSGDYDSGVDDIHNPRYYIVWNMNTNTHICPEYVVSFKVSSAAEGLLLGSKTKNNIFGVNSASRSPKILSRSESSTVDTGIASGSRRGPTSPSMPFPVLIDALRNKVSAKDMEVINMHYLQFRAKRMTRDDFAKKLRLIVRDDALLRATIVGLQSKMPSQPSRVIKMEPC*