AlfalfaGEDB | Msa0537360

M. sativa cultivar zhongmu-4 / Msa0537360

KEGG: K00512|K11818|K12156
GO: GO:0000162 GO:0002376 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005886 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009639 GO:0009641 GO:0009682 GO:0009683 GO:0009684 GO:0009759 GO:0009850 GO:0009851 GO:0009987 GO:0010114 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0022622 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0034754 GO:0042343 GO:0042401 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045087 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0048364 GO:0048731 GO:0048830 GO:0048856 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055114 GO:0065007 GO:0065008 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0098542 GO:0099402 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537360	XP_013455100.1	93.333	375	25	0	19	393	19	393	0.0	702

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537360	sp\|O65782\|C83B1_ARATH	44.757	391	213	2	5	393	3	392	5.12e-117	353

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537360	A0A072UJ64	93.333	375	25	0	19	393	19	393	0.0	702

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0117910	Msa0537360	0.809846	1.546394e-50	-8.615850e-47
Msa0298240	Msa0537360	0.824948	6.120381e-54	-8.615850e-47
Msa0537360	Msa0591790	0.804915	1.717328e-49	-8.615850e-47
Msa0537360	Msa0688500	0.816569	5.168852e-52	-8.615850e-47
Msa0537360	Msa0712660	0.812686	3.742445e-51	-8.615850e-47
Msa0537360	Msa0940460	0.808291	3.328464e-50	-8.615850e-47
Msa0537360	Msa1010840	0.814933	1.196899e-51	-8.615850e-47
Msa0537360	Msa1032450	0.810335	1.213055e-50	-8.615850e-47
Msa0537360	Msa1037900	0.809322	2.003701e-50	-8.615850e-47
Msa0537360	Msa1037910	0.803150	3.998530e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537360	MtrunA17_Chr4g0011981	93.333	375	25	0	19	393	19	393	0.0	702
Msa0537360	MtrunA17_Chr4g0011961	83.461	393	64	1	1	393	1	392	0.0	662
Msa0537360	MtrunA17_Chr4g0011921	79.644	393	80	0	1	393	1	393	0.0	641
Msa0537360	MtrunA17_Chr4g0011901	77.660	376	84	0	18	393	18	393	0.0	580
Msa0537360	MtrunA17_Chr4g0011881	71.990	382	104	2	14	393	13	393	0.0	531
Msa0537360	MtrunA17_Chr5g0419691	70.718	362	106	0	29	390	29	390	0.0	521
Msa0537360	MtrunA17_Chr4g0011871	71.625	363	102	1	29	390	29	391	0.0	520
Msa0537360	MtrunA17_Chr5g0406651	70.757	383	110	1	13	393	12	394	0.0	516
Msa0537360	MtrunA17_Chr4g0011931	83.390	295	49	0	1	295	1	295	3.54e-175	491
Msa0537360	MtrunA17_Chr7g0218601	57.632	380	151	5	16	388	15	391	5.28e-151	437

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0537360	AT4G31500.1	44.757	391	213	2	5	393	3	392	5.21e-118	353
Msa0537360	AT4G13770.1	39.340	394	232	4	5	393	4	395	8.33e-99	304
Msa0537360	AT3G26310.1	40.351	399	226	7	1	393	1	393	4.03e-93	289
Msa0537360	AT3G26330.1	42.781	374	205	5	24	393	26	394	5.80e-93	289
Msa0537360	AT3G26300.1	40.648	401	222	7	2	393	1	394	3.64e-92	287
Msa0537360	AT5G57260.1	40.838	382	211	7	21	393	22	397	1.16e-91	286
Msa0537360	AT3G26320.1	40.206	388	220	7	11	393	14	394	5.00e-89	279
Msa0537360	AT4G13310.2	39.726	365	209	5	28	388	31	388	8.75e-88	272
Msa0537360	AT4G13310.1	39.726	365	209	5	28	388	31	388	4.95e-86	271
Msa0537360	AT3G48280.1	34.772	394	245	5	2	393	1	384	6.29e-86	270

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Find 72 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGACATATAACGGGT+CGG	0.608114	4_1:-15721514	Msa0537360:CDS
AAGGGCGTGCCCTGGGCCTT+AGG	0.391941	4_1:+15716114	None:intergenic
AATGTTCATCAATAACCTCT+TGG	0.477647	4_1:+15721085	None:intergenic
ACAAATGATGTTTCTTGAGT+TGG	0.382063	4_1:+15721007	None:intergenic
ACAAGAAGAAATCAGGAACT+TGG	0.455644	4_1:-15717030	Msa0537360:CDS
ACATACAATATTGTCTTGGC+TGG	0.438691	4_1:+15716855	None:intergenic
ACCAAGTGGATAATGTTTAA+TGG	0.302156	4_1:+15721752	None:intergenic
ACCATTAAACATTATCCACT+TGG	0.560888	4_1:-15721753	Msa0537360:CDS
AGAGGTTATTGATGAACATT+TGG	0.350779	4_1:-15721082	Msa0537360:CDS
AGTTGGATTGATAAACTTAG+GGG	0.668042	4_1:-15721156	Msa0537360:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTGGAAGAATATTAGCAA+AGG	+	chr4_1:15716110-15716129	None:intergenic	30.0%
ACCATTAAACATTATCCACT+TGG	-	chr4_1:15716137-15716156	Msa0537360:CDS	30.0%
ACCAAGTGGATAATGTTTAA+TGG	+	chr4_1:15716141-15716160	None:intergenic	30.0%
TGATGAAGGTTTCCTATTAT+GGG	+	chr4_1:15716176-15716195	None:intergenic	30.0%
TTGATGAAGGTTTCCTATTA+TGG	+	chr4_1:15716177-15716196	None:intergenic	30.0%
ATCACAAAACAAATGGTCAT+TGG	+	chr4_1:15716333-15716352	None:intergenic	30.0%
TAGGTCTATCACAAAACAAA+TGG	+	chr4_1:15716340-15716359	None:intergenic	30.0%
TGAATAATGTGATACACGTT+TGG	+	chr4_1:15716474-15716493	None:intergenic	30.0%
TTATCAATCCAACTCATGAA+TGG	+	chr4_1:15716728-15716747	None:intergenic	30.0%
GAGTTGGATTGATAAACTTA+GGG	-	chr4_1:15716733-15716752	Msa0537360:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	15716065	15721847	15716065	ID=Msa0537360;Name=Msa0537360
chr4_1	mRNA	15716065	15721847	15716065	ID=Msa0537360-mRNA-1;Parent=Msa0537360;Name=Msa0537360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|420
chr4_1	exon	15720963	15721847	15720963	ID=Msa0537360-mRNA-1:exon:4786;Parent=Msa0537360-mRNA-1
chr4_1	exon	15716861	15717144	15716861	ID=Msa0537360-mRNA-1:exon:4785;Parent=Msa0537360-mRNA-1
chr4_1	exon	15716065	15716158	15716065	ID=Msa0537360-mRNA-1:exon:4784;Parent=Msa0537360-mRNA-1
chr4_1	CDS	15720963	15721847	15720963	ID=Msa0537360-mRNA-1:cds;Parent=Msa0537360-mRNA-1
chr4_1	CDS	15716861	15717144	15716861	ID=Msa0537360-mRNA-1:cds;Parent=Msa0537360-mRNA-1
chr4_1	CDS	15716065	15716158	15716065	ID=Msa0537360-mRNA-1:cds;Parent=Msa0537360-mRNA-1

Gene Sequence

>Msa0537360

ATGTTGACAGTACTAATTCTACTTGCTCTATGCCTAATTCTTCCTTTGCTAATATTCTTCCACAACTATAGAACCATTAAACATTATCCACTTGGTCCTAAAGGCCTTCCCATAATAGGAAACCTTCATCAACTAGACATTTCTAATCTTCCAATTCAATTTTCTCAATTCTCAAAGATATATGGTCCTCTATTTTCAATTCAACTTGGATTAAGAAAAGCTATTGTTGTATCTTCAGCTGAAATTGCAAAAGAAGTATTGAAAACCAATGACCATTTGTTTTGTGATAGACCTAGATTATATGCTCAACAAAAATTGACATATAACGGGTCGGAAATTATATTTTCACAATACACTGATTTTTGGAGAGAAATAAGAAAAATTTGTGTTGTTCATATTCTTAGTTCCAAACGTGTATCACATTATTCATCTATAAGAAAGTTTGAGGTGAAGAAAATGATCAAAAAAATTTCAGGGCATGTTGATTCTTCAAGTGTTACAAATTTGAGTGAGTTATTGATTTCACTCTCAAGTACTATAATATGTAGGATTGCTTTTGGGAAAAGCTATGAAGATGATGGAATTGAGAAGAGTAGGTTTCATGGAATGTTACATGAGTTTCAAGCTTTACTAGCAGAAATATTTGTTTCTGATTATATTCCATTCATGAGTTGGATTGATAAACTTAGGGGATTGCATGGTCGTCTTGAAAGAAATTTCAAGGAGTTTGATGAGTTTTACCAAGAGGTTATTGATGAACATTTGGATCCAAATAGAGAACAAATTAAAGATGAAGAAGACATTGTTGATGTCTTGCTCCAACTCAAGAAACATCATTTGTCTTCAATTGATCTCACTTTCAATCACATCAAAGCTGTCCTCGTGGATACAATTGTAGCTGCAACAGATACCACATCAGCCACATTAGCTTGGGCTATGACCGCCCTAATGAAAAACCCAAGGGTATTGGATAAAGTACAAGAAGAAATCAGGAACTTGGGAGGTGCAAAAGATTTTTTAGATGAATGTGATCTTCAAAACTTACCTTATTTGAATGCAGTGATTAAAGAGACGTTAAGATTGCATCTACCAGCCCCATTGCTTCTGTCTAGAGAATCACGTGAAAATTGCACTATAAGTGGATACAATATTCCAGCCAAGACAATATTATCAATGGACCGTCAATATCTTCCTAAGGCCCAGGGCACGCCCTTCCTAGGGCGCCGTCTCAGCCAGCCTCTAGAGCTCGACAGAAAGAATTAA

Protein sequence

>Msa0537360

MLTVLILLALCLILPLLIFFHNYRTIKHYPLGPKGLPIIGNLHQLDISNLPIQFSQFSKIYGPLFSIQLGLRKAIVVSSAEIAKEVLKTNDHLFCDRPRLYAQQKLTYNGSEIIFSQYTDFWREIRKICVVHILSSKRVSHYSSIRKFEVKKMIKKISGHVDSSSVTNLSELLISLSSTIICRIAFGKSYEDDGIEKSRFHGMLHEFQALLAEIFVSDYIPFMSWIDKLRGLHGRLERNFKEFDEFYQEVIDEHLDPNREQIKDEEDIVDVLLQLKKHHLSSIDLTFNHIKAVLVDTIVAATDTTSATLAWAMTALMKNPRVLDKVQEEIRNLGGAKDFLDECDLQNLPYLNAVIKETLRLHLPAPLLLSRESRENCTISGYNIPAKTILSMDRQYLPKAQGTPFLGRRLSQPLELDRKN*