Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714000 | AES94554.2 | 97.283 | 368 | 10 | 0 | 3 | 370 | 47 | 414 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714000 | sp|Q9FJX5|BT4_ARATH | 64.722 | 360 | 115 | 2 | 11 | 369 | 20 | 368 | 3.74e-176 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714000 | G7K3T4 | 97.283 | 368 | 10 | 0 | 3 | 370 | 47 | 414 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0714000 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714000 | Msa0835330 | 0.921507 | 3.274775e-88 | -8.615850e-47 |
| Msa0714000 | Msa1399990 | 0.988982 | 3.318909e-176 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714000 | MtrunA17_Chr5g0401281 | 97.283 | 368 | 10 | 0 | 3 | 370 | 8 | 375 | 0.0 | 751 |
| Msa0714000 | MtrunA17_Chr4g0058071 | 44.781 | 297 | 159 | 5 | 63 | 355 | 17 | 312 | 7.78e-83 | 256 |
| Msa0714000 | MtrunA17_Chr3g0116501 | 39.216 | 204 | 123 | 1 | 131 | 334 | 1 | 203 | 1.95e-51 | 170 |
| Msa0714000 | MtrunA17_Chr4g0000031 | 34.426 | 122 | 66 | 4 | 243 | 364 | 1598 | 1705 | 3.26e-15 | 77.4 |
| Msa0714000 | MtrunA17_Chr3g0125321 | 29.412 | 153 | 101 | 3 | 76 | 226 | 97 | 244 | 5.01e-13 | 68.6 |
| Msa0714000 | MtrunA17_Chr5g0438991 | 38.356 | 73 | 44 | 1 | 273 | 345 | 886 | 957 | 1.27e-12 | 69.3 |
| Msa0714000 | MtrunA17_Chr3g0138411 | 39.506 | 81 | 47 | 2 | 274 | 353 | 1119 | 1198 | 4.38e-12 | 67.8 |
| Msa0714000 | MtrunA17_Chr6g0456861 | 38.889 | 72 | 43 | 1 | 274 | 345 | 692 | 762 | 6.98e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714000 | AT5G67480.1 | 64.722 | 360 | 115 | 2 | 11 | 369 | 20 | 368 | 3.80e-177 | 497 |
| Msa0714000 | AT5G67480.3 | 64.722 | 360 | 115 | 2 | 11 | 369 | 20 | 368 | 3.80e-177 | 497 |
| Msa0714000 | AT5G67480.2 | 64.722 | 360 | 115 | 2 | 11 | 369 | 31 | 379 | 4.83e-177 | 497 |
| Msa0714000 | AT4G37610.1 | 60.671 | 328 | 127 | 2 | 41 | 367 | 34 | 360 | 3.11e-149 | 426 |
| Msa0714000 | AT1G05690.1 | 50.139 | 361 | 166 | 4 | 4 | 360 | 1 | 351 | 1.56e-111 | 330 |
| Msa0714000 | AT3G48360.1 | 43.478 | 322 | 164 | 8 | 56 | 361 | 28 | 347 | 8.04e-79 | 246 |
| Msa0714000 | AT5G63160.1 | 43.450 | 313 | 164 | 7 | 61 | 361 | 24 | 335 | 2.92e-75 | 237 |
| Msa0714000 | AT3G48360.2 | 45.517 | 290 | 143 | 6 | 56 | 331 | 28 | 316 | 4.36e-73 | 231 |
| Msa0714000 | AT5G63160.2 | 45.745 | 282 | 141 | 6 | 61 | 331 | 24 | 304 | 9.21e-71 | 224 |
| Msa0714000 | AT5G63160.3 | 44.622 | 251 | 128 | 7 | 120 | 361 | 2 | 250 | 3.10e-59 | 193 |
| Msa0714000 | AT3G48360.3 | 43.621 | 243 | 123 | 7 | 131 | 361 | 1 | 241 | 4.55e-58 | 189 |
| Msa0714000 | AT1G79000.2 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 5.86e-15 | 77.0 |
| Msa0714000 | AT1G79000.1 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 6.27e-15 | 77.0 |
| Msa0714000 | AT1G79000.3 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1546 | 1669 | 6.31e-15 | 77.0 |
| Msa0714000 | AT1G16710.2 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1550 | 1673 | 8.96e-13 | 70.5 |
| Msa0714000 | AT1G16710.3 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.46e-13 | 70.5 |
| Msa0714000 | AT1G16710.10 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.46e-13 | 70.5 |
| Msa0714000 | AT1G16710.8 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.46e-13 | 70.5 |
| Msa0714000 | AT1G16710.7 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.46e-13 | 70.5 |
| Msa0714000 | AT1G16710.1 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1579 | 1702 | 9.48e-13 | 70.5 |
| Msa0714000 | AT1G16710.6 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 9.85e-13 | 70.5 |
| Msa0714000 | AT1G16710.4 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 9.85e-13 | 70.5 |
| Msa0714000 | AT1G16710.5 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 9.85e-13 | 70.5 |
| Msa0714000 | AT3G12980.1 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1581 | 1661 | 4.79e-11 | 65.1 |
| Msa0714000 | AT3G12980.2 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1500 | 1580 | 5.11e-11 | 65.1 |
Find 98 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATTAGATGGACAATTT+TGG | 0.186306 | 5_1:+6574997 | Msa0714000:CDS |
| AATATATTGAAGATTGATTT+TGG | 0.190174 | 5_1:+6575307 | Msa0714000:three_prime_UTR |
| GGCGATCGATCTCAATCTTT+GGG | 0.258443 | 5_1:+6573627 | Msa0714000:CDS |
| TGGCGATCGATCTCAATCTT+TGG | 0.276993 | 5_1:+6573626 | Msa0714000:CDS |
| TTCGATATTTGTATTCTTCC+TGG | 0.281886 | 5_1:+6573678 | Msa0714000:CDS |
| TTTCTTTCAAGGTTAGATTA+AGG | 0.291505 | 5_1:+6570957 | Msa0714000:five_prime_UTR |
| TATTCCTTGAATTGAAAGTT+TGG | 0.294590 | 5_1:-6570934 | None:intergenic |
| CAATCTTCAATATATTGATT+TGG | 0.319165 | 5_1:-6575300 | None:intergenic |
| ATCTTGAAAACAAGAGGAAT+TGG | 0.329795 | 5_1:+6575028 | Msa0714000:CDS |
| AGAAAAGAAGAGAGGAATTC+CGG | 0.333093 | 5_1:-6570893 | None:intergenic |
| AAGCAATTCAAGCCCTTTGC+AGG | 0.347578 | 5_1:-6574717 | None:intergenic |
| CTGTCAGTGTAGTTGTTTGA+TGG | 0.354563 | 5_1:-6570775 | None:intergenic |
| AGTTCCAAACTTTCAATTCA+AGG | 0.358112 | 5_1:+6570930 | Msa0714000:five_prime_UTR |
| TTGGGATTGCACCATGCTTT+CGG | 0.361459 | 5_1:+6575047 | Msa0714000:CDS |
| AAAGAACTTCAAAACTGTTT+CGG | 0.374386 | 5_1:+6574338 | Msa0714000:CDS |
| AGTTCTAGAAAAGGAAATTC+TGG | 0.390373 | 5_1:+6574398 | Msa0714000:CDS |
| TTCAAGGAATATTTCTTTCA+AGG | 0.392170 | 5_1:+6570946 | Msa0714000:five_prime_UTR |
| CGCATACTCGCAAGGATAAC+CGG | 0.402463 | 5_1:-6573015 | None:intergenic |
| GCAAGAAAGACGAAATTAGA+TGG | 0.406485 | 5_1:+6574987 | Msa0714000:CDS |
| AAAGGAACTCTACAGAAATC+TGG | 0.408140 | 5_1:-6574842 | None:intergenic |
| TGTATTATTATAGTAAGAAA+TGG | 0.409631 | 5_1:+6575154 | Msa0714000:three_prime_UTR |
| ATGTGAACAGAAGCTAGAAT+TGG | 0.410891 | 5_1:+6574221 | Msa0714000:CDS |
| AGAGATGGTTGTCGAACTAT+TGG | 0.415706 | 5_1:+6574647 | Msa0714000:CDS |
| GGTTGCAAGTTGAGAGTCCC+TGG | 0.418562 | 5_1:+6574755 | Msa0714000:CDS |
| CTAGTTCACATTTGTAGAGA+TGG | 0.440223 | 5_1:+6574632 | Msa0714000:CDS |
| CGAGGCGAAGGAGGTGGTAT+CGG | 0.446905 | 5_1:-6572981 | None:intergenic |
| TCTGTAGAGTTCCTTTGTGC+AGG | 0.450851 | 5_1:+6574849 | Msa0714000:CDS |
| TCTTGAAAACAAGAGGAATT+GGG | 0.451569 | 5_1:+6575029 | Msa0714000:CDS |
| TTCAGCATGCCTCTCAATAC+AGG | 0.459183 | 5_1:-6573581 | None:intergenic |
| TGAGATCGATCGCCACCGAT+TGG | 0.468351 | 5_1:-6573618 | None:intergenic |
| GAAAAGAAGAGAGGAATTCC+GGG | 0.470148 | 5_1:-6570892 | None:intergenic |
| GGAATTTGTCCTACATTTGT+TGG | 0.476702 | 5_1:+6574158 | Msa0714000:CDS |
| GAGTCACCCAGTTCTAGAAA+AGG | 0.485308 | 5_1:+6574389 | Msa0714000:CDS |
| AGAACAAAATAAACAAATGT+TGG | 0.495391 | 5_1:-6575246 | None:intergenic |
| GTTTGCATTAATACTGATAA+CGG | 0.495992 | 5_1:+6573137 | Msa0714000:CDS |
| TGTGAACAGAAGCTAGAATT+GGG | 0.501782 | 5_1:+6574222 | Msa0714000:CDS |
| ACACAGCTGCTTCGCCCTCT+CGG | 0.509722 | 5_1:-6573056 | None:intergenic |
| GAGCAACAATTCATCCTTGA+GGG | 0.511620 | 5_1:-6575177 | None:intergenic |
| TTACGAGAAAGAAGAAATGA+AGG | 0.513436 | 5_1:+6574137 | Msa0714000:CDS |
| TTCTGCAACAAGAGATCTGT+GGG | 0.515476 | 5_1:+6573082 | Msa0714000:CDS |
| TCGCCTCGATCAGCAGCAAC+CGG | 0.515743 | 5_1:+6572996 | Msa0714000:CDS |
| ATCTAATAGTTCTATATCCC+CGG | 0.516716 | 5_1:-6575089 | None:intergenic |
| GTTGCAAGTTGAGAGTCCCT+GGG | 0.520761 | 5_1:+6574756 | Msa0714000:CDS |
| TCTGTTTGAAGAGATTTCTA+CGG | 0.524665 | 5_1:-6570845 | None:intergenic |
| CACATTCACGCTTCAAGTGA+GGG | 0.529306 | 5_1:-6574203 | None:intergenic |
| GTGCTCATTGCAAGAGGATG+TGG | 0.529329 | 5_1:+6574783 | Msa0714000:CDS |
| ATAAGCTGATGGCTAACATT+CGG | 0.529455 | 5_1:+6572940 | Msa0714000:exon |
| TATAGTTCATTTAAAAGTAA+CGG | 0.531246 | 5_1:-6575274 | None:intergenic |
| CAAGAGGATGTGGCAACTGT+TGG | 0.537744 | 5_1:+6574793 | Msa0714000:CDS |
| ATTGATTGATCAGAGTAAGA+AGG | 0.539090 | 5_1:+6574547 | Msa0714000:intron |
| CTTTGAAGTCTTTATCATGC+GGG | 0.542449 | 5_1:-6574670 | None:intergenic |
| AAAACTGTTTCGGAGTCAGA+AGG | 0.543714 | 5_1:+6574348 | Msa0714000:CDS |
| GAGAAAGCACCAACAAATGT+AGG | 0.546221 | 5_1:-6574167 | None:intergenic |
| ATAGTAAGAAATGGCCCTCA+AGG | 0.546989 | 5_1:+6575163 | Msa0714000:three_prime_UTR |
| AGCAAGCAAATCGTTCCAAT+CGG | 0.549306 | 5_1:+6573603 | Msa0714000:CDS |
| GTTGCTGCTGATCGAGGCGA+AGG | 0.550246 | 5_1:-6572993 | None:intergenic |
| TTTGCAATTATACGATGCAA+TGG | 0.552736 | 5_1:+6574604 | Msa0714000:CDS |
| GTAGGTATACTTCCTGCAAA+GGG | 0.554458 | 5_1:+6574705 | Msa0714000:CDS |
| GCTGATCGAGGCGAAGGAGG+TGG | 0.554736 | 5_1:-6572987 | None:intergenic |
| AAGAAATGAGAAAAGAAGAG+AGG | 0.555753 | 5_1:-6570901 | None:intergenic |
| ATCAGTATTAATGCAAACAT+CGG | 0.559796 | 5_1:-6573132 | None:intergenic |
| AGGAAGTATACCTACACGGC+TGG | 0.561333 | 5_1:-6574697 | None:intergenic |
| GAAAAGATCTTGAAAACAAG+AGG | 0.566400 | 5_1:+6575022 | Msa0714000:CDS |
| GCTTTGAAGTCTTTATCATG+CGG | 0.567781 | 5_1:-6574671 | None:intergenic |
| TTCATCGCCGCATACTCGCA+AGG | 0.575928 | 5_1:-6573023 | None:intergenic |
| ATGAATAATTTATCACCGAG+AGG | 0.575964 | 5_1:+6573041 | Msa0714000:CDS |
| TTGTTTACTTTAAAGTAGAG+AGG | 0.577349 | 5_1:-6575199 | None:intergenic |
| GCTGCTGATCGAGGCGAAGG+AGG | 0.588376 | 5_1:-6572990 | None:intergenic |
| TGTAGGTATACTTCCTGCAA+AGG | 0.593266 | 5_1:+6574704 | Msa0714000:CDS |
| TTGATCAGAGTAAGAAGGAG+AGG | 0.595421 | 5_1:+6574552 | Msa0714000:intron |
| TCACATTCACGCTTCAAGTG+AGG | 0.596344 | 5_1:-6574204 | None:intergenic |
| AAGTAAACAATATATAGCAT+AGG | 0.599958 | 5_1:+6575212 | Msa0714000:three_prime_UTR |
| CGGTTATCCTTGCGAGTATG+CGG | 0.602040 | 5_1:+6573016 | Msa0714000:CDS |
| CTGTTTCGGAGTCAGAAGGA+TGG | 0.605228 | 5_1:+6574352 | Msa0714000:CDS |
| AAGCAAATCGTTCCAATCGG+TGG | 0.607764 | 5_1:+6573606 | Msa0714000:CDS |
| AGAAGTAATTCACATACCCC+CGG | 0.610334 | 5_1:+6570874 | Msa0714000:five_prime_UTR |
| TCAAAGCAAACCAGCCGTGT+AGG | 0.611970 | 5_1:+6574687 | Msa0714000:CDS |
| TGTCATTGTGGCCGAAAGCA+TGG | 0.612906 | 5_1:-6575058 | None:intergenic |
| TAACCGGTTGCTGCTGATCG+AGG | 0.614451 | 5_1:-6572999 | None:intergenic |
| AGCAGTGAAGCATAAGCTGA+TGG | 0.620226 | 5_1:+6572929 | Msa0714000:exon |
| GGGGTTGTGCTCATTGCAAG+AGG | 0.622565 | 5_1:+6574777 | Msa0714000:CDS |
| AAAACTCGTACTGCATCATG+TGG | 0.623793 | 5_1:-6573653 | None:intergenic |
| GTGGCTTCTCCTGTATTGAG+AGG | 0.626268 | 5_1:+6573572 | Msa0714000:CDS |
| TACATCAACTAGATTATCCA+CGG | 0.627170 | 5_1:-6574253 | None:intergenic |
| GCGATCGATCTCAATCTTTG+GGG | 0.627705 | 5_1:+6573628 | Msa0714000:CDS |
| GGAGCAACAATTCATCCTTG+AGG | 0.635350 | 5_1:-6575178 | None:intergenic |
| CTTCTGCAACAAGAGATCTG+TGG | 0.636785 | 5_1:+6573081 | Msa0714000:CDS |
| TGAATAATTTATCACCGAGA+GGG | 0.647099 | 5_1:+6573042 | Msa0714000:CDS |
| TGCATTAATACTGATAACGG+TGG | 0.661014 | 5_1:+6573140 | Msa0714000:CDS |
| TTGCAAGTTGAGAGTCCCTG+GGG | 0.661286 | 5_1:+6574757 | Msa0714000:CDS |
| TAATATTGTTACCTGCACAA+AGG | 0.667930 | 5_1:-6574860 | None:intergenic |
| AAAAGAAGAGAGGAATTCCG+GGG | 0.681139 | 5_1:-6570891 | None:intergenic |
| AGAATTGGGTTTACTCACCG+TGG | 0.691467 | 5_1:+6574236 | Msa0714000:CDS |
| TTGCAGGAAGTATACCTACA+CGG | 0.699708 | 5_1:-6574701 | None:intergenic |
| TGCAAGTTGAGAGTCCCTGG+GGG | 0.717689 | 5_1:+6574758 | Msa0714000:CDS |
| CATTACTGTGTGATGCTCCG+CGG | 0.722450 | 5_1:+6574286 | Msa0714000:CDS |
| TGACAAATGAAACTGAGCCG+CGG | 0.725061 | 5_1:-6574303 | None:intergenic |
| AAAGAAGAGAGGAATTCCGG+GGG | 0.742234 | 5_1:-6570890 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAATTTCTAATGTT+TGG | - | chr5_1:6572079-6572098 | None:intergenic | 10.0% |
| !! | AAACATTAGAAATTAAAATA+AGG | + | chr5_1:6572078-6572097 | Msa0714000:intron | 10.0% |
| !!! | TTTTTTTTCTTTCTTTTTTT+AGG | - | chr5_1:6572624-6572643 | None:intergenic | 10.0% |
| !! | CAATAACATATTAATATATA+AGG | + | chr5_1:6572682-6572701 | Msa0714000:intron | 10.0% |
| !! | AATAGTTATATAAATAGATA+AGG | - | chr5_1:6572874-6572893 | None:intergenic | 10.0% |
| !! | TAAAATACTTAAGTTTGATA+CGG | - | chr5_1:6572250-6572269 | None:intergenic | 15.0% |
| !!! | AAACTTAAGTATTTTATTCA+AGG | + | chr5_1:6572254-6572273 | Msa0714000:intron | 15.0% |
| !! | TAACTTAATCACATAATAAA+AGG | + | chr5_1:6572450-6572469 | Msa0714000:intron | 15.0% |
| !! | TATCATAATCATACAATAAA+AGG | + | chr5_1:6572743-6572762 | Msa0714000:intron | 15.0% |
| !!! | TATGCAATTAATCTATTTTA+AGG | + | chr5_1:6573353-6573372 | Msa0714000:intron | 15.0% |
| !!! | TAACTTTAAGAAATTTCAAT+CGG | + | chr5_1:6573858-6573877 | Msa0714000:intron | 15.0% |
| !!! | AAAAAAAATTGAGTTTTGTT+TGG | + | chr5_1:6573962-6573981 | Msa0714000:intron | 15.0% |
| !!! | AAAAAAATTGAGTTTTGTTT+GGG | + | chr5_1:6573963-6573982 | Msa0714000:intron | 15.0% |
| !! | TTACACAATAATAGATAATT+AGG | + | chr5_1:6574499-6574518 | Msa0714000:intron | 15.0% |
| !! | TGTATTATTATAGTAAGAAA+TGG | + | chr5_1:6575154-6575173 | Msa0714000:three_prime_UTR | 15.0% |
| !! | TATAGTTCATTTAAAAGTAA+CGG | - | chr5_1:6575277-6575296 | None:intergenic | 15.0% |
| !!! | TTACTTTTAAATGAACTATA+TGG | + | chr5_1:6575277-6575296 | Msa0714000:three_prime_UTR | 15.0% |
| !!! | AATATATTGAAGATTGATTT+TGG | + | chr5_1:6575307-6575326 | Msa0714000:three_prime_UTR | 15.0% |
| !! | GAAAGAAATCTTAATTGAAA+TGG | - | chr5_1:6571007-6571026 | None:intergenic | 20.0% |
| !! | AATTCAACTAATAGTGTTTA+GGG | - | chr5_1:6571686-6571705 | None:intergenic | 20.0% |
| !! | AACAAAACAATTGTCAATTT+AGG | + | chr5_1:6571960-6571979 | Msa0714000:intron | 20.0% |
| !! | ATCTAACAATAAAACATAAG+AGG | + | chr5_1:6572051-6572070 | Msa0714000:intron | 20.0% |
| !!! | TTGCTTTTTTATTTGAATGT+GGG | - | chr5_1:6572106-6572125 | None:intergenic | 20.0% |
| !!! | TTTGCTTTTTTATTTGAATG+TGG | - | chr5_1:6572107-6572126 | None:intergenic | 20.0% |
| !!! | TTCATTTTATAGAAGAATGT+GGG | - | chr5_1:6572139-6572158 | None:intergenic | 20.0% |
| !!! | TTATTTCTACATGATATGAA+TGG | - | chr5_1:6572332-6572351 | None:intergenic | 20.0% |
| !!! | AGCTTATCTTTAATTCTTTT+TGG | + | chr5_1:6572411-6572430 | Msa0714000:intron | 20.0% |
| !! | GTTAAATGTCATATAATATG+TGG | - | chr5_1:6572483-6572502 | None:intergenic | 20.0% |
| !!! | TTTTATTCTGCTGAAATTAA+GGG | - | chr5_1:6572837-6572856 | None:intergenic | 20.0% |
| !!! | TTTTTATTCTGCTGAAATTA+AGG | - | chr5_1:6572838-6572857 | None:intergenic | 20.0% |
| !! | ATTTCAGCAGAATAAAAAAA+AGG | + | chr5_1:6572840-6572859 | Msa0714000:intron | 20.0% |
| !!! | ATGATTTTGAGGTTTATAAA+GGG | - | chr5_1:6573714-6573733 | None:intergenic | 20.0% |
| !!! | TATGATTTTGAGGTTTATAA+AGG | - | chr5_1:6573715-6573734 | None:intergenic | 20.0% |
| !! | ATTTCTTAAAGTTATCCTAT+CGG | - | chr5_1:6573852-6573871 | None:intergenic | 20.0% |
| !!! | AAAAAATTGAGTTTTGTTTG+GGG | + | chr5_1:6573964-6573983 | Msa0714000:intron | 20.0% |
| !!! | TGAAGTTCTTTAGTATTTTA+CGG | - | chr5_1:6574329-6574348 | None:intergenic | 20.0% |
| !! | AAGTAAACAATATATAGCAT+AGG | + | chr5_1:6575212-6575231 | Msa0714000:three_prime_UTR | 20.0% |
| !! | AGAACAAAATAAACAAATGT+TGG | - | chr5_1:6575249-6575268 | None:intergenic | 20.0% |
| !!! | CAATCTTCAATATATTGATT+TGG | - | chr5_1:6575303-6575322 | None:intergenic | 20.0% |
| ! | TATTCCTTGAATTGAAAGTT+TGG | - | chr5_1:6570937-6570956 | None:intergenic | 25.0% |
| ! | TTCAAGGAATATTTCTTTCA+AGG | + | chr5_1:6570946-6570965 | Msa0714000:five_prime_UTR | 25.0% |
| ! | TTTCTTTCAAGGTTAGATTA+AGG | + | chr5_1:6570957-6570976 | Msa0714000:five_prime_UTR | 25.0% |
| !! | AGATTAATTCGTTGATTATC+TGG | + | chr5_1:6571128-6571147 | Msa0714000:intron | 25.0% |
| !! | GTTTTTGTAGATTCTTGATT+TGG | + | chr5_1:6571156-6571175 | Msa0714000:intron | 25.0% |
| !! | TATATCATTGATTGCATGTT+TGG | - | chr5_1:6571503-6571522 | None:intergenic | 25.0% |
| ! | ATACGAAACAGAAACTATTT+GGG | - | chr5_1:6571609-6571628 | None:intergenic | 25.0% |
| ! | TATACGAAACAGAAACTATT+TGG | - | chr5_1:6571610-6571629 | None:intergenic | 25.0% |
| !! | GTTTGAGACTTTAAGTAAAT+AGG | + | chr5_1:6571651-6571670 | Msa0714000:intron | 25.0% |
| ! | GAATTCAACTAATAGTGTTT+AGG | - | chr5_1:6571687-6571706 | None:intergenic | 25.0% |
| ! | ATTGACATGTTACAATTTCA+AGG | - | chr5_1:6571741-6571760 | None:intergenic | 25.0% |
| !! | CTTCATTTTATAGAAGAATG+TGG | - | chr5_1:6572140-6572159 | None:intergenic | 25.0% |
| !!! | TGAAGACTCAATTTTGTTAT+CGG | + | chr5_1:6572155-6572174 | Msa0714000:intron | 25.0% |
| !! | ATTTTTACTCTTTCTCTCTT+TGG | - | chr5_1:6572198-6572217 | None:intergenic | 25.0% |
| !!! | AGGTATGTATTTTGATAAAG+AGG | + | chr5_1:6572300-6572319 | Msa0714000:intron | 25.0% |
| ! | ATTTACAATTGTAACTTACG+AGG | + | chr5_1:6572352-6572371 | Msa0714000:intron | 25.0% |
| ! | AGATAAGCTATATTACAAGT+AGG | - | chr5_1:6572400-6572419 | None:intergenic | 25.0% |
| ! | CATTTAACTGAATAGCTTAT+CGG | + | chr5_1:6572495-6572514 | Msa0714000:intron | 25.0% |
| ! | TTATCCAAATCTATGTGTAA+TGG | + | chr5_1:6572718-6572737 | Msa0714000:intron | 25.0% |
| !! | AATTCTTTTCATTCAGTAGT+TGG | + | chr5_1:6572801-6572820 | Msa0714000:intron | 25.0% |
| ! | ATCAGTATTAATGCAAACAT+CGG | - | chr5_1:6573135-6573154 | None:intergenic | 25.0% |
| ! | GTTTGCATTAATACTGATAA+CGG | + | chr5_1:6573137-6573156 | Msa0714000:CDS | 25.0% |
| ! | TCACTTTATACTATATGATC+AGG | + | chr5_1:6573547-6573566 | Msa0714000:intron | 25.0% |
| !! | CAAACATTCTTATGATTTTG+AGG | - | chr5_1:6573725-6573744 | None:intergenic | 25.0% |
| ! | AACTGTGAAATTGAAACAAA+TGG | + | chr5_1:6573934-6573953 | Msa0714000:intron | 25.0% |
| !!! | AAAAATTGAGTTTTGTTTGG+GGG | + | chr5_1:6573965-6573984 | Msa0714000:intron | 25.0% |
| ! | AAAGAACTTCAAAACTGTTT+CGG | + | chr5_1:6574338-6574357 | Msa0714000:CDS | 25.0% |
| ! | TGATTGAAGAAGAAAATGTA+AGG | + | chr5_1:6574427-6574446 | Msa0714000:intron | 25.0% |
| ! | ATTCAAAAGTAGTTAGACAA+TGG | - | chr5_1:6574525-6574544 | None:intergenic | 25.0% |
| ! | TGATTGTATTTATTTCAGCT+CGG | + | chr5_1:6574898-6574917 | Msa0714000:intron | 25.0% |
| !! | GTAACAAATCTTTTCATTTC+AGG | + | chr5_1:6574936-6574955 | Msa0714000:intron | 25.0% |
| !!! | TTGTTTACTTTAAAGTAGAG+AGG | - | chr5_1:6575202-6575221 | None:intergenic | 25.0% |
| TCTGTTTGAAGAGATTTCTA+CGG | - | chr5_1:6570848-6570867 | None:intergenic | 30.0% | |
| AAGAAATGAGAAAAGAAGAG+AGG | - | chr5_1:6570904-6570923 | None:intergenic | 30.0% | |
| AGTTCCAAACTTTCAATTCA+AGG | + | chr5_1:6570930-6570949 | Msa0714000:five_prime_UTR | 30.0% | |
| !! | ATTCGTTGATTATCTGGTTT+TGG | + | chr5_1:6571134-6571153 | Msa0714000:intron | 30.0% |
| ACTTCATGTTGAGATTTACA+TGG | + | chr5_1:6571285-6571304 | Msa0714000:intron | 30.0% | |
| TACCTTACTGTATGTATGTT+TGG | + | chr5_1:6571350-6571369 | Msa0714000:intron | 30.0% | |
| ATCCAAACATACATACAGTA+AGG | - | chr5_1:6571355-6571374 | None:intergenic | 30.0% | |
| TTAGAGCTTCAATAGAATCA+AGG | - | chr5_1:6571422-6571441 | None:intergenic | 30.0% | |
| TATTGTAATTCTGCCAAACT+CGG | + | chr5_1:6571470-6571489 | Msa0714000:intron | 30.0% | |
| TCTTAGTGATCAATAGTTTC+TGG | + | chr5_1:6571551-6571570 | Msa0714000:intron | 30.0% | |
| CTTAGTGATCAATAGTTTCT+GGG | + | chr5_1:6571552-6571571 | Msa0714000:intron | 30.0% | |
| GTCTCAAACAAATGTACAAT+AGG | - | chr5_1:6571640-6571659 | None:intergenic | 30.0% | |
| GTCAATCAAAATAGTCCTTA+TGG | + | chr5_1:6571755-6571774 | Msa0714000:intron | 30.0% | |
| TAACAGGTAAACTTACCATA+AGG | - | chr5_1:6571773-6571792 | None:intergenic | 30.0% | |
| ! | CTGCATGCTATAATTTTGTA+TGG | + | chr5_1:6571875-6571894 | Msa0714000:intron | 30.0% |
| GTAAAGCATAGAATTTACGT+TGG | + | chr5_1:6571897-6571916 | Msa0714000:intron | 30.0% | |
| !! | TTACGTTGGCTTTAAGATTT+AGG | + | chr5_1:6571911-6571930 | Msa0714000:intron | 30.0% |
| AACAATTGTCAATTTAGGTC+TGG | + | chr5_1:6571965-6571984 | Msa0714000:intron | 30.0% | |
| !! | ACTCAATTTTGTTATCGGTA+TGG | + | chr5_1:6572160-6572179 | Msa0714000:intron | 30.0% |
| AGCTATATTACAAGTAGGTT+TGG | - | chr5_1:6572395-6572414 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGGTACCATGCTAT+TGG | - | chr5_1:6572610-6572629 | None:intergenic | 30.0% |
| CATGATATACTTCAACTCTT+TGG | - | chr5_1:6572650-6572669 | None:intergenic | 30.0% | |
| CACATAGATTTGGATAAGAT+TGG | - | chr5_1:6572715-6572734 | None:intergenic | 30.0% | |
| TAAGCCATTACACATAGATT+TGG | - | chr5_1:6572725-6572744 | None:intergenic | 30.0% | |
| ATGAATAATTTATCACCGAG+AGG | + | chr5_1:6573041-6573060 | Msa0714000:CDS | 30.0% | |
| TGAATAATTTATCACCGAGA+GGG | + | chr5_1:6573042-6573061 | Msa0714000:CDS | 30.0% | |
| TCTTTGAACGAATTAGTAGT+AGG | + | chr5_1:6573298-6573317 | Msa0714000:intron | 30.0% | |
| ! | AGTAGGCTCAAAATTTTCAT+AGG | + | chr5_1:6573315-6573334 | Msa0714000:intron | 30.0% |
| CTTTATACTATATGATCAGG+CGG | + | chr5_1:6573550-6573569 | Msa0714000:intron | 30.0% | |
| TTCGATATTTGTATTCTTCC+TGG | + | chr5_1:6573678-6573697 | Msa0714000:CDS | 30.0% | |
| TAAGAAATTTCAATCGGTAG+TGG | + | chr5_1:6573864-6573883 | Msa0714000:intron | 30.0% | |
| TACTTCGAAATTGATCTACT+CGG | - | chr5_1:6573910-6573929 | None:intergenic | 30.0% | |
| !!! | AAAATTGAGTTTTGTTTGGG+GGG | + | chr5_1:6573966-6573985 | Msa0714000:intron | 30.0% |
| TTACGAGAAAGAAGAAATGA+AGG | + | chr5_1:6574137-6574156 | Msa0714000:CDS | 30.0% | |
| TACATCAACTAGATTATCCA+CGG | - | chr5_1:6574256-6574275 | None:intergenic | 30.0% | |
| !!! | GAATTTCCTTTTCTAGAACT+GGG | - | chr5_1:6574398-6574417 | None:intergenic | 30.0% |
| !!! | AGAATTTCCTTTTCTAGAAC+TGG | - | chr5_1:6574399-6574418 | None:intergenic | 30.0% |
| !! | AGTTCTAGAAAAGGAAATTC+TGG | + | chr5_1:6574398-6574417 | Msa0714000:CDS | 30.0% |
| ATTGATTGATCAGAGTAAGA+AGG | + | chr5_1:6574547-6574566 | Msa0714000:intron | 30.0% | |
| CAGAAAAATGAATGAAAGAG+AGG | + | chr5_1:6574577-6574596 | Msa0714000:CDS | 30.0% | |
| TTTGCAATTATACGATGCAA+TGG | + | chr5_1:6574604-6574623 | Msa0714000:CDS | 30.0% | |
| TAATATTGTTACCTGCACAA+AGG | - | chr5_1:6574863-6574882 | None:intergenic | 30.0% | |
| ! | CGAAATTAGATGGACAATTT+TGG | + | chr5_1:6574997-6575016 | Msa0714000:CDS | 30.0% |
| GAAAAGATCTTGAAAACAAG+AGG | + | chr5_1:6575022-6575041 | Msa0714000:CDS | 30.0% | |
| ATCTTGAAAACAAGAGGAAT+TGG | + | chr5_1:6575028-6575047 | Msa0714000:CDS | 30.0% | |
| TCTTGAAAACAAGAGGAATT+GGG | + | chr5_1:6575029-6575048 | Msa0714000:CDS | 30.0% | |
| ! | ATCTAATAGTTCTATATCCC+CGG | - | chr5_1:6575092-6575111 | None:intergenic | 30.0% |
| AGAAAAGAAGAGAGGAATTC+CGG | - | chr5_1:6570896-6570915 | None:intergenic | 35.0% | |
| GATTTCTTTCTCGTAATGCA+AGG | + | chr5_1:6571017-6571036 | Msa0714000:intron | 35.0% | |
| CTTGAATTGTGATCATGCAA+TGG | + | chr5_1:6571248-6571267 | Msa0714000:intron | 35.0% | |
| TGTATGTATGTTTGGATCAG+CGG | + | chr5_1:6571358-6571377 | Msa0714000:intron | 35.0% | |
| ATAGCTTCTGTCAATTACAG+TGG | + | chr5_1:6571445-6571464 | Msa0714000:intron | 35.0% | |
| ATTGCTAGTTGGACAAAGTT+AGG | - | chr5_1:6571713-6571732 | None:intergenic | 35.0% | |
| AGTTTACCTGTTAGACAACA+TGG | + | chr5_1:6571780-6571799 | Msa0714000:intron | 35.0% | |
| GAAAATGTGGCAAATCTACA+TGG | - | chr5_1:6572012-6572031 | None:intergenic | 35.0% | |
| ACGTTGTACGTTAGAAAATG+TGG | - | chr5_1:6572025-6572044 | None:intergenic | 35.0% | |
| ATTGTAACTTACGAGGAAAG+TGG | + | chr5_1:6572359-6572378 | Msa0714000:intron | 35.0% | |
| AACTGAATAGCTTATCGGAA+TGG | + | chr5_1:6572500-6572519 | Msa0714000:intron | 35.0% | |
| AATAGCTTATCGGAATGGAA+GGG | + | chr5_1:6572505-6572524 | Msa0714000:intron | 35.0% | |
| GAAGTAATGTACCAATAGCA+TGG | + | chr5_1:6572596-6572615 | Msa0714000:intron | 35.0% | |
| ATAAGCTGATGGCTAACATT+CGG | + | chr5_1:6572940-6572959 | Msa0714000:exon | 35.0% | |
| !! | TGCATTAATACTGATAACGG+TGG | + | chr5_1:6573140-6573159 | Msa0714000:CDS | 35.0% |
| ! | CATCCCACTTGATTTTGAAT+AGG | + | chr5_1:6573202-6573221 | Msa0714000:intron | 35.0% |
| GTGCCTATTCAAAATCAAGT+GGG | - | chr5_1:6573208-6573227 | None:intergenic | 35.0% | |
| ! | CACTTGATTTTGAATAGGCA+CGG | + | chr5_1:6573207-6573226 | Msa0714000:intron | 35.0% |
| !! | GAAATTTTGATGTACCTAGC+CGG | - | chr5_1:6573239-6573258 | None:intergenic | 35.0% |
| ATAAAGGGAACAAACATACC+AGG | - | chr5_1:6573699-6573718 | None:intergenic | 35.0% | |
| TGTTTGTCTCCTTGTACTAT+AGG | + | chr5_1:6573739-6573758 | Msa0714000:intron | 35.0% | |
| GTTTGTCTCCTTGTACTATA+GGG | + | chr5_1:6573740-6573759 | Msa0714000:intron | 35.0% | |
| TTTGTCTCCTTGTACTATAG+GGG | + | chr5_1:6573741-6573760 | Msa0714000:intron | 35.0% | |
| ! | GTAGGCTTGATAATATTCTC+TGG | + | chr5_1:6573763-6573782 | Msa0714000:intron | 35.0% |
| GGAATTTGTCCTACATTTGT+TGG | + | chr5_1:6574158-6574177 | Msa0714000:CDS | 35.0% | |
| ATGTGAACAGAAGCTAGAAT+TGG | + | chr5_1:6574221-6574240 | Msa0714000:CDS | 35.0% | |
| TGTGAACAGAAGCTAGAATT+GGG | + | chr5_1:6574222-6574241 | Msa0714000:CDS | 35.0% | |
| CTAGTTCACATTTGTAGAGA+TGG | + | chr5_1:6574632-6574651 | Msa0714000:CDS | 35.0% | |
| !! | CTTTGAAGTCTTTATCATGC+GGG | - | chr5_1:6574673-6574692 | None:intergenic | 35.0% |
| !! | GCTTTGAAGTCTTTATCATG+CGG | - | chr5_1:6574674-6574693 | None:intergenic | 35.0% |
| AAAGGAACTCTACAGAAATC+TGG | - | chr5_1:6574845-6574864 | None:intergenic | 35.0% | |
| GCAAGAAAGACGAAATTAGA+TGG | + | chr5_1:6574987-6575006 | Msa0714000:CDS | 35.0% | |
| ! | CCACAATGACAATCTTTTTC+CGG | + | chr5_1:6575070-6575089 | Msa0714000:exon | 35.0% |
| ! | CACAATGACAATCTTTTTCC+GGG | + | chr5_1:6575071-6575090 | Msa0714000:exon | 35.0% |
| ! | ACAATGACAATCTTTTTCCG+GGG | + | chr5_1:6575072-6575091 | Msa0714000:exon | 35.0% |
| CTGTCAGTGTAGTTGTTTGA+TGG | - | chr5_1:6570778-6570797 | None:intergenic | 40.0% | |
| AGAAGTAATTCACATACCCC+CGG | + | chr5_1:6570874-6570893 | Msa0714000:five_prime_UTR | 40.0% | |
| AAAAGAAGAGAGGAATTCCG+GGG | - | chr5_1:6570894-6570913 | None:intergenic | 40.0% | |
| GAAAAGAAGAGAGGAATTCC+GGG | - | chr5_1:6570895-6570914 | None:intergenic | 40.0% | |
| TCAAGGTCGAAATTGCTAGT+TGG | - | chr5_1:6571724-6571743 | None:intergenic | 40.0% | |
| GAATAGCTTATCGGAATGGA+AGG | + | chr5_1:6572504-6572523 | Msa0714000:intron | 40.0% | |
| ATAGCTTATCGGAATGGAAG+GGG | + | chr5_1:6572506-6572525 | Msa0714000:intron | 40.0% | |
| TTACGGTGACAAATCGCAAT+CGG | - | chr5_1:6572567-6572586 | None:intergenic | 40.0% | |
| TTGCGATTTGTCACCGTAAA+AGG | + | chr5_1:6572568-6572587 | Msa0714000:intron | 40.0% | |
| ! | ATTACTTCCACCGCCTTTTA+CGG | - | chr5_1:6572584-6572603 | None:intergenic | 40.0% |
| TTCTGCAACAAGAGATCTGT+GGG | + | chr5_1:6573082-6573101 | Msa0714000:CDS | 40.0% | |
| CGTGCCTATTCAAAATCAAG+TGG | - | chr5_1:6573209-6573228 | None:intergenic | 40.0% | |
| TATACTATATGATCAGGCGG+TGG | + | chr5_1:6573553-6573572 | Msa0714000:intron | 40.0% | |
| AGCAAGCAAATCGTTCCAAT+CGG | + | chr5_1:6573603-6573622 | Msa0714000:CDS | 40.0% | |
| AAAACTCGTACTGCATCATG+TGG | - | chr5_1:6573656-6573675 | None:intergenic | 40.0% | |
| TACATCCATTCATTGCCGAT+AGG | + | chr5_1:6573834-6573853 | Msa0714000:intron | 40.0% | |
| GTTATCCTATCGGCAATGAA+TGG | - | chr5_1:6573842-6573861 | None:intergenic | 40.0% | |
| ATTGATCTACTCGGTTTAGC+TGG | - | chr5_1:6573901-6573920 | None:intergenic | 40.0% | |
| GAGATCAACATAGCTGATCA+AGG | + | chr5_1:6573997-6574016 | Msa0714000:intron | 40.0% | |
| !! | GAGAAAGCACCAACAAATGT+AGG | - | chr5_1:6574170-6574189 | None:intergenic | 40.0% |
| AAAACTGTTTCGGAGTCAGA+AGG | + | chr5_1:6574348-6574367 | Msa0714000:CDS | 40.0% | |
| TTGATCAGAGTAAGAAGGAG+AGG | + | chr5_1:6574552-6574571 | Msa0714000:intron | 40.0% | |
| AGAGATGGTTGTCGAACTAT+TGG | + | chr5_1:6574647-6574666 | Msa0714000:CDS | 40.0% | |
| ! | TTGCAGGAAGTATACCTACA+CGG | - | chr5_1:6574704-6574723 | None:intergenic | 40.0% |
| TGTAGGTATACTTCCTGCAA+AGG | + | chr5_1:6574704-6574723 | Msa0714000:CDS | 40.0% | |
| GTAGGTATACTTCCTGCAAA+GGG | + | chr5_1:6574705-6574724 | Msa0714000:CDS | 40.0% | |
| !! | TTGCTTGTTCGTCATTTTGC+TGG | + | chr5_1:6574734-6574753 | Msa0714000:CDS | 40.0% |
| CCGGAAAAAGATTGTCATTG+TGG | - | chr5_1:6575073-6575092 | None:intergenic | 40.0% | |
| ATAGTAAGAAATGGCCCTCA+AGG | + | chr5_1:6575163-6575182 | Msa0714000:three_prime_UTR | 40.0% | |
| GAGCAACAATTCATCCTTGA+GGG | - | chr5_1:6575180-6575199 | None:intergenic | 40.0% | |
| AAAGAAGAGAGGAATTCCGG+GGG | - | chr5_1:6570893-6570912 | None:intergenic | 45.0% | |
| GTTTGGATTGACACCGAGTT+TGG | - | chr5_1:6571486-6571505 | None:intergenic | 45.0% | |
| ! | GCATTGTTGTTGGGTACACA+TGG | - | chr5_1:6571834-6571853 | None:intergenic | 45.0% |
| AGCATGCAGCAATTTCATCC+TGG | - | chr5_1:6571864-6571883 | None:intergenic | 45.0% | |
| CGATTTGTCACCGTAAAAGG+CGG | + | chr5_1:6572571-6572590 | Msa0714000:intron | 45.0% | |
| AGCAGTGAAGCATAAGCTGA+TGG | + | chr5_1:6572929-6572948 | Msa0714000:exon | 45.0% | |
| CTTCTGCAACAAGAGATCTG+TGG | + | chr5_1:6573081-6573100 | Msa0714000:CDS | 45.0% | |
| !!! | TGGGAGCGTCTTTTCAATGA+AGG | + | chr5_1:6573101-6573120 | Msa0714000:CDS | 45.0% |
| !!! | GGGAGCGTCTTTTCAATGAA+GGG | + | chr5_1:6573102-6573121 | Msa0714000:CDS | 45.0% |
| CTCTTAAGCAGTGACATCTG+TGG | - | chr5_1:6573379-6573398 | None:intergenic | 45.0% | |
| TTCAGCATGCCTCTCAATAC+AGG | - | chr5_1:6573584-6573603 | None:intergenic | 45.0% | |
| AAGCAAATCGTTCCAATCGG+TGG | + | chr5_1:6573606-6573625 | Msa0714000:CDS | 45.0% | |
| TGGCGATCGATCTCAATCTT+TGG | + | chr5_1:6573626-6573645 | Msa0714000:CDS | 45.0% | |
| GGCGATCGATCTCAATCTTT+GGG | + | chr5_1:6573627-6573646 | Msa0714000:CDS | 45.0% | |
| GCGATCGATCTCAATCTTTG+GGG | + | chr5_1:6573628-6573647 | Msa0714000:CDS | 45.0% | |
| TCTCCTTGTACTATAGGGGT+AGG | + | chr5_1:6573745-6573764 | Msa0714000:intron | 45.0% | |
| AAGCCTACCCCTATAGTACA+AGG | - | chr5_1:6573751-6573770 | None:intergenic | 45.0% | |
| !!! | ATTGAGTTTTGTTTGGGGGG+TGG | + | chr5_1:6573969-6573988 | Msa0714000:intron | 45.0% |
| !!! | TTGAGTTTTGTTTGGGGGGT+GGG | + | chr5_1:6573970-6573989 | Msa0714000:intron | 45.0% |
| CACATTCACGCTTCAAGTGA+GGG | - | chr5_1:6574206-6574225 | None:intergenic | 45.0% | |
| TCACATTCACGCTTCAAGTG+AGG | - | chr5_1:6574207-6574226 | None:intergenic | 45.0% | |
| AGAATTGGGTTTACTCACCG+TGG | + | chr5_1:6574236-6574255 | Msa0714000:CDS | 45.0% | |
| TGACAAATGAAACTGAGCCG+CGG | - | chr5_1:6574306-6574325 | None:intergenic | 45.0% | |
| !! | GAGTCACCCAGTTCTAGAAA+AGG | + | chr5_1:6574389-6574408 | Msa0714000:CDS | 45.0% |
| AAGCAATTCAAGCCCTTTGC+AGG | - | chr5_1:6574720-6574739 | None:intergenic | 45.0% | |
| TCTGTAGAGTTCCTTTGTGC+AGG | + | chr5_1:6574849-6574868 | Msa0714000:CDS | 45.0% | |
| TTGGGATTGCACCATGCTTT+CGG | + | chr5_1:6575047-6575066 | Msa0714000:CDS | 45.0% | |
| GGAGCAACAATTCATCCTTG+AGG | - | chr5_1:6575181-6575200 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTACTAAATTTA+AGG | + | chr5_1:6572280-6572299 | Msa0714000:intron | 5.0% |
| !! | AACAAAAAAATTAATAATTA+AGG | - | chr5_1:6574466-6574485 | None:intergenic | 5.0% |
| GTTTGGATCAGCGGTGAGTT+TGG | + | chr5_1:6571367-6571386 | Msa0714000:intron | 50.0% | |
| CGTCGTCCATGTTGTCTAAC+AGG | - | chr5_1:6571789-6571808 | None:intergenic | 50.0% | |
| ! | GGAGACGTGGCATTGTTGTT+GGG | - | chr5_1:6571843-6571862 | None:intergenic | 50.0% |
| TGGAGACGTGGCATTGTTGT+TGG | - | chr5_1:6571844-6571863 | None:intergenic | 50.0% | |
| AACAACAATGCCACGTCTCC+AGG | + | chr5_1:6571843-6571862 | Msa0714000:intron | 50.0% | |
| GCAATTTCATCCTGGAGACG+TGG | - | chr5_1:6571856-6571875 | None:intergenic | 50.0% | |
| TCTGGAGATGTGCAGTCATG+TGG | + | chr5_1:6571983-6572002 | Msa0714000:intron | 50.0% | |
| AATCGCAATCGGAGAACCTG+TGG | - | chr5_1:6572556-6572575 | None:intergenic | 50.0% | |
| TTTGTCACCGTAAAAGGCGG+TGG | + | chr5_1:6572574-6572593 | Msa0714000:intron | 50.0% | |
| CGCATACTCGCAAGGATAAC+CGG | - | chr5_1:6573018-6573037 | None:intergenic | 50.0% | |
| CGGTTATCCTTGCGAGTATG+CGG | + | chr5_1:6573016-6573035 | Msa0714000:CDS | 50.0% | |
| GTGGCTTCTCCTGTATTGAG+AGG | + | chr5_1:6573572-6573591 | Msa0714000:CDS | 50.0% | |
| TCTACTCGGTTTAGCTGGTG+AGG | - | chr5_1:6573896-6573915 | None:intergenic | 50.0% | |
| !!! | TGAGTTTTGTTTGGGGGGTG+GGG | + | chr5_1:6573971-6573990 | Msa0714000:intron | 50.0% |
| CATTACTGTGTGATGCTCCG+CGG | + | chr5_1:6574286-6574305 | Msa0714000:CDS | 50.0% | |
| CTGTTTCGGAGTCAGAAGGA+TGG | + | chr5_1:6574352-6574371 | Msa0714000:CDS | 50.0% | |
| TCAAAGCAAACCAGCCGTGT+AGG | + | chr5_1:6574687-6574706 | Msa0714000:CDS | 50.0% | |
| ! | AGGAAGTATACCTACACGGC+TGG | - | chr5_1:6574700-6574719 | None:intergenic | 50.0% |
| ! | GTTGCAAGTTGAGAGTCCCT+GGG | + | chr5_1:6574756-6574775 | Msa0714000:CDS | 50.0% |
| ! | TTGCAAGTTGAGAGTCCCTG+GGG | + | chr5_1:6574757-6574776 | Msa0714000:CDS | 50.0% |
| GTGCTCATTGCAAGAGGATG+TGG | + | chr5_1:6574783-6574802 | Msa0714000:CDS | 50.0% | |
| CAAGAGGATGTGGCAACTGT+TGG | + | chr5_1:6574793-6574812 | Msa0714000:CDS | 50.0% | |
| TGTCATTGTGGCCGAAAGCA+TGG | - | chr5_1:6575061-6575080 | None:intergenic | 50.0% | |
| ACCTGTGGAGCACACAAGGT+GGG | - | chr5_1:6572541-6572560 | None:intergenic | 55.0% | |
| AACCTGTGGAGCACACAAGG+TGG | - | chr5_1:6572542-6572561 | None:intergenic | 55.0% | |
| GAGAACCTGTGGAGCACACA+AGG | - | chr5_1:6572545-6572564 | None:intergenic | 55.0% | |
| TAACCGGTTGCTGCTGATCG+AGG | - | chr5_1:6573002-6573021 | None:intergenic | 55.0% | |
| TTCATCGCCGCATACTCGCA+AGG | - | chr5_1:6573026-6573045 | None:intergenic | 55.0% | |
| TGAATAGGCACGGATGCTGC+CGG | + | chr5_1:6573217-6573236 | Msa0714000:intron | 55.0% | |
| TGAGATCGATCGCCACCGAT+TGG | - | chr5_1:6573621-6573640 | None:intergenic | 55.0% | |
| !!! | GAGTTTTGTTTGGGGGGTGG+GGG | + | chr5_1:6573972-6573991 | Msa0714000:intron | 55.0% |
| ! | GGTTGCAAGTTGAGAGTCCC+TGG | + | chr5_1:6574755-6574774 | Msa0714000:CDS | 55.0% |
| ! | TGCAAGTTGAGAGTCCCTGG+GGG | + | chr5_1:6574758-6574777 | Msa0714000:CDS | 55.0% |
| TGCAATGAGCACAACCCCCA+GGG | - | chr5_1:6574775-6574794 | None:intergenic | 55.0% | |
| TTGCAATGAGCACAACCCCC+AGG | - | chr5_1:6574776-6574795 | None:intergenic | 55.0% | |
| GGGGTTGTGCTCATTGCAAG+AGG | + | chr5_1:6574777-6574796 | Msa0714000:CDS | 55.0% | |
| GTGAGTTTGGCGTGTGCGTC+TGG | + | chr5_1:6571380-6571399 | Msa0714000:intron | 60.0% | |
| ACCCACCTTGTGTGCTCCAC+AGG | + | chr5_1:6572537-6572556 | Msa0714000:intron | 60.0% | |
| CGAGGCGAAGGAGGTGGTAT+CGG | - | chr5_1:6572984-6573003 | None:intergenic | 60.0% | |
| GTTGCTGCTGATCGAGGCGA+AGG | - | chr5_1:6572996-6573015 | None:intergenic | 60.0% | |
| TCGCCTCGATCAGCAGCAAC+CGG | + | chr5_1:6572996-6573015 | Msa0714000:CDS | 60.0% | |
| ACACAGCTGCTTCGCCCTCT+CGG | - | chr5_1:6573059-6573078 | None:intergenic | 60.0% | |
| !! | TTTTGTTTGGGGGGTGGGGG+AGG | + | chr5_1:6573975-6573994 | Msa0714000:intron | 60.0% |
| GCTGATCGAGGCGAAGGAGG+TGG | - | chr5_1:6572990-6573009 | None:intergenic | 65.0% | |
| GCTGCTGATCGAGGCGAAGG+AGG | - | chr5_1:6572993-6573012 | None:intergenic | 65.0% | |
| ! | AGGCACGGATGCTGCCGGCT+AGG | + | chr5_1:6573222-6573241 | Msa0714000:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 6570767 | 6575390 | 6570767 | ID=Msa0714000;Name=Msa0714000 |
| chr5_1 | mRNA | 6570767 | 6575390 | 6570767 | ID=Msa0714000-mRNA-1;Parent=Msa0714000;Name=Msa0714000-mRNA-1;_AED=0.14;_eAED=0.14;_QI=231|1|1|1|0.8|1|6|312|370 |
| chr5_1 | exon | 6570767 | 6570978 | 6570767 | ID=Msa0714000-mRNA-1:exon:2721;Parent=Msa0714000-mRNA-1 |
| chr5_1 | exon | 6572929 | 6573190 | 6572929 | ID=Msa0714000-mRNA-1:exon:2722;Parent=Msa0714000-mRNA-1 |
| chr5_1 | exon | 6573569 | 6573699 | 6573569 | ID=Msa0714000-mRNA-1:exon:2723;Parent=Msa0714000-mRNA-1 |
| chr5_1 | exon | 6574137 | 6574443 | 6574137 | ID=Msa0714000-mRNA-1:exon:2724;Parent=Msa0714000-mRNA-1 |
| chr5_1 | exon | 6574560 | 6574870 | 6574560 | ID=Msa0714000-mRNA-1:exon:2725;Parent=Msa0714000-mRNA-1 |
| chr5_1 | exon | 6574958 | 6575390 | 6574958 | ID=Msa0714000-mRNA-1:exon:2726;Parent=Msa0714000-mRNA-1 |
| chr5_1 | five_prime_UTR | 6570767 | 6570978 | 6570767 | ID=Msa0714000-mRNA-1:five_prime_utr;Parent=Msa0714000-mRNA-1 |
| chr5_1 | five_prime_UTR | 6572929 | 6572947 | 6572929 | ID=Msa0714000-mRNA-1:five_prime_utr;Parent=Msa0714000-mRNA-1 |
| chr5_1 | CDS | 6572948 | 6573190 | 6572948 | ID=Msa0714000-mRNA-1:cds;Parent=Msa0714000-mRNA-1 |
| chr5_1 | CDS | 6573569 | 6573699 | 6573569 | ID=Msa0714000-mRNA-1:cds;Parent=Msa0714000-mRNA-1 |
| chr5_1 | CDS | 6574137 | 6574443 | 6574137 | ID=Msa0714000-mRNA-1:cds;Parent=Msa0714000-mRNA-1 |
| chr5_1 | CDS | 6574560 | 6574870 | 6574560 | ID=Msa0714000-mRNA-1:cds;Parent=Msa0714000-mRNA-1 |
| chr5_1 | CDS | 6574958 | 6575078 | 6574958 | ID=Msa0714000-mRNA-1:cds;Parent=Msa0714000-mRNA-1 |
| chr5_1 | three_prime_UTR | 6575079 | 6575390 | 6575079 | ID=Msa0714000-mRNA-1:three_prime_utr;Parent=Msa0714000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
