Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711030 | XP_024639462.2 | 97.472 | 633 | 5 | 2 | 107 | 735 | 1 | 626 | 0.0 | 1276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711030 | sp|P93484|VSR1_PEA | 92.687 | 629 | 33 | 3 | 111 | 735 | 4 | 623 | 0.0 | 1211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711030 | A0A396HQY9 | 97.472 | 633 | 5 | 2 | 107 | 735 | 1 | 626 | 0.0 | 1276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0711030 | Msa1443740 | 0.916099 | 2.676330e-85 | -8.615850e-47 |
| Msa0581010 | Msa0711030 | 0.887678 | 1.155589e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711030 | MtrunA17_Chr5g0393731 | 97.472 | 633 | 5 | 2 | 107 | 735 | 1 | 626 | 0.0 | 1276 |
| Msa0711030 | MtrunA17_Chr1g0207291 | 87.013 | 616 | 70 | 3 | 123 | 735 | 24 | 632 | 0.0 | 1127 |
| Msa0711030 | MtrunA17_Chr8g0334591 | 65.348 | 632 | 206 | 5 | 104 | 732 | 2 | 623 | 0.0 | 885 |
| Msa0711030 | MtrunA17_Chr7g0244951 | 65.742 | 613 | 194 | 5 | 125 | 732 | 22 | 623 | 0.0 | 863 |
| Msa0711030 | MtrunA17_Chr2g0296671 | 62.764 | 615 | 217 | 4 | 113 | 726 | 8 | 611 | 0.0 | 802 |
| Msa0711030 | MtrunA17_Chr3g0133721 | 75.000 | 44 | 11 | 0 | 123 | 166 | 24 | 67 | 4.33e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711030 | AT2G14740.2 | 83.497 | 612 | 93 | 2 | 125 | 735 | 24 | 628 | 0.0 | 1093 |
| Msa0711030 | AT2G14740.1 | 83.497 | 612 | 93 | 2 | 125 | 735 | 24 | 628 | 0.0 | 1093 |
| Msa0711030 | AT2G14720.1 | 82.602 | 615 | 99 | 2 | 122 | 735 | 21 | 628 | 0.0 | 1086 |
| Msa0711030 | AT2G14720.2 | 82.602 | 615 | 99 | 2 | 122 | 735 | 21 | 628 | 0.0 | 1086 |
| Msa0711030 | AT3G52850.1 | 70.447 | 626 | 173 | 5 | 110 | 733 | 5 | 620 | 0.0 | 923 |
| Msa0711030 | AT2G30290.2 | 65.909 | 616 | 199 | 4 | 110 | 722 | 6 | 613 | 0.0 | 889 |
| Msa0711030 | AT2G30290.1 | 65.909 | 616 | 199 | 4 | 110 | 722 | 6 | 613 | 0.0 | 889 |
| Msa0711030 | AT4G20110.1 | 61.367 | 629 | 226 | 7 | 104 | 730 | 7 | 620 | 0.0 | 820 |
| Msa0711030 | AT1G30900.1 | 61.905 | 609 | 219 | 5 | 115 | 723 | 15 | 610 | 0.0 | 807 |
| Msa0711030 | AT4G20110.2 | 60.506 | 633 | 228 | 9 | 104 | 730 | 7 | 623 | 0.0 | 804 |
| Msa0711030 | AT2G34940.1 | 58.170 | 612 | 242 | 5 | 113 | 724 | 14 | 611 | 0.0 | 760 |
Find 197 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATACCCTCTGCTCTTAT+TGG | 0.161645 | 5_1:-2901086 | Msa0711030:CDS |
| AATCGCAAACCAAAATAATT+AGG | 0.172213 | 5_1:+2902030 | None:intergenic |
| TCGTGTACAAATATAGAATT+AGG | 0.184048 | 5_1:-2898395 | Msa0711030:CDS |
| GGTAGACTCCCTAATTATTT+TGG | 0.210373 | 5_1:-2902039 | Msa0711030:CDS |
| TTAGAAATTTAGAATGTTCT+TGG | 0.226695 | 5_1:-2897978 | Msa0711030:three_prime_UTR |
| CTTTGATGATTGACGTGATT+TGG | 0.258850 | 5_1:+2898146 | None:intergenic |
| CAGACAATATCGTGGTAAAT+TGG | 0.265668 | 5_1:-2900192 | Msa0711030:CDS |
| ATCTTGCTCTTCTTTCAAAA+TGG | 0.266286 | 5_1:+2900374 | None:intergenic |
| TCAGTACTGTTTATGTTAGT+TGG | 0.267130 | 5_1:-2901740 | Msa0711030:CDS |
| TGTTGCGTGAATTTGTATTT+AGG | 0.271625 | 5_1:-2897804 | Msa0711030:three_prime_UTR |
| GTTTCTTTGCTTTGAAGGTT+TGG | 0.273783 | 5_1:-2901226 | Msa0711030:CDS |
| CAACCCTTATTGTTATCTTT+AGG | 0.286744 | 5_1:+2901575 | None:intergenic |
| TGCCATTAGTGCTGGGGATA+TGG | 0.300176 | 5_1:-2901036 | Msa0711030:CDS |
| GAACATTCTAAATTTCTAAT+AGG | 0.301786 | 5_1:+2897982 | None:intergenic |
| ACGCACAATGTTGTAACTTA+TGG | 0.303838 | 5_1:-2897905 | Msa0711030:three_prime_UTR |
| GAACTTCTGCTTGGCTGTCC+AGG | 0.305137 | 5_1:+2898168 | None:intergenic |
| CAGTGTCCTACAGGGTTTAA+AGG | 0.310747 | 5_1:-2899309 | Msa0711030:CDS |
| CAGAAAATGCATGTCCGTTC+CGG | 0.315826 | 5_1:+2899505 | None:intergenic |
| TGAGGAGCCCTTGATTACTA+TGG | 0.317046 | 5_1:-2901156 | Msa0711030:CDS |
| GACAGTACCATGTTATATAA+TGG | 0.319024 | 5_1:+2900832 | None:intergenic |
| ATTGGCTTGGGTATGATTGC+TGG | 0.324545 | 5_1:-2898429 | Msa0711030:CDS |
| AGATTGTTTCTTTGCTTTGA+AGG | 0.325371 | 5_1:-2901231 | Msa0711030:CDS |
| TCATCTCTTCTTTCTTCTGA+TGG | 0.327260 | 5_1:+2901780 | None:intergenic |
| GTGTTTGCAGTCGGTGGACC+TGG | 0.328777 | 5_1:-2899567 | Msa0711030:intron |
| ATATTACAGTACTAAATAAA+AGG | 0.342493 | 5_1:+2898023 | None:intergenic |
| ACCGAGGGTTGGGTTGGGTT+TGG | 0.347569 | 5_1:+2902059 | None:intergenic |
| TTATCCTAAAGATAACAATA+AGG | 0.350659 | 5_1:-2901579 | Msa0711030:CDS |
| AAAAGGCTCAGAATTCTAAA+TGG | 0.356615 | 5_1:+2898040 | None:intergenic |
| ACAGTACCATGTTATATAAT+GGG | 0.356620 | 5_1:+2900833 | None:intergenic |
| GGCTATTTGTTCTGGATTTG+AGG | 0.358996 | 5_1:-2900150 | Msa0711030:CDS |
| CATCTCTTCTTTCTTCTGAT+GGG | 0.365657 | 5_1:+2901781 | None:intergenic |
| GACCATATCCCCAGCACTAA+TGG | 0.375726 | 5_1:+2901034 | None:intergenic |
| ATCGCAAACCAAAATAATTA+GGG | 0.382442 | 5_1:+2902031 | None:intergenic |
| TCCAGTCTCGTGGGATTTCA+TGG | 0.390836 | 5_1:-2898103 | Msa0711030:three_prime_UTR |
| TCTCCCATGGTTTATGCATT+GGG | 0.390836 | 5_1:+2900776 | None:intergenic |
| ATCTCCCATGGTTTATGCAT+TGG | 0.396833 | 5_1:+2900775 | None:intergenic |
| AACTTCTGCTTGGCTGTCCA+GGG | 0.402153 | 5_1:+2898169 | None:intergenic |
| GACAGTGCGATCGGTAACTT+TGG | 0.403999 | 5_1:-2901641 | Msa0711030:CDS |
| TATCCTAAAGATAACAATAA+GGG | 0.408259 | 5_1:-2901578 | Msa0711030:CDS |
| AGAAAATGCATGTCCGTTCC+GGG | 0.412062 | 5_1:+2899506 | None:intergenic |
| GGCAAGTGTTTACTTACCTT+TGG | 0.412782 | 5_1:-2900095 | Msa0711030:intron |
| TAGGGAGTCTACCGAGGGTT+GGG | 0.415616 | 5_1:+2902049 | None:intergenic |
| TCCACACTCATCGTTACTAT+TGG | 0.418802 | 5_1:+2900944 | None:intergenic |
| AGCAGATGAGACATCCTCTT+CGG | 0.422782 | 5_1:+2901127 | None:intergenic |
| TTTCAAGGTGGAATTATAGT+TGG | 0.424939 | 5_1:+2901823 | None:intergenic |
| AGCACCAGGTTTGGATTTGA+AGG | 0.425579 | 5_1:+2901529 | None:intergenic |
| CAGTACTGTTTATGTTAGTT+GGG | 0.425701 | 5_1:-2901739 | Msa0711030:CDS |
| GACTCGATCGGTTAATTTCA+AGG | 0.427106 | 5_1:+2901808 | None:intergenic |
| GACAACAAGAGTGGGCAATA+TGG | 0.427650 | 5_1:+2900220 | None:intergenic |
| TATTATTTCACTGCTCAGTT+GGG | 0.428197 | 5_1:-2897857 | Msa0711030:three_prime_UTR |
| TACAGGTAAAACTGCCAGTC+AGG | 0.431110 | 5_1:-2898487 | Msa0711030:intron |
| GACTTCAGCACAGGCTATGA+TGG | 0.431165 | 5_1:-2900729 | Msa0711030:CDS |
| GTTAAATGCCAGTGTCCTAC+AGG | 0.432639 | 5_1:-2899318 | Msa0711030:CDS |
| GGGTTGGGTTGGGTTTGGTT+TGG | 0.434206 | 5_1:+2902064 | None:intergenic |
| CTGAAGTCCTGCTCAGGATC+CGG | 0.438824 | 5_1:+2900744 | None:intergenic |
| GGTAGGAAGAGCACCAGGTT+TGG | 0.440524 | 5_1:+2901520 | None:intergenic |
| ATATTATTTCACTGCTCAGT+TGG | 0.441042 | 5_1:-2897858 | Msa0711030:three_prime_UTR |
| TTGGGTATGATTGCTGGAGG+GGG | 0.442632 | 5_1:-2898423 | Msa0711030:CDS |
| AGTCTACCGAGGGTTGGGTT+GGG | 0.445967 | 5_1:+2902054 | None:intergenic |
| CTTGGGTATGATTGCTGGAG+GGG | 0.451243 | 5_1:-2898424 | Msa0711030:CDS |
| CCGTTGCTCAAACAAACAGC+TGG | 0.457858 | 5_1:+2900116 | None:intergenic |
| GCAGATGAGACATCCTCTTC+GGG | 0.459853 | 5_1:+2901128 | None:intergenic |
| TTGAAGGATGCCATTAGTGC+TGG | 0.462509 | 5_1:-2901044 | Msa0711030:CDS |
| CGTGATTTGGAACTTCTGCT+TGG | 0.463555 | 5_1:+2898159 | None:intergenic |
| GTTTGGAATGCTCAGAAGGC+TGG | 0.467555 | 5_1:-2901209 | Msa0711030:CDS |
| TGTGAATGCCCCTTGGTTGA+TGG | 0.468992 | 5_1:-2899824 | Msa0711030:CDS |
| CCAGTCAGGCAAAATCCACT+TGG | 0.469198 | 5_1:-2898473 | Msa0711030:CDS |
| TGTATACAACTCACTTATAC+AGG | 0.470788 | 5_1:+2898607 | None:intergenic |
| CAAAAGAAACCGAAAAGCCT+TGG | 0.473973 | 5_1:-2900656 | Msa0711030:CDS |
| GCCATGAAATCCCACGAGAC+TGG | 0.474517 | 5_1:+2898102 | None:intergenic |
| TCATACTCGACACGATCATC+AGG | 0.477928 | 5_1:+2900975 | None:intergenic |
| TCAAATTAGATGCCCGATGA+AGG | 0.478586 | 5_1:-2900607 | Msa0711030:CDS |
| CAATACGGTGGTAGCATGGC+TGG | 0.479746 | 5_1:-2901611 | Msa0711030:CDS |
| ACAGTGCGATCGGTAACTTT+GGG | 0.480816 | 5_1:-2901640 | Msa0711030:CDS |
| GAGTCTACCGAGGGTTGGGT+TGG | 0.480846 | 5_1:+2902053 | None:intergenic |
| GGGTGTGTCCATAGTAATCA+AGG | 0.488151 | 5_1:+2901148 | None:intergenic |
| TGGTCAATGTTAATCTTGAC+TGG | 0.491505 | 5_1:-2901016 | Msa0711030:CDS |
| GAAGGTGAGATGTATTTCAC+TGG | 0.492479 | 5_1:-2897956 | Msa0711030:three_prime_UTR |
| CAAGGTGGAATTATAGTTGG+TGG | 0.493816 | 5_1:+2901826 | None:intergenic |
| GAAGGTTTGGAATGCTCAGA+AGG | 0.501562 | 5_1:-2901213 | Msa0711030:CDS |
| CGTGTACAAATATAGAATTA+GGG | 0.503332 | 5_1:-2898394 | Msa0711030:intron |
| TTCTGAAATCAGAGCAATCA+TGG | 0.503663 | 5_1:-2898204 | Msa0711030:CDS |
| AAAAGAAACCGAAAAGCCTT+GGG | 0.504812 | 5_1:-2900655 | Msa0711030:CDS |
| GGATGTGTGTTGCCATGCAT+TGG | 0.505041 | 5_1:-2897783 | Msa0711030:three_prime_UTR |
| GTAACTAACTTCCACGATCA+AGG | 0.505995 | 5_1:+2901489 | None:intergenic |
| GCTTGGGTATGATTGCTGGA+GGG | 0.509710 | 5_1:-2898425 | Msa0711030:CDS |
| AATGCCGTCATTAAATCTCT+TGG | 0.510279 | 5_1:-2900558 | Msa0711030:intron |
| GGCTTGGGTATGATTGCTGG+AGG | 0.513936 | 5_1:-2898426 | Msa0711030:CDS |
| CGCAAAGATTGACAAGTGCA+TGG | 0.517379 | 5_1:-2900424 | Msa0711030:CDS |
| TTGCGCTCCGGATCCTGAGC+AGG | 0.517442 | 5_1:-2900751 | Msa0711030:CDS |
| AAACAACGGTGGTTGTTGGC+AGG | 0.520508 | 5_1:-2899986 | Msa0711030:CDS |
| TTGTTGATCTTGCAACGCCC+AGG | 0.522495 | 5_1:+2899549 | None:intergenic |
| ATGTGGTTGTTGAAAATTTG+AGG | 0.522629 | 5_1:-2900701 | Msa0711030:CDS |
| AGAACAAATAGCCTTTAAAA+CGG | 0.523531 | 5_1:+2900160 | None:intergenic |
| TGTGCGTGGAAGATTACATA+TGG | 0.526737 | 5_1:+2897921 | None:intergenic |
| TCTTCCTTCAAATCCAAACC+TGG | 0.527152 | 5_1:-2901533 | Msa0711030:CDS |
| CCAGCTGTTTGTTTGAGCAA+CGG | 0.527751 | 5_1:-2900116 | Msa0711030:CDS |
| AACTTTGGGATTCCTCAATA+CGG | 0.529300 | 5_1:-2901626 | Msa0711030:CDS |
| CCGAAAAGCCTTGGGTGTGG+TGG | 0.530784 | 5_1:-2900647 | Msa0711030:CDS |
| TGAAGGATGCCATTAGTGCT+GGG | 0.532526 | 5_1:-2901043 | Msa0711030:CDS |
| GATGTCAACGGCGAGATTCG+TGG | 0.533817 | 5_1:-2901717 | Msa0711030:CDS |
| CCTGTGCTGAAGTCCTGCTC+AGG | 0.540657 | 5_1:+2900738 | None:intergenic |
| TGGAGATCTTCTGTATATCA+AGG | 0.544120 | 5_1:-2898639 | Msa0711030:CDS |
| TCCTCAATACGGTGGTAGCA+TGG | 0.544648 | 5_1:-2901615 | Msa0711030:CDS |
| AAATTTAGAATGTTCTTGGA+AGG | 0.544801 | 5_1:-2897974 | Msa0711030:three_prime_UTR |
| AAGGTGGAATTATAGTTGGT+GGG | 0.544803 | 5_1:+2901827 | None:intergenic |
| ACTCACTTATACAGGTATCA+TGG | 0.546171 | 5_1:+2898615 | None:intergenic |
| TATCGTGGTAAATTGGAGAA+AGG | 0.553139 | 5_1:-2900185 | Msa0711030:CDS |
| GAGGATGTTGGCATGATGCC+CGG | 0.553226 | 5_1:-2899524 | Msa0711030:CDS |
| GCCATGCTACCACCGTATTG+AGG | 0.554564 | 5_1:+2901614 | None:intergenic |
| ACCAAACCCAACCCAACCCT+CGG | 0.555791 | 5_1:-2902060 | Msa0711030:CDS |
| GGATTTCATGGCGTGTAGCA+TGG | 0.556572 | 5_1:-2898091 | Msa0711030:three_prime_UTR |
| GGTGGAGAAGAACAGCTTGT+CGG | 0.558947 | 5_1:-2901696 | Msa0711030:CDS |
| TGACAAACAACGGTGGTTGT+TGG | 0.559077 | 5_1:-2899990 | Msa0711030:CDS |
| CCTGAGCAGGACTTCAGCAC+AGG | 0.560984 | 5_1:-2900738 | Msa0711030:CDS |
| ACTCGTTGCCGATGATATTG+AGG | 0.563097 | 5_1:-2901174 | Msa0711030:CDS |
| CTGTTATTGACAACAAGAGT+GGG | 0.565852 | 5_1:+2900212 | None:intergenic |
| AGCTAATATCACTGCATGCA+AGG | 0.568003 | 5_1:-2899956 | Msa0711030:intron |
| TTAGGGAGTCTACCGAGGGT+TGG | 0.568880 | 5_1:+2902048 | None:intergenic |
| CCTACAGGGTTTAAAGGTGA+TGG | 0.569016 | 5_1:-2899303 | Msa0711030:CDS |
| ACTTCACCTGATAAAATCAA+AGG | 0.570340 | 5_1:-2901671 | Msa0711030:CDS |
| GCAGCACAGATCTTAGAGAA+AGG | 0.570785 | 5_1:-2900876 | Msa0711030:CDS |
| TGTTTGCAGTCGGTGGACCT+GGG | 0.574779 | 5_1:-2899566 | Msa0711030:intron |
| ACTTCAGCACAGGCTATGAT+GGG | 0.575024 | 5_1:-2900728 | Msa0711030:CDS |
| AGATCAACAATGGAGGATGT+TGG | 0.577792 | 5_1:-2899536 | Msa0711030:CDS |
| GTTGATGGTGTGCAATTCAA+AGG | 0.579556 | 5_1:-2899809 | Msa0711030:CDS |
| CGAAAAGCCTTGGGTGTGGT+GGG | 0.579998 | 5_1:-2900646 | Msa0711030:CDS |
| CAAGGGCTCCTCAATATCAT+CGG | 0.583903 | 5_1:+2901166 | None:intergenic |
| CCATGGGAGATATTGCGCTC+CGG | 0.584021 | 5_1:-2900763 | Msa0711030:CDS |
| TTGTTGTGTAAACAGGATGA+TGG | 0.587216 | 5_1:-2899345 | Msa0711030:intron |
| ACTTCTGCTTGGCTGTCCAG+GGG | 0.591243 | 5_1:+2898170 | None:intergenic |
| GAATTGCACACCATCAACCA+AGG | 0.591314 | 5_1:+2899814 | None:intergenic |
| CTTTAAACCCTGTAGGACAC+TGG | 0.592362 | 5_1:+2899310 | None:intergenic |
| ACCATCCTTCTCCTTGATCG+TGG | 0.593790 | 5_1:-2901500 | Msa0711030:CDS |
| GGAAAACATGACAGTGCGAT+CGG | 0.595812 | 5_1:-2901650 | Msa0711030:CDS |
| GCGAGTATGTGAATGCCCCT+TGG | 0.597573 | 5_1:-2899831 | Msa0711030:CDS |
| AGCTATGACTGCAGTTGCAG+TGG | 0.598430 | 5_1:-2898659 | Msa0711030:CDS |
| CATGGCACAATATATGCCCC+TGG | 0.598457 | 5_1:-2898186 | Msa0711030:CDS |
| CGTTGCTCAAACAAACAGCT+GGG | 0.598548 | 5_1:+2900117 | None:intergenic |
| TATGTTAGTTGGGATGTCAA+CGG | 0.599268 | 5_1:-2901729 | Msa0711030:CDS |
| TCAGAATTCTAAATGGCTCA+AGG | 0.599721 | 5_1:+2898047 | None:intergenic |
| CCGGAGCGCAATATCTCCCA+TGG | 0.600947 | 5_1:+2900763 | None:intergenic |
| ATCTGCCAGGATACATTCCG+TGG | 0.601733 | 5_1:-2899854 | Msa0711030:intron |
| TTTAGCGTGGTGGAGGAGCA+AGG | 0.603264 | 5_1:-2902109 | None:intergenic |
| AAACCGAAAAGCCTTGGGTG+TGG | 0.605855 | 5_1:-2900650 | Msa0711030:CDS |
| AACTTCCACGATCAAGGAGA+AGG | 0.607585 | 5_1:+2901495 | None:intergenic |
| GACGGTTATACAACTTGTGA+AGG | 0.609305 | 5_1:-2899785 | Msa0711030:intron |
| AATGAAGAAGTACCAATGCA+TGG | 0.611584 | 5_1:+2897771 | None:intergenic |
| CGATCAAGGAGAAGGATGGT+AGG | 0.611973 | 5_1:+2901503 | None:intergenic |
| GCAAAGATTGACAAGTGCAT+GGG | 0.612158 | 5_1:-2900423 | Msa0711030:CDS |
| TACTATGGACACACCCGAAG+AGG | 0.615995 | 5_1:-2901141 | Msa0711030:CDS |
| AATAATTAGGGAGTCTACCG+AGG | 0.619714 | 5_1:+2902043 | None:intergenic |
| AGGATGGTAGGAAGAGCACC+AGG | 0.624048 | 5_1:+2901515 | None:intergenic |
| CAGTCAGGCAAAATCCACTT+GGG | 0.624354 | 5_1:-2898472 | Msa0711030:CDS |
| AACGAGTGCTTGACAAACAA+CGG | 0.624681 | 5_1:-2900000 | Msa0711030:CDS |
| AATTCTAAATGGCTCAAGGA+GGG | 0.625106 | 5_1:+2898051 | None:intergenic |
| AATTGCACACCATCAACCAA+GGG | 0.625572 | 5_1:+2899815 | None:intergenic |
| TCTGTTATTGACAACAAGAG+TGG | 0.627589 | 5_1:+2900211 | None:intergenic |
| AAGTCCCAATGCATAAACCA+TGG | 0.629265 | 5_1:-2900780 | Msa0711030:CDS |
| TCGACACGATCATCAGGATG+AGG | 0.631218 | 5_1:+2900981 | None:intergenic |
| CATGGCGTGTAGCATGGATG+TGG | 0.633190 | 5_1:-2898085 | Msa0711030:three_prime_UTR |
| TCAGAAGGCTGGAGCTTCTG+CGG | 0.634092 | 5_1:-2901198 | Msa0711030:CDS |
| TGTTAATCTTGACTGGAGAG+AGG | 0.634616 | 5_1:-2901009 | Msa0711030:CDS |
| GGGCGTTGCAAGATCAACAA+TGG | 0.636889 | 5_1:-2899546 | Msa0711030:CDS |
| GGCATTCACATACTCGCCCA+CGG | 0.638497 | 5_1:+2899837 | None:intergenic |
| GGTGTGCAATTCAAAGGAGA+CGG | 0.638839 | 5_1:-2899803 | Msa0711030:CDS |
| GTCAATAACAGACAATATCG+TGG | 0.638925 | 5_1:-2900200 | Msa0711030:CDS |
| ACATAGTCCCACCACACCCA+AGG | 0.638979 | 5_1:+2900639 | None:intergenic |
| AGTCCCAATGCATAAACCAT+GGG | 0.639703 | 5_1:-2900779 | Msa0711030:CDS |
| TGTTGGCATGATGCCCGGAA+CGG | 0.640813 | 5_1:-2899519 | Msa0711030:CDS |
| CAGTACCATGTTATATAATG+GGG | 0.643079 | 5_1:+2900834 | None:intergenic |
| TTACACCCCATTATATAACA+TGG | 0.646628 | 5_1:-2900839 | Msa0711030:CDS |
| CTGATGGGTCTCGACTCGAT+CGG | 0.649312 | 5_1:+2901796 | None:intergenic |
| TCCACGATCAAGGAGAAGGA+TGG | 0.649403 | 5_1:+2901499 | None:intergenic |
| TTAAATGCCAGTGTCCTACA+GGG | 0.651425 | 5_1:-2899317 | Msa0711030:CDS |
| GAAGGATGCCATTAGTGCTG+GGG | 0.652649 | 5_1:-2901042 | Msa0711030:CDS |
| GCACAGATCTTAGAGAAAGG+AGG | 0.654803 | 5_1:-2900873 | Msa0711030:CDS |
| CCATCACCTTTAAACCCTGT+AGG | 0.658035 | 5_1:+2899303 | None:intergenic |
| CGTTGCAAGATCAACAATGG+AGG | 0.658097 | 5_1:-2899543 | Msa0711030:CDS |
| TAATTCTATATTTGTACACG+AGG | 0.659523 | 5_1:+2898397 | None:intergenic |
| GGTGTGTCCATAGTAATCAA+GGG | 0.660123 | 5_1:+2901149 | None:intergenic |
| ATAAGTTACAACATTGTGCG+TGG | 0.662906 | 5_1:+2897907 | None:intergenic |
| GAATTCTAAATGGCTCAAGG+AGG | 0.671781 | 5_1:+2898050 | None:intergenic |
| ATAATTAGGGAGTCTACCGA+GGG | 0.672522 | 5_1:+2902044 | None:intergenic |
| ACCAATAGTAACGATGAGTG+TGG | 0.674003 | 5_1:-2900945 | Msa0711030:CDS |
| TTACTCAATGTAAACGCGTG+AGG | 0.679088 | 5_1:+2900810 | None:intergenic |
| TCTGCCAGGATACATTCCGT+GGG | 0.680496 | 5_1:-2899853 | Msa0711030:intron |
| TTGTGTAAACAGGATGATGG+AGG | 0.686610 | 5_1:-2899342 | Msa0711030:intron |
| TTTGGGATTCCTCAATACGG+TGG | 0.689306 | 5_1:-2901623 | Msa0711030:CDS |
| CTGACCAAGAGATTTAATGA+CGG | 0.696138 | 5_1:+2900554 | None:intergenic |
| GTCAACGGCGAGATTCGTGG+TGG | 0.699652 | 5_1:-2901714 | Msa0711030:CDS |
| AGGCTATGATGGGAAAGATG+TGG | 0.711715 | 5_1:-2900718 | Msa0711030:CDS |
| ATCGTGTCGAGTATGAGTTG+TGG | 0.711953 | 5_1:-2900968 | Msa0711030:CDS |
| TAGATTGGGAAGGGATCACG+CGG | 0.718440 | 5_1:-2900251 | Msa0711030:CDS |
| ATTGCACACCATCAACCAAG+GGG | 0.740525 | 5_1:+2899816 | None:intergenic |
| TCGATCGGTTAATTTCAAGG+TGG | 0.742070 | 5_1:+2901811 | None:intergenic |
| GAGTGCTTGACAAACAACGG+TGG | 0.772061 | 5_1:-2899997 | Msa0711030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTAACTATTAAATTTAT+TGG | - | chr5_1:2900382-2900401 | Msa0711030:CDS | 10.0% |
| !! | AAAATAAATTGAATAAAGTT+TGG | + | chr5_1:2900408-2900427 | None:intergenic | 10.0% |
| !! | AAATGAAATAATAAATTTGT+TGG | - | chr5_1:2901606-2901625 | Msa0711030:CDS | 10.0% |
| !! | AGATAAACATAATAAGAATA+TGG | + | chr5_1:2899397-2899416 | None:intergenic | 15.0% |
| !! | TAAACTAAAAGCAATAATAA+AGG | + | chr5_1:2899520-2899539 | None:intergenic | 15.0% |
| !!! | TAAAATGTTTGTAGTTTTAT+TGG | - | chr5_1:2900448-2900467 | Msa0711030:intron | 15.0% |
| !! | AAAATATTAAAAACAGAATG+AGG | + | chr5_1:2900701-2900720 | None:intergenic | 15.0% |
| !! | AATATTATTAATAGAATCGA+TGG | - | chr5_1:2900782-2900801 | Msa0711030:CDS | 15.0% |
| !!! | TTTTCCACTATAAAAAATTT+TGG | - | chr5_1:2901067-2901086 | Msa0711030:CDS | 15.0% |
| !!! | AATTCCAAAATTTTTTATAG+TGG | + | chr5_1:2901074-2901093 | None:intergenic | 15.0% |
| !!! | TGCTTTAGAAATTTATTAAT+TGG | + | chr5_1:2901530-2901549 | None:intergenic | 15.0% |
| !! | ATATTACAGTACTAAATAAA+AGG | + | chr5_1:2901835-2901854 | None:intergenic | 15.0% |
| !! | TTATCCTAAAGATAACAATA+AGG | - | chr5_1:2898276-2898295 | Msa0711030:intron | 20.0% |
| !! | TATCCTAAAGATAACAATAA+GGG | - | chr5_1:2898277-2898296 | Msa0711030:intron | 20.0% |
| !! | TATTTGTGAGATACTAAATT+GGG | + | chr5_1:2898478-2898497 | None:intergenic | 20.0% |
| !! | TTATTTGTGAGATACTAAAT+TGG | + | chr5_1:2898479-2898498 | None:intergenic | 20.0% |
| !!! | TGTAGATTTTTTTATGAAAC+TGG | - | chr5_1:2899576-2899595 | Msa0711030:intron | 20.0% |
| !!! | ATTTAACATTTTAAGAACGT+GGG | + | chr5_1:2899981-2900000 | None:intergenic | 20.0% |
| !!! | TATTTAACATTTTAAGAACG+TGG | + | chr5_1:2899982-2900001 | None:intergenic | 20.0% |
| !! | AGTAATTCAGTTTCTAATTT+GGG | + | chr5_1:2900483-2900502 | None:intergenic | 20.0% |
| !! | TAGTAATTCAGTTTCTAATT+TGG | + | chr5_1:2900484-2900503 | None:intergenic | 20.0% |
| !!! | TGAAATAATAAATTTGTTGG+TGG | - | chr5_1:2901609-2901628 | Msa0711030:CDS | 20.0% |
| !! | GAACATTCTAAATTTCTAAT+AGG | + | chr5_1:2901876-2901895 | None:intergenic | 20.0% |
| !!! | TTAGAAATTTAGAATGTTCT+TGG | - | chr5_1:2901877-2901896 | Msa0711030:CDS | 20.0% |
| ! | ATCGCAAACCAAAATAATTA+GGG | + | chr5_1:2897827-2897846 | None:intergenic | 25.0% |
| ! | AATCGCAAACCAAAATAATT+AGG | + | chr5_1:2897828-2897847 | None:intergenic | 25.0% |
| !!! | TGTTTTCCTTTGATTTTATC+AGG | + | chr5_1:2898193-2898212 | None:intergenic | 25.0% |
| ! | AATGAAAGTAACAAGAAAGA+AGG | + | chr5_1:2898401-2898420 | None:intergenic | 25.0% |
| ! | AAAAATAGCATGGAGTAATT+TGG | + | chr5_1:2898508-2898527 | None:intergenic | 25.0% |
| ! | TCTACAGTATAAAAATAGCA+TGG | + | chr5_1:2898518-2898537 | None:intergenic | 25.0% |
| ! | ATTATAACATAGGGACTAAA+GGG | - | chr5_1:2898552-2898571 | Msa0711030:intron | 25.0% |
| !!! | TATGTTGATTGAGTTTTTGA+AGG | - | chr5_1:2898945-2898964 | Msa0711030:intron | 25.0% |
| ! | ACAGTACCATGTTATATAAT+GGG | + | chr5_1:2899025-2899044 | None:intergenic | 25.0% |
| ! | TTCTTATTATGTTTATCTGC+AGG | - | chr5_1:2899399-2899418 | Msa0711030:intron | 25.0% |
| !! | CAAAATGGAATTTTCAGTAT+CGG | + | chr5_1:2899469-2899488 | None:intergenic | 25.0% |
| ! | AATAATAAAGGACGTTACTT+GGG | + | chr5_1:2899508-2899527 | None:intergenic | 25.0% |
| !! | AGAACAAATAGCCTTTAAAA+CGG | + | chr5_1:2899698-2899717 | None:intergenic | 25.0% |
| ! | AAACAGACTTTCTAATAACA+CGG | - | chr5_1:2899937-2899956 | Msa0711030:intron | 25.0% |
| ! | TAAAATGTTAAATATCTGCC+AGG | - | chr5_1:2899988-2900007 | Msa0711030:CDS | 25.0% |
| !! | ACGCAAAATTGATTTCTAAA+GGG | - | chr5_1:2900122-2900141 | Msa0711030:CDS | 25.0% |
| ! | TAATTCTATATTTGTACACG+AGG | + | chr5_1:2901461-2901480 | None:intergenic | 25.0% |
| ! | TCGTGTACAAATATAGAATT+AGG | - | chr5_1:2901460-2901479 | Msa0711030:intron | 25.0% |
| ! | CGTGTACAAATATAGAATTA+GGG | - | chr5_1:2901461-2901480 | Msa0711030:intron | 25.0% |
| !! | AAATTTAGAATGTTCTTGGA+AGG | - | chr5_1:2901881-2901900 | Msa0711030:CDS | 25.0% |
| !!! | TGCTTTTTTCACTTTTATTC+TGG | - | chr5_1:2902027-2902046 | Msa0711030:CDS | 25.0% |
| TTTCAAGGTGGAATTATAGT+TGG | + | chr5_1:2898035-2898054 | None:intergenic | 30.0% | |
| ! | AAGAAGAGATGAAGTTTTTG+TGG | - | chr5_1:2898086-2898105 | Msa0711030:three_prime_UTR | 30.0% |
| TCAGTACTGTTTATGTTAGT+TGG | - | chr5_1:2898115-2898134 | Msa0711030:three_prime_UTR | 30.0% | |
| CAGTACTGTTTATGTTAGTT+GGG | - | chr5_1:2898116-2898135 | Msa0711030:three_prime_UTR | 30.0% | |
| ACTTCACCTGATAAAATCAA+AGG | - | chr5_1:2898184-2898203 | Msa0711030:CDS | 30.0% | |
| CAACCCTTATTGTTATCTTT+AGG | + | chr5_1:2898283-2898302 | None:intergenic | 30.0% | |
| ATTAAAGTAGCGAAGAATCA+AGG | + | chr5_1:2898442-2898461 | None:intergenic | 30.0% | |
| TTAGTCCCTCATTATAACAT+AGG | - | chr5_1:2898542-2898561 | Msa0711030:intron | 30.0% | |
| TAGTCCCTCATTATAACATA+GGG | - | chr5_1:2898543-2898562 | Msa0711030:intron | 30.0% | |
| TAGTCCCTATGTTATAATGA+GGG | + | chr5_1:2898550-2898569 | None:intergenic | 30.0% | |
| TTAGTCCCTATGTTATAATG+AGG | + | chr5_1:2898551-2898570 | None:intergenic | 30.0% | |
| CATTATAACATAGGGACTAA+AGG | - | chr5_1:2898551-2898570 | Msa0711030:intron | 30.0% | |
| ! | AGATTGTTTCTTTGCTTTGA+AGG | - | chr5_1:2898624-2898643 | Msa0711030:CDS | 30.0% |
| ! | GCTCTTATTGGAAAAACTTT+TGG | - | chr5_1:2898781-2898800 | Msa0711030:intron | 30.0% |
| !! | TGAGTTTTTGAAGGATTTCA+AGG | - | chr5_1:2898954-2898973 | Msa0711030:intron | 30.0% |
| !! | GAGTTTTTGAAGGATTTCAA+GGG | - | chr5_1:2898955-2898974 | Msa0711030:intron | 30.0% |
| TTACACCCCATTATATAACA+TGG | - | chr5_1:2899016-2899035 | Msa0711030:intron | 30.0% | |
| CAGTACCATGTTATATAATG+GGG | + | chr5_1:2899024-2899043 | None:intergenic | 30.0% | |
| GACAGTACCATGTTATATAA+TGG | + | chr5_1:2899026-2899045 | None:intergenic | 30.0% | |
| ATGTGGTTGTTGAAAATTTG+AGG | - | chr5_1:2899154-2899173 | Msa0711030:intron | 30.0% | |
| !!! | TTGTACTTTTTCTCCTTCAT+CGG | + | chr5_1:2899264-2899283 | None:intergenic | 30.0% |
| ATCTTGCTCTTCTTTCAAAA+TGG | + | chr5_1:2899484-2899503 | None:intergenic | 30.0% | |
| CAATAATAAAGGACGTTACT+TGG | + | chr5_1:2899509-2899528 | None:intergenic | 30.0% | |
| !!! | ATGAAACTGGTTTTGTAGAT+TGG | - | chr5_1:2899589-2899608 | Msa0711030:intron | 30.0% |
| !!! | TGAAACTGGTTTTGTAGATT+GGG | - | chr5_1:2899590-2899609 | Msa0711030:intron | 30.0% |
| !!! | GTTTTAAAGGCTATTTGTTC+TGG | - | chr5_1:2899697-2899716 | Msa0711030:intron | 30.0% |
| TTTACTTACCTTTGGTACAA+GGG | - | chr5_1:2899768-2899787 | Msa0711030:intron | 30.0% | |
| ! | AATCAATTTTGCGTGCATAA+AGG | + | chr5_1:2900116-2900135 | None:intergenic | 30.0% |
| ! | CACGCAAAATTGATTTCTAA+AGG | - | chr5_1:2900121-2900140 | Msa0711030:CDS | 30.0% |
| ACACATATTGTTGTGTAAAC+AGG | - | chr5_1:2900503-2900522 | Msa0711030:intron | 30.0% | |
| GATGGTGTAAAAAATTGTGA+AGG | - | chr5_1:2900570-2900589 | Msa0711030:CDS | 30.0% | |
| TGTAAAAAATTGTGAAGGTG+AGG | - | chr5_1:2900575-2900594 | Msa0711030:CDS | 30.0% | |
| GTAAAAAATTGTGAAGGTGA+GGG | - | chr5_1:2900576-2900595 | Msa0711030:CDS | 30.0% | |
| !! | ATATTTTGGACAAAAGAGAG+AGG | + | chr5_1:2900867-2900886 | None:intergenic | 30.0% |
| ! | AGAGAGGAGATAACATATTT+TGG | + | chr5_1:2900881-2900900 | None:intergenic | 30.0% |
| ! | TATAGTGGAAAACATTCACT+AGG | + | chr5_1:2901059-2901078 | None:intergenic | 30.0% |
| TGTATACAACTCACTTATAC+AGG | + | chr5_1:2901251-2901270 | None:intergenic | 30.0% | |
| AAACAAGAACGTGTAAATGT+AGG | + | chr5_1:2901293-2901312 | None:intergenic | 30.0% | |
| TTACCTGTAGATTATACAGT+AGG | + | chr5_1:2901357-2901376 | None:intergenic | 30.0% | |
| !!! | GCTTTTTGGGTTATTTTGAT+TGG | - | chr5_1:2901408-2901427 | Msa0711030:intron | 30.0% |
| !! | TCTCAGTTTGGTGATTTTAT+TGG | - | chr5_1:2901501-2901520 | Msa0711030:CDS | 30.0% |
| !! | CTCAGTTTGGTGATTTTATT+GGG | - | chr5_1:2901502-2901521 | Msa0711030:CDS | 30.0% |
| AAAAGGCTCAGAATTCTAAA+TGG | + | chr5_1:2901818-2901837 | None:intergenic | 30.0% | |
| ATATTATTTCACTGCTCAGT+TGG | - | chr5_1:2901997-2902016 | Msa0711030:intron | 30.0% | |
| TATTATTTCACTGCTCAGTT+GGG | - | chr5_1:2901998-2902017 | Msa0711030:intron | 30.0% | |
| TGTTGCGTGAATTTGTATTT+AGG | - | chr5_1:2902051-2902070 | Msa0711030:CDS | 30.0% | |
| ! | GGTAGACTCCCTAATTATTT+TGG | - | chr5_1:2897816-2897835 | Msa0711030:three_prime_UTR | 35.0% |
| AAGGTGGAATTATAGTTGGT+GGG | + | chr5_1:2898031-2898050 | None:intergenic | 35.0% | |
| CATCTCTTCTTTCTTCTGAT+GGG | + | chr5_1:2898077-2898096 | None:intergenic | 35.0% | |
| TCATCTCTTCTTTCTTCTGA+TGG | + | chr5_1:2898078-2898097 | None:intergenic | 35.0% | |
| ! | AAGAGATGAAGTTTTTGTGG+CGG | - | chr5_1:2898089-2898108 | Msa0711030:three_prime_UTR | 35.0% |
| TATGTTAGTTGGGATGTCAA+CGG | - | chr5_1:2898126-2898145 | Msa0711030:exon | 35.0% | |
| !! | AACTTTGGGATTCCTCAATA+CGG | - | chr5_1:2898229-2898248 | Msa0711030:intron | 35.0% |
| AGATACTAAATTGGGCATCT+AGG | + | chr5_1:2898470-2898489 | None:intergenic | 35.0% | |
| AGCAAAGAAACAATCTGCAA+AGG | + | chr5_1:2898620-2898639 | None:intergenic | 35.0% | |
| !! | GTTTCTTTGCTTTGAAGGTT+TGG | - | chr5_1:2898629-2898648 | Msa0711030:CDS | 35.0% |
| ! | GTTTTTCCAATAAGAGCAGA+GGG | + | chr5_1:2898778-2898797 | None:intergenic | 35.0% |
| ! | AGTTTTTCCAATAAGAGCAG+AGG | + | chr5_1:2898779-2898798 | None:intergenic | 35.0% |
| ! | AACTTTTGGTCAGAAGTTGA+AGG | - | chr5_1:2898795-2898814 | Msa0711030:intron | 35.0% |
| TGGTCAATGTTAATCTTGAC+TGG | - | chr5_1:2898839-2898858 | Msa0711030:intron | 35.0% | |
| AAAAGAAACCGAAAAGCCTT+GGG | - | chr5_1:2899200-2899219 | Msa0711030:intron | 35.0% | |
| !!! | TGTACTTTTTCTCCTTCATC+GGG | + | chr5_1:2899263-2899282 | None:intergenic | 35.0% |
| ! | GAAGGAGAAAAAGTACAACA+AGG | - | chr5_1:2899266-2899285 | Msa0711030:intron | 35.0% |
| AATGCCGTCATTAAATCTCT+TGG | - | chr5_1:2899297-2899316 | Msa0711030:CDS | 35.0% | |
| CTGACCAAGAGATTTAATGA+CGG | + | chr5_1:2899304-2899323 | None:intergenic | 35.0% | |
| ! | TTATGTTTTCTTGCAGTCGT+TGG | - | chr5_1:2899341-2899360 | Msa0711030:intron | 35.0% |
| CTGTTATTGACAACAAGAGT+GGG | + | chr5_1:2899646-2899665 | None:intergenic | 35.0% | |
| TCTGTTATTGACAACAAGAG+TGG | + | chr5_1:2899647-2899666 | None:intergenic | 35.0% | |
| GTCAATAACAGACAATATCG+TGG | - | chr5_1:2899655-2899674 | Msa0711030:intron | 35.0% | |
| CAGACAATATCGTGGTAAAT+TGG | - | chr5_1:2899663-2899682 | Msa0711030:intron | 35.0% | |
| TATCGTGGTAAATTGGAGAA+AGG | - | chr5_1:2899670-2899689 | Msa0711030:intron | 35.0% | |
| GTTTACTTACCTTTGGTACA+AGG | - | chr5_1:2899767-2899786 | Msa0711030:intron | 35.0% | |
| ACATATTTCCCTTGTACCAA+AGG | + | chr5_1:2899779-2899798 | None:intergenic | 35.0% | |
| TACAACTTGTGAAGGTGAAA+TGG | - | chr5_1:2900078-2900097 | Msa0711030:intron | 35.0% | |
| AGAAGTGAAGGCAATAAACA+TGG | + | chr5_1:2900163-2900182 | None:intergenic | 35.0% | |
| ! | ACATGCATTTTCTGCTTGTT+TGG | - | chr5_1:2900359-2900378 | Msa0711030:intron | 35.0% |
| TTGTTGTGTAAACAGGATGA+TGG | - | chr5_1:2900510-2900529 | Msa0711030:intron | 35.0% | |
| CAGAATGAGGATTCTATTCA+TGG | + | chr5_1:2900688-2900707 | None:intergenic | 35.0% | |
| TAGTACTTCATGCTTCAATC+TGG | - | chr5_1:2900827-2900846 | Msa0711030:CDS | 35.0% | |
| AGTACTTCATGCTTCAATCT+GGG | - | chr5_1:2900828-2900847 | Msa0711030:CDS | 35.0% | |
| AATCTCAGCAAGTGAAACAT+TGG | - | chr5_1:2900929-2900948 | Msa0711030:CDS | 35.0% | |
| !! | GAAACATTGGCTTCTATACT+TGG | - | chr5_1:2900942-2900961 | Msa0711030:CDS | 35.0% |
| !! | TGTTTTTGCAGCTACATTCA+GGG | + | chr5_1:2901168-2901187 | None:intergenic | 35.0% |
| AATGTAGCTGCAAAAACACT+TGG | - | chr5_1:2901170-2901189 | Msa0711030:CDS | 35.0% | |
| ATGTAGCTGCAAAAACACTT+GGG | - | chr5_1:2901171-2901190 | Msa0711030:CDS | 35.0% | |
| TGGAGATCTTCTGTATATCA+AGG | - | chr5_1:2901216-2901235 | Msa0711030:CDS | 35.0% | |
| ACTCACTTATACAGGTATCA+TGG | + | chr5_1:2901243-2901262 | None:intergenic | 35.0% | |
| TCTCCTACTGTATAATCTAC+AGG | - | chr5_1:2901351-2901370 | Msa0711030:intron | 35.0% | |
| !!! | TTGGGTTATTTTGATTGGCT+TGG | - | chr5_1:2901413-2901432 | Msa0711030:intron | 35.0% |
| !!! | TGGGTTATTTTGATTGGCTT+GGG | - | chr5_1:2901414-2901433 | Msa0711030:intron | 35.0% |
| CAACAAAGTAAGCAAGTCAT+GGG | + | chr5_1:2901571-2901590 | None:intergenic | 35.0% | |
| ACAACAAAGTAAGCAAGTCA+TGG | + | chr5_1:2901572-2901591 | None:intergenic | 35.0% | |
| !! | TTCTGAAATCAGAGCAATCA+TGG | - | chr5_1:2901651-2901670 | Msa0711030:CDS | 35.0% |
| ! | CTTTGATGATTGACGTGATT+TGG | + | chr5_1:2901712-2901731 | None:intergenic | 35.0% |
| AATTCTAAATGGCTCAAGGA+GGG | + | chr5_1:2901807-2901826 | None:intergenic | 35.0% | |
| TCAGAATTCTAAATGGCTCA+AGG | + | chr5_1:2901811-2901830 | None:intergenic | 35.0% | |
| ATAAGTTACAACATTGTGCG+TGG | + | chr5_1:2901951-2901970 | None:intergenic | 35.0% | |
| ACGCACAATGTTGTAACTTA+TGG | - | chr5_1:2901950-2901969 | Msa0711030:CDS | 35.0% | |
| !! | AATGAAGAAGTACCAATGCA+TGG | + | chr5_1:2902087-2902106 | None:intergenic | 35.0% |
| ATAATTAGGGAGTCTACCGA+GGG | + | chr5_1:2897814-2897833 | None:intergenic | 40.0% | |
| AATAATTAGGGAGTCTACCG+AGG | + | chr5_1:2897815-2897834 | None:intergenic | 40.0% | |
| CAAGGTGGAATTATAGTTGG+TGG | + | chr5_1:2898032-2898051 | None:intergenic | 40.0% | |
| TCGATCGGTTAATTTCAAGG+TGG | + | chr5_1:2898047-2898066 | None:intergenic | 40.0% | |
| GACTCGATCGGTTAATTTCA+AGG | + | chr5_1:2898050-2898069 | None:intergenic | 40.0% | |
| TCTTCCTTCAAATCCAAACC+TGG | - | chr5_1:2898322-2898341 | Msa0711030:intron | 40.0% | |
| GTAACTAACTTCCACGATCA+AGG | + | chr5_1:2898369-2898388 | None:intergenic | 40.0% | |
| AGGGACTAAAGGGATCAAAA+TGG | - | chr5_1:2898562-2898581 | Msa0711030:intron | 40.0% | |
| GGGACTAAAGGGATCAAAAT+GGG | - | chr5_1:2898563-2898582 | Msa0711030:intron | 40.0% | |
| GGTGTGTCCATAGTAATCAA+GGG | + | chr5_1:2898709-2898728 | None:intergenic | 40.0% | |
| ACAATACCCTCTGCTCTTAT+TGG | - | chr5_1:2898769-2898788 | Msa0711030:intron | 40.0% | |
| TGTTAATCTTGACTGGAGAG+AGG | - | chr5_1:2898846-2898865 | Msa0711030:intron | 40.0% | |
| ACCAATAGTAACGATGAGTG+TGG | - | chr5_1:2898910-2898929 | Msa0711030:intron | 40.0% | |
| TCCACACTCATCGTTACTAT+TGG | + | chr5_1:2898914-2898933 | None:intergenic | 40.0% | |
| TTACTCAATGTAAACGCGTG+AGG | + | chr5_1:2899048-2899067 | None:intergenic | 40.0% | |
| AAGTCCCAATGCATAAACCA+TGG | - | chr5_1:2899075-2899094 | Msa0711030:intron | 40.0% | |
| AGTCCCAATGCATAAACCAT+GGG | - | chr5_1:2899076-2899095 | Msa0711030:intron | 40.0% | |
| TCTCCCATGGTTTATGCATT+GGG | + | chr5_1:2899082-2899101 | None:intergenic | 40.0% | |
| ATCTCCCATGGTTTATGCAT+TGG | + | chr5_1:2899083-2899102 | None:intergenic | 40.0% | |
| CAAAAGAAACCGAAAAGCCT+TGG | - | chr5_1:2899199-2899218 | Msa0711030:intron | 40.0% | |
| TCAAATTAGATGCCCGATGA+AGG | - | chr5_1:2899248-2899267 | Msa0711030:intron | 40.0% | |
| GCAAAGATTGACAAGTGCAT+GGG | - | chr5_1:2899432-2899451 | Msa0711030:intron | 40.0% | |
| !!! | GAATTTTCAGTATCGGCATC+AGG | + | chr5_1:2899462-2899481 | None:intergenic | 40.0% |
| !!! | ACTGGTTTTGTAGATTGGGA+AGG | - | chr5_1:2899594-2899613 | Msa0711030:intron | 40.0% |
| !!! | CTGGTTTTGTAGATTGGGAA+GGG | - | chr5_1:2899595-2899614 | Msa0711030:intron | 40.0% |
| ! | GGCTATTTGTTCTGGATTTG+AGG | - | chr5_1:2899705-2899724 | Msa0711030:intron | 40.0% |
| GGCAAGTGTTTACTTACCTT+TGG | - | chr5_1:2899760-2899779 | Msa0711030:intron | 40.0% | |
| AACGAGTGCTTGACAAACAA+CGG | - | chr5_1:2899855-2899874 | Msa0711030:intron | 40.0% | |
| AGCTAATATCACTGCATGCA+AGG | - | chr5_1:2899899-2899918 | Msa0711030:intron | 40.0% | |
| AATTGCACACCATCAACCAA+GGG | + | chr5_1:2900043-2900062 | None:intergenic | 40.0% | |
| !! | GTTGATGGTGTGCAATTCAA+AGG | - | chr5_1:2900046-2900065 | Msa0711030:intron | 40.0% |
| GACGGTTATACAACTTGTGA+AGG | - | chr5_1:2900070-2900089 | Msa0711030:intron | 40.0% | |
| ACAACACAGCATAGAAGTGA+AGG | + | chr5_1:2900175-2900194 | None:intergenic | 40.0% | |
| TTCTATGCTGTGTTGTGCAT+AGG | - | chr5_1:2900179-2900198 | Msa0711030:CDS | 40.0% | |
| TCTATGCTGTGTTGTGCATA+GGG | - | chr5_1:2900180-2900199 | Msa0711030:CDS | 40.0% | |
| TAATCACGATCCTTTAGCTG+AGG | - | chr5_1:2900205-2900224 | Msa0711030:CDS | 40.0% | |
| AATCACGATCCTTTAGCTGA+GGG | - | chr5_1:2900206-2900225 | Msa0711030:CDS | 40.0% | |
| GTTTCTTCTGTGTTTGCAGT+CGG | - | chr5_1:2900279-2900298 | Msa0711030:intron | 40.0% | |
| AGATCAACAATGGAGGATGT+TGG | - | chr5_1:2900319-2900338 | Msa0711030:intron | 40.0% | |
| ! | TTGTGTAAACAGGATGATGG+AGG | - | chr5_1:2900513-2900532 | Msa0711030:intron | 40.0% |
| TTAAATGCCAGTGTCCTACA+GGG | - | chr5_1:2900538-2900557 | Msa0711030:intron | 40.0% | |
| ATTCAGAAAGCTACAGAGCA+GGG | + | chr5_1:2900634-2900653 | None:intergenic | 40.0% | |
| TATTCAGAAAGCTACAGAGC+AGG | + | chr5_1:2900635-2900654 | None:intergenic | 40.0% | |
| ATTTCAGTAACTCTCTCCAG+TGG | + | chr5_1:2900912-2900931 | None:intergenic | 40.0% | |
| !! | GTGTTTTTGCAGCTACATTC+AGG | + | chr5_1:2901169-2901188 | None:intergenic | 40.0% |
| TGTAGCTGCAAAAACACTTG+GGG | - | chr5_1:2901172-2901191 | Msa0711030:CDS | 40.0% | |
| GAATTCTAAATGGCTCAAGG+AGG | + | chr5_1:2901808-2901827 | None:intergenic | 40.0% | |
| GAAGGTGAGATGTATTTCAC+TGG | - | chr5_1:2901899-2901918 | Msa0711030:CDS | 40.0% | |
| TGTGCGTGGAAGATTACATA+TGG | + | chr5_1:2901937-2901956 | None:intergenic | 40.0% | |
| GGAAAACATGACAGTGCGAT+CGG | - | chr5_1:2898205-2898224 | Msa0711030:CDS | 45.0% | |
| ACAGTGCGATCGGTAACTTT+GGG | - | chr5_1:2898215-2898234 | Msa0711030:CDS | 45.0% | |
| ! | TTTGGGATTCCTCAATACGG+TGG | - | chr5_1:2898232-2898251 | Msa0711030:intron | 45.0% |
| AGCACCAGGTTTGGATTTGA+AGG | + | chr5_1:2898329-2898348 | None:intergenic | 45.0% | |
| AACTTCCACGATCAAGGAGA+AGG | + | chr5_1:2898363-2898382 | None:intergenic | 45.0% | |
| ! | GAAGGTTTGGAATGCTCAGA+AGG | - | chr5_1:2898642-2898661 | Msa0711030:CDS | 45.0% |
| ACTCGTTGCCGATGATATTG+AGG | - | chr5_1:2898681-2898700 | Msa0711030:CDS | 45.0% | |
| CAAGGGCTCCTCAATATCAT+CGG | + | chr5_1:2898692-2898711 | None:intergenic | 45.0% | |
| TGAGGAGCCCTTGATTACTA+TGG | - | chr5_1:2898699-2898718 | Msa0711030:CDS | 45.0% | |
| GGGTGTGTCCATAGTAATCA+AGG | + | chr5_1:2898710-2898729 | None:intergenic | 45.0% | |
| AGCAGATGAGACATCCTCTT+CGG | + | chr5_1:2898731-2898750 | None:intergenic | 45.0% | |
| TTGAAGGATGCCATTAGTGC+TGG | - | chr5_1:2898811-2898830 | Msa0711030:intron | 45.0% | |
| TGAAGGATGCCATTAGTGCT+GGG | - | chr5_1:2898812-2898831 | Msa0711030:intron | 45.0% | |
| TCATACTCGACACGATCATC+AGG | + | chr5_1:2898883-2898902 | None:intergenic | 45.0% | |
| ATCGTGTCGAGTATGAGTTG+TGG | - | chr5_1:2898887-2898906 | Msa0711030:intron | 45.0% | |
| GCAGCACAGATCTTAGAGAA+AGG | - | chr5_1:2898979-2898998 | Msa0711030:intron | 45.0% | |
| GCACAGATCTTAGAGAAAGG+AGG | - | chr5_1:2898982-2899001 | Msa0711030:intron | 45.0% | |
| ACTTCAGCACAGGCTATGAT+GGG | - | chr5_1:2899127-2899146 | Msa0711030:intron | 45.0% | |
| ! | AGGCTATGATGGGAAAGATG+TGG | - | chr5_1:2899137-2899156 | Msa0711030:intron | 45.0% |
| ! | GAGGCAGCTATGTGTTTTCA+AGG | - | chr5_1:2899173-2899192 | Msa0711030:intron | 45.0% |
| !! | GCAGCTATGTGTTTTCAAGG+TGG | - | chr5_1:2899176-2899195 | Msa0711030:intron | 45.0% |
| CGCAAAGATTGACAAGTGCA+TGG | - | chr5_1:2899431-2899450 | Msa0711030:intron | 45.0% | |
| GACAACAAGAGTGGGCAATA+TGG | + | chr5_1:2899638-2899657 | None:intergenic | 45.0% | |
| !!! | GGAGAAAGGTGCCGTTTTAA+AGG | - | chr5_1:2899684-2899703 | Msa0711030:intron | 45.0% |
| CGTTGCTCAAACAAACAGCT+GGG | + | chr5_1:2899741-2899760 | None:intergenic | 45.0% | |
| CCAGCTGTTTGTTTGAGCAA+CGG | - | chr5_1:2899739-2899758 | Msa0711030:intron | 45.0% | |
| TGACAAACAACGGTGGTTGT+TGG | - | chr5_1:2899865-2899884 | Msa0711030:intron | 45.0% | |
| ATTGCACACCATCAACCAAG+GGG | + | chr5_1:2900042-2900061 | None:intergenic | 45.0% | |
| GAATTGCACACCATCAACCA+AGG | + | chr5_1:2900044-2900063 | None:intergenic | 45.0% | |
| GGTGTGCAATTCAAAGGAGA+CGG | - | chr5_1:2900052-2900071 | Msa0711030:intron | 45.0% | |
| CGTTGCAAGATCAACAATGG+AGG | - | chr5_1:2900312-2900331 | Msa0711030:intron | 45.0% | |
| AGAAAATGCATGTCCGTTCC+GGG | + | chr5_1:2900352-2900371 | None:intergenic | 45.0% | |
| CAGAAAATGCATGTCCGTTC+CGG | + | chr5_1:2900353-2900372 | None:intergenic | 45.0% | |
| GTTAAATGCCAGTGTCCTAC+AGG | - | chr5_1:2900537-2900556 | Msa0711030:intron | 45.0% | |
| CTTTAAACCCTGTAGGACAC+TGG | + | chr5_1:2900548-2900567 | None:intergenic | 45.0% | |
| CAGTGTCCTACAGGGTTTAA+AGG | - | chr5_1:2900546-2900565 | Msa0711030:intron | 45.0% | |
| CCATCACCTTTAAACCCTGT+AGG | + | chr5_1:2900555-2900574 | None:intergenic | 45.0% | |
| CCTACAGGGTTTAAAGGTGA+TGG | - | chr5_1:2900552-2900571 | Msa0711030:intron | 45.0% | |
| TTCAGAAAGCTACAGAGCAG+GGG | + | chr5_1:2900633-2900652 | None:intergenic | 45.0% | |
| TCCTCTCTGTTTGTTTCCAC+TGG | - | chr5_1:2900893-2900912 | Msa0711030:CDS | 45.0% | |
| TCCAGTGGAAACAAACAGAG+AGG | + | chr5_1:2900897-2900916 | None:intergenic | 45.0% | |
| AGAATCTGCAGCTACTTGAC+TGG | + | chr5_1:2900994-2901013 | None:intergenic | 45.0% | |
| TGCAGATTCTTCGTAGTCCA+TGG | - | chr5_1:2901004-2901023 | Msa0711030:CDS | 45.0% | |
| GCAGATTCTTCGTAGTCCAT+GGG | - | chr5_1:2901005-2901024 | Msa0711030:CDS | 45.0% | |
| CACAATGCTTGTTCAACCCA+TGG | + | chr5_1:2901024-2901043 | None:intergenic | 45.0% | |
| TACAGGTAAAACTGCCAGTC+AGG | - | chr5_1:2901368-2901387 | Msa0711030:intron | 45.0% | |
| CAGTCAGGCAAAATCCACTT+GGG | - | chr5_1:2901383-2901402 | Msa0711030:intron | 45.0% | |
| !!! | AATCCACTTGGGCTGCTTTT+TGG | - | chr5_1:2901394-2901413 | Msa0711030:intron | 45.0% |
| !!! | ATCCACTTGGGCTGCTTTTT+GGG | - | chr5_1:2901395-2901414 | Msa0711030:intron | 45.0% |
| !! | ATTGGCTTGGGTATGATTGC+TGG | - | chr5_1:2901426-2901445 | Msa0711030:intron | 45.0% |
| TCTGCTGCATTCTCTCAGTT+TGG | - | chr5_1:2901489-2901508 | Msa0711030:intron | 45.0% | |
| !! | GGTGGTTTTGCAGCAATACA+TGG | - | chr5_1:2901627-2901646 | Msa0711030:CDS | 45.0% |
| ! | CGTGATTTGGAACTTCTGCT+TGG | + | chr5_1:2901699-2901718 | None:intergenic | 45.0% |
| AGAAAAACAGTCCAGTCTCG+TGG | - | chr5_1:2901742-2901761 | Msa0711030:CDS | 45.0% | |
| GAAAAACAGTCCAGTCTCGT+GGG | - | chr5_1:2901743-2901762 | Msa0711030:CDS | 45.0% | |
| GGTGGAGAAGAACAGCTTGT+CGG | - | chr5_1:2898159-2898178 | Msa0711030:CDS | 50.0% | |
| GACAGTGCGATCGGTAACTT+TGG | - | chr5_1:2898214-2898233 | Msa0711030:CDS | 50.0% | |
| TCCTCAATACGGTGGTAGCA+TGG | - | chr5_1:2898240-2898259 | Msa0711030:intron | 50.0% | |
| CGATCAAGGAGAAGGATGGT+AGG | + | chr5_1:2898355-2898374 | None:intergenic | 50.0% | |
| ACCATCCTTCTCCTTGATCG+TGG | - | chr5_1:2898355-2898374 | Msa0711030:intron | 50.0% | |
| TCCACGATCAAGGAGAAGGA+TGG | + | chr5_1:2898359-2898378 | None:intergenic | 50.0% | |
| ! | GTTTGGAATGCTCAGAAGGC+TGG | - | chr5_1:2898646-2898665 | Msa0711030:CDS | 50.0% |
| TACTATGGACACACCCGAAG+AGG | - | chr5_1:2898714-2898733 | Msa0711030:CDS | 50.0% | |
| GCAGATGAGACATCCTCTTC+GGG | + | chr5_1:2898730-2898749 | None:intergenic | 50.0% | |
| GAAGGATGCCATTAGTGCTG+GGG | - | chr5_1:2898813-2898832 | Msa0711030:intron | 50.0% | |
| ! | TGCCATTAGTGCTGGGGATA+TGG | - | chr5_1:2898819-2898838 | Msa0711030:intron | 50.0% |
| GACCATATCCCCAGCACTAA+TGG | + | chr5_1:2898824-2898843 | None:intergenic | 50.0% | |
| TCGACACGATCATCAGGATG+AGG | + | chr5_1:2898877-2898896 | None:intergenic | 50.0% | |
| GACTTCAGCACAGGCTATGA+TGG | - | chr5_1:2899126-2899145 | Msa0711030:intron | 50.0% | |
| AAACCGAAAAGCCTTGGGTG+TGG | - | chr5_1:2899205-2899224 | Msa0711030:intron | 50.0% | |
| TAGATTGGGAAGGGATCACG+CGG | - | chr5_1:2899604-2899623 | Msa0711030:intron | 50.0% | |
| CCGTTGCTCAAACAAACAGC+TGG | + | chr5_1:2899742-2899761 | None:intergenic | 50.0% | |
| TTCTGATTCCTGTGCAGACG+TGG | - | chr5_1:2899827-2899846 | Msa0711030:CDS | 50.0% | |
| GTTTGTTTCCACGTCTGCAC+AGG | + | chr5_1:2899838-2899857 | None:intergenic | 50.0% | |
| GAGTGCTTGACAAACAACGG+TGG | - | chr5_1:2899858-2899877 | Msa0711030:intron | 50.0% | |
| AAACAACGGTGGTTGTTGGC+AGG | - | chr5_1:2899869-2899888 | Msa0711030:intron | 50.0% | |
| ATCTGCCAGGATACATTCCG+TGG | - | chr5_1:2900001-2900020 | Msa0711030:CDS | 50.0% | |
| TCTGCCAGGATACATTCCGT+GGG | - | chr5_1:2900002-2900021 | Msa0711030:CDS | 50.0% | |
| TGTGAATGCCCCTTGGTTGA+TGG | - | chr5_1:2900031-2900050 | Msa0711030:intron | 50.0% | |
| CACAGATGTCCCTCAGCTAA+AGG | + | chr5_1:2900218-2900237 | None:intergenic | 50.0% | |
| ACACAACTACGAGTGCACGT+GGG | + | chr5_1:2900252-2900271 | None:intergenic | 50.0% | |
| TCTTCTGTGTTTGCAGTCGG+TGG | - | chr5_1:2900282-2900301 | Msa0711030:intron | 50.0% | |
| TTGTTGATCTTGCAACGCCC+AGG | + | chr5_1:2900309-2900328 | None:intergenic | 50.0% | |
| ! | GGGCGTTGCAAGATCAACAA+TGG | - | chr5_1:2900309-2900328 | Msa0711030:intron | 50.0% |
| TCAGAAAGCTACAGAGCAGG+GGG | + | chr5_1:2900632-2900651 | None:intergenic | 50.0% | |
| AGCTATGACTGCAGTTGCAG+TGG | - | chr5_1:2901196-2901215 | Msa0711030:CDS | 50.0% | |
| !! | CCAAGTGGATTTTGCCTGAC+TGG | + | chr5_1:2901385-2901404 | None:intergenic | 50.0% |
| CCAGTCAGGCAAAATCCACT+TGG | - | chr5_1:2901382-2901401 | Msa0711030:intron | 50.0% | |
| AACCCAAAAAGCAGCCCAAG+TGG | + | chr5_1:2901400-2901419 | None:intergenic | 50.0% | |
| GCTTGGGTATGATTGCTGGA+GGG | - | chr5_1:2901430-2901449 | Msa0711030:intron | 50.0% | |
| CTTGGGTATGATTGCTGGAG+GGG | - | chr5_1:2901431-2901450 | Msa0711030:intron | 50.0% | |
| TTGGGTATGATTGCTGGAGG+GGG | - | chr5_1:2901432-2901451 | Msa0711030:intron | 50.0% | |
| CATGGCACAATATATGCCCC+TGG | - | chr5_1:2901669-2901688 | Msa0711030:CDS | 50.0% | |
| AACTTCTGCTTGGCTGTCCA+GGG | + | chr5_1:2901689-2901708 | None:intergenic | 50.0% | |
| TCCAGTCTCGTGGGATTTCA+TGG | - | chr5_1:2901752-2901771 | Msa0711030:CDS | 50.0% | |
| GGATTTCATGGCGTGTAGCA+TGG | - | chr5_1:2901764-2901783 | Msa0711030:CDS | 50.0% | |
| GGATGTGTGTTGCCATGCAT+TGG | - | chr5_1:2902072-2902091 | Msa0711030:CDS | 50.0% | |
| !! | GGGTTGGGTTGGGTTTGGTT+TGG | + | chr5_1:2897794-2897813 | None:intergenic | 55.0% |
| ACCAAACCCAACCCAACCCT+CGG | - | chr5_1:2897795-2897814 | Msa0711030:three_prime_UTR | 55.0% | |
| AGTCTACCGAGGGTTGGGTT+GGG | + | chr5_1:2897804-2897823 | None:intergenic | 55.0% | |
| TAGGGAGTCTACCGAGGGTT+GGG | + | chr5_1:2897809-2897828 | None:intergenic | 55.0% | |
| TTAGGGAGTCTACCGAGGGT+TGG | + | chr5_1:2897810-2897829 | None:intergenic | 55.0% | |
| ! | CTGATGGGTCTCGACTCGAT+CGG | + | chr5_1:2898062-2898081 | None:intergenic | 55.0% |
| GATGTCAACGGCGAGATTCG+TGG | - | chr5_1:2898138-2898157 | Msa0711030:exon | 55.0% | |
| GCCATGCTACCACCGTATTG+AGG | + | chr5_1:2898244-2898263 | None:intergenic | 55.0% | |
| CAATACGGTGGTAGCATGGC+TGG | - | chr5_1:2898244-2898263 | Msa0711030:intron | 55.0% | |
| !! | GGTAGGAAGAGCACCAGGTT+TGG | + | chr5_1:2898338-2898357 | None:intergenic | 55.0% |
| !! | AGGATGGTAGGAAGAGCACC+AGG | + | chr5_1:2898343-2898362 | None:intergenic | 55.0% |
| TCAGAAGGCTGGAGCTTCTG+CGG | - | chr5_1:2898657-2898676 | Msa0711030:CDS | 55.0% | |
| CCATGGGAGATATTGCGCTC+CGG | - | chr5_1:2899092-2899111 | Msa0711030:intron | 55.0% | |
| CTGAAGTCCTGCTCAGGATC+CGG | + | chr5_1:2899114-2899133 | None:intergenic | 55.0% | |
| ! | CCACCACACCCAAGGCTTTT+CGG | + | chr5_1:2899211-2899230 | None:intergenic | 55.0% |
| CGAAAAGCCTTGGGTGTGGT+GGG | - | chr5_1:2899209-2899228 | Msa0711030:intron | 55.0% | |
| ACATAGTCCCACCACACCCA+AGG | + | chr5_1:2899219-2899238 | None:intergenic | 55.0% | |
| GGCATTCACATACTCGCCCA+CGG | + | chr5_1:2900021-2900040 | None:intergenic | 55.0% | |
| GCGAGTATGTGAATGCCCCT+TGG | - | chr5_1:2900024-2900043 | Msa0711030:intron | 55.0% | |
| CACAACTACGAGTGCACGTG+GGG | + | chr5_1:2900251-2900270 | None:intergenic | 55.0% | |
| CACACAACTACGAGTGCACG+TGG | + | chr5_1:2900253-2900272 | None:intergenic | 55.0% | |
| TGTTTGCAGTCGGTGGACCT+GGG | - | chr5_1:2900289-2900308 | Msa0711030:intron | 55.0% | |
| GAGGATGTTGGCATGATGCC+CGG | - | chr5_1:2900331-2900350 | Msa0711030:intron | 55.0% | |
| TGTTGGCATGATGCCCGGAA+CGG | - | chr5_1:2900336-2900355 | Msa0711030:intron | 55.0% | |
| AGAAAGCTACAGAGCAGGGG+GGG | + | chr5_1:2900630-2900649 | None:intergenic | 55.0% | |
| CAGAAAGCTACAGAGCAGGG+GGG | + | chr5_1:2900631-2900650 | None:intergenic | 55.0% | |
| GGCTTGGGTATGATTGCTGG+AGG | - | chr5_1:2901429-2901448 | Msa0711030:intron | 55.0% | |
| ACTTCTGCTTGGCTGTCCAG+GGG | + | chr5_1:2901688-2901707 | None:intergenic | 55.0% | |
| GAACTTCTGCTTGGCTGTCC+AGG | + | chr5_1:2901690-2901709 | None:intergenic | 55.0% | |
| GCCATGAAATCCCACGAGAC+TGG | + | chr5_1:2901756-2901775 | None:intergenic | 55.0% | |
| CATGGCGTGTAGCATGGATG+TGG | - | chr5_1:2901770-2901789 | Msa0711030:CDS | 55.0% | |
| !! | ACCGAGGGTTGGGTTGGGTT+TGG | + | chr5_1:2897799-2897818 | None:intergenic | 60.0% |
| GAGTCTACCGAGGGTTGGGT+TGG | + | chr5_1:2897805-2897824 | None:intergenic | 60.0% | |
| GTCAACGGCGAGATTCGTGG+TGG | - | chr5_1:2898141-2898160 | Msa0711030:CDS | 60.0% | |
| CCGGAGCGCAATATCTCCCA+TGG | + | chr5_1:2899095-2899114 | None:intergenic | 60.0% | |
| CCTGTGCTGAAGTCCTGCTC+AGG | + | chr5_1:2899120-2899139 | None:intergenic | 60.0% | |
| CCTGAGCAGGACTTCAGCAC+AGG | - | chr5_1:2899117-2899136 | Msa0711030:intron | 60.0% | |
| CCGAAAAGCCTTGGGTGTGG+TGG | - | chr5_1:2899208-2899227 | Msa0711030:intron | 60.0% | |
| CTCGCCCACGGAATGTATCC+TGG | + | chr5_1:2900009-2900028 | None:intergenic | 60.0% | |
| GTGTTTGCAGTCGGTGGACC+TGG | - | chr5_1:2900288-2900307 | Msa0711030:intron | 60.0% | |
| TTGCGCTCCGGATCCTGAGC+AGG | - | chr5_1:2899104-2899123 | Msa0711030:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 2897756 | 2902121 | 2897756 | ID=Msa0711030;Name=Msa0711030 |
| chr5_1 | mRNA | 2897756 | 2902121 | 2897756 | ID=Msa0711030-mRNA-1;Parent=Msa0711030;Name=Msa0711030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.90|0.83|1|0.90|0.83|12|383|735 |
| chr5_1 | exon | 2897756 | 2898237 | 2897756 | ID=Msa0711030-mRNA-1:exon:1013;Parent=Msa0711030-mRNA-1 |
| chr5_1 | exon | 2898395 | 2898504 | 2898395 | ID=Msa0711030-mRNA-1:exon:1012;Parent=Msa0711030-mRNA-1 |
| chr5_1 | exon | 2898621 | 2898749 | 2898621 | ID=Msa0711030-mRNA-1:exon:1011;Parent=Msa0711030-mRNA-1 |
| chr5_1 | exon | 2899286 | 2899352 | 2899286 | ID=Msa0711030-mRNA-1:exon:1010;Parent=Msa0711030-mRNA-1 |
| chr5_1 | exon | 2899497 | 2899579 | 2899497 | ID=Msa0711030-mRNA-1:exon:1009;Parent=Msa0711030-mRNA-1 |
| chr5_1 | exon | 2899786 | 2899867 | 2899786 | ID=Msa0711030-mRNA-1:exon:1008;Parent=Msa0711030-mRNA-1 |
| chr5_1 | exon | 2899957 | 2900033 | 2899957 | ID=Msa0711030-mRNA-1:exon:1007;Parent=Msa0711030-mRNA-1 |
| chr5_1 | exon | 2900096 | 2900270 | 2900096 | ID=Msa0711030-mRNA-1:exon:1006;Parent=Msa0711030-mRNA-1 |
| chr5_1 | exon | 2900368 | 2900456 | 2900368 | ID=Msa0711030-mRNA-1:exon:1005;Parent=Msa0711030-mRNA-1 |
| chr5_1 | exon | 2900559 | 2901251 | 2900559 | ID=Msa0711030-mRNA-1:exon:1004;Parent=Msa0711030-mRNA-1 |
| chr5_1 | exon | 2901498 | 2902004 | 2901498 | ID=Msa0711030-mRNA-1:exon:1003;Parent=Msa0711030-mRNA-1 |
| chr5_1 | exon | 2902025 | 2902121 | 2902025 | ID=Msa0711030-mRNA-1:exon:1002;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2902025 | 2902121 | 2902025 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2901498 | 2902004 | 2901498 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2900559 | 2901251 | 2900559 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2900368 | 2900456 | 2900368 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2900096 | 2900270 | 2900096 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2899957 | 2900033 | 2899957 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2899786 | 2899867 | 2899786 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2899497 | 2899579 | 2899497 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2899286 | 2899352 | 2899286 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2898621 | 2898749 | 2898621 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2898395 | 2898504 | 2898395 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | CDS | 2898139 | 2898237 | 2898139 | ID=Msa0711030-mRNA-1:cds;Parent=Msa0711030-mRNA-1 |
| chr5_1 | three_prime_UTR | 2897756 | 2898138 | 2897756 | ID=Msa0711030-mRNA-1:three_prime_utr;Parent=Msa0711030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
