AlfalfaGEDB | Msa0712040

M. sativa cultivar zhongmu-4 / Msa0712040

KEGG: K06688
GO: GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818
PFAM: PF00179.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0712040	XP_003610967.1	98.305	177	3	0	1	177	1	177	2.02e-127	365

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0712040	sp\|Q9LJZ5\|UBC19_ARATH	85.256	156	23	0	18	173	22	177	1.43e-98	285

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0712040	G7K9A0	98.305	177	3	0	1	177	1	177	9.63e-128	365

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0712040	Msa0749980	0.862079	6.533125e-64	-8.615850e-47
Msa0712040	Msa0814720	0.857392	1.683890e-62	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0712040	MtrunA17_Chr5g0396451	98.305	177	3	0	1	177	1	177	1.85e-131	365
Msa0712040	MtrunA17_Chr4g0038891	85.876	177	25	0	1	177	1	177	5.36e-115	323
Msa0712040	MtrunA17_Chr1g0199951	64.286	168	59	1	6	172	15	182	4.38e-74	221
Msa0712040	MtrunA17_Chr4g0060351	45.652	138	74	1	35	171	7	144	6.73e-39	130
Msa0712040	MtrunA17_Chr8g0362321	44.928	138	75	1	35	171	7	144	8.64e-39	129
Msa0712040	MtrunA17_Chr2g0316201	46.094	128	69	0	35	162	8	135	9.00e-36	122
Msa0712040	MtrunA17_Chr2g0316211	45.669	127	69	0	36	162	9	135	5.00e-35	120
Msa0712040	MtrunA17_Chr8g0369311	41.606	137	79	1	29	164	54	190	1.46e-32	115
Msa0712040	MtrunA17_Chr4g0037011	43.089	123	70	0	35	157	4	126	2.96e-32	113
Msa0712040	MtrunA17_Chr3g0108261	41.406	128	75	0	35	162	4	131	4.33e-32	112
Msa0712040	MtrunA17_Chr5g0432831	41.406	128	75	0	35	162	4	131	4.33e-32	112
Msa0712040	MtrunA17_Chr7g0275361	40.458	131	77	1	35	164	4	134	9.75e-32	111
Msa0712040	MtrunA17_Chr1g0154011	41.406	128	75	0	35	162	4	131	2.10e-31	110
Msa0712040	MtrunA17_Chr4g0031181	35.252	139	76	2	49	173	22	160	4.83e-26	97.8
Msa0712040	MtrunA17_Chr8g0378601	37.097	124	78	0	35	158	25	148	2.20e-24	93.6
Msa0712040	MtrunA17_Chr3g0131871	38.211	123	74	2	36	156	6	128	7.78e-24	92.8
Msa0712040	MtrunA17_Chr2g0328001	35.115	131	71	2	57	173	30	160	5.21e-23	89.7
Msa0712040	MtrunA17_Chr3g0139901	36.607	112	70	1	47	157	20	131	2.29e-22	87.8
Msa0712040	MtrunA17_Chr5g0401831	34.932	146	87	3	36	173	8	153	2.42e-21	85.5
Msa0712040	MtrunA17_Chr4g0053191	35.915	142	83	3	36	169	8	149	3.67e-21	84.7
Msa0712040	MtrunA17_Chr4g0059291	36.000	125	75	4	35	157	6	127	2.67e-20	83.2
Msa0712040	MtrunA17_Chr8g0348701	34.400	125	77	4	35	157	6	127	4.06e-18	77.4
Msa0712040	MtrunA17_Chr5g0403591	31.746	126	85	1	36	161	33	157	6.68e-18	77.0
Msa0712040	MtrunA17_Chr8g0387131	34.400	125	77	4	35	157	6	127	2.34e-17	75.5
Msa0712040	MtrunA17_Chr7g0254701	30.496	141	97	1	32	171	10	150	2.54e-16	74.3
Msa0712040	MtrunA17_Chr8g0372391	36.364	99	61	2	36	133	19	116	1.51e-15	70.1
Msa0712040	MtrunA17_Chr5g0404931	36.364	99	61	2	36	133	19	116	4.13e-14	66.6
Msa0712040	MtrunA17_Chr8g0345331	32.759	116	69	3	31	141	4	115	4.14e-11	59.7
Msa0712040	MtrunA17_Chr4g0068301	29.688	128	74	4	33	155	11	127	8.03e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0712040	AT3G20060.1	85.256	156	23	0	18	173	22	177	1.46e-99	285
Msa0712040	AT1G50490.1	85.000	160	24	0	18	177	21	180	9.45e-94	270
Msa0712040	AT3G20060.2	87.879	132	16	0	42	173	1	132	2.88e-87	252
Msa0712040	AT1G14400.1	44.928	138	75	1	35	171	7	144	4.90e-38	128
Msa0712040	AT1G14400.2	44.928	138	75	1	35	171	7	144	4.90e-38	128
Msa0712040	AT2G02760.1	44.928	138	75	1	35	171	7	144	5.52e-38	128
Msa0712040	AT2G02760.2	44.928	138	75	1	35	171	7	144	5.52e-38	128
Msa0712040	AT2G02760.4	44.928	138	75	1	35	171	7	144	5.52e-38	128
Msa0712040	AT2G02760.3	44.928	138	75	1	35	171	7	144	5.52e-38	128
Msa0712040	AT5G62540.1	45.775	142	75	2	30	169	2	143	6.20e-37	125
Msa0712040	AT1G78870.2	46.094	128	69	0	35	162	8	135	1.27e-35	122
Msa0712040	AT1G16890.2	45.312	128	70	0	35	162	8	135	5.55e-35	120
Msa0712040	AT1G16890.3	46.923	130	67	1	35	162	15	144	4.07e-34	118
Msa0712040	AT5G56150.1	42.188	128	74	0	35	162	4	131	2.16e-32	113
Msa0712040	AT2G16740.1	39.706	136	81	1	35	169	4	139	3.67e-32	113
Msa0712040	AT1G64230.2	41.406	128	75	0	35	162	4	131	7.41e-32	112
Msa0712040	AT1G64230.1	41.406	128	75	0	35	162	4	131	7.41e-32	112
Msa0712040	AT4G27960.1	40.625	128	76	0	35	162	4	131	1.19e-31	112
Msa0712040	AT3G08700.2	40.580	138	80	2	35	170	4	141	1.54e-31	111
Msa0712040	AT3G08700.1	40.580	138	80	2	35	170	4	141	1.54e-31	111
Msa0712040	AT3G08690.2	41.935	124	72	0	35	158	4	127	3.76e-31	110
Msa0712040	AT3G08690.1	41.935	124	72	0	35	158	4	127	3.76e-31	110
Msa0712040	AT5G41700.5	39.844	128	77	0	35	162	4	131	5.56e-31	110
Msa0712040	AT5G41700.2	39.844	128	77	0	35	162	4	131	5.56e-31	110
Msa0712040	AT5G41700.1	39.844	128	77	0	35	162	4	131	5.56e-31	110
Msa0712040	AT5G53300.2	39.844	128	77	0	35	162	4	131	6.06e-31	110
Msa0712040	AT5G53300.4	39.844	128	77	0	35	162	4	131	6.06e-31	110
Msa0712040	AT5G53300.1	39.844	128	77	0	35	162	4	131	6.06e-31	110
Msa0712040	AT4G27960.2	40.625	128	76	0	35	162	34	161	1.63e-30	109
Msa0712040	AT1G16890.1	51.579	95	46	0	68	162	8	102	1.23e-29	105
Msa0712040	AT1G78870.4	51.579	95	46	0	68	162	8	102	1.48e-29	105
Msa0712040	AT5G41700.4	39.535	129	77	1	35	162	4	132	6.66e-29	104
Msa0712040	AT1G64230.3	38.686	137	75	1	35	162	4	140	1.24e-28	104
Msa0712040	AT1G78870.3	45.714	105	57	0	35	139	8	112	3.31e-28	102
Msa0712040	AT1G64230.5	42.727	110	62	1	56	164	67	176	4.22e-28	103
Msa0712040	AT1G64230.4	42.727	110	62	1	56	164	67	176	4.22e-28	103
Msa0712040	AT1G78870.1	51.042	96	46	1	68	162	8	103	6.37e-28	101
Msa0712040	AT3G13550.1	37.500	136	85	0	35	170	39	174	3.56e-26	99.0
Msa0712040	AT1G36340.2	40.876	137	79	2	26	162	3	137	1.83e-25	96.3
Msa0712040	AT1G36340.1	40.876	137	79	2	26	162	3	137	1.83e-25	96.3
Msa0712040	AT5G50870.1	40.000	135	73	4	34	166	4	132	1.89e-25	97.1
Msa0712040	AT5G50870.2	41.129	124	68	3	34	155	4	124	2.70e-25	97.1
Msa0712040	AT5G56150.2	41.000	100	59	0	35	134	4	103	7.43e-24	90.9
Msa0712040	AT3G55380.1	33.813	139	78	2	49	173	23	161	4.13e-23	90.5
Msa0712040	AT3G13550.2	39.091	110	67	0	35	144	39	148	6.83e-23	90.1
Msa0712040	AT5G59300.1	34.351	131	72	2	57	173	30	160	1.03e-22	89.4
Msa0712040	AT5G41700.3	38.462	104	64	0	35	138	4	107	1.36e-22	88.6
Msa0712040	AT3G46460.1	33.813	139	78	2	49	173	22	160	1.75e-22	89.0
Msa0712040	AT5G25760.1	36.290	124	73	2	35	157	13	131	2.58e-22	88.2
Msa0712040	AT5G25760.2	36.290	124	73	2	35	157	13	131	2.58e-22	88.2
Msa0712040	AT5G53300.3	38.384	99	61	0	35	133	4	102	5.37e-22	85.9
Msa0712040	AT1G63800.1	38.400	125	72	4	35	157	6	127	9.53e-22	87.4
Msa0712040	AT5G41340.1	37.600	125	73	4	35	157	6	127	6.61e-21	85.1
Msa0712040	AT3G57870.1	35.915	142	83	3	36	169	9	150	3.99e-20	82.4
Msa0712040	AT2G18600.1	33.333	153	92	5	7	157	11	155	1.75e-19	81.6
Msa0712040	AT2G18600.2	33.333	153	92	5	7	157	11	155	1.75e-19	81.6
Msa0712040	AT1G63800.2	40.217	92	53	2	68	157	21	112	2.11e-19	80.9
Msa0712040	AT2G46030.5	36.000	125	75	4	35	157	6	127	6.23e-19	80.1
Msa0712040	AT2G46030.1	36.000	125	75	4	35	157	6	127	6.23e-19	80.1
Msa0712040	AT2G46030.3	36.000	125	75	4	35	157	78	199	4.41e-18	79.3
Msa0712040	AT4G36800.2	31.061	132	89	2	27	157	24	154	2.30e-17	75.9
Msa0712040	AT4G36800.1	31.061	132	89	2	27	157	24	154	2.30e-17	75.9
Msa0712040	AT5G05080.2	31.410	156	98	3	18	172	3	150	8.05e-17	75.9
Msa0712040	AT5G05080.3	31.410	156	98	3	18	172	3	150	8.05e-17	75.9
Msa0712040	AT5G05080.1	31.410	156	98	3	18	172	3	150	8.05e-17	75.9
Msa0712040	AT5G05080.4	31.410	156	98	3	18	172	3	150	8.05e-17	75.9
Msa0712040	AT5G41340.2	40.000	85	49	2	75	157	8	92	2.89e-16	72.4
Msa0712040	AT3G24515.1	32.484	157	86	5	36	173	10	165	3.97e-16	75.5
Msa0712040	AT2G46030.4	35.644	101	63	2	59	157	30	130	4.79e-16	72.4
Msa0712040	AT2G46030.2	35.644	101	63	2	59	157	30	130	4.79e-16	72.4
Msa0712040	AT3G46460.3	33.333	111	60	2	77	173	8	118	6.79e-16	70.5
Msa0712040	AT3G46460.2	33.333	111	60	2	77	173	8	118	6.79e-16	70.5
Msa0712040	AT3G55380.2	26.590	173	79	3	49	173	23	195	8.45e-16	72.0
Msa0712040	AT3G24515.3	35.652	115	65	3	68	173	76	190	9.41e-16	74.3
Msa0712040	AT1G75440.1	33.333	111	72	2	24	133	7	116	2.95e-14	67.4
Msa0712040	AT1G45050.1	32.432	111	73	2	24	133	7	116	4.17e-14	67.0
Msa0712040	AT4G36410.1	34.286	105	67	2	30	133	13	116	9.83e-14	65.9
Msa0712040	AT5G42990.1	32.432	111	73	2	24	133	7	116	1.82e-13	65.1
Msa0712040	AT2G32790.1	35.246	122	76	1	53	174	51	169	1.32e-12	63.2

Find 63 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGAAACGACGTCGAATTTA+AGG	0.146354	5_1:+3887924	None:intergenic
GGCTAGTAATCTTGGATAAA+TGG	0.214253	5_1:+3887993	None:intergenic
CTAGCCGTTGTGATTAATTT+AGG	0.214997	5_1:-3887976	Msa0712040:five_prime_UTR
TTGACCTTTGGAGCCTTAAA+AGG	0.231384	5_1:+3886803	None:intergenic
GATTGAGTGTCAACGGATTT+AGG	0.260118	5_1:+3887659	None:intergenic
TTTCATCCTTTCCTTTGCTT+TGG	0.272896	5_1:-3886166	Msa0712040:three_prime_UTR
TCTTTCTCTTTCTCTTTCAA+TGG	0.299312	5_1:-3887750	Msa0712040:exon
TGATTTCTCTTCTCTATGTC+TGG	0.334622	5_1:-3886236	Msa0712040:three_prime_UTR
CACAATATATTGTCCTCTTC+AGG	0.336865	5_1:+3886911	None:intergenic
CAGGTTGCAGTCTGAATTGA+TGG	0.339528	5_1:-3887233	Msa0712040:CDS
TATTTGCCTGGACATTCTTC+AGG	0.340447	5_1:-3886735	Msa0712040:intron
TTTATTTACACCACAACATT+TGG	0.354542	5_1:-3885360	Msa0712040:three_prime_UTR
TGGCAGATGAGTGGAGATTC+TGG	0.360212	5_1:-3886947	Msa0712040:intron
TGTCTGGTTGTGATCTGCTT+TGG	0.374694	5_1:-3886220	Msa0712040:three_prime_UTR
AAAGTGAAAAGTAAAATAAA+AGG	0.386904	5_1:+3885394	None:intergenic
ATCACAACGGCTAGTAATCT+TGG	0.394022	5_1:+3887985	None:intergenic
GTGGTGTCAAATTTGACCTT+TGG	0.405768	5_1:+3886791	None:intergenic
TTGCCATGCAAATCAACATT+GGG	0.409629	5_1:+3886758	None:intergenic
ATCCACAAGCAGCACAGCTT+TGG	0.411990	5_1:-3886422	Msa0712040:CDS
GTCTGAATTGATGGCTTTGA+TGG	0.419788	5_1:-3887224	Msa0712040:intron
AATGGAAATAAATCACAGTT+TGG	0.423708	5_1:+3888011	None:intergenic
TTTAGCGGCGAGCTAATGTT+TGG	0.426525	5_1:+3886444	None:intergenic
CACCCCAATGTTGATTTGCA+TGG	0.432591	5_1:-3886761	Msa0712040:CDS
CTCCAAAGCTGTGCTGCTTG+TGG	0.432715	5_1:+3886420	None:intergenic
GGAGGGAGAGGTTGCATTGA+AGG	0.440179	5_1:+3887683	None:intergenic
ACACTCAATCTGTTCTCAAA+AGG	0.451346	5_1:-3887646	Msa0712040:intron
AAGAGAGAAACAATCATGTA+TGG	0.452980	5_1:+3886137	None:intergenic
AGCCTTAAAAGGATACTCAT+TGG	0.457477	5_1:+3886814	None:intergenic
GCCTTAAAAGGATACTCATT+GGG	0.466815	5_1:+3886815	None:intergenic
ATTCGACGTCGTTTCGTGAA+AGG	0.468821	5_1:-3887918	Msa0712040:five_prime_UTR
TTCTACAGAATACAGGAAGA+TGG	0.481814	5_1:-3886311	Msa0712040:intron
AGCAAAGACACTGTCTTTGA+AGG	0.498680	5_1:-3886866	Msa0712040:CDS
TTTCAAATTTACCTCCTAGC+AGG	0.498899	5_1:+3886546	None:intergenic
TGCTGCTTAAACTTTGATCT+CGG	0.502717	5_1:-3886266	Msa0712040:exon
TATTCTTCTTTGGAGCTTTG+GGG	0.507539	5_1:-3885533	Msa0712040:intron
TGCTGGAAAGGAACAATAGC+AGG	0.507664	5_1:-3886890	Msa0712040:CDS
GTGTCAACGGATTTAGGCGG+AGG	0.521333	5_1:+3887665	None:intergenic
TTTGCATGGCAATATTTGCC+TGG	0.525403	5_1:-3886747	Msa0712040:CDS
GACAATATATTGTGCTGGAA+AGG	0.525589	5_1:-3886902	Msa0712040:CDS
AAGAGGACAATATATTGTGC+TGG	0.531992	5_1:-3886907	Msa0712040:CDS
ACGGATTTAGGCGGAGGGAG+AGG	0.544685	5_1:+3887671	None:intergenic
TCATTACCTGAAGAATGTCC+AGG	0.544726	5_1:+3886729	None:intergenic
GAGAACAGATTGAGTGTCAA+CGG	0.546293	5_1:+3887652	None:intergenic
TTGTCAATTCAAAGCCTGCT+AGG	0.548402	5_1:-3886560	Msa0712040:CDS
GAGATCAAAGTTTAAGCAGC+AGG	0.549093	5_1:+3886268	None:intergenic
ATTCTTCTTTGGAGCTTTGG+GGG	0.562565	5_1:-3885532	Msa0712040:intron
TATGGAAAATTCCAAAGCAA+AGG	0.569032	5_1:+3886155	None:intergenic
ATTGCCATGCAAATCAACAT+TGG	0.581157	5_1:+3886757	None:intergenic
GATCTGCTTTGGAAAAGAGA+AGG	0.581476	5_1:-3886209	Msa0712040:three_prime_UTR
AAAATTCCAAAGCAAAGGAA+AGG	0.586656	5_1:+3886160	None:intergenic
TGTGCTGCTTGTGGATTTAG+CGG	0.595779	5_1:+3886429	None:intergenic
GTGATTATTTGGCAGATGAG+TGG	0.606809	5_1:-3886956	Msa0712040:intron
CAGCTTTGGAGCAATCAAGA+AGG	0.619795	5_1:-3886408	Msa0712040:intron
ATCTGCTTTGGAAAAGAGAA+GGG	0.635430	5_1:-3886208	Msa0712040:three_prime_UTR
TCAATTCAAAGCCTGCTAGG+AGG	0.657162	5_1:-3886557	Msa0712040:intron
TGTCAACGGATTTAGGCGGA+GGG	0.657757	5_1:+3887666	None:intergenic
GAAGCCTAAATTAATCACAA+CGG	0.665447	5_1:+3887972	None:intergenic
ATAATGAATACCAAATGTTG+TGG	0.669671	5_1:+3885350	None:intergenic
AACGACGTCGAATTTAAGGT+CGG	0.671314	5_1:+3887928	None:intergenic
CATGCAAATCAACATTGGGG+TGG	0.679728	5_1:+3886762	None:intergenic
TGAGTGTCAACGGATTTAGG+CGG	0.688984	5_1:+3887662	None:intergenic
TGCCATGCAAATCAACATTG+GGG	0.689638	5_1:+3886759	None:intergenic
AACATTGGGGTGGAAGCATG+TGG	0.689650	5_1:+3886772	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTAATTTACTTAATTTTG+GGG	-	chr5_1:3885908-3885927	Msa0712040:intron	10.0%
!!!	CTTTTTAATTTACTTAATTT+TGG	-	chr5_1:3885978-3885997	Msa0712040:intron	10.0%
!!!	GTTTAGTTAATTTAAAATAT+TGG	-	chr5_1:3886032-3886051	Msa0712040:intron	10.0%
!!	CAAAAAAAACAAAAAAATAT+TGG	-	chr5_1:3886068-3886087	Msa0712040:intron	10.0%
!!!	TGTTGATTGAATTAAAATTT+AGG	-	chr5_1:3885881-3885900	Msa0712040:intron	15.0%
!!	GTTGATTGAATTAAAATTTA+GGG	-	chr5_1:3885882-3885901	Msa0712040:intron	15.0%
!!!	AGTTAATTTAAAATATTGGT+AGG	-	chr5_1:3886036-3886055	Msa0712040:intron	15.0%
!!!	GTTAATTTAAAATATTGGTA+GGG	-	chr5_1:3886037-3886056	Msa0712040:intron	15.0%
!!	AAAAACAAAAAAATATTGGT+AGG	-	chr5_1:3886072-3886091	Msa0712040:intron	15.0%
!!	AAAACAAAAAAATATTGGTA+GGG	-	chr5_1:3886073-3886092	Msa0712040:intron	15.0%
!!	AATTCATTAATGTGATTATT+TGG	-	chr5_1:3886434-3886453	Msa0712040:CDS	15.0%
!!!	AATTGATTAATCTGTTTTAT+AGG	-	chr5_1:3886780-3886799	Msa0712040:CDS	15.0%
!!	AAAAATACAATTAACAAACA+GGG	+	chr5_1:3886917-3886936	None:intergenic	15.0%
!!	TAAAAATACAATTAACAAAC+AGG	+	chr5_1:3886918-3886937	None:intergenic	15.0%
!!!	TAGATTATTTTATTCTTCTT+TGG	-	chr5_1:3887322-3887341	Msa0712040:intron	15.0%
!!	AAAGTGAAAAGTAAAATAAA+AGG	+	chr5_1:3887438-3887457	None:intergenic	15.0%
!!!	TAGATTATTTTATTCTTCTT+TGG	-	chr5_1:3887322-3887341	Msa0712040:intron	15.0%
!!	AAAGTGAAAAGTAAAATAAA+AGG	+	chr5_1:3887438-3887457	None:intergenic	15.0%
!!!	TAGATTATTTTATTCTTCTT+TGG	-	chr5_1:3887322-3887341	Msa0712040:intron	15.0%
!!	AAAGTGAAAAGTAAAATAAA+AGG	+	chr5_1:3887438-3887457	None:intergenic	15.0%
!!!	TTGTTGGTTAAATTAAAGTT+AGG	-	chr5_1:3885943-3885962	Msa0712040:intron	20.0%
!!!	TGTTGGTTAAATTAAAGTTA+GGG	-	chr5_1:3885944-3885963	Msa0712040:intron	20.0%
!!!	ACTTAATTTTGGGAATTAAT+TGG	-	chr5_1:3885989-3886008	Msa0712040:intron	20.0%
!!	AAAATTGAGTTAGTTAGATT+AGG	+	chr5_1:3886115-3886134	None:intergenic	20.0%
!!	GACTTAAAAAAGTAATTAGA+TGG	-	chr5_1:3886289-3886308	Msa0712040:CDS	20.0%
!!	AAAAAGTAATTAGATGGTAA+TGG	-	chr5_1:3886295-3886314	Msa0712040:CDS	20.0%
!!	AAAAGTAATTAGATGGTAAT+GGG	-	chr5_1:3886296-3886315	Msa0712040:CDS	20.0%
!!!	AATCTGTTTTATAGGATAAA+TGG	-	chr5_1:3886788-3886807	Msa0712040:CDS	20.0%
!!!	AAGTGTTATATTATTGATTC+AGG	+	chr5_1:3886881-3886900	None:intergenic	20.0%
!	AATGGAAATAAATCACAGTT+TGG	+	chr5_1:3885393-3885412	None:intergenic	25.0%
!!!	GTTCTGTTGTTTGATTTTAA+AGG	+	chr5_1:3885516-3885535	None:intergenic	25.0%
!	TTAAAAGAAATCAAACCCTT+CGG	-	chr5_1:3885832-3885851	Msa0712040:intron	25.0%
!!!	GATAAATTTTGGGGATTAAT+GGG	-	chr5_1:3885854-3885873	Msa0712040:intron	25.0%
!	GAAAAGTGATGTGATTATTT+GGG	-	chr5_1:3886327-3886346	Msa0712040:intron	25.0%
!!!	TTAGTTTGTATGAAATCAGT+TGG	-	chr5_1:3886399-3886418	Msa0712040:intron	25.0%
!!	TAGTTTGTATGAAATCAGTT+GGG	-	chr5_1:3886400-3886419	Msa0712040:intron	25.0%
!	TTTATTTACACCACAACATT+CGG	-	chr5_1:3887465-3887484	Msa0712040:intron	25.0%
!	TTTAAAAATACCGAATGTTG+TGG	+	chr5_1:3887478-3887497	None:intergenic	25.0%
!	AAGAGATAAACAATCATGTA+TGG	+	chr5_1:3887535-3887554	None:intergenic	25.0%
!	TTTATTTACACCACAACATT+CGG	-	chr5_1:3887465-3887484	Msa0712040:intron	25.0%
!	TTTAAAAATACCGAATGTTG+TGG	+	chr5_1:3887478-3887497	None:intergenic	25.0%
!	AAGAGATAAACAATCATGTA+TGG	+	chr5_1:3887535-3887554	None:intergenic	25.0%
!	TTTATTTACACCACAACATT+TGG	-	chr5_1:3887465-3887484	Msa0712040:intron	25.0%
!	ATAATGAATACCAAATGTTG+TGG	+	chr5_1:3888054-3888073	None:intergenic	25.0%
	GAAGCCTAAATTAATCACAA+CGG	+	chr5_1:3885432-3885451	None:intergenic	30.0%
!!	TGATTTTCGATTTAGGGTTA+GGG	+	chr5_1:3885600-3885619	None:intergenic	30.0%
!!	TTGATTTTCGATTTAGGGTT+AGG	+	chr5_1:3885601-3885620	None:intergenic	30.0%
!!	AGCGATTGATTTTCGATTTA+GGG	+	chr5_1:3885606-3885625	None:intergenic	30.0%
!!	TAGCGATTGATTTTCGATTT+AGG	+	chr5_1:3885607-3885626	None:intergenic	30.0%
	TCTTTCTCTTTCTCTTTCAA+TGG	-	chr5_1:3885651-3885670	Msa0712040:intron	30.0%
!	AAACCCTTCGGATAAATTTT+GGG	-	chr5_1:3885844-3885863	Msa0712040:intron	30.0%
!!	GGATAAATTTTGGGGATTAA+TGG	-	chr5_1:3885853-3885872	Msa0712040:intron	30.0%
!!	ACTTAATTTTGGGGATCTAT+TGG	-	chr5_1:3885917-3885936	Msa0712040:intron	30.0%
!	GTCTAAAGCAATGTAATTTG+AGG	-	chr5_1:3886267-3886286	Msa0712040:exon	30.0%
!!	TAGATGGTAATGGGATTATT+TGG	-	chr5_1:3886305-3886324	Msa0712040:CDS	30.0%
	GGAAAAGTGATGTGATTATT+TGG	-	chr5_1:3886326-3886345	Msa0712040:intron	30.0%
	AGTTTGTATGAAATCAGTTG+GGG	-	chr5_1:3886401-3886420	Msa0712040:intron	30.0%
!	ACTTTTCTTCTACAGAATAC+AGG	-	chr5_1:3887083-3887102	Msa0712040:intron	30.0%
	AAAATTCCAAAGCAAAGGAA+AGG	+	chr5_1:3887244-3887263	None:intergenic	30.0%
	TATGGAAAATTCCAAAGCAA+AGG	+	chr5_1:3887249-3887268	None:intergenic	30.0%
	AAGAGAGAAACAATCATGTA+TGG	+	chr5_1:3887267-3887286	None:intergenic	30.0%
!!	TTTATTCTTCTTTGGAGCTT+TGG	-	chr5_1:3887330-3887349	Msa0712040:intron	30.0%
!!	TTATTCTTCTTTGGAGCTTT+GGG	-	chr5_1:3887331-3887350	Msa0712040:intron	30.0%
	AAAATTCCAAAGCAAAGGAA+AGG	+	chr5_1:3887244-3887263	None:intergenic	30.0%
	TATGGAAAATTCCAAAGCAA+AGG	+	chr5_1:3887249-3887268	None:intergenic	30.0%
!!	TTTATTCTTCTTTGGAGCTT+TGG	-	chr5_1:3887330-3887349	Msa0712040:intron	30.0%
!!	TTATTCTTCTTTGGAGCTTT+GGG	-	chr5_1:3887331-3887350	Msa0712040:intron	30.0%
	AAAATTCCAAAGCAAAGGAA+AGG	+	chr5_1:3887244-3887263	None:intergenic	30.0%
	TATGGAAAATTCCAAAGCAA+AGG	+	chr5_1:3887249-3887268	None:intergenic	30.0%
!!	TTTATTCTTCTTTGGAGCTT+TGG	-	chr5_1:3887330-3887349	Msa0712040:intron	30.0%
!!	TTATTCTTCTTTGGAGCTTT+GGG	-	chr5_1:3887331-3887350	Msa0712040:intron	30.0%
	GGCTAGTAATCTTGGATAAA+TGG	+	chr5_1:3885411-3885430	None:intergenic	35.0%
	CTAGCCGTTGTGATTAATTT+AGG	-	chr5_1:3885425-3885444	Msa0712040:three_prime_UTR	35.0%
	ACACTCAATCTGTTCTCAAA+AGG	-	chr5_1:3885755-3885774	Msa0712040:intron	35.0%
!	CAAACCCTTCGGATAAATTT+TGG	-	chr5_1:3885843-3885862	Msa0712040:intron	35.0%
!	AACCCTTCGGATAAATTTTG+GGG	-	chr5_1:3885845-3885864	Msa0712040:intron	35.0%
	ATCCCCAAAATTTATCCGAA+GGG	+	chr5_1:3885850-3885869	None:intergenic	35.0%
	AATCCCCAAAATTTATCCGA+AGG	+	chr5_1:3885851-3885870	None:intergenic	35.0%
!!	TGGCTTTGATGGTAAGAAAT+TGG	-	chr5_1:3886188-3886207	Msa0712040:three_prime_UTR	35.0%
	CACAATATATTGTCCTCTTC+AGG	+	chr5_1:3886493-3886512	None:intergenic	35.0%
	AAGAGGACAATATATTGTGC+TGG	-	chr5_1:3886494-3886513	Msa0712040:intron	35.0%
	GACAATATATTGTGCTGGAA+AGG	-	chr5_1:3886499-3886518	Msa0712040:intron	35.0%
!	TCCCAATGAGTATCCTTTTA+AGG	-	chr5_1:3886585-3886604	Msa0712040:CDS	35.0%
	GCCTTAAAAGGATACTCATT+GGG	+	chr5_1:3886589-3886608	None:intergenic	35.0%
	AGCCTTAAAAGGATACTCAT+TGG	+	chr5_1:3886590-3886609	None:intergenic	35.0%
	TTGCCATGCAAATCAACATT+GGG	+	chr5_1:3886646-3886665	None:intergenic	35.0%
	ATTGCCATGCAAATCAACAT+TGG	+	chr5_1:3886647-3886666	None:intergenic	35.0%
	TTTCAAATTTACCTCCTAGC+AGG	+	chr5_1:3886858-3886877	None:intergenic	35.0%
	TTCTACAGAATACAGGAAGA+TGG	-	chr5_1:3887090-3887109	Msa0712040:intron	35.0%
!	TGCTGCTTAAACTTTGATCT+CGG	-	chr5_1:3887135-3887154	Msa0712040:intron	35.0%
	TGATTTCTCTTCTCTATGTC+TGG	-	chr5_1:3887165-3887184	Msa0712040:intron	35.0%
!!	ATCTGCTTTGGAAAAGAGAA+GGG	-	chr5_1:3887193-3887212	Msa0712040:intron	35.0%
	TTTCATCCTTTCCTTTGCTT+TGG	-	chr5_1:3887235-3887254	Msa0712040:intron	35.0%
!!	TATTCTTCTTTGGAGCTTTG+GGG	-	chr5_1:3887332-3887351	Msa0712040:intron	35.0%
	TTTCATCCTTTCCTTTGCTT+TGG	-	chr5_1:3887235-3887254	Msa0712040:intron	35.0%
!!	TATTCTTCTTTGGAGCTTTG+GGG	-	chr5_1:3887332-3887351	Msa0712040:intron	35.0%
	TTTCATCCTTTCCTTTGCTT+TGG	-	chr5_1:3887235-3887254	Msa0712040:intron	35.0%
!!	TATTCTTCTTTGGAGCTTTG+GGG	-	chr5_1:3887332-3887351	Msa0712040:intron	35.0%
	ATCACAACGGCTAGTAATCT+TGG	+	chr5_1:3885419-3885438	None:intergenic	40.0%
!	AACGACGTCGAATTTAAGGT+CGG	+	chr5_1:3885476-3885495	None:intergenic	40.0%
	ACGAAACGACGTCGAATTTA+AGG	+	chr5_1:3885480-3885499	None:intergenic	40.0%
!	AGGGTTAGGGTTTTTGTTGA+AGG	+	chr5_1:3885587-3885606	None:intergenic	40.0%
!	GATTGAGTGTCAACGGATTT+AGG	+	chr5_1:3885745-3885764	None:intergenic	40.0%
	GAGAACAGATTGAGTGTCAA+CGG	+	chr5_1:3885752-3885771	None:intergenic	40.0%
!!!	GGGGATCTATTGGTTTTTGT+TGG	-	chr5_1:3885927-3885946	Msa0712040:intron	40.0%
!!	GTCTGAATTGATGGCTTTGA+TGG	-	chr5_1:3886177-3886196	Msa0712040:three_prime_UTR	40.0%
	GTGATTATTTGGCAGATGAG+TGG	-	chr5_1:3886445-3886464	Msa0712040:CDS	40.0%
!!	TGTATCTGCTTTTCCTGAAG+AGG	-	chr5_1:3886477-3886496	Msa0712040:intron	40.0%
	AGCAAAGACACTGTCTTTGA+AGG	-	chr5_1:3886535-3886554	Msa0712040:intron	40.0%
!!!	GTATCCTTTTAAGGCTCCAA+AGG	-	chr5_1:3886594-3886613	Msa0712040:CDS	40.0%
!!	TTGACCTTTGGAGCCTTAAA+AGG	+	chr5_1:3886601-3886620	None:intergenic	40.0%
!	GTGGTGTCAAATTTGACCTT+TGG	+	chr5_1:3886613-3886632	None:intergenic	40.0%
	TGCCATGCAAATCAACATTG+GGG	+	chr5_1:3886645-3886664	None:intergenic	40.0%
	TTTGCATGGCAATATTTGCC+TGG	-	chr5_1:3886654-3886673	Msa0712040:intron	40.0%
	TATTTGCCTGGACATTCTTC+AGG	-	chr5_1:3886666-3886685	Msa0712040:intron	40.0%
	TCATTACCTGAAGAATGTCC+AGG	+	chr5_1:3886675-3886694	None:intergenic	40.0%
	TTGTCAATTCAAAGCCTGCT+AGG	-	chr5_1:3886841-3886860	Msa0712040:CDS	40.0%
	GAGATCAAAGTTTAAGCAGC+AGG	+	chr5_1:3887136-3887155	None:intergenic	40.0%
!!	GATCTGCTTTGGAAAAGAGA+AGG	-	chr5_1:3887192-3887211	Msa0712040:intron	40.0%
!!	ATTCTTCTTTGGAGCTTTGG+GGG	-	chr5_1:3887333-3887352	Msa0712040:intron	40.0%
!!	ATTCTTCTTTGGAGCTTTGG+GGG	-	chr5_1:3887333-3887352	Msa0712040:intron	40.0%
!!	ATTCTTCTTTGGAGCTTTGG+GGG	-	chr5_1:3887333-3887352	Msa0712040:intron	40.0%
	ATTCGACGTCGTTTCGTGAA+AGG	-	chr5_1:3885483-3885502	Msa0712040:three_prime_UTR	45.0%
!	TGAGTGTCAACGGATTTAGG+CGG	+	chr5_1:3885742-3885761	None:intergenic	45.0%
!!	GTGGGTTGTTGCAATTTTGC+AGG	-	chr5_1:3886149-3886168	Msa0712040:three_prime_UTR	45.0%
	CAGGTTGCAGTCTGAATTGA+TGG	-	chr5_1:3886168-3886187	Msa0712040:three_prime_UTR	45.0%
	TGCTGGAAAGGAACAATAGC+AGG	-	chr5_1:3886511-3886530	Msa0712040:intron	45.0%
	CATGCAAATCAACATTGGGG+TGG	+	chr5_1:3886642-3886661	None:intergenic	45.0%
!!	CACCCCAATGTTGATTTGCA+TGG	-	chr5_1:3886640-3886659	Msa0712040:intron	45.0%
	GTGTCAGTAGCATGTGATGA+TGG	-	chr5_1:3886700-3886719	Msa0712040:intron	45.0%
	TCAATTCAAAGCCTGCTAGG+AGG	-	chr5_1:3886844-3886863	Msa0712040:CDS	45.0%
	TTTAGCGGCGAGCTAATGTT+TGG	+	chr5_1:3886960-3886979	None:intergenic	45.0%
!!	TGTGCTGCTTGTGGATTTAG+CGG	+	chr5_1:3886975-3886994	None:intergenic	45.0%
!!	CAGCTTTGGAGCAATCAAGA+AGG	-	chr5_1:3886993-3887012	Msa0712040:intron	45.0%
	TGTCTGGTTGTGATCTGCTT+TGG	-	chr5_1:3887181-3887200	Msa0712040:intron	45.0%
!!!	TTTTTTAATTTACTTAATTT+TGG	-	chr5_1:3885906-3885925	Msa0712040:intron	5.0%
!!!	TTTTTAATTTACTTAATTTT+GGG	-	chr5_1:3885907-3885926	Msa0712040:intron	5.0%
!!!	TTTTTAATTTACTTAATTTT+GGG	-	chr5_1:3885907-3885926	Msa0712040:intron	5.0%
!!!	ATTTTTTTTTTTTTTTTTTG+TGG	-	chr5_1:3886130-3886149	Msa0712040:three_prime_UTR	5.0%
!!!	TTTTTTTTTTTTTTTTTTGT+GGG	-	chr5_1:3886131-3886150	Msa0712040:three_prime_UTR	5.0%
!	TGTCAACGGATTTAGGCGGA+GGG	+	chr5_1:3885738-3885757	None:intergenic	50.0%
	TGGCAGATGAGTGGAGATTC+TGG	-	chr5_1:3886454-3886473	Msa0712040:intron	50.0%
!	AACATTGGGGTGGAAGCATG+TGG	+	chr5_1:3886632-3886651	None:intergenic	50.0%
	ATCCACAAGCAGCACAGCTT+TGG	-	chr5_1:3886979-3886998	Msa0712040:intron	50.0%
	GGAGGGAGAGGTTGCATTGA+AGG	+	chr5_1:3885721-3885740	None:intergenic	55.0%
!	GTGTCAACGGATTTAGGCGG+AGG	+	chr5_1:3885739-3885758	None:intergenic	55.0%
!!	CTCCAAAGCTGTGCTGCTTG+TGG	+	chr5_1:3886984-3887003	None:intergenic	55.0%
	ACGGATTTAGGCGGAGGGAG+AGG	+	chr5_1:3885733-3885752	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	3885349	3888074	3885349	ID=Msa0712040;Name=Msa0712040
chr5_1	mRNA	3885349	3888074	3885349	ID=Msa0712040-mRNA-1;Parent=Msa0712040;Name=Msa0712040-mRNA-1;_AED=0.07;_eAED=0.07;_QI=321\|1\|1\|1\|0.83\|0.71\|7\|394\|177
chr5_1	exon	3885349	3885540	3885349	ID=Msa0712040-mRNA-1:exon:1489;Parent=Msa0712040-mRNA-1
chr5_1	exon	3886077	3886325	3886077	ID=Msa0712040-mRNA-1:exon:1488;Parent=Msa0712040-mRNA-1
chr5_1	exon	3886409	3886468	3886409	ID=Msa0712040-mRNA-1:exon:1487;Parent=Msa0712040-mRNA-1
chr5_1	exon	3886558	3886621	3886558	ID=Msa0712040-mRNA-1:exon:1486;Parent=Msa0712040-mRNA-1
chr5_1	exon	3886736	3886963	3886736	ID=Msa0712040-mRNA-1:exon:1485;Parent=Msa0712040-mRNA-1
chr5_1	exon	3887225	3887252	3887225	ID=Msa0712040-mRNA-1:exon:1484;Parent=Msa0712040-mRNA-1
chr5_1	exon	3887647	3888074	3887647	ID=Msa0712040-mRNA-1:exon:1483;Parent=Msa0712040-mRNA-1
chr5_1	five_prime_UTR	3887754	3888074	3887754	ID=Msa0712040-mRNA-1:five_prime_utr;Parent=Msa0712040-mRNA-1
chr5_1	CDS	3887647	3887753	3887647	ID=Msa0712040-mRNA-1:cds;Parent=Msa0712040-mRNA-1
chr5_1	CDS	3887225	3887252	3887225	ID=Msa0712040-mRNA-1:cds;Parent=Msa0712040-mRNA-1
chr5_1	CDS	3886736	3886963	3886736	ID=Msa0712040-mRNA-1:cds;Parent=Msa0712040-mRNA-1
chr5_1	CDS	3886558	3886621	3886558	ID=Msa0712040-mRNA-1:cds;Parent=Msa0712040-mRNA-1
chr5_1	CDS	3886409	3886468	3886409	ID=Msa0712040-mRNA-1:cds;Parent=Msa0712040-mRNA-1
chr5_1	CDS	3886279	3886325	3886279	ID=Msa0712040-mRNA-1:cds;Parent=Msa0712040-mRNA-1
chr5_1	three_prime_UTR	3886077	3886278	3886077	ID=Msa0712040-mRNA-1:three_prime_utr;Parent=Msa0712040-mRNA-1
chr5_1	three_prime_UTR	3885349	3885540	3885349	ID=Msa0712040-mRNA-1:three_prime_utr;Parent=Msa0712040-mRNA-1

Gene Sequence

>Msa0712040

ATGGCTAGCGCTAACGTTCAAACTGAAGCTTCTCAAAGCAACATTGCTCCTTCAATGCAACCTCTCCCTCCGCCTAAATCCGTTGACACTCAATCTGTTCTCAAAAGGTTGCAGTCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGTGTATCTGCTTTTCCTGAAGAGGACAATATATTGTGCTGGAAAGGAACAATAGCAGGAAGCAAAGACACTGTCTTTGAAGGAACAGAATACAAATTGTCACTTTCATTTCCCAATGAGTATCCTTTTAAGGCTCCAAAGGTCAAATTTGACACCACATGCTTCCACCCCAATGTTGATTTGCATGGCAATATTTGCCTGGACATTCTTCAGGATAAATGGTCATCTGCTTATGATGTTAGAACAATTCTTTTGTCAATTCAAAGCCTGCTAGGAGAGCCAAACATTAGCTCGCCGCTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATACAGGAAGATGGTTGAGAAGTTGTACAAAGATCCTGCTGCTTAA

Protein sequence

>Msa0712040

MASANVQTEASQSNIAPSMQPLPPPKSVDTQSVLKRLQSELMALMMSGDSGVSAFPEEDNILCWKGTIAGSKDTVFEGTEYKLSLSFPNEYPFKAPKVKFDTTCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEEYRKMVEKLYKDPAA*