Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712660 | XP_003611069.2 | 95.943 | 493 | 7 | 2 | 1 | 480 | 1 | 493 | 0.0 | 986 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712660 | G7KC11 | 95.943 | 493 | 7 | 2 | 1 | 480 | 1 | 493 | 0.0 | 986 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0712660 | Msa0752840 | 0.807051 | 6.105833e-50 | -8.615850e-47 |
| Msa0537360 | Msa0712660 | 0.812686 | 3.742445e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712660 | MtrunA17_Chr8g0387371 | 76.923 | 468 | 85 | 4 | 35 | 479 | 49 | 516 | 0.0 | 761 |
| Msa0712660 | MtrunA17_Chr8g0348511 | 61.618 | 482 | 163 | 5 | 19 | 479 | 8 | 488 | 0.0 | 628 |
| Msa0712660 | MtrunA17_Chr2g0327551 | 64.964 | 411 | 132 | 1 | 81 | 479 | 45 | 455 | 0.0 | 597 |
| Msa0712660 | MtrunA17_Chr4g0030331 | 67.021 | 376 | 124 | 0 | 76 | 451 | 102 | 477 | 0.0 | 577 |
| Msa0712660 | MtrunA17_Chr5g0397301 | 96.194 | 289 | 8 | 2 | 1 | 286 | 1 | 289 | 0.0 | 572 |
| Msa0712660 | MtrunA17_Chr5g0397311 | 92.523 | 214 | 4 | 1 | 279 | 480 | 21 | 234 | 2.63e-145 | 415 |
| Msa0712660 | MtrunA17_Chr7g0239421 | 47.328 | 393 | 190 | 5 | 81 | 457 | 92 | 483 | 4.13e-124 | 371 |
| Msa0712660 | MtrunA17_Chr4g0024001 | 43.029 | 416 | 225 | 5 | 70 | 477 | 63 | 474 | 6.33e-122 | 365 |
| Msa0712660 | MtrunA17_Chr5g0395861 | 43.365 | 422 | 222 | 5 | 71 | 476 | 115 | 535 | 5.65e-121 | 364 |
| Msa0712660 | MtrunA17_Chr3g0112211 | 45.238 | 420 | 198 | 8 | 72 | 477 | 73 | 474 | 8.95e-121 | 362 |
| Msa0712660 | MtrunA17_Chr4g0023991 | 46.875 | 416 | 196 | 10 | 81 | 477 | 63 | 472 | 6.68e-113 | 341 |
| Msa0712660 | MtrunA17_Chr2g0322991 | 43.437 | 419 | 219 | 7 | 76 | 477 | 52 | 469 | 4.55e-100 | 308 |
| Msa0712660 | MtrunA17_Chr7g0248241 | 54.196 | 286 | 117 | 5 | 6 | 279 | 8 | 291 | 3.34e-96 | 293 |
| Msa0712660 | MtrunA17_Chr7g0248231 | 63.095 | 168 | 61 | 1 | 279 | 446 | 3 | 169 | 2.37e-75 | 235 |
| Msa0712660 | MtrunA17_Chr2g0284301 | 59.574 | 47 | 19 | 0 | 221 | 267 | 1 | 47 | 1.46e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712660 | AT4G23490.1 | 67.755 | 490 | 122 | 4 | 26 | 479 | 35 | 524 | 0.0 | 686 |
| Msa0712660 | AT4G11350.1 | 66.529 | 484 | 138 | 4 | 20 | 479 | 22 | 505 | 0.0 | 680 |
| Msa0712660 | AT5G41460.1 | 66.802 | 494 | 124 | 6 | 25 | 479 | 30 | 522 | 0.0 | 679 |
| Msa0712660 | AT1G01570.1 | 55.136 | 477 | 183 | 7 | 28 | 479 | 4 | 474 | 0.0 | 545 |
| Msa0712660 | AT1G01570.2 | 55.136 | 477 | 183 | 7 | 28 | 479 | 35 | 505 | 0.0 | 544 |
| Msa0712660 | AT1G07850.1 | 63.107 | 412 | 139 | 2 | 81 | 479 | 123 | 534 | 0.0 | 532 |
| Msa0712660 | AT4G00295.1 | 53.563 | 435 | 183 | 7 | 31 | 451 | 30 | 459 | 1.10e-164 | 473 |
| Msa0712660 | AT2G37730.1 | 42.886 | 492 | 249 | 10 | 9 | 471 | 14 | 502 | 5.81e-138 | 408 |
| Msa0712660 | AT4G11350.2 | 65.480 | 281 | 83 | 4 | 20 | 288 | 22 | 300 | 1.24e-123 | 363 |
| Msa0712660 | AT4G15240.1 | 44.550 | 422 | 212 | 8 | 70 | 477 | 70 | 483 | 5.16e-120 | 360 |
| Msa0712660 | AT1G33250.1 | 42.439 | 410 | 212 | 5 | 83 | 472 | 131 | 536 | 8.76e-118 | 357 |
| Msa0712660 | AT1G05280.1 | 42.381 | 420 | 218 | 8 | 81 | 477 | 68 | 486 | 9.00e-115 | 347 |
| Msa0712660 | AT1G05280.2 | 44.327 | 379 | 192 | 5 | 81 | 451 | 68 | 435 | 2.11e-108 | 330 |
| Msa0712660 | AT3G11420.1 | 36.596 | 470 | 272 | 8 | 27 | 476 | 40 | 503 | 1.42e-103 | 318 |
| Msa0712660 | AT5G12460.1 | 38.416 | 341 | 193 | 7 | 81 | 417 | 36 | 363 | 1.52e-81 | 259 |
Find 108 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGGTATCCTGGTCTTTA+TGG | 0.131938 | 5_1:+4490279 | Msa0712660:CDS |
| CTTCAAGAACATTTCTTAAT+TGG | 0.163109 | 5_1:+4493830 | Msa0712660:CDS |
| CACCATTCTTCCTTTCTTGT+TGG | 0.218587 | 5_1:-4494464 | None:intergenic |
| TTGTGACGGATAATTTGATT+AGG | 0.320319 | 5_1:+4490091 | Msa0712660:CDS |
| TCCGGAATGCCGATGGAAAA+TGG | 0.320425 | 5_1:+4494008 | Msa0712660:CDS |
| GATGGACCATTTCAGTTTCA+TGG | 0.324965 | 5_1:+4493752 | Msa0712660:CDS |
| GAGTGGTGATTGATGGAAAA+TGG | 0.347760 | 5_1:-4489558 | None:intergenic |
| GCTTCCACTCTTGTGGCATT+CGG | 0.348471 | 5_1:-4493649 | None:intergenic |
| TGACACGGGTGTCGAGTAAC+AGG | 0.350943 | 5_1:-4493895 | None:intergenic |
| AGAAAATGAGAGGAATAGTA+TGG | 0.352306 | 5_1:+4489872 | Msa0712660:CDS |
| CTTCCACTCTTGTGGCATTC+GGG | 0.360822 | 5_1:-4493648 | None:intergenic |
| TGTGACGGATAATTTGATTA+GGG | 0.365212 | 5_1:+4490092 | Msa0712660:CDS |
| TTGCAGCCTCATCAAAACTT+TGG | 0.368767 | 5_1:+4489658 | Msa0712660:CDS |
| GATGTGTATGGGAACCTATT+TGG | 0.375233 | 5_1:+4493556 | Msa0712660:CDS |
| CTGGTGAAAACCGATTTCTT+TGG | 0.375358 | 5_1:-4490352 | None:intergenic |
| GGATGTACGGTGGTTTGTAA+TGG | 0.376772 | 5_1:+4490050 | Msa0712660:CDS |
| ATGTGTATGGGAACCTATTT+GGG | 0.377930 | 5_1:+4493557 | Msa0712660:CDS |
| TGCAGCCTCATCAAAACTTT+GGG | 0.381822 | 5_1:+4489659 | Msa0712660:CDS |
| GGTGGATTTGCAATTAGTTA+TGG | 0.395771 | 5_1:+4490216 | Msa0712660:CDS |
| CTTGTGGCATTCGGGAAGAT+TGG | 0.406308 | 5_1:-4493640 | None:intergenic |
| ATTTGCAATTAGTTATGGTT+TGG | 0.407855 | 5_1:+4490221 | Msa0712660:CDS |
| TTTGAGAGTGTAAATGAAGT+AGG | 0.408544 | 5_1:-4489502 | None:intergenic |
| AGTGATACCAATGGAGTTAC+TGG | 0.408585 | 5_1:-4493595 | None:intergenic |
| TGACCTTGTTTGTTTGTGTA+TGG | 0.409139 | 5_1:-4489970 | None:intergenic |
| CGAGCTTCATTGGTATTGTA+AGG | 0.413132 | 5_1:-4493681 | None:intergenic |
| GGAATGGCTTATGGTGGTGG+TGG | 0.420801 | 5_1:+4490198 | Msa0712660:CDS |
| AACGTTGCGTTTAGGCCTTA+AGG | 0.429698 | 5_1:+4490029 | Msa0712660:CDS |
| GTTTCTGAAACGTTGCGTTT+AGG | 0.432277 | 5_1:+4490021 | Msa0712660:CDS |
| GCTGTTTGCTGCATTGATGC+TGG | 0.432476 | 5_1:-4489583 | None:intergenic |
| GAAAGAACTACATAAAACTA+TGG | 0.434845 | 5_1:+4489688 | Msa0712660:CDS |
| GTTCCACTTACCAAAGAAAT+CGG | 0.436793 | 5_1:+4490342 | Msa0712660:CDS |
| GAGCTGCAAGAAGCCCAAAT+AGG | 0.439253 | 5_1:-4493570 | None:intergenic |
| AAAGCATCGTGTTCCTCATC+CGG | 0.442762 | 5_1:+4493990 | Msa0712660:CDS |
| TTCCATCGGCATTCCGGATG+AGG | 0.443194 | 5_1:-4494003 | None:intergenic |
| GATGTACGGTGGTTTGTAAT+GGG | 0.443910 | 5_1:+4490051 | Msa0712660:CDS |
| ACTCTGCAGCAGTTTCTCCT+TGG | 0.444199 | 5_1:-4494433 | None:intergenic |
| TATGGAATGGCTTATGGTGG+TGG | 0.444530 | 5_1:+4490195 | Msa0712660:CDS |
| CCTGCTGAGTCGAGCTTCAT+TGG | 0.447499 | 5_1:-4493691 | None:intergenic |
| TGATCGAATGCAAGCTTGTA+TGG | 0.456256 | 5_1:+4490308 | Msa0712660:CDS |
| TTGGAACAGTATGATGTGTA+TGG | 0.457109 | 5_1:+4493544 | Msa0712660:intron |
| TTTGAAAGGTAAAACACAAA+AGG | 0.457164 | 5_1:-4493922 | None:intergenic |
| CAATTAAGAAATGTTCTTGA+AGG | 0.458016 | 5_1:-4493829 | None:intergenic |
| AAACCGATTTCTTTGGTAAG+TGG | 0.461290 | 5_1:-4490345 | None:intergenic |
| TGCAGGATCGTTGTATTCAT+AGG | 0.462057 | 5_1:+4490262 | Msa0712660:CDS |
| GCTGGAAGAGTGGTGATTGA+TGG | 0.466330 | 5_1:-4489565 | None:intergenic |
| ATGGACCATTTCAGTTTCAT+GGG | 0.472620 | 5_1:+4493753 | Msa0712660:CDS |
| GTGTGGGATTCACTAAGGTT+GGG | 0.481023 | 5_1:-4489413 | None:intergenic |
| AAAACCCCATGAAACTGAAA+TGG | 0.481667 | 5_1:-4493758 | None:intergenic |
| AGGAAGAATGGTGATGGATG+TGG | 0.482118 | 5_1:+4494474 | Msa0712660:CDS |
| CAAACCACCGTACATCCTTA+AGG | 0.482865 | 5_1:-4490044 | None:intergenic |
| ACAGGTGGTAGACCTTCGTT+CGG | 0.486923 | 5_1:-4489919 | None:intergenic |
| CGTTGTATTCATAGGTATCC+TGG | 0.489757 | 5_1:+4490270 | Msa0712660:CDS |
| TGTGTGGGATTCACTAAGGT+TGG | 0.492478 | 5_1:-4489414 | None:intergenic |
| TGAAGGCATTTCAATTTCGC+GGG | 0.500204 | 5_1:-4493812 | None:intergenic |
| CAAGCTTGTATGGCTGAACT+TGG | 0.501075 | 5_1:+4490318 | Msa0712660:CDS |
| TTCCTCATCCGGAATGCCGA+TGG | 0.506157 | 5_1:+4494001 | Msa0712660:CDS |
| TTGTTGTGTGGGATTCACTA+AGG | 0.511560 | 5_1:-4489418 | None:intergenic |
| GTCCAACAAGAAAGGAAGAA+TGG | 0.512427 | 5_1:+4494462 | Msa0712660:CDS |
| GTGATGAAGTCCAACAAGAA+AGG | 0.513264 | 5_1:+4494454 | Msa0712660:CDS |
| TGTGAAGGTCGTTGTTGTGT+GGG | 0.521879 | 5_1:-4489429 | None:intergenic |
| GAGCTCCGGCATGTAGTGTT+CGG | 0.524859 | 5_1:+4489633 | Msa0712660:CDS |
| TTGAAGCGCTTCCACTCTTG+TGG | 0.527472 | 5_1:-4493656 | None:intergenic |
| GATGTGGGTATATGTAAAGA+TGG | 0.530359 | 5_1:+4494490 | Msa0712660:CDS |
| TTGAAGGCATTTCAATTTCG+CGG | 0.531589 | 5_1:-4493813 | None:intergenic |
| CTTCTAAAAGAACCGAGCTC+CGG | 0.536873 | 5_1:+4489619 | Msa0712660:CDS |
| AATATATTTGGCAGGCTCCA+AGG | 0.539308 | 5_1:+4494416 | Msa0712660:intron |
| CAAGAAAGGAAGAATGGTGA+TGG | 0.543356 | 5_1:+4494468 | Msa0712660:CDS |
| ATGTGAAGGTCGTTGTTGTG+TGG | 0.544002 | 5_1:-4489430 | None:intergenic |
| AATGAGAGGAATAGTATGGA+TGG | 0.544772 | 5_1:+4489876 | Msa0712660:CDS |
| GTTTAGGCCTTAAGGATGTA+CGG | 0.545476 | 5_1:+4490037 | Msa0712660:CDS |
| TTTGCTGTTCAGATATTTCG+CGG | 0.549173 | 5_1:+4493778 | Msa0712660:CDS |
| ACACAAAAGGCTTCTGACAC+GGG | 0.550493 | 5_1:-4493909 | None:intergenic |
| ATGGTTGCAATTGCTTGAAG+TGG | 0.552924 | 5_1:-4489532 | None:intergenic |
| AACACAAAAGGCTTCTGACA+CGG | 0.555456 | 5_1:-4493910 | None:intergenic |
| GGAAGAATGGTGATGGATGT+GGG | 0.564471 | 5_1:+4494475 | Msa0712660:CDS |
| GTTACGACAAAGAAAAGAGA+TGG | 0.565849 | 5_1:+4493734 | Msa0712660:CDS |
| GTATGGAAAATTTGATGTGT+CGG | 0.566318 | 5_1:-4489953 | None:intergenic |
| AAAAGCTATAGTGAAAATGC+AGG | 0.567493 | 5_1:+4490245 | Msa0712660:CDS |
| ACTTCAAGCAATTGCAACCA+TGG | 0.573920 | 5_1:+4489534 | Msa0712660:CDS |
| GAACACTACATGCCGGAGCT+CGG | 0.575438 | 5_1:-4489631 | None:intergenic |
| AGCTCATCCAGTAACTCCAT+TGG | 0.575487 | 5_1:+4493588 | Msa0712660:CDS |
| CCAATGAAGCTCGACTCAGC+AGG | 0.595651 | 5_1:+4493691 | Msa0712660:CDS |
| TCTTATGGAATGGCTTATGG+TGG | 0.598726 | 5_1:+4490192 | Msa0712660:CDS |
| ACAACTTTGTCAAGAGCAGA+AGG | 0.600062 | 5_1:-4494036 | None:intergenic |
| CTGCATTGATGCTGGAAGAG+TGG | 0.601584 | 5_1:-4489575 | None:intergenic |
| ACTCAGCAAAGATTATGCTA+TGG | 0.602438 | 5_1:+4489457 | Msa0712660:CDS |
| AGTAGGTTAAAGAAACAGCT+AGG | 0.602811 | 5_1:-4489485 | None:intergenic |
| TACAATGAGAAGAAAATGAG+AGG | 0.603290 | 5_1:+4489862 | Msa0712660:CDS |
| TTGGCTCAACCACGTCAAGA+TGG | 0.607999 | 5_1:-4493621 | None:intergenic |
| AGATGGTGCAGTGATACCAA+TGG | 0.614001 | 5_1:-4493604 | None:intergenic |
| CTTCCCGAATGCCACAAGAG+TGG | 0.621715 | 5_1:+4493645 | Msa0712660:CDS |
| TTGCTGTTCAGATATTTCGC+GGG | 0.625108 | 5_1:+4493779 | Msa0712660:CDS |
| CAATTCCGAACACTACATGC+CGG | 0.628782 | 5_1:-4489638 | None:intergenic |
| TGGACCATTTCAGTTTCATG+GGG | 0.633074 | 5_1:+4493754 | Msa0712660:CDS |
| TTTCCATACACAAACAAACA+AGG | 0.634411 | 5_1:+4489967 | Msa0712660:CDS |
| TGGAACAGTATGATGTGTAT+GGG | 0.639733 | 5_1:+4493545 | Msa0712660:intron |
| TGTAATGGGAGACGACGACA+CGG | 0.642168 | 5_1:+4490065 | Msa0712660:CDS |
| TCATCAGAACCATAAAGACC+AGG | 0.654422 | 5_1:-4490288 | None:intergenic |
| GACACGGGTGTCGAGTAACA+GGG | 0.666804 | 5_1:-4493894 | None:intergenic |
| GAAGGCATTTCAATTTCGCG+GGG | 0.666864 | 5_1:-4493811 | None:intergenic |
| GTGAGATTCTAATCGCGGAA+CGG | 0.687149 | 5_1:-4489993 | None:intergenic |
| GGGTATATGTAAAGATGGTG+AGG | 0.687530 | 5_1:+4494495 | Msa0712660:CDS |
| AATGCGTGAGATTCTAATCG+CGG | 0.693498 | 5_1:-4489998 | None:intergenic |
| GTGAAAACAAATCCGAACGA+AGG | 0.703223 | 5_1:+4489907 | Msa0712660:CDS |
| TTTGCTGAGTGTGAATGTGA+AGG | 0.711752 | 5_1:-4489444 | None:intergenic |
| TAGGCCTTAAGGATGTACGG+TGG | 0.716011 | 5_1:+4490040 | Msa0712660:CDS |
| ATCACTGCACCATCTTGACG+TGG | 0.717319 | 5_1:+4493612 | Msa0712660:CDS |
| GATTGATGGAAAATGGACCA+TGG | 0.742814 | 5_1:-4489551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATATATATATAGTGT+CGG | + | chr5_1:4490580-4490599 | Msa0712660:intron | 10.0% |
| !!! | TTTAATTAAGTTATTTTTTG+AGG | - | chr5_1:4490654-4490673 | None:intergenic | 10.0% |
| !!! | TAAAATTGCAAATTTTTAAA+TGG | - | chr5_1:4491302-4491321 | None:intergenic | 10.0% |
| !! | ATTATAATATATATTTCCTA+TGG | - | chr5_1:4491705-4491724 | None:intergenic | 10.0% |
| !!! | TCATGAATAATATTTTTTTT+GGG | - | chr5_1:4492728-4492747 | None:intergenic | 10.0% |
| !!! | TTCATGAATAATATTTTTTT+TGG | - | chr5_1:4492729-4492748 | None:intergenic | 10.0% |
| !! | ATTGATATATTTATTTGTAT+TGG | + | chr5_1:4492862-4492881 | Msa0712660:intron | 10.0% |
| !!! | AAAATTGGATAATTTTTTTA+AGG | + | chr5_1:4493220-4493239 | Msa0712660:intron | 10.0% |
| !! | ACCTAAAAAATTATAATTTA+TGG | + | chr5_1:4493248-4493267 | Msa0712660:intron | 10.0% |
| !! | CCTAAAAAATTATAATTTAT+GGG | + | chr5_1:4493249-4493268 | Msa0712660:intron | 10.0% |
| !!! | TTTTGTTTTTCTAATAATGT+TGG | - | chr5_1:4489368-4489387 | None:intergenic | 15.0% |
| !!! | TGATTCAACTTATTATTTTT+TGG | + | chr5_1:4489829-4489848 | Msa0712660:intron | 15.0% |
| !!! | ATAAGCAGTTTTATTATATT+GGG | + | chr5_1:4490133-4490152 | Msa0712660:CDS | 15.0% |
| !!! | CAGAATATATATTTTTCTTA+TGG | + | chr5_1:4490177-4490196 | Msa0712660:CDS | 15.0% |
| !!! | TATATATTTTTCTTATGGAA+TGG | + | chr5_1:4490182-4490201 | Msa0712660:CDS | 15.0% |
| !! | TATATAATAAATTCATTTCC+CGG | - | chr5_1:4490570-4490589 | None:intergenic | 15.0% |
| !! | TGAATGAATAAAATTGATTA+AGG | - | chr5_1:4490889-4490908 | None:intergenic | 15.0% |
| !! | TGTATATTAGTAGAAAAATA+CGG | - | chr5_1:4491341-4491360 | None:intergenic | 15.0% |
| !!! | CATGAATAATATTTTTTTTG+GGG | - | chr5_1:4492727-4492746 | None:intergenic | 15.0% |
| !! | AAAAAATATTATTCATGAAG+TGG | + | chr5_1:4492730-4492749 | Msa0712660:intron | 15.0% |
| !!! | TTTTGCAACTAAATTTATTT+GGG | - | chr5_1:4492805-4492824 | None:intergenic | 15.0% |
| !!! | TTTTTGCAACTAAATTTATT+TGG | - | chr5_1:4492806-4492825 | None:intergenic | 15.0% |
| !!! | ATAATTTTTATTGTTGAAAG+AGG | - | chr5_1:4492925-4492944 | None:intergenic | 15.0% |
| !! | ATAATCATAGACAAATTAAA+TGG | + | chr5_1:4492952-4492971 | Msa0712660:intron | 15.0% |
| !!! | CTTTTCAAATGTAAATAAAT+AGG | - | chr5_1:4493000-4493019 | None:intergenic | 15.0% |
| !! | TAATCTCTAACAAAAAATTA+AGG | - | chr5_1:4493145-4493164 | None:intergenic | 15.0% |
| !!! | ATTTTACAAAAAAAACAAAG+TGG | - | chr5_1:4493183-4493202 | None:intergenic | 15.0% |
| !! | TAAAAAACTAAGACAAAAAT+TGG | + | chr5_1:4493205-4493224 | Msa0712660:intron | 15.0% |
| !!! | CCCATAAATTATAATTTTTT+AGG | - | chr5_1:4493252-4493271 | None:intergenic | 15.0% |
| !! | AAAAAAATCTTCTTTATAGT+TGG | + | chr5_1:4493316-4493335 | Msa0712660:intron | 15.0% |
| !! | ATTAATTAAACAGATTACAA+GGG | - | chr5_1:4493430-4493449 | None:intergenic | 15.0% |
| !! | AATTAATTAAACAGATTACA+AGG | - | chr5_1:4493431-4493450 | None:intergenic | 15.0% |
| !! | AATTAGTTGAATATTGTTTA+AGG | + | chr5_1:4494124-4494143 | Msa0712660:intron | 15.0% |
| !!! | TTAATGTTACTTAATTTCTT+TGG | + | chr5_1:4494375-4494394 | Msa0712660:intron | 15.0% |
| !! | GCTCATATATTAAATATATT+TGG | + | chr5_1:4494404-4494423 | Msa0712660:intron | 15.0% |
| !! | ATATATTAAATATATTTGGC+AGG | + | chr5_1:4494408-4494427 | Msa0712660:intron | 15.0% |
| !!! | CATAAGCAGTTTTATTATAT+TGG | + | chr5_1:4490132-4490151 | Msa0712660:CDS | 20.0% |
| !! | ATATAATAAATTCATTTCCC+GGG | - | chr5_1:4490569-4490588 | None:intergenic | 20.0% |
| !! | ATTAAAAAAATAGAGTCTAG+TGG | - | chr5_1:4490614-4490633 | None:intergenic | 20.0% |
| !!! | AAGAGGGTATAATTTTTATT+TGG | - | chr5_1:4490835-4490854 | None:intergenic | 20.0% |
| !!! | AAATACTTAGTTGCATTTTT+CGG | - | chr5_1:4491879-4491898 | None:intergenic | 20.0% |
| !!! | TTAGCCTTTCTTTATTAATT+AGG | + | chr5_1:4492183-4492202 | Msa0712660:intron | 20.0% |
| !!! | TTTAATTTCTCAGTTCTTTT+TGG | + | chr5_1:4492221-4492240 | Msa0712660:intron | 20.0% |
| !! | ATACCAATATGAAAATTTGA+CGG | - | chr5_1:4492654-4492673 | None:intergenic | 20.0% |
| !!! | AATTTTCATATTGGTATGAT+AGG | + | chr5_1:4492657-4492676 | Msa0712660:intron | 20.0% |
| !! | AGCTCAATGTTTATTATTTA+GGG | - | chr5_1:4492780-4492799 | None:intergenic | 20.0% |
| !! | TAGCTCAATGTTTATTATTT+AGG | - | chr5_1:4492781-4492800 | None:intergenic | 20.0% |
| !! | TTTGCAACTAAATTTATTTG+GGG | - | chr5_1:4492804-4492823 | None:intergenic | 20.0% |
| !! | AGACAATTATTGATGAAATT+GGG | + | chr5_1:4493043-4493062 | Msa0712660:intron | 20.0% |
| !! | GACTAAAATTAACAAATCTT+AGG | - | chr5_1:4493123-4493142 | None:intergenic | 20.0% |
| !!! | AATTGAATTTAGCTTTTGAA+AGG | - | chr5_1:4493939-4493958 | None:intergenic | 20.0% |
| ! | GAAAGAACTACATAAAACTA+TGG | + | chr5_1:4489688-4489707 | Msa0712660:CDS | 25.0% |
| !!! | TATTATTTTTTGGCGTAAAC+AGG | + | chr5_1:4489839-4489858 | Msa0712660:intron | 25.0% |
| ! | ATTTGCAATTAGTTATGGTT+TGG | + | chr5_1:4490221-4490240 | Msa0712660:CDS | 25.0% |
| ! | ATAATCAATAATTACGTACC+TGG | - | chr5_1:4490374-4490393 | None:intergenic | 25.0% |
| ! | CTAACAGGAAAAAAGAAAAA+TGG | - | chr5_1:4490509-4490528 | None:intergenic | 25.0% |
| !! | CATTTTTCTTTTTTCCTGTT+AGG | + | chr5_1:4490507-4490526 | Msa0712660:intron | 25.0% |
| ! | TATAATAAATTCATTTCCCG+GGG | - | chr5_1:4490568-4490587 | None:intergenic | 25.0% |
| ! | TAGAATTCCGAATTTGAATT+TGG | + | chr5_1:4490731-4490750 | Msa0712660:intron | 25.0% |
| ! | ACTGAAATAAATACACATTG+AGG | - | chr5_1:4490774-4490793 | None:intergenic | 25.0% |
| ! | CAATGTGTATTTATTTCAGT+AGG | + | chr5_1:4490774-4490793 | Msa0712660:intron | 25.0% |
| ! | AATAAAAGAAATCACGAAGA+GGG | - | chr5_1:4490851-4490870 | None:intergenic | 25.0% |
| ! | TTTAAATGGATCATCTATTG+CGG | - | chr5_1:4491288-4491307 | None:intergenic | 25.0% |
| ! | AAATACGGTCAAAATAAGTT+AGG | - | chr5_1:4491326-4491345 | None:intergenic | 25.0% |
| ! | GCTGAACAAATCTAATTAAT+AGG | - | chr5_1:4491796-4491815 | None:intergenic | 25.0% |
| !! | ATAAACACATCCTTTTACAT+AGG | + | chr5_1:4491913-4491932 | Msa0712660:intron | 25.0% |
| !! | TAAACACATCCTTTTACATA+GGG | + | chr5_1:4491914-4491933 | Msa0712660:intron | 25.0% |
| !! | AGCTTTTATATATTAGCACT+TGG | - | chr5_1:4492123-4492142 | None:intergenic | 25.0% |
| ! | TGCACCTAATTAATAAAGAA+AGG | - | chr5_1:4492190-4492209 | None:intergenic | 25.0% |
| !! | ATTTTCAACAAAAGAAGACA+TGG | - | chr5_1:4492297-4492316 | None:intergenic | 25.0% |
| !! | ACCAATATACTTAGACTTTT+TGG | + | chr5_1:4492555-4492574 | Msa0712660:intron | 25.0% |
| ! | TCCAAAAAGTCTAAGTATAT+TGG | - | chr5_1:4492559-4492578 | None:intergenic | 25.0% |
| ! | TACCAATATGAAAATTTGAC+GGG | - | chr5_1:4492653-4492672 | None:intergenic | 25.0% |
| !!! | TTGTATTGGTTTGATACTTT+CGG | + | chr5_1:4492876-4492895 | Msa0712660:intron | 25.0% |
| ! | CAGACAATTATTGATGAAAT+TGG | + | chr5_1:4493042-4493061 | Msa0712660:intron | 25.0% |
| ! | TTGAATATGTGCATACAAAT+TGG | + | chr5_1:4493399-4493418 | Msa0712660:intron | 25.0% |
| ! | CAATTAAGAAATGTTCTTGA+AGG | - | chr5_1:4493832-4493851 | None:intergenic | 25.0% |
| ! | CTTCAAGAACATTTCTTAAT+TGG | + | chr5_1:4493830-4493849 | Msa0712660:CDS | 25.0% |
| ! | TTTGAAAGGTAAAACACAAA+AGG | - | chr5_1:4493925-4493944 | None:intergenic | 25.0% |
| ! | TTTGAGAGTGTAAATGAAGT+AGG | - | chr5_1:4489505-4489524 | None:intergenic | 30.0% |
| TACAATGAGAAGAAAATGAG+AGG | + | chr5_1:4489862-4489881 | Msa0712660:CDS | 30.0% | |
| AGAAAATGAGAGGAATAGTA+TGG | + | chr5_1:4489872-4489891 | Msa0712660:CDS | 30.0% | |
| GTATGGAAAATTTGATGTGT+CGG | - | chr5_1:4489956-4489975 | None:intergenic | 30.0% | |
| TTTCCATACACAAACAAACA+AGG | + | chr5_1:4489967-4489986 | Msa0712660:CDS | 30.0% | |
| !! | TTGTGACGGATAATTTGATT+AGG | + | chr5_1:4490091-4490110 | Msa0712660:CDS | 30.0% |
| !! | TGTGACGGATAATTTGATTA+GGG | + | chr5_1:4490092-4490111 | Msa0712660:CDS | 30.0% |
| ! | TTTTCTTATGGAATGGCTTA+TGG | + | chr5_1:4490189-4490208 | Msa0712660:CDS | 30.0% |
| AAAAGCTATAGTGAAAATGC+AGG | + | chr5_1:4490245-4490264 | Msa0712660:CDS | 30.0% | |
| AAAATGGAAAGTTCACTCAA+GGG | - | chr5_1:4490493-4490512 | None:intergenic | 30.0% | |
| AAAAATGGAAAGTTCACTCA+AGG | - | chr5_1:4490494-4490513 | None:intergenic | 30.0% | |
| ATAATAAATTCATTTCCCGG+GGG | - | chr5_1:4490567-4490586 | None:intergenic | 30.0% | |
| TGTTGGTCCAAATTCAAATT+CGG | - | chr5_1:4490741-4490760 | None:intergenic | 30.0% | |
| GAAATAAATACACATTGAGG+AGG | - | chr5_1:4490771-4490790 | None:intergenic | 30.0% | |
| CAATAAAAGAAATCACGAAG+AGG | - | chr5_1:4490852-4490871 | None:intergenic | 30.0% | |
| ! | CTCTTCGTGATTTCTTTTAT+TGG | + | chr5_1:4490850-4490869 | Msa0712660:intron | 30.0% |
| !!! | AACTCTTTTTTGTGGATGTA+GGG | - | chr5_1:4490978-4490997 | None:intergenic | 30.0% |
| TACATCCACAAAAAAGAGTT+CGG | + | chr5_1:4490978-4490997 | Msa0712660:intron | 30.0% | |
| !!! | ATAATCCGAACTCTTTTTTG+TGG | - | chr5_1:4490986-4491005 | None:intergenic | 30.0% |
| ACATAGTAGTCTATCAAGAT+CGG | - | chr5_1:4491213-4491232 | None:intergenic | 30.0% | |
| TGACAACATGGAATAATGAA+GGG | + | chr5_1:4491246-4491265 | Msa0712660:intron | 30.0% | |
| TTAAATGGATCATCTATTGC+GGG | - | chr5_1:4491287-4491306 | None:intergenic | 30.0% | |
| TTAAGCTCAAAGTTATGCAT+TGG | + | chr5_1:4491462-4491481 | Msa0712660:intron | 30.0% | |
| ATCAACTGTGTCAAGTATTA+TGG | + | chr5_1:4491498-4491517 | Msa0712660:intron | 30.0% | |
| TCAACTGTGTCAAGTATTAT+GGG | + | chr5_1:4491499-4491518 | Msa0712660:intron | 30.0% | |
| ATAAGCAGAAGAAAATCCAT+AGG | + | chr5_1:4491686-4491705 | Msa0712660:intron | 30.0% | |
| GAAACTTGAGTGAATAGAAT+AGG | - | chr5_1:4491969-4491988 | None:intergenic | 30.0% | |
| !! | TAATGTTTTTCGACCAAACT+AGG | + | chr5_1:4492152-4492171 | Msa0712660:intron | 30.0% |
| GCTAAATAAAAGACCTAGTT+TGG | - | chr5_1:4492168-4492187 | None:intergenic | 30.0% | |
| TGAAAATAGAAGTCTCACAT+AGG | + | chr5_1:4492310-4492329 | Msa0712660:intron | 30.0% | |
| CGATACAAAAAGTCAATACA+TGG | + | chr5_1:4492404-4492423 | Msa0712660:intron | 30.0% | |
| TGAAAATAGAAGTTTCACGT+TGG | + | chr5_1:4492487-4492506 | Msa0712660:intron | 30.0% | |
| AAAAGAGTTTATAAGCAACG+AGG | + | chr5_1:4492526-4492545 | Msa0712660:intron | 30.0% | |
| TTTGTTTAAGTGTCTAAGCT+TGG | - | chr5_1:4492592-4492611 | None:intergenic | 30.0% | |
| !!! | ATGAAAATTTGACGGGTTTT+AGG | - | chr5_1:4492646-4492665 | None:intergenic | 30.0% |
| ! | AACCCGTCAAATTTTCATAT+TGG | + | chr5_1:4492648-4492667 | Msa0712660:intron | 30.0% |
| GGTCAGTATGTATTTATATC+CGG | + | chr5_1:4492751-4492770 | Msa0712660:intron | 30.0% | |
| ! | TGTTTATTATTTAGGGTAGC+CGG | - | chr5_1:4492773-4492792 | None:intergenic | 30.0% |
| TTACTAGTTCGAAATAGTGT+AGG | + | chr5_1:4494164-4494183 | Msa0712660:intron | 30.0% | |
| AAAACACACTCAAAACAAGT+TGG | - | chr5_1:4494302-4494321 | None:intergenic | 30.0% | |
| !!! | ACTTGTTTTGAGTGTGTTTT+AGG | + | chr5_1:4494302-4494321 | Msa0712660:intron | 30.0% |
| TAACTTCCAAAACCTAATTG+TGG | + | chr5_1:4494335-4494354 | Msa0712660:intron | 30.0% | |
| ! | ATGAAACCACAATTAGGTTT+TGG | - | chr5_1:4494344-4494363 | None:intergenic | 30.0% |
| CAACATATGAAACCACAATT+AGG | - | chr5_1:4494350-4494369 | None:intergenic | 30.0% | |
| ACTCAGCAAAGATTATGCTA+TGG | + | chr5_1:4489457-4489476 | Msa0712660:CDS | 35.0% | |
| AGTAGGTTAAAGAAACAGCT+AGG | - | chr5_1:4489488-4489507 | None:intergenic | 35.0% | |
| !! | GGTTCTTTTAGAAGAAGAAG+TGG | - | chr5_1:4489613-4489632 | None:intergenic | 35.0% |
| !! | TTGTTCCCAAAGTTTTGATG+AGG | - | chr5_1:4489667-4489686 | None:intergenic | 35.0% |
| AATGAGAGGAATAGTATGGA+TGG | + | chr5_1:4489876-4489895 | Msa0712660:CDS | 35.0% | |
| ! | TGACCTTGTTTGTTTGTGTA+TGG | - | chr5_1:4489973-4489992 | None:intergenic | 35.0% |
| ! | GGTGGATTTGCAATTAGTTA+TGG | + | chr5_1:4490216-4490235 | Msa0712660:CDS | 35.0% |
| GTTCCACTTACCAAAGAAAT+CGG | + | chr5_1:4490342-4490361 | Msa0712660:CDS | 35.0% | |
| ! | AAACCGATTTCTTTGGTAAG+TGG | - | chr5_1:4490348-4490367 | None:intergenic | 35.0% |
| ! | GTCTTTTATTGTGCATGTGT+AGG | + | chr5_1:4490441-4490460 | Msa0712660:intron | 35.0% |
| TGTAGGATTAAGACATGACT+TGG | + | chr5_1:4490458-4490477 | Msa0712660:intron | 35.0% | |
| GTAGGATTAAGACATGACTT+GGG | + | chr5_1:4490459-4490478 | Msa0712660:intron | 35.0% | |
| !!! | TTCTTTTTTCCTGTTAGGAG+TGG | + | chr5_1:4490512-4490531 | Msa0712660:intron | 35.0% |
| !!! | TCTTTTTTCCTGTTAGGAGT+GGG | + | chr5_1:4490513-4490532 | Msa0712660:intron | 35.0% |
| CAAAATGCTGTAAAAGTTGG+CGG | - | chr5_1:4490542-4490561 | None:intergenic | 35.0% | |
| GGACAAAATGCTGTAAAAGT+TGG | - | chr5_1:4490545-4490564 | None:intergenic | 35.0% | |
| TAATAAATTCATTTCCCGGG+GGG | - | chr5_1:4490566-4490585 | None:intergenic | 35.0% | |
| TCTCAACGTGTACAATCTAA+TGG | + | chr5_1:4490684-4490703 | Msa0712660:intron | 35.0% | |
| ATTGAGGAGGAAAAATGTGT+TGG | - | chr5_1:4490758-4490777 | None:intergenic | 35.0% | |
| TTATTTGGCTATTGAGCTAG+TGG | - | chr5_1:4490820-4490839 | None:intergenic | 35.0% | |
| !! | CGTGATTTCTTTTATTGGCT+CGG | + | chr5_1:4490855-4490874 | Msa0712660:intron | 35.0% |
| !!! | GAACTCTTTTTTGTGGATGT+AGG | - | chr5_1:4490979-4490998 | None:intergenic | 35.0% |
| TGATATGACAAGTGACAACA+TGG | + | chr5_1:4491234-4491253 | Msa0712660:intron | 35.0% | |
| GTGACAACATGGAATAATGA+AGG | + | chr5_1:4491245-4491264 | Msa0712660:intron | 35.0% | |
| GACAACATGGAATAATGAAG+GGG | + | chr5_1:4491247-4491266 | Msa0712660:intron | 35.0% | |
| ATCTGAGTTATAACTGCAGA+GGG | - | chr5_1:4491637-4491656 | None:intergenic | 35.0% | |
| !! | TTAGATTTTGACCCAGAGAA+GGG | - | chr5_1:4491663-4491682 | None:intergenic | 35.0% |
| !! | TTTAGATTTTGACCCAGAGA+AGG | - | chr5_1:4491664-4491683 | None:intergenic | 35.0% |
| !! | ACCATTTCTAGTGCAATTCA+TGG | + | chr5_1:4492007-4492026 | Msa0712660:intron | 35.0% |
| TCCATGAATTGCACTAGAAA+TGG | - | chr5_1:4492011-4492030 | None:intergenic | 35.0% | |
| TGGTTTAATCAGAGTGATCT+TGG | + | chr5_1:4492241-4492260 | Msa0712660:intron | 35.0% | |
| ATCGAGATATGAGTACTCTT+TGG | - | chr5_1:4492388-4492407 | None:intergenic | 35.0% | |
| ATATTGGTATGATAGGAGTC+AGG | + | chr5_1:4492664-4492683 | Msa0712660:intron | 35.0% | |
| TATTGGTATGATAGGAGTCA+GGG | + | chr5_1:4492665-4492684 | Msa0712660:intron | 35.0% | |
| !!! | TATTTTTTTTGGGGTAGCCA+AGG | - | chr5_1:4492718-4492737 | None:intergenic | 35.0% |
| AATCGCTATTTAGAAACGCT+GGG | - | chr5_1:4493087-4493106 | None:intergenic | 35.0% | |
| AAATCGCTATTTAGAAACGC+TGG | - | chr5_1:4493088-4493107 | None:intergenic | 35.0% | |
| CTCGCAAAAAATTTATGCAG+GGG | - | chr5_1:4493342-4493361 | None:intergenic | 35.0% | |
| GCTCGCAAAAAATTTATGCA+GGG | - | chr5_1:4493343-4493362 | None:intergenic | 35.0% | |
| AGCTCGCAAAAAATTTATGC+AGG | - | chr5_1:4493344-4493363 | None:intergenic | 35.0% | |
| AATAGTCCATGTGTGTTTCT+TGG | + | chr5_1:4493525-4493544 | Msa0712660:intron | 35.0% | |
| TTGGAACAGTATGATGTGTA+TGG | + | chr5_1:4493544-4493563 | Msa0712660:intron | 35.0% | |
| TGGAACAGTATGATGTGTAT+GGG | + | chr5_1:4493545-4493564 | Msa0712660:intron | 35.0% | |
| ATGTGTATGGGAACCTATTT+GGG | + | chr5_1:4493557-4493576 | Msa0712660:CDS | 35.0% | |
| ! | CTTTTCTTTGTCGTAACAGA+TGG | - | chr5_1:4493731-4493750 | None:intergenic | 35.0% |
| GTTACGACAAAGAAAAGAGA+TGG | + | chr5_1:4493734-4493753 | Msa0712660:CDS | 35.0% | |
| ATGGACCATTTCAGTTTCAT+GGG | + | chr5_1:4493753-4493772 | Msa0712660:CDS | 35.0% | |
| AAAACCCCATGAAACTGAAA+TGG | - | chr5_1:4493761-4493780 | None:intergenic | 35.0% | |
| !! | TTTGCTGTTCAGATATTTCG+CGG | + | chr5_1:4493778-4493797 | Msa0712660:CDS | 35.0% |
| !! | TTGAAGGCATTTCAATTTCG+CGG | - | chr5_1:4493816-4493835 | None:intergenic | 35.0% |
| !!! | AAGGATTAGCCATTTTCCAT+CGG | - | chr5_1:4494020-4494039 | None:intergenic | 35.0% |
| GTTCGAAATAGTGTAGGATA+CGG | + | chr5_1:4494170-4494189 | Msa0712660:intron | 35.0% | |
| GATGTGGGTATATGTAAAGA+TGG | + | chr5_1:4494490-4494509 | Msa0712660:CDS | 35.0% | |
| TTGTTGTGTGGGATTCACTA+AGG | - | chr5_1:4489421-4489440 | None:intergenic | 40.0% | |
| TTTGCTGAGTGTGAATGTGA+AGG | - | chr5_1:4489447-4489466 | None:intergenic | 40.0% | |
| ATGGTTGCAATTGCTTGAAG+TGG | - | chr5_1:4489535-4489554 | None:intergenic | 40.0% | |
| ACTTCAAGCAATTGCAACCA+TGG | + | chr5_1:4489534-4489553 | Msa0712660:CDS | 40.0% | |
| GATTGATGGAAAATGGACCA+TGG | - | chr5_1:4489554-4489573 | None:intergenic | 40.0% | |
| GAGTGGTGATTGATGGAAAA+TGG | - | chr5_1:4489561-4489580 | None:intergenic | 40.0% | |
| TTGCAGCCTCATCAAAACTT+TGG | + | chr5_1:4489658-4489677 | Msa0712660:CDS | 40.0% | |
| TGCAGCCTCATCAAAACTTT+GGG | + | chr5_1:4489659-4489678 | Msa0712660:CDS | 40.0% | |
| ! | CAATCAGACGATTAGCTAGT+CGG | - | chr5_1:4489751-4489770 | None:intergenic | 40.0% |
| GTCAGTCGATTGTAGTCAAT+TGG | + | chr5_1:4489798-4489817 | Msa0712660:intron | 40.0% | |
| GTGAAAACAAATCCGAACGA+AGG | + | chr5_1:4489907-4489926 | Msa0712660:CDS | 40.0% | |
| AATGCGTGAGATTCTAATCG+CGG | - | chr5_1:4490001-4490020 | None:intergenic | 40.0% | |
| !! | GTTTCTGAAACGTTGCGTTT+AGG | + | chr5_1:4490021-4490040 | Msa0712660:CDS | 40.0% |
| GTTTAGGCCTTAAGGATGTA+CGG | + | chr5_1:4490037-4490056 | Msa0712660:CDS | 40.0% | |
| ! | GATGTACGGTGGTTTGTAAT+GGG | + | chr5_1:4490051-4490070 | Msa0712660:CDS | 40.0% |
| TCTTATGGAATGGCTTATGG+TGG | + | chr5_1:4490192-4490211 | Msa0712660:CDS | 40.0% | |
| TGCAGGATCGTTGTATTCAT+AGG | + | chr5_1:4490262-4490281 | Msa0712660:CDS | 40.0% | |
| CGTTGTATTCATAGGTATCC+TGG | + | chr5_1:4490270-4490289 | Msa0712660:CDS | 40.0% | |
| ! | CATAGGTATCCTGGTCTTTA+TGG | + | chr5_1:4490279-4490298 | Msa0712660:CDS | 40.0% |
| TCATCAGAACCATAAAGACC+AGG | - | chr5_1:4490291-4490310 | None:intergenic | 40.0% | |
| TGATCGAATGCAAGCTTGTA+TGG | + | chr5_1:4490308-4490327 | Msa0712660:CDS | 40.0% | |
| ! | CTGGTGAAAACCGATTTCTT+TGG | - | chr5_1:4490355-4490374 | None:intergenic | 40.0% |
| !! | CAAAGAAATCGGTTTTCACC+AGG | + | chr5_1:4490353-4490372 | Msa0712660:CDS | 40.0% |
| !! | GGACGGTTGCTATTTGAAAT+TGG | - | chr5_1:4491192-4491211 | None:intergenic | 40.0% |
| AGTAGTCTATCAAGATCGGA+CGG | - | chr5_1:4491209-4491228 | None:intergenic | 40.0% | |
| CTGTGTCAAGTATTATGGGA+TGG | + | chr5_1:4491503-4491522 | Msa0712660:intron | 40.0% | |
| TGTCAAGTATTATGGGATGG+AGG | + | chr5_1:4491506-4491525 | Msa0712660:intron | 40.0% | |
| GTCAAGTATTATGGGATGGA+GGG | + | chr5_1:4491507-4491526 | Msa0712660:intron | 40.0% | |
| AGCGACTTTACACTAAGGAA+TGG | + | chr5_1:4491594-4491613 | Msa0712660:intron | 40.0% | |
| GCGACTTTACACTAAGGAAT+GGG | + | chr5_1:4491595-4491614 | Msa0712660:intron | 40.0% | |
| GATCTGAGTTATAACTGCAG+AGG | - | chr5_1:4491638-4491657 | None:intergenic | 40.0% | |
| !! | TGTTCAGCCGTTAAGTTGAT+CGG | + | chr5_1:4491808-4491827 | Msa0712660:intron | 40.0% |
| GCAACAACCGATCAACTTAA+CGG | - | chr5_1:4491818-4491837 | None:intergenic | 40.0% | |
| TTGATCGGTTGTTGCTGAAA+TGG | + | chr5_1:4491823-4491842 | Msa0712660:intron | 40.0% | |
| ! | ACACATCCTTTTACATAGGG+TGG | + | chr5_1:4491917-4491936 | Msa0712660:intron | 40.0% |
| ! | CACATCCTTTTACATAGGGT+GGG | + | chr5_1:4491918-4491937 | Msa0712660:intron | 40.0% |
| CTAGTGCAATTCATGGAAAG+TGG | + | chr5_1:4492014-4492033 | Msa0712660:intron | 40.0% | |
| TAGTGAGACCAAAAGAGTCT+AGG | + | chr5_1:4492343-4492362 | Msa0712660:intron | 40.0% | |
| ! | ACCAAAAGAGTCTAGGATCA+AGG | + | chr5_1:4492350-4492369 | Msa0712660:intron | 40.0% |
| ! | ACCTTGATCCTAGACTCTTT+TGG | - | chr5_1:4492354-4492373 | None:intergenic | 40.0% |
| AGTCACTAAAGAGACCAATC+CGG | + | chr5_1:4492444-4492463 | Msa0712660:intron | 40.0% | |
| ACCAATCCGGTTAAACTTCA+GGG | + | chr5_1:4492457-4492476 | Msa0712660:intron | 40.0% | |
| CATTCTCCCTGAAGTTTAAC+CGG | - | chr5_1:4492466-4492485 | None:intergenic | 40.0% | |
| GTTTAAGTGTCTAAGCTTGG+AGG | - | chr5_1:4492589-4492608 | None:intergenic | 40.0% | |
| ! | TTTAGGACAGGCTCAATTTG+AGG | - | chr5_1:4492629-4492648 | None:intergenic | 40.0% |
| !!! | AATTTGACGGGTTTTAGGAC+AGG | - | chr5_1:4492641-4492660 | None:intergenic | 40.0% |
| ATTGGTATGATAGGAGTCAG+GGG | + | chr5_1:4492666-4492685 | Msa0712660:intron | 40.0% | |
| AGATAGACAACTCCTATCAG+CGG | - | chr5_1:4493370-4493389 | None:intergenic | 40.0% | |
| ACTGTTCCAAGAAACACACA+TGG | - | chr5_1:4493534-4493553 | None:intergenic | 40.0% | |
| GATGTGTATGGGAACCTATT+TGG | + | chr5_1:4493556-4493575 | Msa0712660:CDS | 40.0% | |
| AGTGATACCAATGGAGTTAC+TGG | - | chr5_1:4493598-4493617 | None:intergenic | 40.0% | |
| CGAGCTTCATTGGTATTGTA+AGG | - | chr5_1:4493684-4493703 | None:intergenic | 40.0% | |
| GATGGACCATTTCAGTTTCA+TGG | + | chr5_1:4493752-4493771 | Msa0712660:CDS | 40.0% | |
| TGGACCATTTCAGTTTCATG+GGG | + | chr5_1:4493754-4493773 | Msa0712660:CDS | 40.0% | |
| ! | TTGCTGTTCAGATATTTCGC+GGG | + | chr5_1:4493779-4493798 | Msa0712660:CDS | 40.0% |
| !! | TGAAGGCATTTCAATTTCGC+GGG | - | chr5_1:4493815-4493834 | None:intergenic | 40.0% |
| AACACAAAAGGCTTCTGACA+CGG | - | chr5_1:4493913-4493932 | None:intergenic | 40.0% | |
| ACAACTTTGTCAAGAGCAGA+AGG | - | chr5_1:4494039-4494058 | None:intergenic | 40.0% | |
| AATATATTTGGCAGGCTCCA+AGG | + | chr5_1:4494416-4494435 | Msa0712660:intron | 40.0% | |
| GTGATGAAGTCCAACAAGAA+AGG | + | chr5_1:4494454-4494473 | Msa0712660:CDS | 40.0% | |
| GTCCAACAAGAAAGGAAGAA+TGG | + | chr5_1:4494462-4494481 | Msa0712660:CDS | 40.0% | |
| CACCATTCTTCCTTTCTTGT+TGG | - | chr5_1:4494467-4494486 | None:intergenic | 40.0% | |
| CAAGAAAGGAAGAATGGTGA+TGG | + | chr5_1:4494468-4494487 | Msa0712660:CDS | 40.0% | |
| GGGTATATGTAAAGATGGTG+AGG | + | chr5_1:4494495-4494514 | Msa0712660:CDS | 40.0% | |
| GTGTGGGATTCACTAAGGTT+GGG | - | chr5_1:4489416-4489435 | None:intergenic | 45.0% | |
| TGTGTGGGATTCACTAAGGT+TGG | - | chr5_1:4489417-4489436 | None:intergenic | 45.0% | |
| TGTGAAGGTCGTTGTTGTGT+GGG | - | chr5_1:4489432-4489451 | None:intergenic | 45.0% | |
| ATGTGAAGGTCGTTGTTGTG+TGG | - | chr5_1:4489433-4489452 | None:intergenic | 45.0% | |
| ! | CTTCTAAAAGAACCGAGCTC+CGG | + | chr5_1:4489619-4489638 | Msa0712660:CDS | 45.0% |
| CAATTCCGAACACTACATGC+CGG | - | chr5_1:4489641-4489660 | None:intergenic | 45.0% | |
| ! | CGACTAGCTAATCGTCTGAT+TGG | + | chr5_1:4489749-4489768 | Msa0712660:intron | 45.0% |
| TGACTACAATCGACTGACGT+TGG | - | chr5_1:4489796-4489815 | None:intergenic | 45.0% | |
| ! | TCGGTTGAGATTTTCACAGG+TGG | - | chr5_1:4489937-4489956 | None:intergenic | 45.0% |
| !!! | GTGTCGGTTGAGATTTTCAC+AGG | - | chr5_1:4489940-4489959 | None:intergenic | 45.0% |
| GTGAGATTCTAATCGCGGAA+CGG | - | chr5_1:4489996-4490015 | None:intergenic | 45.0% | |
| AACGTTGCGTTTAGGCCTTA+AGG | + | chr5_1:4490029-4490048 | Msa0712660:CDS | 45.0% | |
| CAAACCACCGTACATCCTTA+AGG | - | chr5_1:4490047-4490066 | None:intergenic | 45.0% | |
| ! | GGATGTACGGTGGTTTGTAA+TGG | + | chr5_1:4490050-4490069 | Msa0712660:CDS | 45.0% |
| TATGGAATGGCTTATGGTGG+TGG | + | chr5_1:4490195-4490214 | Msa0712660:CDS | 45.0% | |
| CAAGCTTGTATGGCTGAACT+TGG | + | chr5_1:4490318-4490337 | Msa0712660:CDS | 45.0% | |
| ! | TTTACAGCATTTTGTCCCCC+CGG | + | chr5_1:4490548-4490567 | Msa0712660:intron | 45.0% |
| CTAGTGGTCACACATACTAG+TGG | - | chr5_1:4490804-4490823 | None:intergenic | 45.0% | |
| ATCATCTATTGCGGGACGTA+GGG | - | chr5_1:4491279-4491298 | None:intergenic | 45.0% | |
| ATGTGTGCCCCTAGAATTCA+AGG | + | chr5_1:4491540-4491559 | Msa0712660:intron | 45.0% | |
| GGACCTACCTTGAATTCTAG+GGG | - | chr5_1:4491550-4491569 | None:intergenic | 45.0% | |
| GGGACCTACCTTGAATTCTA+GGG | - | chr5_1:4491551-4491570 | None:intergenic | 45.0% | |
| TGGGACCTACCTTGAATTCT+AGG | - | chr5_1:4491552-4491571 | None:intergenic | 45.0% | |
| GCACAAGCGACTTTACACTA+AGG | + | chr5_1:4491589-4491608 | Msa0712660:intron | 45.0% | |
| AACTCAGATCATCCCTTCTC+TGG | + | chr5_1:4491648-4491667 | Msa0712660:intron | 45.0% | |
| ACTCAGATCATCCCTTCTCT+GGG | + | chr5_1:4491649-4491668 | Msa0712660:intron | 45.0% | |
| GATTGTCACGTATGCATGCA+TGG | + | chr5_1:4491750-4491769 | Msa0712660:intron | 45.0% | |
| CGGTTGTTGCTGAAATGGAT+TGG | + | chr5_1:4491828-4491847 | Msa0712660:intron | 45.0% | |
| ! | ATCCTTTTACATAGGGTGGG+TGG | + | chr5_1:4491921-4491940 | Msa0712660:intron | 45.0% |
| ! | AAGAGTCTAGGATCAAGGTG+AGG | + | chr5_1:4492355-4492374 | Msa0712660:intron | 45.0% |
| GACCAATCCGGTTAAACTTC+AGG | + | chr5_1:4492456-4492475 | Msa0712660:intron | 45.0% | |
| TCCCTGAAGTTTAACCGGAT+TGG | - | chr5_1:4492461-4492480 | None:intergenic | 45.0% | |
| GTGTCTAAGCTTGGAGGTTT+AGG | - | chr5_1:4492583-4492602 | None:intergenic | 45.0% | |
| AGCTCATCCAGTAACTCCAT+TGG | + | chr5_1:4493588-4493607 | Msa0712660:CDS | 45.0% | |
| AGATGGTGCAGTGATACCAA+TGG | - | chr5_1:4493607-4493626 | None:intergenic | 45.0% | |
| !! | GAAGGCATTTCAATTTCGCG+GGG | - | chr5_1:4493814-4493833 | None:intergenic | 45.0% |
| ACACAAAAGGCTTCTGACAC+GGG | - | chr5_1:4493912-4493931 | None:intergenic | 45.0% | |
| !! | AAAGCATCGTGTTCCTCATC+CGG | + | chr5_1:4493990-4494009 | Msa0712660:CDS | 45.0% |
| GTACTCTATCCCATAGATGC+GGG | - | chr5_1:4494080-4494099 | None:intergenic | 45.0% | |
| CGTACTCTATCCCATAGATG+CGG | - | chr5_1:4494081-4494100 | None:intergenic | 45.0% | |
| !! | AGGAAGAATGGTGATGGATG+TGG | + | chr5_1:4494474-4494493 | Msa0712660:CDS | 45.0% |
| !! | GGAAGAATGGTGATGGATGT+GGG | + | chr5_1:4494475-4494494 | Msa0712660:CDS | 45.0% |
| !! | AAAAAAACATATTAAATTTA+AGG | - | chr5_1:4493293-4493312 | None:intergenic | 5.0% |
| GCTGGAAGAGTGGTGATTGA+TGG | - | chr5_1:4489568-4489587 | None:intergenic | 50.0% | |
| ! | CTGCATTGATGCTGGAAGAG+TGG | - | chr5_1:4489578-4489597 | None:intergenic | 50.0% |
| ! | GCTGTTTGCTGCATTGATGC+TGG | - | chr5_1:4489586-4489605 | None:intergenic | 50.0% |
| ACAGGTGGTAGACCTTCGTT+CGG | - | chr5_1:4489922-4489941 | None:intergenic | 50.0% | |
| TAGGCCTTAAGGATGTACGG+TGG | + | chr5_1:4490040-4490059 | Msa0712660:CDS | 50.0% | |
| ! | TGTAATGGGAGACGACGACA+CGG | + | chr5_1:4490065-4490084 | Msa0712660:CDS | 50.0% |
| ! | CGACGACACGGTTTTTGTGA+CGG | + | chr5_1:4490077-4490096 | Msa0712660:CDS | 50.0% |
| ! | TTACAGCATTTTGTCCCCCC+GGG | + | chr5_1:4490549-4490568 | Msa0712660:intron | 50.0% |
| GATCATCTATTGCGGGACGT+AGG | - | chr5_1:4491280-4491299 | None:intergenic | 50.0% | |
| GTGCCCCTAGAATTCAAGGT+AGG | + | chr5_1:4491544-4491563 | Msa0712660:intron | 50.0% | |
| CACCACCCACCCTATGTAAA+AGG | - | chr5_1:4491926-4491945 | None:intergenic | 50.0% | |
| ! | CTTTTACATAGGGTGGGTGG+TGG | + | chr5_1:4491924-4491943 | Msa0712660:intron | 50.0% |
| GAGCTGCAAGAAGCCCAAAT+AGG | - | chr5_1:4493573-4493592 | None:intergenic | 50.0% | |
| ATCACTGCACCATCTTGACG+TGG | + | chr5_1:4493612-4493631 | Msa0712660:CDS | 50.0% | |
| TTGGCTCAACCACGTCAAGA+TGG | - | chr5_1:4493624-4493643 | None:intergenic | 50.0% | |
| CTTGTGGCATTCGGGAAGAT+TGG | - | chr5_1:4493643-4493662 | None:intergenic | 50.0% | |
| CTTCCACTCTTGTGGCATTC+GGG | - | chr5_1:4493651-4493670 | None:intergenic | 50.0% | |
| GCTTCCACTCTTGTGGCATT+CGG | - | chr5_1:4493652-4493671 | None:intergenic | 50.0% | |
| ! | TTGAAGCGCTTCCACTCTTG+TGG | - | chr5_1:4493659-4493678 | None:intergenic | 50.0% |
| TCCGGAATGCCGATGGAAAA+TGG | + | chr5_1:4494008-4494027 | Msa0712660:CDS | 50.0% | |
| !! | GCCATTTTCCATCGGCATTC+CGG | - | chr5_1:4494012-4494031 | None:intergenic | 50.0% |
| ACTCTGCAGCAGTTTCTCCT+TGG | - | chr5_1:4494436-4494455 | None:intergenic | 50.0% | |
| GAACACTACATGCCGGAGCT+CGG | - | chr5_1:4489634-4489653 | None:intergenic | 55.0% | |
| GAGCTCCGGCATGTAGTGTT+CGG | + | chr5_1:4489633-4489652 | Msa0712660:CDS | 55.0% | |
| !! | GGAATGGCTTATGGTGGTGG+TGG | + | chr5_1:4490198-4490217 | Msa0712660:CDS | 55.0% |
| TCCCACGTTGTACCAAGCTC+TGG | + | chr5_1:4491567-4491586 | Msa0712660:intron | 55.0% | |
| GCCAGAGCTTGGTACAACGT+GGG | - | chr5_1:4491571-4491590 | None:intergenic | 55.0% | |
| TGCCAGAGCTTGGTACAACG+TGG | - | chr5_1:4491572-4491591 | None:intergenic | 55.0% | |
| AAGTCGCTTGTGCCAGAGCT+TGG | - | chr5_1:4491582-4491601 | None:intergenic | 55.0% | |
| ! | AGGGGCGTAGCCCTTCATAT+GGG | + | chr5_1:4492684-4492703 | Msa0712660:intron | 55.0% |
| GCGTAGCCCTTCATATGGGA+GGG | + | chr5_1:4492688-4492707 | Msa0712660:intron | 55.0% | |
| CGTAGCCCTTCATATGGGAG+GGG | + | chr5_1:4492689-4492708 | Msa0712660:intron | 55.0% | |
| GGCTACCCCTCCCATATGAA+GGG | - | chr5_1:4492697-4492716 | None:intergenic | 55.0% | |
| AGGCTACCCCTCCCATATGA+AGG | - | chr5_1:4492698-4492717 | None:intergenic | 55.0% | |
| TCATATGGGAGGGGTAGCCT+TGG | + | chr5_1:4492698-4492717 | Msa0712660:intron | 55.0% | |
| CTTCCCGAATGCCACAAGAG+TGG | + | chr5_1:4493645-4493664 | Msa0712660:CDS | 55.0% | |
| CCTGCTGAGTCGAGCTTCAT+TGG | - | chr5_1:4493694-4493713 | None:intergenic | 55.0% | |
| CCAATGAAGCTCGACTCAGC+AGG | + | chr5_1:4493691-4493710 | Msa0712660:CDS | 55.0% | |
| !! | GACACGGGTGTCGAGTAACA+GGG | - | chr5_1:4493897-4493916 | None:intergenic | 55.0% |
| !! | TGACACGGGTGTCGAGTAAC+AGG | - | chr5_1:4493898-4493917 | None:intergenic | 55.0% |
| TTCCTCATCCGGAATGCCGA+TGG | + | chr5_1:4494001-4494020 | Msa0712660:CDS | 55.0% | |
| TTCCATCGGCATTCCGGATG+AGG | - | chr5_1:4494006-4494025 | None:intergenic | 55.0% | |
| AGAAGCCAGACCCGCATCTA+TGG | + | chr5_1:4494067-4494086 | Msa0712660:intron | 55.0% | |
| GAAGCCAGACCCGCATCTAT+GGG | + | chr5_1:4494068-4494087 | Msa0712660:intron | 55.0% | |
| CTATCCCATAGATGCGGGTC+TGG | - | chr5_1:4494075-4494094 | None:intergenic | 55.0% | |
| GGCGGTTACCCACTCCTAAC+AGG | - | chr5_1:4490524-4490543 | None:intergenic | 60.0% | |
| ! | CAGGGGCGTAGCCCTTCATA+TGG | + | chr5_1:4492683-4492702 | Msa0712660:intron | 60.0% |
| GGCGTAGCCCTTCATATGGG+AGG | + | chr5_1:4492687-4492706 | Msa0712660:intron | 60.0% | |
| TTGCGAGCTTCGCCGCTGAT+AGG | + | chr5_1:4493355-4493374 | Msa0712660:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 4489353 | 4494531 | 4489353 | ID=Msa0712660;Name=Msa0712660 |
| chr5_1 | mRNA | 4489353 | 4494531 | 4489353 | ID=Msa0712660-mRNA-1;Parent=Msa0712660;Name=Msa0712660-mRNA-1;_AED=0.06;_eAED=0.06;_QI=37|0.66|0.25|1|1|1|4|0|480 |
| chr5_1 | exon | 4489353 | 4489709 | 4489353 | ID=Msa0712660-mRNA-1:exon:1877;Parent=Msa0712660-mRNA-1 |
| chr5_1 | exon | 4489861 | 4490374 | 4489861 | ID=Msa0712660-mRNA-1:exon:1878;Parent=Msa0712660-mRNA-1 |
| chr5_1 | exon | 4493553 | 4494059 | 4493553 | ID=Msa0712660-mRNA-1:exon:1879;Parent=Msa0712660-mRNA-1 |
| chr5_1 | exon | 4494430 | 4494531 | 4494430 | ID=Msa0712660-mRNA-1:exon:1880;Parent=Msa0712660-mRNA-1 |
| chr5_1 | five_prime_UTR | 4489353 | 4489389 | 4489353 | ID=Msa0712660-mRNA-1:five_prime_utr;Parent=Msa0712660-mRNA-1 |
| chr5_1 | CDS | 4489390 | 4489709 | 4489390 | ID=Msa0712660-mRNA-1:cds;Parent=Msa0712660-mRNA-1 |
| chr5_1 | CDS | 4489861 | 4490374 | 4489861 | ID=Msa0712660-mRNA-1:cds;Parent=Msa0712660-mRNA-1 |
| chr5_1 | CDS | 4493553 | 4494059 | 4493553 | ID=Msa0712660-mRNA-1:cds;Parent=Msa0712660-mRNA-1 |
| chr5_1 | CDS | 4494430 | 4494531 | 4494430 | ID=Msa0712660-mRNA-1:cds;Parent=Msa0712660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
