AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0830400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830400 MtrunA17_Chr5g0412301 95.629 572 25 0 1 572 1 572 0.0 1144
Msa0830400 MtrunA17_Chr1g0210871 78.246 570 115 4 1 562 1 569 0.0 900
Msa0830400 MtrunA17_Chr7g0217951 50.000 454 200 6 1 448 1 433 9.14e-141 416
Msa0830400 MtrunA17_Chr5g0410781 51.818 220 101 2 234 448 27 246 4.40e-74 236
Msa0830400 MtrunA17_Chr3g0117631 31.077 325 172 8 233 549 23 303 5.03e-39 145
Msa0830400 MtrunA17_Chr4g0059061 31.438 299 159 8 266 559 46 303 9.24e-38 142
Msa0830400 MtrunA17_Chr8g0380321 28.136 295 160 6 270 553 26 279 1.26e-30 121
Msa0830400 MtrunA17_Chr2g0323961 55.556 72 32 0 90 161 1 72 1.49e-24 100
Msa0830400 MtrunA17_Chr2g0323961 39.735 151 43 4 271 418 72 177 3.90e-24 99.8
Msa0830400 MtrunA17_Chr7g0238751 40.625 96 52 2 235 325 28 123 1.88e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830400 AT1G32230.3 41.667 564 294 13 17 560 21 569 3.32e-136 408
Msa0830400 AT1G32230.6 41.623 567 296 13 17 563 21 572 4.80e-136 408
Msa0830400 AT1G32230.4 41.623 567 296 13 17 563 21 572 4.80e-136 408
Msa0830400 AT1G32230.2 41.623 567 296 13 17 563 21 572 4.80e-136 408
Msa0830400 AT1G32230.5 41.623 567 296 13 17 563 21 572 4.80e-136 408
Msa0830400 AT1G32230.1 41.828 569 293 15 17 563 21 573 2.15e-135 407
Msa0830400 AT2G35510.1 39.619 578 320 11 1 560 1 567 1.58e-124 378
Msa0830400 AT2G35510.3 39.619 578 320 11 1 560 1 567 1.58e-124 378
Msa0830400 AT2G35510.2 40.959 459 252 8 1 448 1 451 7.37e-108 331
Msa0830400 AT1G70440.2 28.190 337 190 8 226 550 2 298 2.03e-38 144
Msa0830400 AT1G70440.1 28.190 337 190 8 226 550 2 298 2.03e-38 144
Msa0830400 AT1G23550.1 33.333 237 117 5 316 548 109 308 9.83e-37 139
Msa0830400 AT5G62520.1 29.644 253 130 5 301 549 89 297 1.26e-26 110
Msa0830400 AT3G47720.1 26.667 270 136 7 292 550 85 303 7.22e-23 100
Msa0830400 AT5G62520.2 33.562 146 88 3 301 442 89 229 3.29e-20 90.5

Find 187 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTGATATTGACGAAAA+TGG 0.188994 5_4:+3475096 Msa0830400:CDS
TCAGAATCAGCATAAATTTC+AGG 0.192300 5_4:-3474014 None:intergenic
TGTTTGACAACTTCGTTTCT+TGG 0.207598 5_4:-3473669 None:intergenic
CATTTAGAAATTGAAATAAA+TGG 0.220833 5_4:+3474119 Msa0830400:CDS
ATATGCATTATCTGCAATTC+AGG 0.249387 5_4:+3476698 Msa0830400:CDS
TTATTCATGGATTTAGATAT+TGG 0.267892 5_4:-3471092 None:intergenic
AGAATTTCATATTGTTTAAT+CGG 0.272064 5_4:+3477467 Msa0830400:three_prime_UTR
GATCAGGATTATAGGTGTTT+TGG 0.273923 5_4:+3471598 Msa0830400:intron
AGCATGACATCAAGAATATT+TGG 0.282378 5_4:-3473396 None:intergenic
CCTCGCTTCCATCTAGGGTT+AGG 0.283026 5_4:+3471037 Msa0830400:five_prime_UTR
ATAGTTCAAACCTTAAAATT+AGG 0.283459 5_4:+3477287 Msa0830400:three_prime_UTR
ATTTAATATCATTAGGATCT+TGG 0.284189 5_4:-3474094 None:intergenic
CCACCGCCTCGCTTCCATCT+AGG 0.287838 5_4:+3471031 Msa0830400:five_prime_UTR
TTGAAACTAACAACATATTC+TGG 0.302685 5_4:-3475288 None:intergenic
TGATAGACCATCAAACGTTC+TGG 0.315101 5_4:-3473792 None:intergenic
TTCTCCACTATCCTGATTGC+AGG 0.320979 5_4:-3474054 None:intergenic
CAAGGTTTCTGCGAAGGATA+TGG 0.322660 5_4:+3476666 Msa0830400:CDS
CCGTGTAATAATGGGGAATA+TGG 0.323010 5_4:+3475140 Msa0830400:CDS
CACTTTGCGCCGTAGATTGT+TGG 0.333114 5_4:+3477370 Msa0830400:three_prime_UTR
ATGGAACCTTGTTAAGTATT+GGG 0.334730 5_4:+3477104 Msa0830400:exon
AGAAAAGTACCTTGCTTTGA+AGG 0.336075 5_4:-3476954 None:intergenic
TGTATATGGAAGGTTGGATT+TGG 0.339592 5_4:+3474316 Msa0830400:CDS
GTTGGTAGTGCAGTTGTATA+TGG 0.343580 5_4:+3474302 Msa0830400:CDS
AAATGTAATTTAATATCATT+AGG 0.344899 5_4:-3474101 None:intergenic
ACCATCTCGTGTGATCAAAA+TGG 0.346697 5_4:+3477085 Msa0830400:CDS
ATCCAAGATACTATATAGTA+TGG 0.349263 5_4:+3475238 Msa0830400:CDS
TGTACAGAAGATGTTTCTTA+AGG 0.349580 5_4:+3474343 Msa0830400:CDS
ATTGTGATATTGACGAAAAT+GGG 0.350719 5_4:+3475097 Msa0830400:CDS
CTGGTAATTACCAGGCAAAA+AGG 0.353126 5_4:+3476854 Msa0830400:intron
TATCAGATGAATTTGAAATC+TGG 0.365305 5_4:+3473942 Msa0830400:CDS
TTCCATACTATATAGTATCT+TGG 0.367221 5_4:-3475240 None:intergenic
GGAGAAAAGAATGTACAATA+TGG 0.368567 5_4:+3471619 Msa0830400:five_prime_UTR
AGAATATGTTGTTAGTTTCA+AGG 0.376305 5_4:+3475290 Msa0830400:CDS
AATGGAACCTTGTTAAGTAT+TGG 0.376678 5_4:+3477103 Msa0830400:exon
GCTTGGCTTGCTTCTTCTAA+AGG 0.378498 5_4:+3474503 Msa0830400:CDS
CTTAAGGGAACTAGTAGTTT+TGG 0.380222 5_4:+3474359 Msa0830400:CDS
GTACAGAAGATGTTTCTTAA+GGG 0.381330 5_4:+3474344 Msa0830400:CDS
GTCTCGTCAATCCAAGCAAT+AGG 0.384507 5_4:-3473975 None:intergenic
ATTGATGAAGATTCTCAGAT+TGG 0.386046 5_4:-3470883 None:intergenic
GACGCGCCTGAGGGAGAGAT+TGG 0.386918 5_4:-3470990 None:intergenic
AGGGAGAGATTGGGTCTGGC+AGG 0.389350 5_4:-3470980 None:intergenic
CGTTTGATGGTCTATCAAAA+TGG 0.393202 5_4:+3473798 Msa0830400:CDS
ATCTTCATCAATAGGTTACT+TGG 0.395668 5_4:+3470894 Msa0830400:five_prime_UTR
TCGTTATCTCACGCGCTATG+TGG 0.396530 5_4:-3470858 None:intergenic
CGAAAATGGGGTTCGACACT+TGG 0.398654 5_4:+3475110 Msa0830400:CDS
GTTTGCAGCGCCCTATTGCT+TGG 0.403920 5_4:+3473964 Msa0830400:CDS
GCAGCAACCAAACAGAATTC+TGG 0.404525 5_4:-3473461 None:intergenic
GACTCATATTGGACGGTCAT+TGG 0.404817 5_4:+3473734 Msa0830400:CDS
GGAGTCGATGCTTCCAAGTT+GGG 0.405561 5_4:+3474140 Msa0830400:CDS
CTCGCTTCCATCTAGGGTTA+GGG 0.413431 5_4:+3471038 Msa0830400:five_prime_UTR
AGAATGTTGTTGACTTGGTT+AGG 0.415750 5_4:+3473841 Msa0830400:CDS
CCAAGGACCAGAATTCTGTT+TGG 0.416022 5_4:+3473454 Msa0830400:five_prime_UTR
AGTAGCAATAACATGGGAAA+TGG 0.417478 5_4:+3474242 Msa0830400:CDS
TCCTGATTGCAGGGATCATA+AGG 0.421377 5_4:-3474044 None:intergenic
TTTGATCACACGAGATGGTT+GGG 0.422810 5_4:-3477081 None:intergenic
CGATGAACCCTAACCCTAGA+TGG 0.425114 5_4:-3471045 None:intergenic
GAATTTCATATTGTTTAATC+GGG 0.425880 5_4:+3477468 Msa0830400:three_prime_UTR
CACCGCCTCGCTTCCATCTA+GGG 0.431468 5_4:+3471032 Msa0830400:five_prime_UTR
GATGAACATGTGAATATTGT+TGG 0.434057 5_4:+3477169 Msa0830400:three_prime_UTR
TCTAAATGCACACATGGCTT+TGG 0.435149 5_4:+3474578 Msa0830400:CDS
TAGTCTTACTTCCTAAAAGA+AGG 0.436907 5_4:-3475679 None:intergenic
ATTTAGATATTGGAGAAGTT+AGG 0.437362 5_4:-3471082 None:intergenic
CGTTATCTCACGCGCTATGT+GGG 0.439339 5_4:-3470857 None:intergenic
GCCTTATGATCCCTGCAATC+AGG 0.440028 5_4:+3474043 Msa0830400:CDS
ACGAAATCAGAGACTCATAT+TGG 0.440224 5_4:+3473723 Msa0830400:CDS
CCAAACAGAATTCTGGTCCT+TGG 0.441566 5_4:-3473454 None:intergenic
GAGAAGTTAGGTTTATGAAA+AGG 0.444693 5_4:-3471070 None:intergenic
TGTGAATATTGTTGGCTCTT+GGG 0.447043 5_4:+3477177 Msa0830400:three_prime_UTR
ATCTGAGAATCTTCATCAAT+AGG 0.449918 5_4:+3470886 Msa0830400:five_prime_UTR
TCCTCAGAATGTTGTTGACT+TGG 0.450948 5_4:+3473836 Msa0830400:CDS
GCGACCAGTGTTACCTCGTT+GGG 0.451664 5_4:+3473632 Msa0830400:CDS
ACTATCATAGTCACCACTAC+TGG 0.457911 5_4:-3475196 None:intergenic
GCGTTTATGATAAAGCTGTT+TGG 0.457999 5_4:+3477309 Msa0830400:three_prime_UTR
TCAGGATAGTGGAGAAAGTC+AGG 0.458623 5_4:+3474061 Msa0830400:CDS
TGCAGTTGTATATGGAAGGT+TGG 0.460207 5_4:+3474310 Msa0830400:CDS
AGTAGTGGTGACTATGATAG+TGG 0.460572 5_4:+3475198 Msa0830400:CDS
ATGTGAATATTGTTGGCTCT+TGG 0.463278 5_4:+3477176 Msa0830400:three_prime_UTR
CAAACAGAATTCTGGTCCTT+GGG 0.470624 5_4:-3473453 None:intergenic
CTCTTGAGAGCTACAATAGT+TGG 0.472193 5_4:+3476931 Msa0830400:CDS
AGCACAGGAAAAGGCATTGA+AGG 0.473023 5_4:-3476625 None:intergenic
CAACGGAAAGGCATCGGATA+GGG 0.473840 5_4:+3473548 Msa0830400:CDS
CAATAGGTTACTTGGAAAAG+AGG 0.478509 5_4:+3470902 Msa0830400:five_prime_UTR
CAGAATCAGCATAAATTTCA+GGG 0.479346 5_4:-3474013 None:intergenic
AGTATGCTTAACTATAACAT+TGG 0.483021 5_4:-3474180 None:intergenic
TCTCGTCAATCCAAGCAATA+GGG 0.485939 5_4:-3473974 None:intergenic
CCTGAGGGAGAGATTGGGTC+TGG 0.488432 5_4:-3470984 None:intergenic
ATGCTAATGTTCGATATGCT+TGG 0.490597 5_4:+3474486 Msa0830400:CDS
AAGGTCTCTTCTGCTGCTGA+AGG 0.492093 5_4:+3475309 Msa0830400:CDS
ATTGCTTGGATTGACGAGAC+AGG 0.495738 5_4:+3473978 Msa0830400:CDS
TAGAAATTAAACCTGGCAAA+AGG 0.497397 5_4:-3474626 None:intergenic
GATAGACCATCAAACGTTCT+GGG 0.497415 5_4:-3473791 None:intergenic
TGGACGCCCAGAACGTTTGA+TGG 0.500372 5_4:+3473785 Msa0830400:CDS
ATACCTCAGGGAATAGCATC+TGG 0.501440 5_4:+3476580 Msa0830400:intron
GAAGCGAGGCGGTGGAGAAA+AGG 0.501669 5_4:-3471023 None:intergenic
ATCTCACGCGCTATGTGGGT+GGG 0.503066 5_4:-3470853 None:intergenic
GCATCAATAAGCACAGGAAA+AGG 0.503405 5_4:-3476634 None:intergenic
TGGAGTCGATGCTTCCAAGT+TGG 0.503473 5_4:+3474139 Msa0830400:CDS
ACTATGATGAAGTGTGGGCT+TGG 0.505685 5_4:+3474536 Msa0830400:CDS
TAAGGTTTGAACTATTGTGC+TGG 0.505767 5_4:-3477279 None:intergenic
TACAGTGATGCAATCACGAT+TGG 0.505775 5_4:+3474418 Msa0830400:CDS
GGGAGAGATTGGGTCTGGCA+GGG 0.505976 5_4:-3470979 None:intergenic
CCAGACCCAATCTCTCCCTC+AGG 0.508806 5_4:+3470984 Msa0830400:five_prime_UTR
GATCCCTGCAATCAGGATAG+TGG 0.509927 5_4:+3474050 Msa0830400:CDS
AATATGGAGCTTCTCCGTCC+TGG 0.513713 5_4:+3475156 Msa0830400:CDS
AAAGGCATTGAAGGGGATGT+TGG 0.517939 5_4:-3476616 None:intergenic
TGCGACCAGTGTTACCTCGT+TGG 0.519288 5_4:+3473631 Msa0830400:CDS
TATCTCACGCGCTATGTGGG+TGG 0.520011 5_4:-3470854 None:intergenic
CCTAGATGGAAGCGAGGCGG+TGG 0.523537 5_4:-3471031 None:intergenic
ACGCGCCTGAGGGAGAGATT+GGG 0.523980 5_4:-3470989 None:intergenic
GAAAAGAATGTACAATATGG+AGG 0.532485 5_4:+3471622 Msa0830400:five_prime_UTR
GGCAAACAACGGAAAGGCAT+CGG 0.532519 5_4:+3473542 Msa0830400:CDS
CTATCATAGTCACCACTACT+GGG 0.534346 5_4:-3475195 None:intergenic
CTATCAAAATGGTGAATGGA+AGG 0.536490 5_4:+3473809 Msa0830400:CDS
CTATATAGTATCTTGGATTG+TGG 0.536691 5_4:-3475233 None:intergenic
AAGTTCAAATATAAAAGCTC+AGG 0.539447 5_4:-3473485 None:intergenic
TGCATCACTGTACTTGAGAA+GGG 0.539798 5_4:-3474407 None:intergenic
TATATGAATTATAAGAAGAG+TGG 0.542935 5_4:+3473765 Msa0830400:CDS
ATATGAGTCTCTGATTTCGT+CGG 0.544734 5_4:-3473720 None:intergenic
CAACATATTCTGGACAGATG+TGG 0.545442 5_4:-3475278 None:intergenic
ACTGGTCGCAGATCTCCGTT+TGG 0.546119 5_4:-3473618 None:intergenic
ACAACGGAAAGGCATCGGAT+AGG 0.546402 5_4:+3473547 Msa0830400:CDS
TGGTCTATCAAAATGGTGAA+TGG 0.549899 5_4:+3473805 Msa0830400:CDS
AACATATTCTGGACAGATGT+GGG 0.551162 5_4:-3475277 None:intergenic
GGACGAAACTGTCTAGTGCC+AGG 0.552779 5_4:-3475174 None:intergenic
CCACATGCTACATGTCCAAA+CGG 0.553167 5_4:+3473603 Msa0830400:CDS
AACATGGGAAATGGAAATGT+TGG 0.556039 5_4:+3474251 Msa0830400:CDS
TATCTACTATGATGAAGTGT+GGG 0.563052 5_4:+3474531 Msa0830400:CDS
TGGAGGGTAACTGCAGTGCT+TGG 0.563869 5_4:+3471639 Msa0830400:five_prime_UTR
TATGTGGGTGGGTTGAGTCA+CGG 0.565357 5_4:-3470842 None:intergenic
GCACAGGAAAAGGCATTGAA+GGG 0.565819 5_4:-3476624 None:intergenic
ATTAAACCTGGCAAAAGGAA+AGG 0.568389 5_4:-3474621 None:intergenic
AATAGTTGGCCTTCAAAGCA+AGG 0.570840 5_4:+3476945 Msa0830400:CDS
CTGAGAGCATCAATAAGCAC+AGG 0.571313 5_4:-3476640 None:intergenic
TATTGATGCTCTCAGAAACA+AGG 0.572331 5_4:+3476648 Msa0830400:CDS
TGAAGATAGTAGCAATAACA+TGG 0.572879 5_4:+3474235 Msa0830400:CDS
CAGAAACAAGGTTTCTGCGA+AGG 0.572993 5_4:+3476660 Msa0830400:CDS
GTAGTGCAGTTGTATATGGA+AGG 0.578361 5_4:+3474306 Msa0830400:CDS
ACCAAGTCAACAACATTCTG+AGG 0.581281 5_4:-3473837 None:intergenic
TTGCTTGGATTGACGAGACA+GGG 0.581940 5_4:+3473979 Msa0830400:CDS
GAGTCGATGCTTCCAAGTTG+GGG 0.583392 5_4:+3474141 Msa0830400:CDS
TTGCATCACTGTACTTGAGA+AGG 0.584101 5_4:-3474408 None:intergenic
AAGTGTGGGCTTGGTCATTG+TGG 0.585698 5_4:+3474545 Msa0830400:CDS
ATCCATGAATAAAATTCCCA+TGG 0.586318 5_4:+3471103 Msa0830400:five_prime_UTR
CCATATTCCCCATTATTACA+CGG 0.586757 5_4:-3475140 None:intergenic
TCTCCACTATCCTGATTGCA+GGG 0.589306 5_4:-3474053 None:intergenic
ATCACACGAGATGGTTGGGA+GGG 0.590498 5_4:-3477077 None:intergenic
AAACTGTGCTGGTGAGGGTG+AGG 0.591437 5_4:-3473419 None:intergenic
TCAAACAAACTGTGCTGGTG+AGG 0.594201 5_4:-3473425 None:intergenic
TGATCTTATCCGTCTTAATG+TGG 0.595394 5_4:+3477130 Msa0830400:three_prime_UTR
AAAAGAATGTACAATATGGA+GGG 0.598654 5_4:+3471623 Msa0830400:five_prime_UTR
AAGTTTCAAACAAACTGTGC+TGG 0.601374 5_4:-3473430 None:intergenic
TATGCATTATCTGCAATTCA+GGG 0.603277 5_4:+3476699 Msa0830400:CDS
AGACAGTTTCGTCCCAGTAG+TGG 0.612844 5_4:+3475183 Msa0830400:CDS
ATAGCATCTGGTTCGCGTAG+AGG 0.613583 5_4:+3476592 Msa0830400:CDS
CAGAGTGTTCCACATTAAGA+CGG 0.614713 5_4:-3477139 None:intergenic
GTAGTGGTGACTATGATAGT+GGG 0.614725 5_4:+3475199 Msa0830400:CDS
TCTACATCTAAATGCACACA+TGG 0.616416 5_4:+3474572 Msa0830400:CDS
CCGTTTGGACATGTAGCATG+TGG 0.622892 5_4:-3473603 None:intergenic
TCATCTCCCAATACTTAACA+AGG 0.623898 5_4:-3477110 None:intergenic
GATGCCCAACGAGGTAACAC+TGG 0.624845 5_4:-3473636 None:intergenic
GGGTTGTGCTTAATCTGAAG+CGG 0.628518 5_4:+3473568 Msa0830400:CDS
GCTATCGAAGTAGCAAACAA+TGG 0.630365 5_4:-3477441 None:intergenic
GATCACACGAGATGGTTGGG+AGG 0.630443 5_4:-3477078 None:intergenic
AGTTTGTTTGAAACTTCCCA+AGG 0.632571 5_4:+3473437 Msa0830400:five_prime_UTR
GGTCAAAATTTGAGACCAAG+AGG 0.634301 5_4:+3471124 Msa0830400:five_prime_UTR
GAAACTGTCTAGTGCCAGGA+CGG 0.638018 5_4:-3475170 None:intergenic
TTGTGATATTGACGAAAATG+GGG 0.640860 5_4:+3475098 Msa0830400:CDS
GCATCACTGTACTTGAGAAG+GGG 0.643866 5_4:-3474406 None:intergenic
CTATCTACTATGATGAAGTG+TGG 0.646279 5_4:+3474530 Msa0830400:CDS
AATCAGAGACTCATATTGGA+CGG 0.648143 5_4:+3473727 Msa0830400:CDS
GAAGATAGTAGCAATAACAT+GGG 0.651958 5_4:+3474236 Msa0830400:CDS
CAAACAAACTGTGCTGGTGA+GGG 0.655112 5_4:-3473424 None:intergenic
CATGGAGGCAAACAACGGAA+AGG 0.657589 5_4:+3473536 Msa0830400:exon
CACAGGAAAAGGCATTGAAG+GGG 0.658134 5_4:-3476623 None:intergenic
ACTGTGGAGGTAGAGTTACA+TGG 0.660219 5_4:+3473888 Msa0830400:CDS
TGCGAAGAAAGCAACTGTGG+AGG 0.668909 5_4:+3473875 Msa0830400:CDS
AGTCGATGCTTCCAAGTTGG+GGG 0.670164 5_4:+3474142 Msa0830400:CDS
AACCCTAGATGGAAGCGAGG+CGG 0.670501 5_4:-3471034 None:intergenic
TAATGCGAAGAAAGCAACTG+TGG 0.675973 5_4:+3473872 Msa0830400:CDS
CCTAACCCTAGATGGAAGCG+AGG 0.679125 5_4:-3471037 None:intergenic
ACAGTGTGAACGAACACGCA+CGG 0.680983 5_4:+3470928 Msa0830400:five_prime_UTR
ATAAACATGGAGGCAAACAA+CGG 0.683583 5_4:+3473531 Msa0830400:exon
ATTGATCTAGTAGATAAACA+TGG 0.692401 5_4:+3473518 Msa0830400:exon
TGGTGACTATGATAGTGGGG+TGG 0.700703 5_4:+3475203 Msa0830400:CDS
TAGTGGTGACTATGATAGTG+GGG 0.714306 5_4:+3475200 Msa0830400:CDS
GATCTAGTAGATAAACATGG+AGG 0.729895 5_4:+3473521 Msa0830400:exon
GATACAAGTGATGCCCAACG+AGG 0.767068 5_4:-3473645 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAAGTTTTAAATTTATAT+TGG + chr5_4:3472304-3472323 Msa0830400:intron 10.0%
!!! TAAATTTATATTGGAATTTT+TGG + chr5_4:3472313-3472332 Msa0830400:intron 10.0%
!! AAATGTAATTTAATATCATT+AGG - chr5_4:3474104-3474123 None:intergenic 10.0%
!! ATTGATGTATAAATAAATAT+GGG - chr5_4:3474959-3474978 None:intergenic 10.0%
!! AACTTAATATATATGAAAAA+AGG - chr5_4:3475873-3475892 None:intergenic 10.0%
!!! TTATTTTGCTTATTCATTTT+TGG + chr5_4:3472400-3472419 Msa0830400:intron 15.0%
!! AATTAAAAAAATTGGGAATA+TGG - chr5_4:3473364-3473383 None:intergenic 15.0%
!! CATTTAGAAATTGAAATAAA+TGG + chr5_4:3474119-3474138 Msa0830400:CDS 15.0%
!!! TATATTTTTATTTTGCTCAA+CGG - chr5_4:3474282-3474301 None:intergenic 15.0%
!! TTTACACAAGTATTTATTTA+AGG + chr5_4:3474740-3474759 Msa0830400:intron 15.0%
!! TTGATGTATAAATAAATATG+GGG - chr5_4:3474958-3474977 None:intergenic 15.0%
!! CATTGATGTATAAATAAATA+TGG - chr5_4:3474960-3474979 None:intergenic 15.0%
!!! TTTTTATTATTCTGTTGTAA+TGG + chr5_4:3475033-3475052 Msa0830400:intron 15.0%
!!! AAGACTAAGAATAATATTTT+TGG + chr5_4:3475695-3475714 Msa0830400:CDS 15.0%
!!! AGACTAAGAATAATATTTTT+GGG + chr5_4:3475696-3475715 Msa0830400:CDS 15.0%
!!! GGAATTGATAATTTAATAAA+AGG + chr5_4:3475999-3476018 Msa0830400:intron 15.0%
!! AGGAAAAAAATTATTTAGAT+GGG + chr5_4:3476123-3476142 Msa0830400:intron 15.0%
!!! ATTTTAATAAAATTCTGAGA+AGG + chr5_4:3476303-3476322 Msa0830400:intron 15.0%
!! AGAATTTCATATTGTTTAAT+CGG + chr5_4:3477467-3477486 Msa0830400:three_prime_UTR 15.0%
!! TTATTCATGGATTTAGATAT+TGG - chr5_4:3471095-3471114 None:intergenic 20.0%
!!! ATATGCTTTTAGTTAATTGT+GGG + chr5_4:3471680-3471699 Msa0830400:intron 20.0%
!! TATGTTAAGATCTATCTTAT+TGG + chr5_4:3472114-3472133 Msa0830400:intron 20.0%
!!! ATATTTTGTTTTTGCATTGT+CGG + chr5_4:3472579-3472598 Msa0830400:intron 20.0%
!! ATAAGGTCTATAAACTTTAA+AGG + chr5_4:3472642-3472661 Msa0830400:intron 20.0%
!! CTTTATTCTTATTAATCAGT+AGG - chr5_4:3473100-3473119 None:intergenic 20.0%
!! AATTAAATCTCTTATCTTCT+TGG + chr5_4:3473194-3473213 Msa0830400:intron 20.0%
!! CCTGGATAATTAAAAAAATT+GGG - chr5_4:3473371-3473390 None:intergenic 20.0%
!!! CCAATTTTTTTAATTATCCA+GGG + chr5_4:3473369-3473388 Msa0830400:intron 20.0%
!! TATATGAATTATAAGAAGAG+TGG + chr5_4:3473765-3473784 Msa0830400:CDS 20.0%
!! ATTTAATATCATTAGGATCT+TGG - chr5_4:3474097-3474116 None:intergenic 20.0%
!! GAGCAAAATAAAAATATAGT+TGG + chr5_4:3474284-3474303 Msa0830400:CDS 20.0%
!!! AATTCAATAGTTTTTTCCTT+TGG + chr5_4:3474715-3474734 Msa0830400:intron 20.0%
!!! AGTATTATAGAACATTTTCA+AGG - chr5_4:3474849-3474868 None:intergenic 20.0%
!! ATAAATAAATATGGGGAAAA+AGG - chr5_4:3474951-3474970 None:intergenic 20.0%
!! AGAAGACATAAAAGAAATAA+AGG - chr5_4:3475347-3475366 None:intergenic 20.0%
!!! AAAGGATCTTATTTTTTGTT+AGG - chr5_4:3475385-3475404 None:intergenic 20.0%
!! TATTATAAACGAAAATGGAA+AGG - chr5_4:3475403-3475422 None:intergenic 20.0%
!!! TCCATTTTCGTTTATAATAT+TGG + chr5_4:3475404-3475423 Msa0830400:intron 20.0%
!! ACCAATATTATAAACGAAAA+TGG - chr5_4:3475408-3475427 None:intergenic 20.0%
!!! TAACTTGTTGATATATGATT+CGG + chr5_4:3475450-3475469 Msa0830400:intron 20.0%
!!! GATATATAATGCATTTTTAC+AGG + chr5_4:3475656-3475675 Msa0830400:intron 20.0%
!!! GACTAAGAATAATATTTTTG+GGG + chr5_4:3475697-3475716 Msa0830400:CDS 20.0%
!! TATATATGAAAAAAGGAAAG+TGG - chr5_4:3475866-3475885 None:intergenic 20.0%
!! ATATAAAAGATGAAACACAT+TGG - chr5_4:3475939-3475958 None:intergenic 20.0%
!! GAGGAAAAAAATTATTTAGA+TGG + chr5_4:3476122-3476141 Msa0830400:intron 20.0%
!!! TATAAATTGTCATTGTTTTC+TGG + chr5_4:3476781-3476800 Msa0830400:intron 20.0%
!!! TATAAATTGTCATTGTTTTC+TGG + chr5_4:3476781-3476800 Msa0830400:intron 20.0%
!! ATAGTTCAAACCTTAAAATT+AGG + chr5_4:3477287-3477306 Msa0830400:three_prime_UTR 20.0%
!! GAATTTCATATTGTTTAATC+GGG + chr5_4:3477468-3477487 Msa0830400:three_prime_UTR 20.0%
! ATTTAGATATTGGAGAAGTT+AGG - chr5_4:3471085-3471104 None:intergenic 25.0%
! AAATCAATTCAATTACCTCT+TGG - chr5_4:3471142-3471161 None:intergenic 25.0%
!!! CATGATTTTCAGTTTTGATT+TGG + chr5_4:3471168-3471187 Msa0830400:intron 25.0%
!! TTTAAGCTTAATTTTGTTGC+TGG + chr5_4:3471371-3471390 Msa0830400:intron 25.0%
!!! ATCTTTTTGATTTTGTGATC+AGG + chr5_4:3471582-3471601 Msa0830400:intron 25.0%
! AAAAGAATGTACAATATGGA+GGG + chr5_4:3471623-3471642 Msa0830400:five_prime_UTR 25.0%
!!! GATATGCTTTTAGTTAATTG+TGG + chr5_4:3471679-3471698 Msa0830400:intron 25.0%
!!! ATCTCTTGTTGTTTTTAGTT+TGG + chr5_4:3471729-3471748 Msa0830400:intron 25.0%
! TATCCACAATCCATAAAAAA+GGG - chr5_4:3471827-3471846 None:intergenic 25.0%
!! CTTTTATGAAAGTCAACAAA+CGG - chr5_4:3471979-3471998 None:intergenic 25.0%
!! TACTGCTGTATTTACATTTT+TGG + chr5_4:3472462-3472481 Msa0830400:intron 25.0%
! TCTAGAAATTAAACATCTGA+TGG - chr5_4:3472533-3472552 None:intergenic 25.0%
!! TCAGATGTTTAATTTCTAGA+AGG + chr5_4:3472533-3472552 Msa0830400:intron 25.0%
!! CAGATGTTTAATTTCTAGAA+GGG + chr5_4:3472534-3472553 Msa0830400:intron 25.0%
! AGTTTATAGACCTTATGATA+AGG - chr5_4:3472638-3472657 None:intergenic 25.0%
!!! TAAACTTTAAAGGCTTTGTT+TGG + chr5_4:3472652-3472671 Msa0830400:intron 25.0%
! GATGCTATACTATTAATCTA+TGG + chr5_4:3473152-3473171 Msa0830400:intron 25.0%
!!! CCCAATTTTTTTAATTATCC+AGG + chr5_4:3473368-3473387 Msa0830400:intron 25.0%
! CCCTGGATAATTAAAAAAAT+TGG - chr5_4:3473372-3473391 None:intergenic 25.0%
! AAGTTCAAATATAAAAGCTC+AGG - chr5_4:3473488-3473507 None:intergenic 25.0%
! ATTGATCTAGTAGATAAACA+TGG + chr5_4:3473518-3473537 Msa0830400:exon 25.0%
!! TATCAGATGAATTTGAAATC+TGG + chr5_4:3473942-3473961 Msa0830400:CDS 25.0%
! AGTATGCTTAACTATAACAT+TGG - chr5_4:3474183-3474202 None:intergenic 25.0%
! AAATTACGAAAAATTGTCGT+GGG + chr5_4:3474462-3474481 Msa0830400:CDS 25.0%
! TGATGATTAGAAATTAAACC+TGG - chr5_4:3474636-3474655 None:intergenic 25.0%
! AATACTTGTGTAAAAACCAA+AGG - chr5_4:3474734-3474753 None:intergenic 25.0%
! CACAAGTATTTATTTAAGGA+TGG + chr5_4:3474744-3474763 Msa0830400:intron 25.0%
! ACAATTGACAATAATAGAAG+TGG - chr5_4:3474813-3474832 None:intergenic 25.0%
!!! GTCTTTTTTACATTCTACTT+TGG + chr5_4:3474979-3474998 Msa0830400:intron 25.0%
! ATTGTGATATTGACGAAAAT+GGG + chr5_4:3475097-3475116 Msa0830400:CDS 25.0%
! ATCCAAGATACTATATAGTA+TGG + chr5_4:3475238-3475257 Msa0830400:CDS 25.0%
! TTCCATACTATATAGTATCT+TGG - chr5_4:3475243-3475262 None:intergenic 25.0%
! TTGAAACTAACAACATATTC+TGG - chr5_4:3475291-3475310 None:intergenic 25.0%
!! AGAATATGTTGTTAGTTTCA+AGG + chr5_4:3475290-3475309 Msa0830400:CDS 25.0%
!!! TGCTTTTTACAAAGGAAATT+TGG - chr5_4:3475821-3475840 None:intergenic 25.0%
!!! AAATGCATTGCTTTTTACAA+AGG - chr5_4:3475829-3475848 None:intergenic 25.0%
! TTATCAATTCCTCTATATTC+TGG - chr5_4:3475990-3476009 None:intergenic 25.0%
! AAAAATTATTTAGATGGGAC+AGG + chr5_4:3476128-3476147 Msa0830400:intron 25.0%
!! TTTTACTATCTAAGCAATCT+AGG + chr5_4:3476377-3476396 Msa0830400:intron 25.0%
!! TCGAATCAATTTTTGAATTC+TGG + chr5_4:3476556-3476575 Msa0830400:intron 25.0%
!! CGAATCAATTTTTGAATTCT+GGG + chr5_4:3476557-3476576 Msa0830400:intron 25.0%
!! TTTAAACAATTAGGAGGTAT+AGG - chr5_4:3477041-3477060 None:intergenic 25.0%
! ATACCTCCTAATTGTTTAAA+CGG + chr5_4:3477041-3477060 Msa0830400:intron 25.0%
! AAGAAACCGTTTAAACAATT+AGG - chr5_4:3477050-3477069 None:intergenic 25.0%
!! ATCATAAACGCCTAATTTTA+AGG - chr5_4:3477300-3477319 None:intergenic 25.0%
!! TGGATATTCCATATTGTTTT+TGG + chr5_4:3477329-3477348 Msa0830400:three_prime_UTR 25.0%
!! TTTTTCTATCCAACAATCTA+CGG - chr5_4:3477382-3477401 None:intergenic 25.0%
ATTGATGAAGATTCTCAGAT+TGG - chr5_4:3470886-3470905 None:intergenic 30.0%
ATCTGAGAATCTTCATCAAT+AGG + chr5_4:3470886-3470905 Msa0830400:five_prime_UTR 30.0%
ATCTTCATCAATAGGTTACT+TGG + chr5_4:3470894-3470913 Msa0830400:five_prime_UTR 30.0%
GAGAAGTTAGGTTTATGAAA+AGG - chr5_4:3471073-3471092 None:intergenic 30.0%
ATCCATGAATAAAATTCCCA+TGG + chr5_4:3471103-3471122 Msa0830400:five_prime_UTR 30.0%
!! GTGTATGTTGTTGACTTTAT+CGG + chr5_4:3471265-3471284 Msa0830400:intron 30.0%
!! CATGCAAAGATTCATTTTTC+AGG - chr5_4:3471509-3471528 None:intergenic 30.0%
! GATTTTGTGATCAGGATTAT+AGG + chr5_4:3471590-3471609 Msa0830400:intron 30.0%
GGAGAAAAGAATGTACAATA+TGG + chr5_4:3471619-3471638 Msa0830400:five_prime_UTR 30.0%
GAAAAGAATGTACAATATGG+AGG + chr5_4:3471622-3471641 Msa0830400:five_prime_UTR 30.0%
ATTGTGGGAGTTCTTAATTT+CGG + chr5_4:3471695-3471714 Msa0830400:intron 30.0%
! GGTTGTTATGTTTTACTCTT+TGG + chr5_4:3471750-3471769 Msa0830400:intron 30.0%
GTATCCACAATCCATAAAAA+AGG - chr5_4:3471828-3471847 None:intergenic 30.0%
! GGATACTTCTATGATGTTTT+TGG + chr5_4:3471842-3471861 Msa0830400:intron 30.0%
! TATGGCTATTGGTTAAACTA+AGG + chr5_4:3471897-3471916 Msa0830400:intron 30.0%
ATGTAAGTAAATGTTGACCA+CGG + chr5_4:3472270-3472289 Msa0830400:intron 30.0%
AATCTGTCTACAAGATTGTT+AGG + chr5_4:3472374-3472393 Msa0830400:intron 30.0%
CTATCTACTATCCAATTACA+GGG - chr5_4:3472502-3472521 None:intergenic 30.0%
ACTATCTACTATCCAATTAC+AGG - chr5_4:3472503-3472522 None:intergenic 30.0%
AACCTAGAGCAATTTATTCA+GGG - chr5_4:3472974-3472993 None:intergenic 30.0%
! ATCAGTAGGAGTATATTGTA+AGG - chr5_4:3473086-3473105 None:intergenic 30.0%
GAATACTTTAATTAGTCGTC+TGG - chr5_4:3473132-3473151 None:intergenic 30.0%
! ATCTATGGACTAAGTATTCT+TGG + chr5_4:3473167-3473186 Msa0830400:intron 30.0%
!!! GTGTTTTTTAGAATTTCACC+TGG + chr5_4:3473222-3473241 Msa0830400:intron 30.0%
GGAATATGGAACTAATGAAT+AGG - chr5_4:3473350-3473369 None:intergenic 30.0%
AGCATGACATCAAGAATATT+TGG - chr5_4:3473399-3473418 None:intergenic 30.0%
AAAAATTCAGCACAAGATGA+TGG - chr5_4:3473914-3473933 None:intergenic 30.0%
CAGAATCAGCATAAATTTCA+GGG - chr5_4:3474016-3474035 None:intergenic 30.0%
TCAGAATCAGCATAAATTTC+AGG - chr5_4:3474017-3474036 None:intergenic 30.0%
TGAAGATAGTAGCAATAACA+TGG + chr5_4:3474235-3474254 Msa0830400:CDS 30.0%
GAAGATAGTAGCAATAACAT+GGG + chr5_4:3474236-3474255 Msa0830400:CDS 30.0%
TGTACAGAAGATGTTTCTTA+AGG + chr5_4:3474343-3474362 Msa0830400:CDS 30.0%
GTACAGAAGATGTTTCTTAA+GGG + chr5_4:3474344-3474363 Msa0830400:CDS 30.0%
GAAATTACGAAAAATTGTCG+TGG + chr5_4:3474461-3474480 Msa0830400:CDS 30.0%
AATTACGAAAAATTGTCGTG+GGG + chr5_4:3474463-3474482 Msa0830400:CDS 30.0%
TATCTACTATGATGAAGTGT+GGG + chr5_4:3474531-3474550 Msa0830400:CDS 30.0%
TAGAAATTAAACCTGGCAAA+AGG - chr5_4:3474629-3474648 None:intergenic 30.0%
TCTACTAATATATCTCTGCA+TGG + chr5_4:3474770-3474789 Msa0830400:intron 30.0%
! TTCTGTTGTAATGGAAAGAA+AGG + chr5_4:3475042-3475061 Msa0830400:intron 30.0%
! TCTGTTGTAATGGAAAGAAA+GGG + chr5_4:3475043-3475062 Msa0830400:intron 30.0%
CATTGTGATATTGACGAAAA+TGG + chr5_4:3475096-3475115 Msa0830400:CDS 30.0%
TTGTGATATTGACGAAAATG+GGG + chr5_4:3475098-3475117 Msa0830400:CDS 30.0%
CTATATAGTATCTTGGATTG+TGG - chr5_4:3475236-3475255 None:intergenic 30.0%
AAGTGATCTGTCAAATATGA+AGG - chr5_4:3475546-3475565 None:intergenic 30.0%
AAACAAGTTTCCAAAAGGAA+GGG - chr5_4:3475622-3475641 None:intergenic 30.0%
GAAAGAAACAAGTTTCCAAA+AGG - chr5_4:3475627-3475646 None:intergenic 30.0%
! ATTTTTACAGGCCTTCTTTT+AGG + chr5_4:3475668-3475687 Msa0830400:intron 30.0%
! TAGTCTTACTTCCTAAAAGA+AGG - chr5_4:3475682-3475701 None:intergenic 30.0%
TTACAAAGGAAATTTGGCAT+CGG - chr5_4:3475815-3475834 None:intergenic 30.0%
! CATTGGCTATCTTAATATCA+AGG - chr5_4:3475922-3475941 None:intergenic 30.0%
GGATAAATTCCAGAATATAG+AGG + chr5_4:3475978-3475997 Msa0830400:intron 30.0%
TAGATATGCAGGCATAATTA+GGG + chr5_4:3476094-3476113 Msa0830400:intron 30.0%
TATAGATTTCTGACTCATCA+TGG + chr5_4:3476332-3476351 Msa0830400:intron 30.0%
ATATGCATTATCTGCAATTC+AGG + chr5_4:3476698-3476717 Msa0830400:CDS 30.0%
TATGCATTATCTGCAATTCA+GGG + chr5_4:3476699-3476718 Msa0830400:CDS 30.0%
GATATCAATTAAGACAGAGA+CGG - chr5_4:3476756-3476775 None:intergenic 30.0%
!! ATTGTTTTCTGGTAATTACC+AGG + chr5_4:3476792-3476811 Msa0830400:intron 30.0%
!! ATTGTTTTCTGGTAATTACC+AGG + chr5_4:3476792-3476811 Msa0830400:intron 30.0%
!!! AAGGCTTTAACTTTTTTGCA+TGG + chr5_4:3476979-3476998 Msa0830400:intron 30.0%
!!! AGGCTTTAACTTTTTTGCAT+GGG + chr5_4:3476980-3476999 Msa0830400:intron 30.0%
AAACCGTTTAAACAATTAGG+AGG - chr5_4:3477047-3477066 None:intergenic 30.0%
AATGGAACCTTGTTAAGTAT+TGG + chr5_4:3477103-3477122 Msa0830400:exon 30.0%
ATGGAACCTTGTTAAGTATT+GGG + chr5_4:3477104-3477123 Msa0830400:exon 30.0%
GATGAACATGTGAATATTGT+TGG + chr5_4:3477169-3477188 Msa0830400:three_prime_UTR 30.0%
CTCAAGTACCAAAAACAATA+TGG - chr5_4:3477340-3477359 None:intergenic 30.0%
CAATAGGTTACTTGGAAAAG+AGG + chr5_4:3470902-3470921 Msa0830400:five_prime_UTR 35.0%
! GACCATGGGAATTTTATTCA+TGG - chr5_4:3471108-3471127 None:intergenic 35.0%
!! TGGTCTCAAATTTTGACCAT+GGG - chr5_4:3471122-3471141 None:intergenic 35.0%
!! TTGGTCTCAAATTTTGACCA+TGG - chr5_4:3471123-3471142 None:intergenic 35.0%
! GAGCTTGGAATTTTCTAGAT+CGG + chr5_4:3471291-3471310 Msa0830400:intron 35.0%
! CCTCTATTGATCTGTTGATT+CGG + chr5_4:3471420-3471439 Msa0830400:intron 35.0%
! GATCAGGATTATAGGTGTTT+TGG + chr5_4:3471598-3471617 Msa0830400:intron 35.0%
! GTGCTTGGTATGCATAATTT+TGG + chr5_4:3471654-3471673 Msa0830400:intron 35.0%
!!! TGCTATACTGCCCTTTTTTA+TGG + chr5_4:3471814-3471833 Msa0830400:intron 35.0%
ATCCTCAAGACTGTCTTATA+TGG + chr5_4:3471879-3471898 Msa0830400:intron 35.0%
AGACTGTCTTATATGGCTAT+TGG + chr5_4:3471886-3471905 Msa0830400:intron 35.0%
! GCTATTGGTTAAACTAAGGA+TGG + chr5_4:3471901-3471920 Msa0830400:intron 35.0%
AATCGAATTGTCCCTGTAAT+TGG + chr5_4:3472488-3472507 Msa0830400:intron 35.0%
GTCACAAGCTACTATTCAAA+CGG - chr5_4:3472616-3472635 None:intergenic 35.0%
! TAGCTTGTGACCTTATCATA+AGG + chr5_4:3472625-3472644 Msa0830400:intron 35.0%
!! AAAGGCTTTGTTTGGAAGTT+AGG + chr5_4:3472660-3472679 Msa0830400:intron 35.0%
TGATCTCACAAAATACACGT+TGG - chr5_4:3472820-3472839 None:intergenic 35.0%
! TTTTGTGAGATCACTATGCA+AGG + chr5_4:3472827-3472846 Msa0830400:intron 35.0%
!! ATAACCTTTGGGCTTTGTTT+GGG - chr5_4:3472926-3472945 None:intergenic 35.0%
!! TATAACCTTTGGGCTTTGTT+TGG - chr5_4:3472927-3472946 None:intergenic 35.0%
AACAAAGCCCAAAGGTTATA+TGG + chr5_4:3472927-3472946 Msa0830400:intron 35.0%
ACAAAGCCCAAAGGTTATAT+GGG + chr5_4:3472928-3472947 Msa0830400:intron 35.0%
AACCCTGAATAAATTGCTCT+AGG + chr5_4:3472969-3472988 Msa0830400:intron 35.0%
GAACCTAGAGCAATTTATTC+AGG - chr5_4:3472975-3472994 None:intergenic 35.0%
CACATGCTTTCTTAAGTTTC+AGG - chr5_4:3473056-3473075 None:intergenic 35.0%
ATCTCTTATCTTCTTGGAGA+TGG + chr5_4:3473200-3473219 Msa0830400:intron 35.0%
AAGTTTCAAACAAACTGTGC+TGG - chr5_4:3473433-3473452 None:intergenic 35.0%
! AGTTTGTTTGAAACTTCCCA+AGG + chr5_4:3473437-3473456 Msa0830400:five_prime_UTR 35.0%
GATCTAGTAGATAAACATGG+AGG + chr5_4:3473521-3473540 Msa0830400:exon 35.0%
ATAAACATGGAGGCAAACAA+CGG + chr5_4:3473531-3473550 Msa0830400:exon 35.0%
TGTTTGACAACTTCGTTTCT+TGG - chr5_4:3473672-3473691 None:intergenic 35.0%
ATATGAGTCTCTGATTTCGT+CGG - chr5_4:3473723-3473742 None:intergenic 35.0%
ACGAAATCAGAGACTCATAT+TGG + chr5_4:3473723-3473742 Msa0830400:CDS 35.0%
AATCAGAGACTCATATTGGA+CGG + chr5_4:3473727-3473746 Msa0830400:CDS 35.0%
! CGTTTGATGGTCTATCAAAA+TGG + chr5_4:3473798-3473817 Msa0830400:CDS 35.0%
TGGTCTATCAAAATGGTGAA+TGG + chr5_4:3473805-3473824 Msa0830400:CDS 35.0%
CTATCAAAATGGTGAATGGA+AGG + chr5_4:3473809-3473828 Msa0830400:CDS 35.0%
!! AGAATGTTGTTGACTTGGTT+AGG + chr5_4:3473841-3473860 Msa0830400:CDS 35.0%
AGTAGCAATAACATGGGAAA+TGG + chr5_4:3474242-3474261 Msa0830400:CDS 35.0%
AACATGGGAAATGGAAATGT+TGG + chr5_4:3474251-3474270 Msa0830400:CDS 35.0%
TGTATATGGAAGGTTGGATT+TGG + chr5_4:3474316-3474335 Msa0830400:CDS 35.0%
! CTTAAGGGAACTAGTAGTTT+TGG + chr5_4:3474359-3474378 Msa0830400:CDS 35.0%
ATGCTAATGTTCGATATGCT+TGG + chr5_4:3474486-3474505 Msa0830400:CDS 35.0%
CTATCTACTATGATGAAGTG+TGG + chr5_4:3474530-3474549 Msa0830400:CDS 35.0%
TCTACATCTAAATGCACACA+TGG + chr5_4:3474572-3474591 Msa0830400:CDS 35.0%
ATTAAACCTGGCAAAAGGAA+AGG - chr5_4:3474624-3474643 None:intergenic 35.0%
! GAAAGAAAGGGATTCAAGTT+TGG + chr5_4:3475055-3475074 Msa0830400:intron 35.0%
! GTCTTTTGCCGTGTAATAAT+GGG + chr5_4:3475132-3475151 Msa0830400:CDS 35.0%
! TCTTTTGCCGTGTAATAATG+GGG + chr5_4:3475133-3475152 Msa0830400:CDS 35.0%
CCATATTCCCCATTATTACA+CGG - chr5_4:3475143-3475162 None:intergenic 35.0%
AACATATTCTGGACAGATGT+GGG - chr5_4:3475280-3475299 None:intergenic 35.0%
GTACTTGATGAGTTAATCAG+AGG + chr5_4:3475426-3475445 Msa0830400:intron 35.0%
!! ATGATTCGGTTCATTCCATT+TGG + chr5_4:3475464-3475483 Msa0830400:intron 35.0%
AAGGAGAAATCAACAAGCTA+GGG - chr5_4:3475504-3475523 None:intergenic 35.0%
GAAACAAGTTTCCAAAAGGA+AGG - chr5_4:3475623-3475642 None:intergenic 35.0%
!!! GTGACAAGATTTTAGGACTT+CGG - chr5_4:3475736-3475755 None:intergenic 35.0%
! TCTGAACGTGACAAGATTTT+AGG - chr5_4:3475743-3475762 None:intergenic 35.0%
ATAAGTAGCAAGTCTTCAGA+AGG + chr5_4:3475957-3475976 Msa0830400:intron 35.0%
!! CAGATAAGTTCTAGATATGC+AGG + chr5_4:3476083-3476102 Msa0830400:intron 35.0%
CTAGATATGCAGGCATAATT+AGG + chr5_4:3476093-3476112 Msa0830400:intron 35.0%
! CTTTTATCAATGCAGTCACT+TGG - chr5_4:3476169-3476188 None:intergenic 35.0%
! CAAGTGACTGCATTGATAAA+AGG + chr5_4:3476167-3476186 Msa0830400:intron 35.0%
! GACTGCATTGATAAAAGGAA+TGG + chr5_4:3476172-3476191 Msa0830400:intron 35.0%
! TGCATTGATAAAAGGAATGG+TGG + chr5_4:3476175-3476194 Msa0830400:intron 35.0%
TAAGCAATCTAGGTTTCAGT+CGG + chr5_4:3476387-3476406 Msa0830400:intron 35.0%
TATTGATGCTCTCAGAAACA+AGG + chr5_4:3476648-3476667 Msa0830400:CDS 35.0%
!! TAGTGTAAAACTAGCTTTGC+TGG + chr5_4:3476726-3476745 Msa0830400:intron 35.0%
! ATGATTTTGCGAAGAAGTTG+AGG + chr5_4:3476887-3476906 Msa0830400:CDS 35.0%
!! AGAAAAGTACCTTGCTTTGA+AGG - chr5_4:3476957-3476976 None:intergenic 35.0%
!! AAGCAAGGTACTTTTCTCAA+AGG + chr5_4:3476960-3476979 Msa0830400:intron 35.0%
TGAATGGTTTATCTGCTACA+TGG + chr5_4:3477010-3477029 Msa0830400:intron 35.0%
TCATCTCCCAATACTTAACA+AGG - chr5_4:3477113-3477132 None:intergenic 35.0%
TGATCTTATCCGTCTTAATG+TGG + chr5_4:3477130-3477149 Msa0830400:three_prime_UTR 35.0%
!! ATGTGAATATTGTTGGCTCT+TGG + chr5_4:3477176-3477195 Msa0830400:three_prime_UTR 35.0%
!! TGTGAATATTGTTGGCTCTT+GGG + chr5_4:3477177-3477196 Msa0830400:three_prime_UTR 35.0%
TAAGGTTTGAACTATTGTGC+TGG - chr5_4:3477282-3477301 None:intergenic 35.0%
GCGTTTATGATAAAGCTGTT+TGG + chr5_4:3477309-3477328 Msa0830400:three_prime_UTR 35.0%
! GGTCAAAATTTGAGACCAAG+AGG + chr5_4:3471124-3471143 Msa0830400:five_prime_UTR 40.0%
!! TGACTTTATCGGTTTGAGCT+TGG + chr5_4:3471276-3471295 Msa0830400:intron 40.0%
CCGAATCAACAGATCAATAG+AGG - chr5_4:3471423-3471442 None:intergenic 40.0%
!! CTATTGATCTGTTGATTCGG+TGG + chr5_4:3471423-3471442 Msa0830400:intron 40.0%
!! TGTTGATTCGGTGGTAGATT+AGG + chr5_4:3471432-3471451 Msa0830400:intron 40.0%
!! GTTGATTCGGTGGTAGATTA+GGG + chr5_4:3471433-3471452 Msa0830400:intron 40.0%
!!! CTGCCCTTTTTTATGGATTG+TGG + chr5_4:3471821-3471840 Msa0830400:intron 40.0%
AGCCATATAAGACAGTCTTG+AGG - chr5_4:3471884-3471903 None:intergenic 40.0%
! AGATCAAAGAGAGCGCAAAA+AGG - chr5_4:3472170-3472189 None:intergenic 40.0%
CTTGTTGCTATGTAATTCCG+TGG - chr5_4:3472290-3472309 None:intergenic 40.0%
!! GCTTTGTTTGGAAGTTAGGA+GGG + chr5_4:3472664-3472683 Msa0830400:intron 40.0%
! AGTGGAATCCATCAACCTTT+TGG + chr5_4:3472703-3472722 Msa0830400:intron 40.0%
! GTGGAATCCATCAACCTTTT+GGG + chr5_4:3472704-3472723 Msa0830400:intron 40.0%
! TGGAATCCATCAACCTTTTG+GGG + chr5_4:3472705-3472724 Msa0830400:intron 40.0%
TCTCACAAAATACACGTTGG+AGG - chr5_4:3472817-3472836 None:intergenic 40.0%
CAAAGCCCAAAGGTTATATG+GGG + chr5_4:3472929-3472948 Msa0830400:intron 40.0%
TTAAGTTTCAGGCACCATGT+CGG - chr5_4:3473045-3473064 None:intergenic 40.0%
! CAAGAATATTTGGAACTCCC+TGG - chr5_4:3473389-3473408 None:intergenic 40.0%
CAAACAGAATTCTGGTCCTT+GGG - chr5_4:3473456-3473475 None:intergenic 40.0%
GATAGACCATCAAACGTTCT+GGG - chr5_4:3473794-3473813 None:intergenic 40.0%
TGATAGACCATCAAACGTTC+TGG - chr5_4:3473795-3473814 None:intergenic 40.0%
! TCCTCAGAATGTTGTTGACT+TGG + chr5_4:3473836-3473855 Msa0830400:CDS 40.0%
ACCAAGTCAACAACATTCTG+AGG - chr5_4:3473840-3473859 None:intergenic 40.0%
TAATGCGAAGAAAGCAACTG+TGG + chr5_4:3473872-3473891 Msa0830400:CDS 40.0%
TCTCGTCAATCCAAGCAATA+GGG - chr5_4:3473977-3473996 None:intergenic 40.0%
!! GTTGGTAGTGCAGTTGTATA+TGG + chr5_4:3474302-3474321 Msa0830400:CDS 40.0%
GTAGTGCAGTTGTATATGGA+AGG + chr5_4:3474306-3474325 Msa0830400:CDS 40.0%
TGCAGTTGTATATGGAAGGT+TGG + chr5_4:3474310-3474329 Msa0830400:CDS 40.0%
TGCATCACTGTACTTGAGAA+GGG - chr5_4:3474410-3474429 None:intergenic 40.0%
TTGCATCACTGTACTTGAGA+AGG - chr5_4:3474411-3474430 None:intergenic 40.0%
TACAGTGATGCAATCACGAT+TGG + chr5_4:3474418-3474437 Msa0830400:CDS 40.0%
TCTAAATGCACACATGGCTT+TGG + chr5_4:3474578-3474597 Msa0830400:CDS 40.0%
! GGTCTTTTGCCGTGTAATAA+TGG + chr5_4:3475131-3475150 Msa0830400:CDS 40.0%
! CCGTGTAATAATGGGGAATA+TGG + chr5_4:3475140-3475159 Msa0830400:CDS 40.0%
CTATCATAGTCACCACTACT+GGG - chr5_4:3475198-3475217 None:intergenic 40.0%
ACTATCATAGTCACCACTAC+TGG - chr5_4:3475199-3475218 None:intergenic 40.0%
AGTAGTGGTGACTATGATAG+TGG + chr5_4:3475198-3475217 Msa0830400:CDS 40.0%
GTAGTGGTGACTATGATAGT+GGG + chr5_4:3475199-3475218 Msa0830400:CDS 40.0%
! TAGTGGTGACTATGATAGTG+GGG + chr5_4:3475200-3475219 Msa0830400:CDS 40.0%
CAACATATTCTGGACAGATG+TGG - chr5_4:3475281-3475300 None:intergenic 40.0%
TTCGGTTCATTCCATTTGGA+TGG + chr5_4:3475468-3475487 Msa0830400:intron 40.0%
GTTCATTCCATTTGGATGGA+GGG + chr5_4:3475472-3475491 Msa0830400:intron 40.0%
GAAGGAGAAATCAACAAGCT+AGG - chr5_4:3475505-3475524 None:intergenic 40.0%
!! AGCTTGTTGATTTCTCCTTC+TGG + chr5_4:3475505-3475524 Msa0830400:intron 40.0%
!! TGTTGATTTCTCCTTCTGGT+TGG + chr5_4:3475509-3475528 Msa0830400:intron 40.0%
! GTTGATTTCTCCTTCTGGTT+GGG + chr5_4:3475510-3475529 Msa0830400:intron 40.0%
TTGACAGATCACTTCATGTC+TGG + chr5_4:3475552-3475571 Msa0830400:intron 40.0%
! TGCAGGCATAATTAGGGTTT+TGG + chr5_4:3476100-3476119 Msa0830400:intron 40.0%
!! AGGCATAATTAGGGTTTTGG+AGG + chr5_4:3476103-3476122 Msa0830400:intron 40.0%
!!! CTGACTCATCATGGTTTTGA+AGG + chr5_4:3476341-3476360 Msa0830400:intron 40.0%
!! TTTGAATTCTGGGATACCTC+AGG + chr5_4:3476567-3476586 Msa0830400:intron 40.0%
!! TTGAATTCTGGGATACCTCA+GGG + chr5_4:3476568-3476587 Msa0830400:intron 40.0%
GCATCAATAAGCACAGGAAA+AGG - chr5_4:3476637-3476656 None:intergenic 40.0%
CTGGTAATTACCAGGCAAAA+AGG + chr5_4:3476800-3476819 Msa0830400:intron 40.0%
! AATGAGTCATCCTTTTTGCC+TGG - chr5_4:3476813-3476832 None:intergenic 40.0%
CTGGTAATTACCAGGCAAAA+AGG + chr5_4:3476800-3476819 Msa0830400:intron 40.0%
CTCTTGAGAGCTACAATAGT+TGG + chr5_4:3476931-3476950 Msa0830400:CDS 40.0%
!! AATAGTTGGCCTTCAAAGCA+AGG + chr5_4:3476945-3476964 Msa0830400:CDS 40.0%
GTAGCAGATAAACCATTCAC+TGG - chr5_4:3477009-3477028 None:intergenic 40.0%
TTTGATCACACGAGATGGTT+GGG - chr5_4:3477084-3477103 None:intergenic 40.0%
! TTTTGATCACACGAGATGGT+TGG - chr5_4:3477085-3477104 None:intergenic 40.0%
ACCATCTCGTGTGATCAAAA+TGG + chr5_4:3477085-3477104 Msa0830400:CDS 40.0%
!! TCCATTTTGATCACACGAGA+TGG - chr5_4:3477089-3477108 None:intergenic 40.0%
! CAGAGTGTTCCACATTAAGA+CGG - chr5_4:3477142-3477161 None:intergenic 40.0%
GCTATCGAAGTAGCAAACAA+TGG - chr5_4:3477444-3477463 None:intergenic 40.0%
TTCGGTGGTAGATTAGGGAT+TGG + chr5_4:3471438-3471457 Msa0830400:intron 45.0%
!! GGCTTTGTTTGGAAGTTAGG+AGG + chr5_4:3472663-3472682 Msa0830400:intron 45.0%
! GGAATCCATCAACCTTTTGG+GGG + chr5_4:3472706-3472725 Msa0830400:intron 45.0%
AAACACCCCCAAAAGGTTGA+TGG - chr5_4:3472714-3472733 None:intergenic 45.0%
!!! CAACCTTTTGGGGGTGTTTT+TGG + chr5_4:3472715-3472734 Msa0830400:intron 45.0%
!!! CTTTTGGGGGTGTTTTTGGA+GGG + chr5_4:3472719-3472738 Msa0830400:intron 45.0%
!!! TTTTGGGGGTGTTTTTGGAG+GGG + chr5_4:3472720-3472739 Msa0830400:intron 45.0%
TGTGAGATCACTATGCAAGG+TGG + chr5_4:3472830-3472849 Msa0830400:intron 45.0%
GTGAGATCACTATGCAAGGT+GGG + chr5_4:3472831-3472850 Msa0830400:intron 45.0%
GGAAGGGATTTGAGGAGAAA+GGG - chr5_4:3472884-3472903 None:intergenic 45.0%
AAATGGAGGGAAGGGATTTG+AGG - chr5_4:3472892-3472911 None:intergenic 45.0%
!! TTTGGGAGTTGGTGGAGAAA+TGG - chr5_4:3472909-3472928 None:intergenic 45.0%
!! TTTGGGCTTTGTTTGGGAGT+TGG - chr5_4:3472920-3472939 None:intergenic 45.0%
AACTCCCAAACAAAGCCCAA+AGG + chr5_4:3472919-3472938 Msa0830400:intron 45.0%
AGCCACCCCATATAACCTTT+GGG - chr5_4:3472937-3472956 None:intergenic 45.0%
! TCTAAAGCACTTCAGCTTCC+AGG - chr5_4:3473243-3473262 None:intergenic 45.0%
! CAAACAAACTGTGCTGGTGA+GGG - chr5_4:3473427-3473446 None:intergenic 45.0%
! TCAAACAAACTGTGCTGGTG+AGG - chr5_4:3473428-3473447 None:intergenic 45.0%
CCAAACAGAATTCTGGTCCT+TGG - chr5_4:3473457-3473476 None:intergenic 45.0%
CCAAGGACCAGAATTCTGTT+TGG + chr5_4:3473454-3473473 Msa0830400:five_prime_UTR 45.0%
GCAGCAACCAAACAGAATTC+TGG - chr5_4:3473464-3473483 None:intergenic 45.0%
GGGTTGTGCTTAATCTGAAG+CGG + chr5_4:3473568-3473587 Msa0830400:CDS 45.0%
CCACATGCTACATGTCCAAA+CGG + chr5_4:3473603-3473622 Msa0830400:CDS 45.0%
GACTCATATTGGACGGTCAT+TGG + chr5_4:3473734-3473753 Msa0830400:CDS 45.0%
ACTGTGGAGGTAGAGTTACA+TGG + chr5_4:3473888-3473907 Msa0830400:CDS 45.0%
GTCTCGTCAATCCAAGCAAT+AGG - chr5_4:3473978-3473997 None:intergenic 45.0%
ATTGCTTGGATTGACGAGAC+AGG + chr5_4:3473978-3473997 Msa0830400:CDS 45.0%
TTGCTTGGATTGACGAGACA+GGG + chr5_4:3473979-3473998 Msa0830400:CDS 45.0%
TCCTGATTGCAGGGATCATA+AGG - chr5_4:3474047-3474066 None:intergenic 45.0%
TCTCCACTATCCTGATTGCA+GGG - chr5_4:3474056-3474075 None:intergenic 45.0%
TTCTCCACTATCCTGATTGC+AGG - chr5_4:3474057-3474076 None:intergenic 45.0%
!! TCAGGATAGTGGAGAAAGTC+AGG + chr5_4:3474061-3474080 Msa0830400:CDS 45.0%
GCATCACTGTACTTGAGAAG+GGG - chr5_4:3474409-3474428 None:intergenic 45.0%
!! GCTTGGCTTGCTTCTTCTAA+AGG + chr5_4:3474503-3474522 Msa0830400:CDS 45.0%
ACTATGATGAAGTGTGGGCT+TGG + chr5_4:3474536-3474555 Msa0830400:CDS 45.0%
GGTTCATTCCATTTGGATGG+AGG + chr5_4:3475471-3475490 Msa0830400:intron 45.0%
GATGAAACCCTCCATCCAAA+TGG - chr5_4:3475482-3475501 None:intergenic 45.0%
! CAAAGGAAATTTGGCATCGG+AGG - chr5_4:3475812-3475831 None:intergenic 45.0%
ATACCTCAGGGAATAGCATC+TGG + chr5_4:3476580-3476599 Msa0830400:intron 45.0%
!! AAAGGCATTGAAGGGGATGT+TGG - chr5_4:3476619-3476638 None:intergenic 45.0%
!! CACAGGAAAAGGCATTGAAG+GGG - chr5_4:3476626-3476645 None:intergenic 45.0%
!! GCACAGGAAAAGGCATTGAA+GGG - chr5_4:3476627-3476646 None:intergenic 45.0%
!! AGCACAGGAAAAGGCATTGA+AGG - chr5_4:3476628-3476647 None:intergenic 45.0%
!! CTGAGAGCATCAATAAGCAC+AGG - chr5_4:3476643-3476662 None:intergenic 45.0%
CAGAAACAAGGTTTCTGCGA+AGG + chr5_4:3476660-3476679 Msa0830400:CDS 45.0%
CAAGGTTTCTGCGAAGGATA+TGG + chr5_4:3476666-3476685 Msa0830400:CDS 45.0%
!! TTAAATTATAATATAGATTA+GGG - chr5_4:3471482-3471501 None:intergenic 5.0%
!! ATTAAATTATAATATAGATT+AGG - chr5_4:3471483-3471502 None:intergenic 5.0%
!! TATGTGGGTGGGTTGAGTCA+CGG - chr5_4:3470845-3470864 None:intergenic 50.0%
CGTTATCTCACGCGCTATGT+GGG - chr5_4:3470860-3470879 None:intergenic 50.0%
TCGTTATCTCACGCGCTATG+TGG - chr5_4:3470861-3470880 None:intergenic 50.0%
ACAGTGTGAACGAACACGCA+CGG + chr5_4:3470928-3470947 Msa0830400:five_prime_UTR 50.0%
!! GGTTTTTAAGGGTGGCGGTT+TGG - chr5_4:3470961-3470980 None:intergenic 50.0%
!! TCTGGCAGGGTTTTTAAGGG+TGG - chr5_4:3470969-3470988 None:intergenic 50.0%
! GGGTCTGGCAGGGTTTTTAA+GGG - chr5_4:3470972-3470991 None:intergenic 50.0%
! TGGGTCTGGCAGGGTTTTTA+AGG - chr5_4:3470973-3470992 None:intergenic 50.0%
ATGAAAAACGACGCGCCTGA+GGG - chr5_4:3471002-3471021 None:intergenic 50.0%
TATGAAAAACGACGCGCCTG+AGG - chr5_4:3471003-3471022 None:intergenic 50.0%
! CTCGCTTCCATCTAGGGTTA+GGG + chr5_4:3471038-3471057 Msa0830400:five_prime_UTR 50.0%
CGATGAACCCTAACCCTAGA+TGG - chr5_4:3471048-3471067 None:intergenic 50.0%
GTTTGGAAGTTAGGAGGGAC+AGG + chr5_4:3472669-3472688 Msa0830400:intron 50.0%
GAAGTTAGGAGGGACAGGTA+GGG + chr5_4:3472674-3472693 Msa0830400:intron 50.0%
GGACAGGTAGGGAAAAAGAG+TGG + chr5_4:3472685-3472704 Msa0830400:intron 50.0%
CCTCCAAAAACACCCCCAAA+AGG - chr5_4:3472721-3472740 None:intergenic 50.0%
!!! CCTTTTGGGGGTGTTTTTGG+AGG + chr5_4:3472718-3472737 Msa0830400:intron 50.0%
AAAGGGATGAGCAAGGGGAA+GGG - chr5_4:3472867-3472886 None:intergenic 50.0%
AGGAGAAAGGGATGAGCAAG+GGG - chr5_4:3472872-3472891 None:intergenic 50.0%
GAGGAGAAAGGGATGAGCAA+GGG - chr5_4:3472873-3472892 None:intergenic 50.0%
TGAGGAGAAAGGGATGAGCA+AGG - chr5_4:3472874-3472893 None:intergenic 50.0%
GGGAAGGGATTTGAGGAGAA+AGG - chr5_4:3472885-3472904 None:intergenic 50.0%
TGGTGGAGAAATGGAGGGAA+GGG - chr5_4:3472900-3472919 None:intergenic 50.0%
TTGGTGGAGAAATGGAGGGA+AGG - chr5_4:3472901-3472920 None:intergenic 50.0%
!! GGAGTTGGTGGAGAAATGGA+GGG - chr5_4:3472905-3472924 None:intergenic 50.0%
AGCCCAAAGGTTATATGGGG+TGG + chr5_4:3472932-3472951 Msa0830400:intron 50.0%
CAGCCACCCCATATAACCTT+TGG - chr5_4:3472938-3472957 None:intergenic 50.0%
ACCTTTCATAGCAGCCGACA+TGG + chr5_4:3473028-3473047 Msa0830400:intron 50.0%
! ACCATGTCGGCTGCTATGAA+AGG - chr5_4:3473032-3473051 None:intergenic 50.0%
CATGGAGGCAAACAACGGAA+AGG + chr5_4:3473536-3473555 Msa0830400:exon 50.0%
! GGCAAACAACGGAAAGGCAT+CGG + chr5_4:3473542-3473561 Msa0830400:CDS 50.0%
!! ACAACGGAAAGGCATCGGAT+AGG + chr5_4:3473547-3473566 Msa0830400:CDS 50.0%
!! CAACGGAAAGGCATCGGATA+GGG + chr5_4:3473548-3473567 Msa0830400:CDS 50.0%
CCGTTTGGACATGTAGCATG+TGG - chr5_4:3473606-3473625 None:intergenic 50.0%
GATACAAGTGATGCCCAACG+AGG - chr5_4:3473648-3473667 None:intergenic 50.0%
TGCGAAGAAAGCAACTGTGG+AGG + chr5_4:3473875-3473894 Msa0830400:CDS 50.0%
GCCTTATGATCCCTGCAATC+AGG + chr5_4:3474043-3474062 Msa0830400:CDS 50.0%
GATCCCTGCAATCAGGATAG+TGG + chr5_4:3474050-3474069 Msa0830400:CDS 50.0%
TGGAGTCGATGCTTCCAAGT+TGG + chr5_4:3474139-3474158 Msa0830400:CDS 50.0%
GGAGTCGATGCTTCCAAGTT+GGG + chr5_4:3474140-3474159 Msa0830400:CDS 50.0%
GAGTCGATGCTTCCAAGTTG+GGG + chr5_4:3474141-3474160 Msa0830400:CDS 50.0%
! AGTCGATGCTTCCAAGTTGG+GGG + chr5_4:3474142-3474161 Msa0830400:CDS 50.0%
! AAGTGTGGGCTTGGTCATTG+TGG + chr5_4:3474545-3474564 Msa0830400:CDS 50.0%
! CTGCTACCTTTCCTTTTGCC+AGG + chr5_4:3474615-3474634 Msa0830400:CDS 50.0%
CGAAAATGGGGTTCGACACT+TGG + chr5_4:3475110-3475129 Msa0830400:CDS 50.0%
AATATGGAGCTTCTCCGTCC+TGG + chr5_4:3475156-3475175 Msa0830400:CDS 50.0%
GAAACTGTCTAGTGCCAGGA+CGG - chr5_4:3475173-3475192 None:intergenic 50.0%
AGACAGTTTCGTCCCAGTAG+TGG + chr5_4:3475183-3475202 Msa0830400:CDS 50.0%
!! TGGTGACTATGATAGTGGGG+TGG + chr5_4:3475203-3475222 Msa0830400:CDS 50.0%
AAGGTCTCTTCTGCTGCTGA+AGG + chr5_4:3475309-3475328 Msa0830400:CDS 50.0%
! TGTACGAGTGCCCTTCCTTT+TGG + chr5_4:3475609-3475628 Msa0830400:intron 50.0%
GAACCAGATGCTATTCCCTG+AGG - chr5_4:3476586-3476605 None:intergenic 50.0%
! ATAGCATCTGGTTCGCGTAG+AGG + chr5_4:3476592-3476611 Msa0830400:CDS 50.0%
! CACGAGTCATCCTTTTTGCC+TGG - chr5_4:3476867-3476886 None:intergenic 50.0%
TTGCATGGGACTCCAGTGAA+TGG + chr5_4:3476994-3477013 Msa0830400:intron 50.0%
ATCACACGAGATGGTTGGGA+GGG - chr5_4:3477080-3477099 None:intergenic 50.0%
CACTTTGCGCCGTAGATTGT+TGG + chr5_4:3477370-3477389 Msa0830400:three_prime_UTR 50.0%
ATCTCACGCGCTATGTGGGT+GGG - chr5_4:3470856-3470875 None:intergenic 55.0%
TATCTCACGCGCTATGTGGG+TGG - chr5_4:3470857-3470876 None:intergenic 55.0%
!! GGCAGGGTTTTTAAGGGTGG+CGG - chr5_4:3470966-3470985 None:intergenic 55.0%
AACCCTAGATGGAAGCGAGG+CGG - chr5_4:3471037-3471056 None:intergenic 55.0%
CCTAACCCTAGATGGAAGCG+AGG - chr5_4:3471040-3471059 None:intergenic 55.0%
! CCTCGCTTCCATCTAGGGTT+AGG + chr5_4:3471037-3471056 Msa0830400:five_prime_UTR 55.0%
TGGAGGGTAACTGCAGTGCT+TGG + chr5_4:3471639-3471658 Msa0830400:five_prime_UTR 55.0%
GGAAGTTAGGAGGGACAGGT+AGG + chr5_4:3472673-3472692 Msa0830400:intron 55.0%
GAAAGGGATGAGCAAGGGGA+AGG - chr5_4:3472868-3472887 None:intergenic 55.0%
!! GGGAGTTGGTGGAGAAATGG+AGG - chr5_4:3472906-3472925 None:intergenic 55.0%
!! GGGCTTTGTTTGGGAGTTGG+TGG - chr5_4:3472917-3472936 None:intergenic 55.0%
! AAACTGTGCTGGTGAGGGTG+AGG - chr5_4:3473422-3473441 None:intergenic 55.0%
ACTGGTCGCAGATCTCCGTT+TGG - chr5_4:3473621-3473640 None:intergenic 55.0%
TGCGACCAGTGTTACCTCGT+TGG + chr5_4:3473631-3473650 Msa0830400:CDS 55.0%
GCGACCAGTGTTACCTCGTT+GGG + chr5_4:3473632-3473651 Msa0830400:CDS 55.0%
GATGCCCAACGAGGTAACAC+TGG - chr5_4:3473639-3473658 None:intergenic 55.0%
TGGACGCCCAGAACGTTTGA+TGG + chr5_4:3473785-3473804 Msa0830400:CDS 55.0%
GTTTGCAGCGCCCTATTGCT+TGG + chr5_4:3473964-3473983 Msa0830400:CDS 55.0%
GGACGAAACTGTCTAGTGCC+AGG - chr5_4:3475177-3475196 None:intergenic 55.0%
AGCTCAAGTGCCCAACCAGA+AGG - chr5_4:3475523-3475542 None:intergenic 55.0%
GATCACACGAGATGGTTGGG+AGG - chr5_4:3477081-3477100 None:intergenic 55.0%
GGGAGAGATTGGGTCTGGCA+GGG - chr5_4:3470982-3471001 None:intergenic 60.0%
AGGGAGAGATTGGGTCTGGC+AGG - chr5_4:3470983-3471002 None:intergenic 60.0%
CCTGAGGGAGAGATTGGGTC+TGG - chr5_4:3470987-3471006 None:intergenic 60.0%
CCAGACCCAATCTCTCCCTC+AGG + chr5_4:3470984-3471003 Msa0830400:five_prime_UTR 60.0%
ACGCGCCTGAGGGAGAGATT+GGG - chr5_4:3470992-3471011 None:intergenic 60.0%
GAAGCGAGGCGGTGGAGAAA+AGG - chr5_4:3471026-3471045 None:intergenic 60.0%
CACCGCCTCGCTTCCATCTA+GGG + chr5_4:3471032-3471051 Msa0830400:five_prime_UTR 60.0%
!!! TGGGGGTGTTTTTGGAGGGG+AGG + chr5_4:3472723-3472742 Msa0830400:intron 60.0%
!!! GGGGGTGTTTTTGGAGGGGA+GGG + chr5_4:3472724-3472743 Msa0830400:intron 60.0%
!!! GGGGTGTTTTTGGAGGGGAG+GGG + chr5_4:3472725-3472744 Msa0830400:intron 60.0%
! TCCAAGTTGGGGGAGTGCAC+AGG + chr5_4:3474152-3474171 Msa0830400:CDS 60.0%
! CCAAGTTGGGGGAGTGCACA+GGG + chr5_4:3474153-3474172 Msa0830400:CDS 60.0%
! CAAGTTGGGGGAGTGCACAG+GGG + chr5_4:3474154-3474173 Msa0830400:CDS 60.0%
!! GGAAGGGCACTCGTACAGCT+TGG - chr5_4:3475606-3475625 None:intergenic 60.0%
GACGCGCCTGAGGGAGAGAT+TGG - chr5_4:3470993-3471012 None:intergenic 65.0%
CCTAGATGGAAGCGAGGCGG+TGG - chr5_4:3471034-3471053 None:intergenic 65.0%
CCACCGCCTCGCTTCCATCT+AGG + chr5_4:3471031-3471050 Msa0830400:five_prime_UTR 65.0%
GGGATGAGCAAGGGGAAGGG+AGG - chr5_4:3472864-3472883 None:intergenic 65.0%
CCCTGTGCACTCCCCCAACT+TGG - chr5_4:3474156-3474175 None:intergenic 65.0%
GGGCACTCGTACAGCTTGGC+AGG - chr5_4:3475602-3475621 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 3470835 3477530 3470835 ID=Msa0830400;Name=Msa0830400
chr5_4 mRNA 3470835 3477530 3470835 ID=Msa0830400-mRNA-1;Parent=Msa0830400;Name=Msa0830400-mRNA-1;_AED=0.12;_eAED=0.12;_QI=515|0.85|0.87|1|0.71|0.62|8|412|573
chr5_4 exon 3470835 3471145 3470835 ID=Msa0830400-mRNA-1:exon:1325;Parent=Msa0830400-mRNA-1
chr5_4 exon 3471604 3471660 3471604 ID=Msa0830400-mRNA-1:exon:1326;Parent=Msa0830400-mRNA-1
chr5_4 exon 3473390 3474636 3473390 ID=Msa0830400-mRNA-1:exon:1327;Parent=Msa0830400-mRNA-1
chr5_4 exon 3475089 3475330 3475089 ID=Msa0830400-mRNA-1:exon:1328;Parent=Msa0830400-mRNA-1
chr5_4 exon 3475678 3475781 3475678 ID=Msa0830400-mRNA-1:exon:1329;Parent=Msa0830400-mRNA-1
chr5_4 exon 3476589 3476720 3476589 ID=Msa0830400-mRNA-1:exon:1330;Parent=Msa0830400-mRNA-1
chr5_4 exon 3476868 3476966 3476868 ID=Msa0830400-mRNA-1:exon:1331;Parent=Msa0830400-mRNA-1
chr5_4 exon 3477074 3477530 3477074 ID=Msa0830400-mRNA-1:exon:1332;Parent=Msa0830400-mRNA-1
chr5_4 five_prime_UTR 3470835 3471145 3470835 ID=Msa0830400-mRNA-1:five_prime_utr;Parent=Msa0830400-mRNA-1
chr5_4 five_prime_UTR 3471604 3471660 3471604 ID=Msa0830400-mRNA-1:five_prime_utr;Parent=Msa0830400-mRNA-1
chr5_4 five_prime_UTR 3473390 3473536 3473390 ID=Msa0830400-mRNA-1:five_prime_utr;Parent=Msa0830400-mRNA-1
chr5_4 CDS 3473537 3474636 3473537 ID=Msa0830400-mRNA-1:cds;Parent=Msa0830400-mRNA-1
chr5_4 CDS 3475089 3475330 3475089 ID=Msa0830400-mRNA-1:cds;Parent=Msa0830400-mRNA-1
chr5_4 CDS 3475678 3475781 3475678 ID=Msa0830400-mRNA-1:cds;Parent=Msa0830400-mRNA-1
chr5_4 CDS 3476589 3476720 3476589 ID=Msa0830400-mRNA-1:cds;Parent=Msa0830400-mRNA-1
chr5_4 CDS 3476868 3476966 3476868 ID=Msa0830400-mRNA-1:cds;Parent=Msa0830400-mRNA-1
chr5_4 CDS 3477074 3477118 3477074 ID=Msa0830400-mRNA-1:cds;Parent=Msa0830400-mRNA-1
chr5_4 three_prime_UTR 3477119 3477530 3477119 ID=Msa0830400-mRNA-1:three_prime_utr;Parent=Msa0830400-mRNA-1
Gene Sequence

>Msa0830400

ATGGAGGCAAACAACGGAAAGGCATCGGATAGGGTTGTGCTTAATCTGAAGCGGAAACATGCTTCTCCACATGCTACATGTCCAAACGGAGATCTGCGACCAGTGTTACCTCGTTGGGCATCACTTGTATCTCCAAGAAACGAAGTTGTCAAACAGATGAAATTGAACAGTTACAAGAGCAAACCGACGAAATCAGAGACTCATATTGGACGGTCATTGGTTAGATATTATATGAATTATAAGAAGAGTGGACGCCCAGAACGTTTGATGGTCTATCAAAATGGTGAATGGAAGGACTTTCCTCAGAATGTTGTTGACTTGGTTAGGAAAGATTTTAATGCGAAGAAAGCAACTGTGGAGGTAGAGTTACATGGCCATCATCTTGTGCTGAATTTTTTGCACATGTATCAGATGAATTTGAAATCTGGTTTGCAGCGCCCTATTGCTTGGATTGACGAGACAGGGTGCTGCTTTTTCCCTGAAATTTATGCTGATTCTGATGAAGAGCCTTATGATCCCTGCAATCAGGATAGTGGAGAAAGTCAGGAATCATTGTTCCAAGATCCTAATGATATTAAATTACATTTAGAAATTGAAATAAATGGAGTCGATGCTTCCAAGTTGGGGGAGTGCACAGGGGAGTCCAATGTTATAGTTAAGCATACTCAAATTGATGCTAAACAAAATGATTTAGAAATTGAAGATAGTAGCAATAACATGGGAAATGGAAATGTTGGTGAAGCCGTTGAGCAAAATAAAAATATAGTTGGTAGTGCAGTTGTATATGGAAGGTTGGATTTGGATACTGTACAGAAGATGTTTCTTAAGGGAACTAGTAGTTTTGGTAGTGCTGACATAGTTGAGATTTACCCCTTCTCAAGTACAGTGATGCAATCACGATTGGAGCTGTTTGAGAAGCAAGCTGAAATTACGAAAAATTGTCGTGGGGATGCTAATGTTCGATATGCTTGGCTTGCTTCTTCTAAAGGAGAACTATCTACTATGATGAAGTGTGGGCTTGGTCATTGTGGAATATCTACATCTAAATGCACACATGGCTTTGGTGTTCATCTTGCAGCTGCTACCTTTCCTTTTGCCAGTGCTAGTCATTGTGATATTGACGAAAATGGGGTTCGACACTTGGTCTTTTGCCGTGTAATAATGGGGAATATGGAGCTTCTCCGTCCTGGCACTAGACAGTTTCGTCCCAGTAGTGGTGACTATGATAGTGGGGTGGATGACATCCACAATCCAAGATACTATATAGTATGGAATATGAATACGAACACCCACATCTGTCCAGAATATGTTGTTAGTTTCAAGGTCTCTTCTGCTGCTGAAGGCCTTCTTTTAGGAAGTAAGACTAAGAATAATATTTTTGGGGTTAACTCAGCTAGCCGAAGTCCTAAAATCTTGTCACGTTCAGAATCTTCTACAGTAGACACTGGAATAGCATCTGGTTCGCGTAGAGGTCCAACATCCCCTTCAATGCCTTTTCCTGTGCTTATTGATGCTCTCAGAAACAAGGTTTCTGCGAAGGATATGGAAGTTATCAATATGCATTATCTGCAATTCAGGGCAAAAAGGATGACTCGTGATGATTTTGCGAAGAAGTTGAGGTTGATTGTGCGAGATGATGCTCTCTTGAGAGCTACAATAGTTGGCCTTCAAAGCAAGATGCCCTCCCAACCATCTCGTGTGATCAAAATGGAACCTTGTTAA
Protein sequence

>Msa0830400

MEANNGKASDRVVLNLKRKHASPHATCPNGDLRPVLPRWASLVSPRNEVVKQMKLNSYKSKPTKSETHIGRSLVRYYMNYKKSGRPERLMVYQNGEWKDFPQNVVDLVRKDFNAKKATVEVELHGHHLVLNFLHMYQMNLKSGLQRPIAWIDETGCCFFPEIYADSDEEPYDPCNQDSGESQESLFQDPNDIKLHLEIEINGVDASKLGECTGESNVIVKHTQIDAKQNDLEIEDSSNNMGNGNVGEAVEQNKNIVGSAVVYGRLDLDTVQKMFLKGTSSFGSADIVEIYPFSSTVMQSRLELFEKQAEITKNCRGDANVRYAWLASSKGELSTMMKCGLGHCGISTSKCTHGFGVHLAAATFPFASASHCDIDENGVRHLVFCRVIMGNMELLRPGTRQFRPSSGDYDSGVDDIHNPRYYIVWNMNTNTHICPEYVVSFKVSSAAEGLLLGSKTKNNIFGVNSASRSPKILSRSESSTVDTGIASGSRRGPTSPSMPFPVLIDALRNKVSAKDMEVINMHYLQFRAKRMTRDDFAKKLRLIVRDDALLRATIVGLQSKMPSQPSRVIKMEPC*