Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752840 | PNY11437.1 | 89.545 | 220 | 11 | 1 | 15 | 222 | 20 | 239 | 2.98e-144 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752840 | A0A2K3P829 | 89.545 | 220 | 11 | 1 | 15 | 222 | 20 | 239 | 1.43e-144 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa0752840 | 0.814554 | 1.452578e-51 | -8.615850e-47 |
| Msa0019600 | Msa0752840 | 0.844881 | 5.742432e-59 | -8.615850e-47 |
| Msa0050040 | Msa0752840 | 0.807887 | 4.057980e-50 | -8.615850e-47 |
| Msa0102990 | Msa0752840 | 0.807625 | 4.612956e-50 | -8.615850e-47 |
| Msa0111750 | Msa0752840 | 0.847628 | 1.025336e-59 | -8.615850e-47 |
| Msa0669840 | Msa0752840 | 0.853875 | 1.789710e-61 | -8.615850e-47 |
| Msa0707220 | Msa0752840 | 0.831799 | 1.359787e-55 | -8.615850e-47 |
| Msa0709450 | Msa0752840 | 0.820504 | 6.624248e-53 | -8.615850e-47 |
| Msa0711320 | Msa0752840 | 0.802728 | 4.888964e-49 | -8.615850e-47 |
| Msa0712660 | Msa0752840 | 0.807051 | 6.105833e-50 | -8.615850e-47 |
| Msa0725860 | Msa0752840 | 0.811066 | 8.431890e-51 | -8.615850e-47 |
| Msa0739580 | Msa0752840 | 0.826402 | 2.766710e-54 | -8.615850e-47 |
| Msa0748400 | Msa0752840 | 0.852220 | 5.326529e-61 | -8.615850e-47 |
| Msa0751890 | Msa0752840 | 0.811209 | 7.849765e-51 | -8.615850e-47 |
| Msa0752840 | Msa0782360 | 0.819549 | 1.095753e-52 | -8.615850e-47 |
| Msa0752840 | Msa0831940 | 0.825162 | 5.449266e-54 | -8.615850e-47 |
| Msa0752840 | Msa0860280 | 0.827542 | 1.477464e-54 | -8.615850e-47 |
| Msa0752840 | Msa0867350 | 0.854194 | 1.448100e-61 | -8.615850e-47 |
| Msa0752840 | Msa0896350 | 0.807524 | 4.846785e-50 | -8.615850e-47 |
| Msa0752840 | Msa0898730 | 0.837309 | 5.608216e-57 | -8.615850e-47 |
| Msa0752840 | Msa0916640 | 0.856014 | 4.282335e-62 | -8.615850e-47 |
| Msa0752840 | Msa0922750 | 0.817087 | 3.955368e-52 | -8.615850e-47 |
| Msa0752840 | Msa0929870 | 0.833601 | 4.856540e-56 | -8.615850e-47 |
| Msa0752840 | Msa0953540 | 0.847937 | 8.429419e-60 | -8.615850e-47 |
| Msa0752840 | Msa0961560 | 0.828650 | 7.991233e-55 | -8.615850e-47 |
| Msa0752840 | Msa0996270 | 0.831001 | 2.137382e-55 | -8.615850e-47 |
| Msa0752840 | Msa0999300 | 0.810668 | 1.028027e-50 | -8.615850e-47 |
| Msa0752840 | Msa1032450 | 0.809078 | 2.260646e-50 | -8.615850e-47 |
| Msa0752840 | Msa1037890 | 0.808281 | 3.345052e-50 | -8.615850e-47 |
| Msa0752840 | Msa1037900 | 0.828213 | 1.018601e-54 | -8.615850e-47 |
| Msa0752840 | Msa1037910 | 0.813855 | 2.072095e-51 | -8.615850e-47 |
| Msa0752840 | Msa1041530 | 0.800937 | 1.140022e-48 | -8.615850e-47 |
| Msa0752840 | Msa1081570 | 0.815042 | 1.132140e-51 | -8.615850e-47 |
| Msa0752840 | Msa1084520 | 0.821526 | 3.852731e-53 | -8.615850e-47 |
| Msa0752840 | Msa1125810 | 0.850554 | 1.575549e-60 | -8.615850e-47 |
| Msa0752840 | Msa1127140 | 0.814288 | 1.662786e-51 | -8.615850e-47 |
| Msa0752840 | Msa1129950 | 0.809827 | 1.560849e-50 | -8.615850e-47 |
| Msa0752840 | Msa1129960 | 0.833046 | 6.678591e-56 | -8.615850e-47 |
| Msa0752840 | Msa1129970 | 0.811042 | 8.530653e-51 | -8.615850e-47 |
| Msa0752840 | Msa1130010 | 0.837229 | 5.878411e-57 | -8.615850e-47 |
| Msa0752840 | Msa1145020 | 0.838024 | 3.676250e-57 | -8.615850e-47 |
| Msa0752840 | Msa1166400 | 0.805879 | 1.078817e-49 | -8.615850e-47 |
| Msa0752840 | Msa1171310 | 0.837238 | 5.848541e-57 | -8.615850e-47 |
| Msa0752840 | Msa1201160 | 0.816379 | 5.699349e-52 | -8.615850e-47 |
| Msa0752840 | Msa1228190 | 0.810048 | 1.398863e-50 | -8.615850e-47 |
| Msa0752840 | Msa1294290 | 0.800376 | 1.483770e-48 | -8.615850e-47 |
| Msa0752840 | Msa1305510 | 0.829052 | 6.385249e-55 | -8.615850e-47 |
| Msa0752840 | Msa1378870 | 0.804377 | 2.224047e-49 | -8.615850e-47 |
| Msa0752840 | Msa1394890 | 0.814261 | 1.685439e-51 | -8.615850e-47 |
| Msa0752840 | Msa1406780 | 0.821731 | 3.454904e-53 | -8.615850e-47 |
| Msa0752840 | Msa1420060 | 0.806356 | 8.560026e-50 | -8.615850e-47 |
| Msa0752840 | Msa1421550 | 0.825488 | 4.561086e-54 | -8.615850e-47 |
| Msa0752840 | Msa1431850 | 0.810207 | 1.292709e-50 | -8.615850e-47 |
| Msa0752840 | Msa1461060 | 0.836071 | 1.160139e-56 | -8.615850e-47 |
| Msa0124130 | Msa0752840 | 0.838579 | 2.645143e-57 | -8.615850e-47 |
| Msa0141120 | Msa0752840 | 0.802261 | 6.100637e-49 | -8.615850e-47 |
| Msa0149140 | Msa0752840 | 0.848716 | 5.131968e-60 | -8.615850e-47 |
| Msa0152480 | Msa0752840 | 0.829345 | 5.423066e-55 | -8.615850e-47 |
| Msa0152500 | Msa0752840 | 0.830617 | 2.654413e-55 | -8.615850e-47 |
| Msa0212080 | Msa0752840 | 0.810102 | 1.362008e-50 | -8.615850e-47 |
| Msa0215640 | Msa0752840 | 0.820830 | 5.575466e-53 | -8.615850e-47 |
| Msa0392420 | Msa0752840 | 0.837190 | 6.017409e-57 | -8.615850e-47 |
| Msa0392460 | Msa0752840 | 0.837249 | 5.808845e-57 | -8.615850e-47 |
| Msa0392490 | Msa0752840 | 0.834645 | 2.658394e-56 | -8.615850e-47 |
| Msa0406000 | Msa0752840 | 0.864534 | 1.134770e-64 | -8.615850e-47 |
| Msa0424330 | Msa0752840 | 0.830193 | 3.370270e-55 | -8.615850e-47 |
| Msa0424340 | Msa0752840 | 0.830090 | 3.571675e-55 | -8.615850e-47 |
| Msa0424350 | Msa0752840 | 0.835629 | 1.501600e-56 | -8.615850e-47 |
| Msa0451400 | Msa0752840 | 0.862418 | 5.138327e-64 | -8.615850e-47 |
| Msa0252630 | Msa0752840 | 0.822627 | 2.140880e-53 | -8.615850e-47 |
| Msa0306120 | Msa0752840 | 0.825858 | 3.726961e-54 | -8.615850e-47 |
| Msa0333700 | Msa0752840 | 0.809563 | 1.778577e-50 | -8.615850e-47 |
| Msa0343660 | Msa0752840 | 0.818737 | 1.677128e-52 | -8.615850e-47 |
| Msa0344570 | Msa0752840 | 0.837643 | 4.605346e-57 | -8.615850e-47 |
| Msa0351770 | Msa0752840 | 0.815169 | 1.060768e-51 | -8.615850e-47 |
| Msa0359250 | Msa0752840 | 0.855385 | 6.539099e-62 | -8.615850e-47 |
| Msa0487570 | Msa0752840 | 0.840898 | 6.586707e-58 | -8.615850e-47 |
| Msa0487630 | Msa0752840 | 0.829427 | 5.179480e-55 | -8.615850e-47 |
| Msa0492190 | Msa0752840 | 0.846755 | 1.779092e-59 | -8.615850e-47 |
| Msa0515950 | Msa0752840 | 0.825809 | 3.827967e-54 | -8.615850e-47 |
| Msa0534930 | Msa0752840 | 0.816405 | 5.623439e-52 | -8.615850e-47 |
| Msa0538220 | Msa0752840 | 0.805106 | 1.566603e-49 | -8.615850e-47 |
| Msa0575740 | Msa0752840 | 0.816046 | 6.765976e-52 | -8.615850e-47 |
| Msa0591790 | Msa0752840 | 0.814250 | 1.695175e-51 | -8.615850e-47 |
| Msa0594090 | Msa0752840 | 0.822335 | 2.502394e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752840 | MtrunA17_Chr5g0397311 | 92.523 | 214 | 4 | 1 | 21 | 222 | 21 | 234 | 4.58e-148 | 411 |
| Msa0752840 | MtrunA17_Chr8g0387371 | 78.704 | 216 | 34 | 1 | 18 | 221 | 301 | 516 | 9.32e-130 | 375 |
| Msa0752840 | MtrunA17_Chr8g0348511 | 64.352 | 216 | 64 | 2 | 18 | 221 | 274 | 488 | 7.96e-101 | 301 |
| Msa0752840 | MtrunA17_Chr2g0327551 | 56.481 | 216 | 82 | 1 | 18 | 221 | 240 | 455 | 5.54e-91 | 274 |
| Msa0752840 | MtrunA17_Chr4g0030331 | 60.227 | 176 | 70 | 0 | 18 | 193 | 302 | 477 | 1.19e-82 | 254 |
| Msa0752840 | MtrunA17_Chr7g0248231 | 63.095 | 168 | 61 | 1 | 21 | 188 | 3 | 169 | 1.26e-78 | 234 |
| Msa0752840 | MtrunA17_Chr4g0023991 | 39.912 | 228 | 116 | 7 | 8 | 219 | 250 | 472 | 2.81e-44 | 154 |
| Msa0752840 | MtrunA17_Chr4g0024001 | 34.978 | 223 | 134 | 4 | 5 | 219 | 255 | 474 | 7.31e-41 | 145 |
| Msa0752840 | MtrunA17_Chr7g0239421 | 38.889 | 198 | 106 | 4 | 18 | 201 | 289 | 485 | 1.93e-40 | 144 |
| Msa0752840 | MtrunA17_Chr3g0112211 | 35.814 | 215 | 110 | 6 | 18 | 219 | 275 | 474 | 3.14e-40 | 143 |
| Msa0752840 | MtrunA17_Chr2g0322991 | 37.264 | 212 | 123 | 4 | 18 | 219 | 258 | 469 | 5.69e-36 | 132 |
| Msa0752840 | MtrunA17_Chr5g0395861 | 30.556 | 216 | 134 | 4 | 18 | 218 | 321 | 535 | 2.54e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752840 | AT4G23490.1 | 68.981 | 216 | 55 | 1 | 18 | 221 | 309 | 524 | 1.28e-112 | 332 |
| Msa0752840 | AT5G41460.1 | 69.907 | 216 | 52 | 2 | 18 | 221 | 308 | 522 | 1.82e-110 | 327 |
| Msa0752840 | AT4G11350.1 | 66.204 | 216 | 61 | 1 | 18 | 221 | 290 | 505 | 3.31e-109 | 323 |
| Msa0752840 | AT1G07850.1 | 56.221 | 217 | 82 | 2 | 18 | 221 | 318 | 534 | 5.84e-85 | 262 |
| Msa0752840 | AT1G01570.1 | 51.142 | 219 | 92 | 2 | 18 | 221 | 256 | 474 | 4.27e-81 | 250 |
| Msa0752840 | AT1G01570.2 | 51.142 | 219 | 92 | 2 | 18 | 221 | 287 | 505 | 1.04e-80 | 250 |
| Msa0752840 | AT4G00295.1 | 51.685 | 178 | 84 | 1 | 18 | 193 | 282 | 459 | 1.19e-60 | 197 |
| Msa0752840 | AT2G37730.1 | 38.208 | 212 | 113 | 5 | 18 | 213 | 293 | 502 | 3.10e-47 | 163 |
| Msa0752840 | AT4G15240.1 | 37.004 | 227 | 129 | 6 | 5 | 219 | 259 | 483 | 1.79e-40 | 144 |
| Msa0752840 | AT1G05280.1 | 34.404 | 218 | 126 | 6 | 18 | 219 | 270 | 486 | 5.77e-38 | 137 |
| Msa0752840 | AT3G11420.1 | 33.182 | 220 | 125 | 6 | 18 | 218 | 287 | 503 | 1.72e-36 | 134 |
| Msa0752840 | AT5G12460.1 | 40.559 | 143 | 79 | 2 | 18 | 160 | 228 | 364 | 6.90e-34 | 126 |
| Msa0752840 | AT1G05280.2 | 36.723 | 177 | 100 | 3 | 18 | 193 | 270 | 435 | 4.71e-32 | 121 |
| Msa0752840 | AT1G33250.1 | 29.439 | 214 | 132 | 3 | 18 | 214 | 325 | 536 | 5.85e-30 | 116 |
Find 51 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAGAACATTTCTTAAT+TGG | 0.163109 | 5_2:-6570874 | Msa0752840:CDS |
| AATAGTCCACGTGTGTTTCT+TGG | 0.254514 | 5_2:-6571179 | Msa0752840:CDS |
| TCCGGAATGCCGATGGAAAA+TGG | 0.320425 | 5_2:-6570696 | Msa0752840:CDS |
| GATGGACCATTTCAGTTTCA+TGG | 0.324965 | 5_2:-6570952 | Msa0752840:CDS |
| GCTTCCACTCTTGTGGCATT+CGG | 0.348471 | 5_2:+6571055 | None:intergenic |
| TGACACGGGTGTCGAGTAAC+AGG | 0.350943 | 5_2:+6570809 | None:intergenic |
| CTTCCACTCTTGTGGCATTC+GGG | 0.360822 | 5_2:+6571056 | None:intergenic |
| GATGTGTATGGGAACCTATT+TGG | 0.375233 | 5_2:-6571148 | Msa0752840:CDS |
| ATGTGTATGGGAACCTATTT+GGG | 0.377930 | 5_2:-6571147 | Msa0752840:CDS |
| CTTGTGGCATTCGGGAAGAT+TGG | 0.406308 | 5_2:+6571064 | None:intergenic |
| AGTGATACCAATGGAGTTAC+TGG | 0.408585 | 5_2:+6571109 | None:intergenic |
| CGAGCTTCATTGGTATTGTA+AGG | 0.413132 | 5_2:+6571023 | None:intergenic |
| GAGCTGCAAGAAGCCCAAAT+AGG | 0.439253 | 5_2:+6571134 | None:intergenic |
| AAAGCATCGTGTTCCTCATC+CGG | 0.442762 | 5_2:-6570714 | Msa0752840:CDS |
| TTCCATCGGCATTCCGGATG+AGG | 0.443194 | 5_2:+6570701 | None:intergenic |
| ACTCTGCAGCAGTTTCTCCT+TGG | 0.444199 | 5_2:+6570271 | None:intergenic |
| CCTGCTGAGTCGAGCTTCAT+TGG | 0.447499 | 5_2:+6571013 | None:intergenic |
| TTGGAACAGTATGATGTGTA+TGG | 0.457109 | 5_2:-6571160 | Msa0752840:CDS |
| TTTGAAAGGTAAAACACAAA+AGG | 0.457164 | 5_2:+6570782 | None:intergenic |
| CAATTAAGAAATGTTCTTGA+AGG | 0.458016 | 5_2:+6570875 | None:intergenic |
| ATGGACCATTTCAGTTTCAT+GGG | 0.472620 | 5_2:-6570951 | Msa0752840:CDS |
| AAAACCCCATGAAACTGAAA+TGG | 0.481667 | 5_2:+6570946 | None:intergenic |
| AGGAAGAATGGTGATGGATG+TGG | 0.482118 | 5_2:-6570230 | Msa0752840:CDS |
| GTCAAACAAGAAAGGAAGAA+TGG | 0.491939 | 5_2:-6570242 | Msa0752840:CDS |
| TGAAGGCATTTCAATTTCGC+GGG | 0.500204 | 5_2:+6570892 | None:intergenic |
| TTCCTCATCCGGAATGCCGA+TGG | 0.506157 | 5_2:-6570703 | Msa0752840:CDS |
| GTGATGAAGTCAAACAAGAA+AGG | 0.521900 | 5_2:-6570250 | Msa0752840:CDS |
| TTGAAGCGCTTCCACTCTTG+TGG | 0.527472 | 5_2:+6571048 | None:intergenic |
| GATGTGGGTATATGTAAAGA+TGG | 0.530359 | 5_2:-6570214 | Msa0752840:CDS |
| TTGAAGGCATTTCAATTTCG+CGG | 0.531589 | 5_2:+6570891 | None:intergenic |
| AATATATTTGGCAGGCTCCA+AGG | 0.539308 | 5_2:-6570288 | Msa0752840:intron |
| CAAGAAAGGAAGAATGGTGA+TGG | 0.543356 | 5_2:-6570236 | Msa0752840:CDS |
| TTTGCTGTTCAGATATTTCG+CGG | 0.549173 | 5_2:-6570926 | Msa0752840:CDS |
| ACACAAAAGGCTTCTGACAC+GGG | 0.550493 | 5_2:+6570795 | None:intergenic |
| AACACAAAAGGCTTCTGACA+CGG | 0.555456 | 5_2:+6570794 | None:intergenic |
| GGAAGAATGGTGATGGATGT+GGG | 0.564471 | 5_2:-6570229 | Msa0752840:CDS |
| GTTACGACAAAGAAAAGAGA+TGG | 0.565849 | 5_2:-6570970 | Msa0752840:CDS |
| AGCTCATCCAGTAACTCCAT+TGG | 0.575487 | 5_2:-6571116 | Msa0752840:CDS |
| CCAATGAAGCTCGACTCAGC+AGG | 0.595651 | 5_2:-6571013 | Msa0752840:CDS |
| ACAACTTTGTCAAGAGCAGA+AGG | 0.600062 | 5_2:+6570668 | None:intergenic |
| TTGGCTCAACCACGTCAAGA+TGG | 0.607999 | 5_2:+6571083 | None:intergenic |
| AGATGGTGCAGTGATACCAA+TGG | 0.614001 | 5_2:+6571100 | None:intergenic |
| CTTCCCGAATGCCACAAGAG+TGG | 0.621715 | 5_2:-6571059 | Msa0752840:CDS |
| TTGCTGTTCAGATATTTCGC+GGG | 0.625108 | 5_2:-6570925 | Msa0752840:CDS |
| TGGACCATTTCAGTTTCATG+GGG | 0.633074 | 5_2:-6570950 | Msa0752840:CDS |
| TGGAACAGTATGATGTGTAT+GGG | 0.639733 | 5_2:-6571159 | Msa0752840:CDS |
| GACACGGGTGTCGAGTAACA+GGG | 0.666804 | 5_2:+6570810 | None:intergenic |
| GAAGGCATTTCAATTTCGCG+GGG | 0.666864 | 5_2:+6570893 | None:intergenic |
| GGGTATATGTAAAGATGGTG+AGG | 0.687530 | 5_2:-6570209 | Msa0752840:CDS |
| ATCACTGCACCATCTTGACG+TGG | 0.717319 | 5_2:-6571092 | Msa0752840:CDS |
| ACTGTTCCAAGAAACACACG+TGG | 0.758422 | 5_2:+6571173 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAGTTGAATATTGTTTA+AGG | - | chr5_2:6570826-6570845 | Msa0752840:CDS | 15.0% |
| !!! | TTAATGTTACTTAATTTCTT+TGG | - | chr5_2:6571077-6571096 | Msa0752840:CDS | 15.0% |
| !! | GCTCATATATTAAATATATT+TGG | - | chr5_2:6571106-6571125 | Msa0752840:CDS | 15.0% |
| !! | ATATATTAAATATATTTGGC+AGG | - | chr5_2:6571110-6571129 | Msa0752840:CDS | 15.0% |
| !! | AATTAGTTGAATATTGTTTA+AGG | - | chr5_2:6570826-6570845 | Msa0752840:CDS | 15.0% |
| !!! | TTAATGTTACTTAATTTCTT+TGG | - | chr5_2:6571077-6571096 | Msa0752840:CDS | 15.0% |
| !! | GCTCATATATTAAATATATT+TGG | - | chr5_2:6571106-6571125 | Msa0752840:CDS | 15.0% |
| !! | ATATATTAAATATATTTGGC+AGG | - | chr5_2:6571110-6571129 | Msa0752840:CDS | 15.0% |
| !!! | AATTGAATTTAGCTTTTGAA+AGG | + | chr5_2:6570641-6570660 | None:intergenic | 20.0% |
| !!! | AATTGAATTTAGCTTTTGAA+AGG | + | chr5_2:6570641-6570660 | None:intergenic | 20.0% |
| ! | CAATTAAGAAATGTTCTTGA+AGG | + | chr5_2:6570534-6570553 | None:intergenic | 25.0% |
| ! | CTTCAAGAACATTTCTTAAT+TGG | - | chr5_2:6570532-6570551 | Msa0752840:intron | 25.0% |
| ! | TTTGAAAGGTAAAACACAAA+AGG | + | chr5_2:6570627-6570646 | None:intergenic | 25.0% |
| ! | CAATTAAGAAATGTTCTTGA+AGG | + | chr5_2:6570534-6570553 | None:intergenic | 25.0% |
| ! | CTTCAAGAACATTTCTTAAT+TGG | - | chr5_2:6570532-6570551 | Msa0752840:intron | 25.0% |
| ! | TTTGAAAGGTAAAACACAAA+AGG | + | chr5_2:6570627-6570646 | None:intergenic | 25.0% |
| TTACTAGTTCGAAATAGTGT+AGG | - | chr5_2:6570866-6570885 | Msa0752840:CDS | 30.0% | |
| AAAACACACTCAAAACAAGT+TGG | + | chr5_2:6571004-6571023 | None:intergenic | 30.0% | |
| !!! | ACTTGTTTTGAGTGTGTTTT+AGG | - | chr5_2:6571004-6571023 | Msa0752840:CDS | 30.0% |
| TAACTTCCAAAACCTAATTG+TGG | - | chr5_2:6571037-6571056 | Msa0752840:CDS | 30.0% | |
| ! | ATGAAACCACAATTAGGTTT+TGG | + | chr5_2:6571046-6571065 | None:intergenic | 30.0% |
| CAACATATGAAACCACAATT+AGG | + | chr5_2:6571052-6571071 | None:intergenic | 30.0% | |
| TTACTAGTTCGAAATAGTGT+AGG | - | chr5_2:6570866-6570885 | Msa0752840:CDS | 30.0% | |
| AAAACACACTCAAAACAAGT+TGG | + | chr5_2:6571004-6571023 | None:intergenic | 30.0% | |
| !!! | ACTTGTTTTGAGTGTGTTTT+AGG | - | chr5_2:6571004-6571023 | Msa0752840:CDS | 30.0% |
| TAACTTCCAAAACCTAATTG+TGG | - | chr5_2:6571037-6571056 | Msa0752840:CDS | 30.0% | |
| ! | ATGAAACCACAATTAGGTTT+TGG | + | chr5_2:6571046-6571065 | None:intergenic | 30.0% |
| CAACATATGAAACCACAATT+AGG | + | chr5_2:6571052-6571071 | None:intergenic | 30.0% | |
| TTGGAACAGTATGATGTGTA+TGG | - | chr5_2:6570246-6570265 | Msa0752840:CDS | 35.0% | |
| TGGAACAGTATGATGTGTAT+GGG | - | chr5_2:6570247-6570266 | Msa0752840:CDS | 35.0% | |
| ATGTGTATGGGAACCTATTT+GGG | - | chr5_2:6570259-6570278 | Msa0752840:CDS | 35.0% | |
| ! | CTTTTCTTTGTCGTAACAGA+TGG | + | chr5_2:6570433-6570452 | None:intergenic | 35.0% |
| GTTACGACAAAGAAAAGAGA+TGG | - | chr5_2:6570436-6570455 | Msa0752840:intron | 35.0% | |
| ATGGACCATTTCAGTTTCAT+GGG | - | chr5_2:6570455-6570474 | Msa0752840:intron | 35.0% | |
| AAAACCCCATGAAACTGAAA+TGG | + | chr5_2:6570463-6570482 | None:intergenic | 35.0% | |
| !! | TTTGCTGTTCAGATATTTCG+CGG | - | chr5_2:6570480-6570499 | Msa0752840:intron | 35.0% |
| !! | TTGAAGGCATTTCAATTTCG+CGG | + | chr5_2:6570518-6570537 | None:intergenic | 35.0% |
| !!! | AAGGATTAGCCATTTTCCAT+CGG | + | chr5_2:6570722-6570741 | None:intergenic | 35.0% |
| GTTCGAAATAGTGTAGGATA+CGG | - | chr5_2:6570872-6570891 | Msa0752840:CDS | 35.0% | |
| GTGATGAAGTCAAACAAGAA+AGG | - | chr5_2:6571156-6571175 | Msa0752840:CDS | 35.0% | |
| GTCAAACAAGAAAGGAAGAA+TGG | - | chr5_2:6571164-6571183 | Msa0752840:CDS | 35.0% | |
| GATGTGGGTATATGTAAAGA+TGG | - | chr5_2:6571192-6571211 | Msa0752840:CDS | 35.0% | |
| TTGGAACAGTATGATGTGTA+TGG | - | chr5_2:6570246-6570265 | Msa0752840:CDS | 35.0% | |
| TGGAACAGTATGATGTGTAT+GGG | - | chr5_2:6570247-6570266 | Msa0752840:CDS | 35.0% | |
| ATGTGTATGGGAACCTATTT+GGG | - | chr5_2:6570259-6570278 | Msa0752840:CDS | 35.0% | |
| ! | CTTTTCTTTGTCGTAACAGA+TGG | + | chr5_2:6570433-6570452 | None:intergenic | 35.0% |
| GTTACGACAAAGAAAAGAGA+TGG | - | chr5_2:6570436-6570455 | Msa0752840:intron | 35.0% | |
| ATGGACCATTTCAGTTTCAT+GGG | - | chr5_2:6570455-6570474 | Msa0752840:intron | 35.0% | |
| AAAACCCCATGAAACTGAAA+TGG | + | chr5_2:6570463-6570482 | None:intergenic | 35.0% | |
| !! | TTTGCTGTTCAGATATTTCG+CGG | - | chr5_2:6570480-6570499 | Msa0752840:intron | 35.0% |
| !! | TTGAAGGCATTTCAATTTCG+CGG | + | chr5_2:6570518-6570537 | None:intergenic | 35.0% |
| !!! | AAGGATTAGCCATTTTCCAT+CGG | + | chr5_2:6570722-6570741 | None:intergenic | 35.0% |
| GTTCGAAATAGTGTAGGATA+CGG | - | chr5_2:6570872-6570891 | Msa0752840:CDS | 35.0% | |
| GTGATGAAGTCAAACAAGAA+AGG | - | chr5_2:6571156-6571175 | Msa0752840:CDS | 35.0% | |
| GTCAAACAAGAAAGGAAGAA+TGG | - | chr5_2:6571164-6571183 | Msa0752840:CDS | 35.0% | |
| GATGTGGGTATATGTAAAGA+TGG | - | chr5_2:6571192-6571211 | Msa0752840:CDS | 35.0% | |
| AATAGTCCACGTGTGTTTCT+TGG | - | chr5_2:6570227-6570246 | Msa0752840:CDS | 40.0% | |
| GATGTGTATGGGAACCTATT+TGG | - | chr5_2:6570258-6570277 | Msa0752840:CDS | 40.0% | |
| AGTGATACCAATGGAGTTAC+TGG | + | chr5_2:6570300-6570319 | None:intergenic | 40.0% | |
| CGAGCTTCATTGGTATTGTA+AGG | + | chr5_2:6570386-6570405 | None:intergenic | 40.0% | |
| GATGGACCATTTCAGTTTCA+TGG | - | chr5_2:6570454-6570473 | Msa0752840:intron | 40.0% | |
| TGGACCATTTCAGTTTCATG+GGG | - | chr5_2:6570456-6570475 | Msa0752840:intron | 40.0% | |
| ! | TTGCTGTTCAGATATTTCGC+GGG | - | chr5_2:6570481-6570500 | Msa0752840:intron | 40.0% |
| !! | TGAAGGCATTTCAATTTCGC+GGG | + | chr5_2:6570517-6570536 | None:intergenic | 40.0% |
| AACACAAAAGGCTTCTGACA+CGG | + | chr5_2:6570615-6570634 | None:intergenic | 40.0% | |
| ACAACTTTGTCAAGAGCAGA+AGG | + | chr5_2:6570741-6570760 | None:intergenic | 40.0% | |
| AATATATTTGGCAGGCTCCA+AGG | - | chr5_2:6571118-6571137 | Msa0752840:CDS | 40.0% | |
| CAAGAAAGGAAGAATGGTGA+TGG | - | chr5_2:6571170-6571189 | Msa0752840:CDS | 40.0% | |
| GGGTATATGTAAAGATGGTG+AGG | - | chr5_2:6571197-6571216 | Msa0752840:CDS | 40.0% | |
| AATAGTCCACGTGTGTTTCT+TGG | - | chr5_2:6570227-6570246 | Msa0752840:CDS | 40.0% | |
| GATGTGTATGGGAACCTATT+TGG | - | chr5_2:6570258-6570277 | Msa0752840:CDS | 40.0% | |
| AGTGATACCAATGGAGTTAC+TGG | + | chr5_2:6570300-6570319 | None:intergenic | 40.0% | |
| CGAGCTTCATTGGTATTGTA+AGG | + | chr5_2:6570386-6570405 | None:intergenic | 40.0% | |
| GATGGACCATTTCAGTTTCA+TGG | - | chr5_2:6570454-6570473 | Msa0752840:intron | 40.0% | |
| TGGACCATTTCAGTTTCATG+GGG | - | chr5_2:6570456-6570475 | Msa0752840:intron | 40.0% | |
| ! | TTGCTGTTCAGATATTTCGC+GGG | - | chr5_2:6570481-6570500 | Msa0752840:intron | 40.0% |
| !! | TGAAGGCATTTCAATTTCGC+GGG | + | chr5_2:6570517-6570536 | None:intergenic | 40.0% |
| AACACAAAAGGCTTCTGACA+CGG | + | chr5_2:6570615-6570634 | None:intergenic | 40.0% | |
| ACAACTTTGTCAAGAGCAGA+AGG | + | chr5_2:6570741-6570760 | None:intergenic | 40.0% | |
| AATATATTTGGCAGGCTCCA+AGG | - | chr5_2:6571118-6571137 | Msa0752840:CDS | 40.0% | |
| CAAGAAAGGAAGAATGGTGA+TGG | - | chr5_2:6571170-6571189 | Msa0752840:CDS | 40.0% | |
| GGGTATATGTAAAGATGGTG+AGG | - | chr5_2:6571197-6571216 | Msa0752840:CDS | 40.0% | |
| ACTGTTCCAAGAAACACACG+TGG | + | chr5_2:6570236-6570255 | None:intergenic | 45.0% | |
| AGCTCATCCAGTAACTCCAT+TGG | - | chr5_2:6570290-6570309 | Msa0752840:intron | 45.0% | |
| AGATGGTGCAGTGATACCAA+TGG | + | chr5_2:6570309-6570328 | None:intergenic | 45.0% | |
| !! | GAAGGCATTTCAATTTCGCG+GGG | + | chr5_2:6570516-6570535 | None:intergenic | 45.0% |
| ACACAAAAGGCTTCTGACAC+GGG | + | chr5_2:6570614-6570633 | None:intergenic | 45.0% | |
| !! | AAAGCATCGTGTTCCTCATC+CGG | - | chr5_2:6570692-6570711 | Msa0752840:CDS | 45.0% |
| GTACTCTATCCCATAGATGC+GGG | + | chr5_2:6570782-6570801 | None:intergenic | 45.0% | |
| CGTACTCTATCCCATAGATG+CGG | + | chr5_2:6570783-6570802 | None:intergenic | 45.0% | |
| !! | AGGAAGAATGGTGATGGATG+TGG | - | chr5_2:6571176-6571195 | Msa0752840:CDS | 45.0% |
| !! | GGAAGAATGGTGATGGATGT+GGG | - | chr5_2:6571177-6571196 | Msa0752840:CDS | 45.0% |
| ACTGTTCCAAGAAACACACG+TGG | + | chr5_2:6570236-6570255 | None:intergenic | 45.0% | |
| AGCTCATCCAGTAACTCCAT+TGG | - | chr5_2:6570290-6570309 | Msa0752840:intron | 45.0% | |
| AGATGGTGCAGTGATACCAA+TGG | + | chr5_2:6570309-6570328 | None:intergenic | 45.0% | |
| !! | GAAGGCATTTCAATTTCGCG+GGG | + | chr5_2:6570516-6570535 | None:intergenic | 45.0% |
| ACACAAAAGGCTTCTGACAC+GGG | + | chr5_2:6570614-6570633 | None:intergenic | 45.0% | |
| !! | AAAGCATCGTGTTCCTCATC+CGG | - | chr5_2:6570692-6570711 | Msa0752840:CDS | 45.0% |
| GTACTCTATCCCATAGATGC+GGG | + | chr5_2:6570782-6570801 | None:intergenic | 45.0% | |
| CGTACTCTATCCCATAGATG+CGG | + | chr5_2:6570783-6570802 | None:intergenic | 45.0% | |
| !! | AGGAAGAATGGTGATGGATG+TGG | - | chr5_2:6571176-6571195 | Msa0752840:CDS | 45.0% |
| !! | GGAAGAATGGTGATGGATGT+GGG | - | chr5_2:6571177-6571196 | Msa0752840:CDS | 45.0% |
| GAGCTGCAAGAAGCCCAAAT+AGG | + | chr5_2:6570275-6570294 | None:intergenic | 50.0% | |
| ATCACTGCACCATCTTGACG+TGG | - | chr5_2:6570314-6570333 | Msa0752840:intron | 50.0% | |
| TTGGCTCAACCACGTCAAGA+TGG | + | chr5_2:6570326-6570345 | None:intergenic | 50.0% | |
| CTTGTGGCATTCGGGAAGAT+TGG | + | chr5_2:6570345-6570364 | None:intergenic | 50.0% | |
| CTTCCACTCTTGTGGCATTC+GGG | + | chr5_2:6570353-6570372 | None:intergenic | 50.0% | |
| GCTTCCACTCTTGTGGCATT+CGG | + | chr5_2:6570354-6570373 | None:intergenic | 50.0% | |
| ! | TTGAAGCGCTTCCACTCTTG+TGG | + | chr5_2:6570361-6570380 | None:intergenic | 50.0% |
| TCCGGAATGCCGATGGAAAA+TGG | - | chr5_2:6570710-6570729 | Msa0752840:CDS | 50.0% | |
| !! | GCCATTTTCCATCGGCATTC+CGG | + | chr5_2:6570714-6570733 | None:intergenic | 50.0% |
| ACTCTGCAGCAGTTTCTCCT+TGG | + | chr5_2:6571138-6571157 | None:intergenic | 50.0% | |
| GAGCTGCAAGAAGCCCAAAT+AGG | + | chr5_2:6570275-6570294 | None:intergenic | 50.0% | |
| ATCACTGCACCATCTTGACG+TGG | - | chr5_2:6570314-6570333 | Msa0752840:intron | 50.0% | |
| TTGGCTCAACCACGTCAAGA+TGG | + | chr5_2:6570326-6570345 | None:intergenic | 50.0% | |
| CTTGTGGCATTCGGGAAGAT+TGG | + | chr5_2:6570345-6570364 | None:intergenic | 50.0% | |
| CTTCCACTCTTGTGGCATTC+GGG | + | chr5_2:6570353-6570372 | None:intergenic | 50.0% | |
| GCTTCCACTCTTGTGGCATT+CGG | + | chr5_2:6570354-6570373 | None:intergenic | 50.0% | |
| ! | TTGAAGCGCTTCCACTCTTG+TGG | + | chr5_2:6570361-6570380 | None:intergenic | 50.0% |
| TCCGGAATGCCGATGGAAAA+TGG | - | chr5_2:6570710-6570729 | Msa0752840:CDS | 50.0% | |
| !! | GCCATTTTCCATCGGCATTC+CGG | + | chr5_2:6570714-6570733 | None:intergenic | 50.0% |
| ACTCTGCAGCAGTTTCTCCT+TGG | + | chr5_2:6571138-6571157 | None:intergenic | 50.0% | |
| CTTCCCGAATGCCACAAGAG+TGG | - | chr5_2:6570347-6570366 | Msa0752840:intron | 55.0% | |
| CCTGCTGAGTCGAGCTTCAT+TGG | + | chr5_2:6570396-6570415 | None:intergenic | 55.0% | |
| CCAATGAAGCTCGACTCAGC+AGG | - | chr5_2:6570393-6570412 | Msa0752840:intron | 55.0% | |
| !! | GACACGGGTGTCGAGTAACA+GGG | + | chr5_2:6570599-6570618 | None:intergenic | 55.0% |
| !! | TGACACGGGTGTCGAGTAAC+AGG | + | chr5_2:6570600-6570619 | None:intergenic | 55.0% |
| TTCCTCATCCGGAATGCCGA+TGG | - | chr5_2:6570703-6570722 | Msa0752840:CDS | 55.0% | |
| TTCCATCGGCATTCCGGATG+AGG | + | chr5_2:6570708-6570727 | None:intergenic | 55.0% | |
| AGAAGCCAGACCCGCATCTA+TGG | - | chr5_2:6570769-6570788 | Msa0752840:CDS | 55.0% | |
| GAAGCCAGACCCGCATCTAT+GGG | - | chr5_2:6570770-6570789 | Msa0752840:CDS | 55.0% | |
| CTATCCCATAGATGCGGGTC+TGG | + | chr5_2:6570777-6570796 | None:intergenic | 55.0% | |
| CTTCCCGAATGCCACAAGAG+TGG | - | chr5_2:6570347-6570366 | Msa0752840:intron | 55.0% | |
| CCTGCTGAGTCGAGCTTCAT+TGG | + | chr5_2:6570396-6570415 | None:intergenic | 55.0% | |
| CCAATGAAGCTCGACTCAGC+AGG | - | chr5_2:6570393-6570412 | Msa0752840:intron | 55.0% | |
| !! | GACACGGGTGTCGAGTAACA+GGG | + | chr5_2:6570599-6570618 | None:intergenic | 55.0% |
| !! | TGACACGGGTGTCGAGTAAC+AGG | + | chr5_2:6570600-6570619 | None:intergenic | 55.0% |
| TTCCTCATCCGGAATGCCGA+TGG | - | chr5_2:6570703-6570722 | Msa0752840:CDS | 55.0% | |
| TTCCATCGGCATTCCGGATG+AGG | + | chr5_2:6570708-6570727 | None:intergenic | 55.0% | |
| AGAAGCCAGACCCGCATCTA+TGG | - | chr5_2:6570769-6570788 | Msa0752840:CDS | 55.0% | |
| GAAGCCAGACCCGCATCTAT+GGG | - | chr5_2:6570770-6570789 | Msa0752840:CDS | 55.0% | |
| CTATCCCATAGATGCGGGTC+TGG | + | chr5_2:6570777-6570796 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 6570195 | 6571233 | 6570195 | ID=Msa0752840;Name=Msa0752840 |
| chr5_2 | mRNA | 6570195 | 6571233 | 6570195 | ID=Msa0752840-mRNA-1;Parent=Msa0752840;Name=Msa0752840-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|2|0|222 |
| chr5_2 | exon | 6570667 | 6571233 | 6570667 | ID=Msa0752840-mRNA-1:exon:2800;Parent=Msa0752840-mRNA-1 |
| chr5_2 | exon | 6570195 | 6570296 | 6570195 | ID=Msa0752840-mRNA-1:exon:2799;Parent=Msa0752840-mRNA-1 |
| chr5_2 | CDS | 6570667 | 6571233 | 6570667 | ID=Msa0752840-mRNA-1:cds;Parent=Msa0752840-mRNA-1 |
| chr5_2 | CDS | 6570195 | 6570296 | 6570195 | ID=Msa0752840-mRNA-1:cds;Parent=Msa0752840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
