Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835330 | AES94554.2 | 97.283 | 368 | 10 | 0 | 3 | 370 | 47 | 414 | 0.0 | 752 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835330 | sp|Q9FJX5|BT4_ARATH | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 2.66e-176 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835330 | G7K3T4 | 97.283 | 368 | 10 | 0 | 3 | 370 | 47 | 414 | 0.0 | 752 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0835330 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714000 | Msa0835330 | 0.921507 | 3.274775e-88 | -8.615850e-47 |
| Msa0835330 | Msa1399990 | 0.928652 | 2.133170e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835330 | MtrunA17_Chr5g0401281 | 97.283 | 368 | 10 | 0 | 3 | 370 | 8 | 375 | 0.0 | 749 |
| Msa0835330 | MtrunA17_Chr4g0058071 | 44.781 | 297 | 159 | 5 | 63 | 355 | 17 | 312 | 1.19e-82 | 256 |
| Msa0835330 | MtrunA17_Chr3g0116501 | 38.725 | 204 | 124 | 1 | 131 | 334 | 1 | 203 | 3.56e-50 | 167 |
| Msa0835330 | MtrunA17_Chr4g0000031 | 34.426 | 122 | 66 | 4 | 243 | 364 | 1598 | 1705 | 4.89e-15 | 77.0 |
| Msa0835330 | MtrunA17_Chr3g0125321 | 29.412 | 153 | 101 | 3 | 76 | 226 | 97 | 244 | 6.17e-13 | 68.2 |
| Msa0835330 | MtrunA17_Chr5g0438991 | 38.356 | 73 | 44 | 1 | 273 | 345 | 886 | 957 | 1.47e-12 | 69.3 |
| Msa0835330 | MtrunA17_Chr3g0138411 | 39.506 | 81 | 47 | 2 | 274 | 353 | 1119 | 1198 | 4.79e-12 | 67.8 |
| Msa0835330 | MtrunA17_Chr6g0456861 | 38.889 | 72 | 43 | 1 | 274 | 345 | 692 | 762 | 7.36e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835330 | AT5G67480.1 | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 2.71e-177 | 497 |
| Msa0835330 | AT5G67480.3 | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 2.71e-177 | 497 |
| Msa0835330 | AT5G67480.2 | 65.000 | 360 | 114 | 2 | 11 | 369 | 31 | 379 | 4.01e-177 | 497 |
| Msa0835330 | AT4G37610.1 | 60.976 | 328 | 126 | 2 | 41 | 367 | 34 | 360 | 1.90e-149 | 427 |
| Msa0835330 | AT1G05690.1 | 49.861 | 361 | 167 | 4 | 4 | 360 | 1 | 351 | 3.07e-110 | 327 |
| Msa0835330 | AT3G48360.1 | 43.789 | 322 | 163 | 8 | 56 | 361 | 28 | 347 | 3.47e-79 | 247 |
| Msa0835330 | AT5G63160.1 | 43.770 | 313 | 163 | 7 | 61 | 361 | 24 | 335 | 1.58e-75 | 238 |
| Msa0835330 | AT3G48360.2 | 45.862 | 290 | 142 | 6 | 56 | 331 | 28 | 316 | 2.49e-73 | 231 |
| Msa0835330 | AT5G63160.2 | 46.099 | 282 | 140 | 6 | 61 | 331 | 24 | 304 | 4.93e-71 | 224 |
| Msa0835330 | AT5G63160.3 | 45.020 | 251 | 127 | 7 | 120 | 361 | 2 | 250 | 1.54e-59 | 194 |
| Msa0835330 | AT3G48360.3 | 44.033 | 243 | 122 | 7 | 131 | 361 | 1 | 241 | 2.12e-58 | 190 |
| Msa0835330 | AT1G79000.1 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 7.51e-15 | 77.0 |
| Msa0835330 | AT1G79000.3 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1546 | 1669 | 7.84e-15 | 76.6 |
| Msa0835330 | AT1G79000.2 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 7.89e-15 | 76.6 |
| Msa0835330 | AT1G16710.2 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1550 | 1673 | 9.80e-13 | 70.5 |
| Msa0835330 | AT1G16710.3 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 1.06e-12 | 70.1 |
| Msa0835330 | AT1G16710.10 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 1.06e-12 | 70.1 |
| Msa0835330 | AT1G16710.8 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 1.06e-12 | 70.1 |
| Msa0835330 | AT1G16710.7 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 1.06e-12 | 70.1 |
| Msa0835330 | AT1G16710.6 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.07e-12 | 70.1 |
| Msa0835330 | AT1G16710.4 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.07e-12 | 70.1 |
| Msa0835330 | AT1G16710.5 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.07e-12 | 70.1 |
| Msa0835330 | AT1G16710.1 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1579 | 1702 | 1.09e-12 | 70.1 |
| Msa0835330 | AT3G12980.1 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1581 | 1661 | 5.01e-11 | 65.1 |
| Msa0835330 | AT3G12980.2 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1500 | 1580 | 5.29e-11 | 65.1 |
Find 97 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATTAGATGGACAATTT+TGG | 0.186306 | 5_4:+8634127 | Msa0835330:CDS |
| AATATATTGAAGATTGATTT+TGG | 0.190174 | 5_4:+8634437 | Msa0835330:three_prime_UTR |
| GGCGATCGATCTCAATCTTT+GGG | 0.258443 | 5_4:+8632757 | Msa0835330:CDS |
| TGGCGATCGATCTCAATCTT+TGG | 0.276993 | 5_4:+8632756 | Msa0835330:CDS |
| TTCGATATTTGTACTCTTCC+TGG | 0.283350 | 5_4:+8632808 | Msa0835330:CDS |
| TTTCTTTCAAGGTTAGATTA+AGG | 0.291505 | 5_4:+8630160 | Msa0835330:five_prime_UTR |
| TATTCCTTGAATTGAAAGTT+TGG | 0.294590 | 5_4:-8630137 | None:intergenic |
| CAATCTTCAATATATTGATT+TGG | 0.319165 | 5_4:-8634430 | None:intergenic |
| ATCTTGAAAACAAGAGGAAT+TGG | 0.329795 | 5_4:+8634158 | Msa0835330:CDS |
| AGAAAAGAAGAGAGGAATTC+CGG | 0.333093 | 5_4:-8630096 | None:intergenic |
| AAGCAATTCAAGCCCTTTGC+AGG | 0.347578 | 5_4:-8633847 | None:intergenic |
| CTGTCAGTGTAGTTGTTTGA+TGG | 0.354563 | 5_4:-8629978 | None:intergenic |
| AGTTCCAAACTTTCAATTCA+AGG | 0.358112 | 5_4:+8630133 | Msa0835330:five_prime_UTR |
| TTGGGATTGCACCATGCTTT+CGG | 0.361459 | 5_4:+8634177 | Msa0835330:CDS |
| AAAGAACTTCAAAACTGTTT+CGG | 0.374386 | 5_4:+8633468 | Msa0835330:CDS |
| AGTTCTAGAAAAGGAAATTC+TGG | 0.390373 | 5_4:+8633528 | Msa0835330:CDS |
| TTCAAGGAATATTTCTTTCA+AGG | 0.392170 | 5_4:+8630149 | Msa0835330:five_prime_UTR |
| CGCATACTCGCAAGGATAAC+CGG | 0.402463 | 5_4:-8632145 | None:intergenic |
| GCAAGAAAGACGAAATTAGA+TGG | 0.406485 | 5_4:+8634117 | Msa0835330:CDS |
| AAAGGAACTCTACAGAAATC+TGG | 0.408140 | 5_4:-8633972 | None:intergenic |
| TGTATTATTATAGTAAGAAA+TGG | 0.409631 | 5_4:+8634284 | Msa0835330:three_prime_UTR |
| ATGTGAACAGAAGCTAGAAT+TGG | 0.410891 | 5_4:+8633351 | Msa0835330:CDS |
| AGAGATGGTTGTCGAACTAT+TGG | 0.415706 | 5_4:+8633777 | Msa0835330:CDS |
| GGTTGCAAGTTGAGAGTCCC+TGG | 0.418562 | 5_4:+8633885 | Msa0835330:CDS |
| CTAGTTCACATTTGTAGAGA+TGG | 0.440223 | 5_4:+8633762 | Msa0835330:CDS |
| CGAGGCGAAGGAGGTGGTAT+CGG | 0.446905 | 5_4:-8632111 | None:intergenic |
| TCTGTAGAGTTCCTTTGTGC+AGG | 0.450851 | 5_4:+8633979 | Msa0835330:CDS |
| TCTTGAAAACAAGAGGAATT+GGG | 0.451569 | 5_4:+8634159 | Msa0835330:CDS |
| TTCAGCATGCCTCTCAATAC+AGG | 0.459183 | 5_4:-8632711 | None:intergenic |
| TGAGATCGATCGCCACCGAT+TGG | 0.468351 | 5_4:-8632748 | None:intergenic |
| GAAAAGAAGAGAGGAATTCC+GGG | 0.470148 | 5_4:-8630095 | None:intergenic |
| GGAATTTGTCCTACATTTGT+TGG | 0.476702 | 5_4:+8633288 | Msa0835330:CDS |
| GAGTCACCCAGTTCTAGAAA+AGG | 0.485308 | 5_4:+8633519 | Msa0835330:CDS |
| AGAACAAAATAAACAAATGT+TGG | 0.495391 | 5_4:-8634376 | None:intergenic |
| GTTTGCATTAATACTGATAA+CGG | 0.495992 | 5_4:+8632267 | Msa0835330:CDS |
| TGTGAACAGAAGCTAGAATT+GGG | 0.501782 | 5_4:+8633352 | Msa0835330:CDS |
| ACACAGCTGCTTCGCCCTCT+CGG | 0.509722 | 5_4:-8632186 | None:intergenic |
| GAGCAACAATTCATCCTTGA+GGG | 0.511620 | 5_4:-8634307 | None:intergenic |
| TTACGAGAAAGAAGAAATGA+AGG | 0.513436 | 5_4:+8633267 | Msa0835330:CDS |
| TTCTGCAACAAGAGATCTGT+GGG | 0.515476 | 5_4:+8632212 | Msa0835330:CDS |
| TCGCCTCGATCAGCAGCAAC+CGG | 0.515743 | 5_4:+8632126 | Msa0835330:CDS |
| ATCTAATAGTTCTATATCCC+CGG | 0.516716 | 5_4:-8634219 | None:intergenic |
| GTTGCAAGTTGAGAGTCCCT+GGG | 0.520761 | 5_4:+8633886 | Msa0835330:CDS |
| TCTGTTTGAAGAGATTTCTA+CGG | 0.524665 | 5_4:-8630048 | None:intergenic |
| CACATTCACGCTTCAAGTGA+GGG | 0.529306 | 5_4:-8633333 | None:intergenic |
| GTGCTCATTGCAAGAGGATG+TGG | 0.529329 | 5_4:+8633913 | Msa0835330:CDS |
| ATAAGCTGATGGCTAACATT+CGG | 0.529455 | 5_4:+8632070 | Msa0835330:exon |
| TATAGTTCATTTAAAAGTAA+CGG | 0.531246 | 5_4:-8634404 | None:intergenic |
| CAAGAGGATGTGGCAACTGT+TGG | 0.537744 | 5_4:+8633923 | Msa0835330:CDS |
| CTTTGAAGTCTTTATCATGC+GGG | 0.542449 | 5_4:-8633800 | None:intergenic |
| AAAACTGTTTCGGAGTCAGA+AGG | 0.543714 | 5_4:+8633478 | Msa0835330:CDS |
| GAGAAAGCACCAACAAATGT+AGG | 0.546221 | 5_4:-8633297 | None:intergenic |
| ATAGTAAGAAATGGCCCTCA+AGG | 0.546989 | 5_4:+8634293 | Msa0835330:three_prime_UTR |
| AGCAAGCAAATCGTTCCAAT+CGG | 0.549306 | 5_4:+8632733 | Msa0835330:CDS |
| GTTGCTGCTGATCGAGGCGA+AGG | 0.550246 | 5_4:-8632123 | None:intergenic |
| GTAGGTATACTTCCTGCAAA+GGG | 0.554458 | 5_4:+8633835 | Msa0835330:CDS |
| GCTGATCGAGGCGAAGGAGG+TGG | 0.554736 | 5_4:-8632117 | None:intergenic |
| AAGAAATGAGAAAAGAAGAG+AGG | 0.555753 | 5_4:-8630104 | None:intergenic |
| TTTGCAATTATACCATGCAA+TGG | 0.556140 | 5_4:+8633734 | Msa0835330:CDS |
| ATCAGTATTAATGCAAACAT+CGG | 0.559796 | 5_4:-8632262 | None:intergenic |
| AGGAAGTATACCTACACGGC+TGG | 0.561333 | 5_4:-8633827 | None:intergenic |
| GAAAAGATCTTGAAAACAAG+AGG | 0.566400 | 5_4:+8634152 | Msa0835330:CDS |
| GCTTTGAAGTCTTTATCATG+CGG | 0.567781 | 5_4:-8633801 | None:intergenic |
| TTCATCGCCGCATACTCGCA+AGG | 0.575928 | 5_4:-8632153 | None:intergenic |
| ATGAATAATTTATCACCGAG+AGG | 0.575964 | 5_4:+8632171 | Msa0835330:CDS |
| TTGATCAGAGTAAGAAAGAG+AGG | 0.587102 | 5_4:+8633682 | Msa0835330:intron |
| GCTGCTGATCGAGGCGAAGG+AGG | 0.588376 | 5_4:-8632120 | None:intergenic |
| TGTAGGTATACTTCCTGCAA+AGG | 0.593266 | 5_4:+8633834 | Msa0835330:CDS |
| TCACATTCACGCTTCAAGTG+AGG | 0.596344 | 5_4:-8633334 | None:intergenic |
| CGGTTATCCTTGCGAGTATG+CGG | 0.602040 | 5_4:+8632146 | Msa0835330:CDS |
| CTGTTTCGGAGTCAGAAGGA+TGG | 0.605228 | 5_4:+8633482 | Msa0835330:CDS |
| AAGCAAATCGTTCCAATCGG+TGG | 0.607764 | 5_4:+8632736 | Msa0835330:CDS |
| AGAAGTAATTCACATACCCC+CGG | 0.610334 | 5_4:+8630077 | Msa0835330:five_prime_UTR |
| TCAAAGCAAACCAGCCGTGT+AGG | 0.611970 | 5_4:+8633817 | Msa0835330:CDS |
| TGTCATTGTGGCCGAAAGCA+TGG | 0.612906 | 5_4:-8634188 | None:intergenic |
| TAACCGGTTGCTGCTGATCG+AGG | 0.614451 | 5_4:-8632129 | None:intergenic |
| GAACTAGAGCTTCCATTGCA+TGG | 0.614600 | 5_4:-8633746 | None:intergenic |
| TAGTAAACAATATATAGCAT+AGG | 0.615836 | 5_4:+8634342 | Msa0835330:three_prime_UTR |
| AGCAGTGAAGCATAAGCTGA+TGG | 0.620226 | 5_4:+8632059 | Msa0835330:exon |
| GGGGTTGTGCTCATTGCAAG+AGG | 0.622565 | 5_4:+8633907 | Msa0835330:CDS |
| AAAACTCGTACTGCATCATG+TGG | 0.623793 | 5_4:-8632783 | None:intergenic |
| GTGGCTTCTCCTGTATTGAG+AGG | 0.626268 | 5_4:+8632702 | Msa0835330:CDS |
| GCGATCGATCTCAATCTTTG+GGG | 0.627705 | 5_4:+8632758 | Msa0835330:CDS |
| TTGTTTACTATAAAGTAGAG+AGG | 0.630934 | 5_4:-8634329 | None:intergenic |
| GGAGCAACAATTCATCCTTG+AGG | 0.635350 | 5_4:-8634308 | None:intergenic |
| CTTCTGCAACAAGAGATCTG+TGG | 0.636785 | 5_4:+8632211 | Msa0835330:CDS |
| TGAATAATTTATCACCGAGA+GGG | 0.647099 | 5_4:+8632172 | Msa0835330:CDS |
| TGCATTAATACTGATAACGG+TGG | 0.661014 | 5_4:+8632270 | Msa0835330:CDS |
| TTGCAAGTTGAGAGTCCCTG+GGG | 0.661286 | 5_4:+8633887 | Msa0835330:CDS |
| AGAATTGGGTTTACTCACTG+TGG | 0.662164 | 5_4:+8633366 | Msa0835330:CDS |
| TAATATTGTTACCTGCACAA+AGG | 0.667930 | 5_4:-8633990 | None:intergenic |
| AAAAGAAGAGAGGAATTCCG+GGG | 0.681139 | 5_4:-8630094 | None:intergenic |
| TTGCAGGAAGTATACCTACA+CGG | 0.699708 | 5_4:-8633831 | None:intergenic |
| TGCAAGTTGAGAGTCCCTGG+GGG | 0.717689 | 5_4:+8633888 | Msa0835330:CDS |
| CATTACTGTGTGATGCTCCG+CGG | 0.722450 | 5_4:+8633416 | Msa0835330:CDS |
| AAAGAAGAGAGGAATTCCGG+GGG | 0.742234 | 5_4:-8630093 | None:intergenic |
| TGACAAATGAGACTGAGCCG+CGG | 0.747022 | 5_4:-8633433 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAATTTCTAATGTT+TGG | - | chr5_4:8631288-8631307 | None:intergenic | 10.0% |
| !! | AAACATTAGAAATTAAAATA+AGG | + | chr5_4:8631287-8631306 | Msa0835330:intron | 10.0% |
| !!! | TTTTTTTTCTTTCTTTTTTT+AGG | - | chr5_4:8631833-8631852 | None:intergenic | 10.0% |
| !! | CAATAACATATTAATATATA+AGG | + | chr5_4:8631891-8631910 | Msa0835330:intron | 10.0% |
| !! | AATAGTTATATAAATAGATA+AGG | - | chr5_4:8632004-8632023 | None:intergenic | 10.0% |
| !! | TAAAATACTTAAGTTTGATA+CGG | - | chr5_4:8631459-8631478 | None:intergenic | 15.0% |
| !!! | AAACTTAAGTATTTTATTCA+AGG | + | chr5_4:8631463-8631482 | Msa0835330:intron | 15.0% |
| !! | TAACTTAATCACATAATAAA+AGG | + | chr5_4:8631659-8631678 | Msa0835330:intron | 15.0% |
| !! | TATCATAATCATACAATAAA+AGG | + | chr5_4:8631952-8631971 | Msa0835330:intron | 15.0% |
| !!! | TATGCAATTAATCTATTTTA+AGG | + | chr5_4:8632483-8632502 | Msa0835330:intron | 15.0% |
| !!! | AAACTTTAAGAAATTTCAAT+CGG | + | chr5_4:8632988-8633007 | Msa0835330:intron | 15.0% |
| !!! | AAAAAAAATTGAGTTTTGTT+TGG | + | chr5_4:8633092-8633111 | Msa0835330:intron | 15.0% |
| !!! | AAAAAAATTGAGTTTTGTTT+GGG | + | chr5_4:8633093-8633112 | Msa0835330:intron | 15.0% |
| !! | TTACACAATAATAGATAATT+AGG | + | chr5_4:8633629-8633648 | Msa0835330:intron | 15.0% |
| !! | TGTATTATTATAGTAAGAAA+TGG | + | chr5_4:8634284-8634303 | Msa0835330:three_prime_UTR | 15.0% |
| !! | TATAGTTCATTTAAAAGTAA+CGG | - | chr5_4:8634407-8634426 | None:intergenic | 15.0% |
| !!! | TTACTTTTAAATGAACTATA+TGG | + | chr5_4:8634407-8634426 | Msa0835330:three_prime_UTR | 15.0% |
| !!! | AATATATTGAAGATTGATTT+TGG | + | chr5_4:8634437-8634456 | Msa0835330:three_prime_UTR | 15.0% |
| !! | GAAAGAAATCTTAATTGAAA+TGG | - | chr5_4:8630210-8630229 | None:intergenic | 20.0% |
| !! | AATTCAACTAATAGTGTTTA+GGG | - | chr5_4:8630895-8630914 | None:intergenic | 20.0% |
| !! | AACAAAACAATTGTCAATTT+AGG | + | chr5_4:8631169-8631188 | Msa0835330:intron | 20.0% |
| !! | ATCTAACAATAAAACATAAG+AGG | + | chr5_4:8631260-8631279 | Msa0835330:intron | 20.0% |
| !!! | TTGCTTTTTTATTTGAATGT+GGG | - | chr5_4:8631315-8631334 | None:intergenic | 20.0% |
| !!! | TTTGCTTTTTTATTTGAATG+TGG | - | chr5_4:8631316-8631335 | None:intergenic | 20.0% |
| !!! | TTCATTTTATAGAAGAATGT+GGG | - | chr5_4:8631348-8631367 | None:intergenic | 20.0% |
| !!! | TTATTTCTACATGATATGAA+TGG | - | chr5_4:8631541-8631560 | None:intergenic | 20.0% |
| !!! | AGCTTATCTTTAATTCTTTT+TGG | + | chr5_4:8631620-8631639 | Msa0835330:intron | 20.0% |
| !! | GTTAAATGTCATATAATATG+TGG | - | chr5_4:8631692-8631711 | None:intergenic | 20.0% |
| !!! | ATGATTTTGAGGTTTATAAA+GGG | - | chr5_4:8632844-8632863 | None:intergenic | 20.0% |
| !!! | TATGATTTTGAGGTTTATAA+AGG | - | chr5_4:8632845-8632864 | None:intergenic | 20.0% |
| !!! | ATTTCTTAAAGTTTTCCTAT+CGG | - | chr5_4:8632982-8633001 | None:intergenic | 20.0% |
| !!! | AAAAAATTGAGTTTTGTTTG+GGG | + | chr5_4:8633094-8633113 | Msa0835330:intron | 20.0% |
| !!! | TGAAGTTCTTTAGTATTTTA+CGG | - | chr5_4:8633459-8633478 | None:intergenic | 20.0% |
| !! | TAGTAAACAATATATAGCAT+AGG | + | chr5_4:8634342-8634361 | Msa0835330:three_prime_UTR | 20.0% |
| !! | AGAACAAAATAAACAAATGT+TGG | - | chr5_4:8634379-8634398 | None:intergenic | 20.0% |
| !!! | CAATCTTCAATATATTGATT+TGG | - | chr5_4:8634433-8634452 | None:intergenic | 20.0% |
| ! | TATTCCTTGAATTGAAAGTT+TGG | - | chr5_4:8630140-8630159 | None:intergenic | 25.0% |
| ! | TTCAAGGAATATTTCTTTCA+AGG | + | chr5_4:8630149-8630168 | Msa0835330:five_prime_UTR | 25.0% |
| ! | TTTCTTTCAAGGTTAGATTA+AGG | + | chr5_4:8630160-8630179 | Msa0835330:five_prime_UTR | 25.0% |
| !! | AGATTAATTCGTTGATTATC+TGG | + | chr5_4:8630331-8630350 | Msa0835330:intron | 25.0% |
| !! | GTTTTTGTAGATTCTTGATT+TGG | + | chr5_4:8630359-8630378 | Msa0835330:intron | 25.0% |
| !! | TATATCATTGATTGCATGTT+TGG | - | chr5_4:8630712-8630731 | None:intergenic | 25.0% |
| ! | ATACGAAACAGAAACTATTT+GGG | - | chr5_4:8630818-8630837 | None:intergenic | 25.0% |
| ! | TATACGAAACAGAAACTATT+TGG | - | chr5_4:8630819-8630838 | None:intergenic | 25.0% |
| !! | GTTTGAGACTTTAAGTAAAT+AGG | + | chr5_4:8630860-8630879 | Msa0835330:intron | 25.0% |
| ! | GAATTCAACTAATAGTGTTT+AGG | - | chr5_4:8630896-8630915 | None:intergenic | 25.0% |
| ! | ATTGACATGTTACAATTTCA+AGG | - | chr5_4:8630950-8630969 | None:intergenic | 25.0% |
| !! | CTTCATTTTATAGAAGAATG+TGG | - | chr5_4:8631349-8631368 | None:intergenic | 25.0% |
| !!! | TGAAGACTCAATTTTGTTAT+CGG | + | chr5_4:8631364-8631383 | Msa0835330:intron | 25.0% |
| !! | ATTTTTACTCTTTCTCTCTT+TGG | - | chr5_4:8631407-8631426 | None:intergenic | 25.0% |
| !!! | AGGTATGTATTTTGATAAAG+AGG | + | chr5_4:8631509-8631528 | Msa0835330:intron | 25.0% |
| ! | ATTTACAATTGTAACTTACG+AGG | + | chr5_4:8631561-8631580 | Msa0835330:intron | 25.0% |
| ! | AGATAAGCTATATTACAAGT+AGG | - | chr5_4:8631609-8631628 | None:intergenic | 25.0% |
| ! | CATTTAACTGAATAGCTTAT+CGG | + | chr5_4:8631704-8631723 | Msa0835330:intron | 25.0% |
| ! | TTATCCAAATCTATGTGTAA+TGG | + | chr5_4:8631927-8631946 | Msa0835330:intron | 25.0% |
| ! | ATCAGTATTAATGCAAACAT+CGG | - | chr5_4:8632265-8632284 | None:intergenic | 25.0% |
| ! | GTTTGCATTAATACTGATAA+CGG | + | chr5_4:8632267-8632286 | Msa0835330:CDS | 25.0% |
| ! | TCACTTTATACTATATGATC+AGG | + | chr5_4:8632677-8632696 | Msa0835330:intron | 25.0% |
| !! | CAAACATTCTTATGATTTTG+AGG | - | chr5_4:8632855-8632874 | None:intergenic | 25.0% |
| ! | AACTGTGAAATTGAAACAAA+TGG | + | chr5_4:8633064-8633083 | Msa0835330:intron | 25.0% |
| !!! | AAAAATTGAGTTTTGTTTGG+GGG | + | chr5_4:8633095-8633114 | Msa0835330:intron | 25.0% |
| ! | AAAGAACTTCAAAACTGTTT+CGG | + | chr5_4:8633468-8633487 | Msa0835330:CDS | 25.0% |
| ! | TGATTGAAGAAGAAAATGTA+AGG | + | chr5_4:8633557-8633576 | Msa0835330:intron | 25.0% |
| ! | ATTCAAAAGTAGTTAGACAA+TGG | - | chr5_4:8633655-8633674 | None:intergenic | 25.0% |
| ! | TGATTGTATTTATTTCAGCT+CGG | + | chr5_4:8634028-8634047 | Msa0835330:intron | 25.0% |
| !! | GTAACAAATCTTTTCATTTC+AGG | + | chr5_4:8634066-8634085 | Msa0835330:intron | 25.0% |
| ! | TTGTTTACTATAAAGTAGAG+AGG | - | chr5_4:8634332-8634351 | None:intergenic | 25.0% |
| TCTGTTTGAAGAGATTTCTA+CGG | - | chr5_4:8630051-8630070 | None:intergenic | 30.0% | |
| AAGAAATGAGAAAAGAAGAG+AGG | - | chr5_4:8630107-8630126 | None:intergenic | 30.0% | |
| AGTTCCAAACTTTCAATTCA+AGG | + | chr5_4:8630133-8630152 | Msa0835330:five_prime_UTR | 30.0% | |
| !! | ATTCGTTGATTATCTGGTTT+TGG | + | chr5_4:8630337-8630356 | Msa0835330:intron | 30.0% |
| ACTTCATGTTGAGATTTACA+TGG | + | chr5_4:8630494-8630513 | Msa0835330:intron | 30.0% | |
| TACCTTACTGTATGTATGTT+TGG | + | chr5_4:8630559-8630578 | Msa0835330:intron | 30.0% | |
| ATCCAAACATACATACAGTA+AGG | - | chr5_4:8630564-8630583 | None:intergenic | 30.0% | |
| TTAGAGCTTCAATAGAATCA+AGG | - | chr5_4:8630631-8630650 | None:intergenic | 30.0% | |
| TATTGTAATTCTGCCAAACT+CGG | + | chr5_4:8630679-8630698 | Msa0835330:intron | 30.0% | |
| TCTTAGTGATCAATAGTTTC+TGG | + | chr5_4:8630760-8630779 | Msa0835330:intron | 30.0% | |
| CTTAGTGATCAATAGTTTCT+GGG | + | chr5_4:8630761-8630780 | Msa0835330:intron | 30.0% | |
| GTCTCAAACAAATGTACAAT+AGG | - | chr5_4:8630849-8630868 | None:intergenic | 30.0% | |
| GTCAATCAAATTAGTCCTTA+TGG | + | chr5_4:8630964-8630983 | Msa0835330:intron | 30.0% | |
| TAACAGGTAAACTTACCATA+AGG | - | chr5_4:8630982-8631001 | None:intergenic | 30.0% | |
| ! | CTGCATGCTATAATTTTGTA+TGG | + | chr5_4:8631084-8631103 | Msa0835330:intron | 30.0% |
| GTAAAGCATAGAATTTACCT+TGG | + | chr5_4:8631106-8631125 | Msa0835330:intron | 30.0% | |
| !! | TTACCTTGGCTTTAAGATTT+AGG | + | chr5_4:8631120-8631139 | Msa0835330:intron | 30.0% |
| TTTCCTAAATCTTAAAGCCA+AGG | - | chr5_4:8631126-8631145 | None:intergenic | 30.0% | |
| AACAATTGTCAATTTAGGTC+TGG | + | chr5_4:8631174-8631193 | Msa0835330:intron | 30.0% | |
| !! | ACTCAATTTTGTTATCGGTA+TGG | + | chr5_4:8631369-8631388 | Msa0835330:intron | 30.0% |
| AGCTATATTACAAGTAGGTT+TGG | - | chr5_4:8631604-8631623 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGGTACCATGCTAT+TGG | - | chr5_4:8631819-8631838 | None:intergenic | 30.0% |
| CATGATATACTTCAACTCTT+TGG | - | chr5_4:8631859-8631878 | None:intergenic | 30.0% | |
| CACATAGATTTGGATAAGAT+TGG | - | chr5_4:8631924-8631943 | None:intergenic | 30.0% | |
| TAAGCCATTACACATAGATT+TGG | - | chr5_4:8631934-8631953 | None:intergenic | 30.0% | |
| ATGAATAATTTATCACCGAG+AGG | + | chr5_4:8632171-8632190 | Msa0835330:CDS | 30.0% | |
| TGAATAATTTATCACCGAGA+GGG | + | chr5_4:8632172-8632191 | Msa0835330:CDS | 30.0% | |
| TCTTTGAACGAATTAGTAGT+AGG | + | chr5_4:8632428-8632447 | Msa0835330:intron | 30.0% | |
| ! | AGTAGGCTCAAAATTTTCAT+AGG | + | chr5_4:8632445-8632464 | Msa0835330:intron | 30.0% |
| CTTTATACTATATGATCAGG+CGG | + | chr5_4:8632680-8632699 | Msa0835330:intron | 30.0% | |
| TAAGAAATTTCAATCGGTAG+TGG | + | chr5_4:8632994-8633013 | Msa0835330:intron | 30.0% | |
| TACTTCGAAATTGATCTACT+CGG | - | chr5_4:8633040-8633059 | None:intergenic | 30.0% | |
| !!! | AAAATTGAGTTTTGTTTGGG+GGG | + | chr5_4:8633096-8633115 | Msa0835330:intron | 30.0% |
| TTACGAGAAAGAAGAAATGA+AGG | + | chr5_4:8633267-8633286 | Msa0835330:CDS | 30.0% | |
| !!! | GAATTTCCTTTTCTAGAACT+GGG | - | chr5_4:8633528-8633547 | None:intergenic | 30.0% |
| !!! | AGAATTTCCTTTTCTAGAAC+TGG | - | chr5_4:8633529-8633548 | None:intergenic | 30.0% |
| !! | AGTTCTAGAAAAGGAAATTC+TGG | + | chr5_4:8633528-8633547 | Msa0835330:CDS | 30.0% |
| CAGAAAAATGAATGAAAGAG+AGG | + | chr5_4:8633707-8633726 | Msa0835330:CDS | 30.0% | |
| TTTGCAATTATACCATGCAA+TGG | + | chr5_4:8633734-8633753 | Msa0835330:CDS | 30.0% | |
| TAATATTGTTACCTGCACAA+AGG | - | chr5_4:8633993-8634012 | None:intergenic | 30.0% | |
| ! | CGAAATTAGATGGACAATTT+TGG | + | chr5_4:8634127-8634146 | Msa0835330:CDS | 30.0% |
| GAAAAGATCTTGAAAACAAG+AGG | + | chr5_4:8634152-8634171 | Msa0835330:CDS | 30.0% | |
| ATCTTGAAAACAAGAGGAAT+TGG | + | chr5_4:8634158-8634177 | Msa0835330:CDS | 30.0% | |
| TCTTGAAAACAAGAGGAATT+GGG | + | chr5_4:8634159-8634178 | Msa0835330:CDS | 30.0% | |
| ! | ATCTAATAGTTCTATATCCC+CGG | - | chr5_4:8634222-8634241 | None:intergenic | 30.0% |
| AGAAAAGAAGAGAGGAATTC+CGG | - | chr5_4:8630099-8630118 | None:intergenic | 35.0% | |
| GATTTCTTTCTCGTAATGCA+AGG | + | chr5_4:8630220-8630239 | Msa0835330:intron | 35.0% | |
| CTTGAATTGTGATCATGCAA+TGG | + | chr5_4:8630451-8630470 | Msa0835330:intron | 35.0% | |
| TGTATGTATGTTTGGATCAG+CGG | + | chr5_4:8630567-8630586 | Msa0835330:intron | 35.0% | |
| ATAGCTTCTGTCAATTACAG+TGG | + | chr5_4:8630654-8630673 | Msa0835330:intron | 35.0% | |
| ATTGCTAGTTGGACAAAGTT+AGG | - | chr5_4:8630922-8630941 | None:intergenic | 35.0% | |
| AGTTTACCTGTTAGACAACA+TGG | + | chr5_4:8630989-8631008 | Msa0835330:intron | 35.0% | |
| GAAAATGTGGCAAATCTACA+TGG | - | chr5_4:8631221-8631240 | None:intergenic | 35.0% | |
| ACGTTGTACGTTAGAAAATG+TGG | - | chr5_4:8631234-8631253 | None:intergenic | 35.0% | |
| ATTGTAACTTACGAGGAAAG+TGG | + | chr5_4:8631568-8631587 | Msa0835330:intron | 35.0% | |
| AACTGAATAGCTTATCGGAA+TGG | + | chr5_4:8631709-8631728 | Msa0835330:intron | 35.0% | |
| AATAGCTTATCGGAATGGAA+GGG | + | chr5_4:8631714-8631733 | Msa0835330:intron | 35.0% | |
| GAAGTAATGTACCAATAGCA+TGG | + | chr5_4:8631805-8631824 | Msa0835330:intron | 35.0% | |
| ATAAGCTGATGGCTAACATT+CGG | + | chr5_4:8632070-8632089 | Msa0835330:exon | 35.0% | |
| !! | TGCATTAATACTGATAACGG+TGG | + | chr5_4:8632270-8632289 | Msa0835330:CDS | 35.0% |
| ! | CATCCCACTTGATTTTGTAT+AGG | + | chr5_4:8632332-8632351 | Msa0835330:intron | 35.0% |
| GTGCCTATACAAAATCAAGT+GGG | - | chr5_4:8632338-8632357 | None:intergenic | 35.0% | |
| ! | CACTTGATTTTGTATAGGCA+CGG | + | chr5_4:8632337-8632356 | Msa0835330:intron | 35.0% |
| !! | GAAATTTTGATGTACCTAGC+CGG | - | chr5_4:8632369-8632388 | None:intergenic | 35.0% |
| TTCGATATTTGTACTCTTCC+TGG | + | chr5_4:8632808-8632827 | Msa0835330:CDS | 35.0% | |
| ATAAAGGGAACAAACATACC+AGG | - | chr5_4:8632829-8632848 | None:intergenic | 35.0% | |
| TGTTTGTCTCCTTGTACTAT+AGG | + | chr5_4:8632869-8632888 | Msa0835330:intron | 35.0% | |
| GTTTGTCTCCTTGTACTATA+GGG | + | chr5_4:8632870-8632889 | Msa0835330:intron | 35.0% | |
| TTTGTCTCCTTGTACTATAG+GGG | + | chr5_4:8632871-8632890 | Msa0835330:intron | 35.0% | |
| ! | GTAGGCTTGATAATATTCTC+TGG | + | chr5_4:8632893-8632912 | Msa0835330:intron | 35.0% |
| GGAATTTGTCCTACATTTGT+TGG | + | chr5_4:8633288-8633307 | Msa0835330:CDS | 35.0% | |
| ATGTGAACAGAAGCTAGAAT+TGG | + | chr5_4:8633351-8633370 | Msa0835330:CDS | 35.0% | |
| TGTGAACAGAAGCTAGAATT+GGG | + | chr5_4:8633352-8633371 | Msa0835330:CDS | 35.0% | |
| TTGATCAGAGTAAGAAAGAG+AGG | + | chr5_4:8633682-8633701 | Msa0835330:intron | 35.0% | |
| CTAGTTCACATTTGTAGAGA+TGG | + | chr5_4:8633762-8633781 | Msa0835330:CDS | 35.0% | |
| !! | CTTTGAAGTCTTTATCATGC+GGG | - | chr5_4:8633803-8633822 | None:intergenic | 35.0% |
| !! | GCTTTGAAGTCTTTATCATG+CGG | - | chr5_4:8633804-8633823 | None:intergenic | 35.0% |
| AAAGGAACTCTACAGAAATC+TGG | - | chr5_4:8633975-8633994 | None:intergenic | 35.0% | |
| GCAAGAAAGACGAAATTAGA+TGG | + | chr5_4:8634117-8634136 | Msa0835330:CDS | 35.0% | |
| ! | CCACAATGACAATCTTTTTC+CGG | + | chr5_4:8634200-8634219 | Msa0835330:exon | 35.0% |
| ! | CACAATGACAATCTTTTTCC+GGG | + | chr5_4:8634201-8634220 | Msa0835330:exon | 35.0% |
| ! | ACAATGACAATCTTTTTCCG+GGG | + | chr5_4:8634202-8634221 | Msa0835330:exon | 35.0% |
| CTGTCAGTGTAGTTGTTTGA+TGG | - | chr5_4:8629981-8630000 | None:intergenic | 40.0% | |
| AGAAGTAATTCACATACCCC+CGG | + | chr5_4:8630077-8630096 | Msa0835330:five_prime_UTR | 40.0% | |
| AAAAGAAGAGAGGAATTCCG+GGG | - | chr5_4:8630097-8630116 | None:intergenic | 40.0% | |
| GAAAAGAAGAGAGGAATTCC+GGG | - | chr5_4:8630098-8630117 | None:intergenic | 40.0% | |
| TCAAGGTCGAAATTGCTAGT+TGG | - | chr5_4:8630933-8630952 | None:intergenic | 40.0% | |
| GAATAGCTTATCGGAATGGA+AGG | + | chr5_4:8631713-8631732 | Msa0835330:intron | 40.0% | |
| ATAGCTTATCGGAATGGAAG+GGG | + | chr5_4:8631715-8631734 | Msa0835330:intron | 40.0% | |
| TTACGGTGACAAATCGCAAT+CGG | - | chr5_4:8631776-8631795 | None:intergenic | 40.0% | |
| TTGCGATTTGTCACCGTAAA+AGG | + | chr5_4:8631777-8631796 | Msa0835330:intron | 40.0% | |
| ! | ATTACTTCCACCGCCTTTTA+CGG | - | chr5_4:8631793-8631812 | None:intergenic | 40.0% |
| TTCTGCAACAAGAGATCTGT+GGG | + | chr5_4:8632212-8632231 | Msa0835330:CDS | 40.0% | |
| CGTGCCTATACAAAATCAAG+TGG | - | chr5_4:8632339-8632358 | None:intergenic | 40.0% | |
| TATACTATATGATCAGGCGG+TGG | + | chr5_4:8632683-8632702 | Msa0835330:intron | 40.0% | |
| AGCAAGCAAATCGTTCCAAT+CGG | + | chr5_4:8632733-8632752 | Msa0835330:CDS | 40.0% | |
| AAAACTCGTACTGCATCATG+TGG | - | chr5_4:8632786-8632805 | None:intergenic | 40.0% | |
| TACATCCATTCATTGCCGAT+AGG | + | chr5_4:8632964-8632983 | Msa0835330:intron | 40.0% | |
| ! | GTTTTCCTATCGGCAATGAA+TGG | - | chr5_4:8632972-8632991 | None:intergenic | 40.0% |
| ATTGATCTACTCGGTTTAGC+TGG | - | chr5_4:8633031-8633050 | None:intergenic | 40.0% | |
| GAGATCAACATAGCTGATCA+AGG | + | chr5_4:8633127-8633146 | Msa0835330:intron | 40.0% | |
| !! | GAGAAAGCACCAACAAATGT+AGG | - | chr5_4:8633300-8633319 | None:intergenic | 40.0% |
| AGAATTGGGTTTACTCACTG+TGG | + | chr5_4:8633366-8633385 | Msa0835330:CDS | 40.0% | |
| AAAACTGTTTCGGAGTCAGA+AGG | + | chr5_4:8633478-8633497 | Msa0835330:CDS | 40.0% | |
| AGAGATGGTTGTCGAACTAT+TGG | + | chr5_4:8633777-8633796 | Msa0835330:CDS | 40.0% | |
| ! | TTGCAGGAAGTATACCTACA+CGG | - | chr5_4:8633834-8633853 | None:intergenic | 40.0% |
| TGTAGGTATACTTCCTGCAA+AGG | + | chr5_4:8633834-8633853 | Msa0835330:CDS | 40.0% | |
| GTAGGTATACTTCCTGCAAA+GGG | + | chr5_4:8633835-8633854 | Msa0835330:CDS | 40.0% | |
| !! | TTGCTTGTTCGTCATTTTGC+TGG | + | chr5_4:8633864-8633883 | Msa0835330:CDS | 40.0% |
| CCGGAAAAAGATTGTCATTG+TGG | - | chr5_4:8634203-8634222 | None:intergenic | 40.0% | |
| ATAGTAAGAAATGGCCCTCA+AGG | + | chr5_4:8634293-8634312 | Msa0835330:three_prime_UTR | 40.0% | |
| GAGCAACAATTCATCCTTGA+GGG | - | chr5_4:8634310-8634329 | None:intergenic | 40.0% | |
| AAAGAAGAGAGGAATTCCGG+GGG | - | chr5_4:8630096-8630115 | None:intergenic | 45.0% | |
| GTTTGGATTGACACCGAGTT+TGG | - | chr5_4:8630695-8630714 | None:intergenic | 45.0% | |
| ! | GCATTGTTGTTGGGTACACA+TGG | - | chr5_4:8631043-8631062 | None:intergenic | 45.0% |
| AGCATGCAGCAATTTCATCC+TGG | - | chr5_4:8631073-8631092 | None:intergenic | 45.0% | |
| CGATTTGTCACCGTAAAAGG+CGG | + | chr5_4:8631780-8631799 | Msa0835330:intron | 45.0% | |
| AGCAGTGAAGCATAAGCTGA+TGG | + | chr5_4:8632059-8632078 | Msa0835330:exon | 45.0% | |
| CTTCTGCAACAAGAGATCTG+TGG | + | chr5_4:8632211-8632230 | Msa0835330:CDS | 45.0% | |
| !!! | TGGGAGCGTCTTTTCAATGA+AGG | + | chr5_4:8632231-8632250 | Msa0835330:CDS | 45.0% |
| !!! | GGGAGCGTCTTTTCAATGAA+GGG | + | chr5_4:8632232-8632251 | Msa0835330:CDS | 45.0% |
| CTCTTAAGCAGTGACATCTG+TGG | - | chr5_4:8632509-8632528 | None:intergenic | 45.0% | |
| TTCAGCATGCCTCTCAATAC+AGG | - | chr5_4:8632714-8632733 | None:intergenic | 45.0% | |
| AAGCAAATCGTTCCAATCGG+TGG | + | chr5_4:8632736-8632755 | Msa0835330:CDS | 45.0% | |
| TGGCGATCGATCTCAATCTT+TGG | + | chr5_4:8632756-8632775 | Msa0835330:CDS | 45.0% | |
| GGCGATCGATCTCAATCTTT+GGG | + | chr5_4:8632757-8632776 | Msa0835330:CDS | 45.0% | |
| GCGATCGATCTCAATCTTTG+GGG | + | chr5_4:8632758-8632777 | Msa0835330:CDS | 45.0% | |
| TCTCCTTGTACTATAGGGGT+AGG | + | chr5_4:8632875-8632894 | Msa0835330:intron | 45.0% | |
| AAGCCTACCCCTATAGTACA+AGG | - | chr5_4:8632881-8632900 | None:intergenic | 45.0% | |
| !!! | ATTGAGTTTTGTTTGGGGGG+TGG | + | chr5_4:8633099-8633118 | Msa0835330:intron | 45.0% |
| !!! | TTGAGTTTTGTTTGGGGGGT+GGG | + | chr5_4:8633100-8633119 | Msa0835330:intron | 45.0% |
| CACATTCACGCTTCAAGTGA+GGG | - | chr5_4:8633336-8633355 | None:intergenic | 45.0% | |
| TCACATTCACGCTTCAAGTG+AGG | - | chr5_4:8633337-8633356 | None:intergenic | 45.0% | |
| !! | GAGTCACCCAGTTCTAGAAA+AGG | + | chr5_4:8633519-8633538 | Msa0835330:CDS | 45.0% |
| GAACTAGAGCTTCCATTGCA+TGG | - | chr5_4:8633749-8633768 | None:intergenic | 45.0% | |
| AAGCAATTCAAGCCCTTTGC+AGG | - | chr5_4:8633850-8633869 | None:intergenic | 45.0% | |
| TCTGTAGAGTTCCTTTGTGC+AGG | + | chr5_4:8633979-8633998 | Msa0835330:CDS | 45.0% | |
| TTGGGATTGCACCATGCTTT+CGG | + | chr5_4:8634177-8634196 | Msa0835330:CDS | 45.0% | |
| GGAGCAACAATTCATCCTTG+AGG | - | chr5_4:8634311-8634330 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTACTAAATTTA+AGG | + | chr5_4:8631489-8631508 | Msa0835330:intron | 5.0% |
| !! | AACAAAAAAATTAATAATTA+AGG | - | chr5_4:8633596-8633615 | None:intergenic | 5.0% |
| GTTTGGATCAGCGGTGAGTT+TGG | + | chr5_4:8630576-8630595 | Msa0835330:intron | 50.0% | |
| CGTCGTCCATGTTGTCTAAC+AGG | - | chr5_4:8630998-8631017 | None:intergenic | 50.0% | |
| ! | GGAGACGTGGCATTGTTGTT+GGG | - | chr5_4:8631052-8631071 | None:intergenic | 50.0% |
| TGGAGACGTGGCATTGTTGT+TGG | - | chr5_4:8631053-8631072 | None:intergenic | 50.0% | |
| AACAACAATGCCACGTCTCC+AGG | + | chr5_4:8631052-8631071 | Msa0835330:intron | 50.0% | |
| GCAATTTCATCCTGGAGACG+TGG | - | chr5_4:8631065-8631084 | None:intergenic | 50.0% | |
| TCTGGAGATGTGCAGTCATG+TGG | + | chr5_4:8631192-8631211 | Msa0835330:intron | 50.0% | |
| AATCGCAATCGGAGAACCTG+TGG | - | chr5_4:8631765-8631784 | None:intergenic | 50.0% | |
| TTTGTCACCGTAAAAGGCGG+TGG | + | chr5_4:8631783-8631802 | Msa0835330:intron | 50.0% | |
| CGCATACTCGCAAGGATAAC+CGG | - | chr5_4:8632148-8632167 | None:intergenic | 50.0% | |
| CGGTTATCCTTGCGAGTATG+CGG | + | chr5_4:8632146-8632165 | Msa0835330:CDS | 50.0% | |
| GTGGCTTCTCCTGTATTGAG+AGG | + | chr5_4:8632702-8632721 | Msa0835330:CDS | 50.0% | |
| TCTACTCGGTTTAGCTGGTG+AGG | - | chr5_4:8633026-8633045 | None:intergenic | 50.0% | |
| !!! | TGAGTTTTGTTTGGGGGGTG+GGG | + | chr5_4:8633101-8633120 | Msa0835330:intron | 50.0% |
| CATTACTGTGTGATGCTCCG+CGG | + | chr5_4:8633416-8633435 | Msa0835330:CDS | 50.0% | |
| TGACAAATGAGACTGAGCCG+CGG | - | chr5_4:8633436-8633455 | None:intergenic | 50.0% | |
| CTGTTTCGGAGTCAGAAGGA+TGG | + | chr5_4:8633482-8633501 | Msa0835330:CDS | 50.0% | |
| TCAAAGCAAACCAGCCGTGT+AGG | + | chr5_4:8633817-8633836 | Msa0835330:CDS | 50.0% | |
| ! | AGGAAGTATACCTACACGGC+TGG | - | chr5_4:8633830-8633849 | None:intergenic | 50.0% |
| ! | GTTGCAAGTTGAGAGTCCCT+GGG | + | chr5_4:8633886-8633905 | Msa0835330:CDS | 50.0% |
| ! | TTGCAAGTTGAGAGTCCCTG+GGG | + | chr5_4:8633887-8633906 | Msa0835330:CDS | 50.0% |
| GTGCTCATTGCAAGAGGATG+TGG | + | chr5_4:8633913-8633932 | Msa0835330:CDS | 50.0% | |
| CAAGAGGATGTGGCAACTGT+TGG | + | chr5_4:8633923-8633942 | Msa0835330:CDS | 50.0% | |
| TGTCATTGTGGCCGAAAGCA+TGG | - | chr5_4:8634191-8634210 | None:intergenic | 50.0% | |
| ACCTGTGGAGCACACAAGGT+GGG | - | chr5_4:8631750-8631769 | None:intergenic | 55.0% | |
| AACCTGTGGAGCACACAAGG+TGG | - | chr5_4:8631751-8631770 | None:intergenic | 55.0% | |
| GAGAACCTGTGGAGCACACA+AGG | - | chr5_4:8631754-8631773 | None:intergenic | 55.0% | |
| TAACCGGTTGCTGCTGATCG+AGG | - | chr5_4:8632132-8632151 | None:intergenic | 55.0% | |
| TTCATCGCCGCATACTCGCA+AGG | - | chr5_4:8632156-8632175 | None:intergenic | 55.0% | |
| TGTATAGGCACGGATGCTGC+CGG | + | chr5_4:8632347-8632366 | Msa0835330:intron | 55.0% | |
| TGAGATCGATCGCCACCGAT+TGG | - | chr5_4:8632751-8632770 | None:intergenic | 55.0% | |
| !!! | GAGTTTTGTTTGGGGGGTGG+GGG | + | chr5_4:8633102-8633121 | Msa0835330:intron | 55.0% |
| ! | GGTTGCAAGTTGAGAGTCCC+TGG | + | chr5_4:8633885-8633904 | Msa0835330:CDS | 55.0% |
| ! | TGCAAGTTGAGAGTCCCTGG+GGG | + | chr5_4:8633888-8633907 | Msa0835330:CDS | 55.0% |
| TGCAATGAGCACAACCCCCA+GGG | - | chr5_4:8633905-8633924 | None:intergenic | 55.0% | |
| TTGCAATGAGCACAACCCCC+AGG | - | chr5_4:8633906-8633925 | None:intergenic | 55.0% | |
| GGGGTTGTGCTCATTGCAAG+AGG | + | chr5_4:8633907-8633926 | Msa0835330:CDS | 55.0% | |
| GTGAGTTTGGCGTGTGCGTC+TGG | + | chr5_4:8630589-8630608 | Msa0835330:intron | 60.0% | |
| ACCCACCTTGTGTGCTCCAC+AGG | + | chr5_4:8631746-8631765 | Msa0835330:intron | 60.0% | |
| CGAGGCGAAGGAGGTGGTAT+CGG | - | chr5_4:8632114-8632133 | None:intergenic | 60.0% | |
| GTTGCTGCTGATCGAGGCGA+AGG | - | chr5_4:8632126-8632145 | None:intergenic | 60.0% | |
| TCGCCTCGATCAGCAGCAAC+CGG | + | chr5_4:8632126-8632145 | Msa0835330:CDS | 60.0% | |
| ACACAGCTGCTTCGCCCTCT+CGG | - | chr5_4:8632189-8632208 | None:intergenic | 60.0% | |
| !! | TTTTGTTTGGGGGGTGGGGG+AGG | + | chr5_4:8633105-8633124 | Msa0835330:intron | 60.0% |
| GCTGATCGAGGCGAAGGAGG+TGG | - | chr5_4:8632120-8632139 | None:intergenic | 65.0% | |
| GCTGCTGATCGAGGCGAAGG+AGG | - | chr5_4:8632123-8632142 | None:intergenic | 65.0% | |
| ! | AGGCACGGATGCTGCCGGCT+AGG | + | chr5_4:8632352-8632371 | Msa0835330:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 8629970 | 8634520 | 8629970 | ID=Msa0835330;Name=Msa0835330 |
| chr5_4 | mRNA | 8629970 | 8634520 | 8629970 | ID=Msa0835330-mRNA-1;Parent=Msa0835330;Name=Msa0835330-mRNA-1;_AED=0.14;_eAED=0.14;_QI=231|1|1|1|0.8|0.83|6|312|370 |
| chr5_4 | exon | 8629970 | 8630181 | 8629970 | ID=Msa0835330-mRNA-1:exon:3811;Parent=Msa0835330-mRNA-1 |
| chr5_4 | exon | 8632059 | 8632320 | 8632059 | ID=Msa0835330-mRNA-1:exon:3812;Parent=Msa0835330-mRNA-1 |
| chr5_4 | exon | 8632699 | 8632829 | 8632699 | ID=Msa0835330-mRNA-1:exon:3813;Parent=Msa0835330-mRNA-1 |
| chr5_4 | exon | 8633267 | 8633573 | 8633267 | ID=Msa0835330-mRNA-1:exon:3814;Parent=Msa0835330-mRNA-1 |
| chr5_4 | exon | 8633690 | 8634000 | 8633690 | ID=Msa0835330-mRNA-1:exon:3815;Parent=Msa0835330-mRNA-1 |
| chr5_4 | exon | 8634088 | 8634520 | 8634088 | ID=Msa0835330-mRNA-1:exon:3816;Parent=Msa0835330-mRNA-1 |
| chr5_4 | five_prime_UTR | 8629970 | 8630181 | 8629970 | ID=Msa0835330-mRNA-1:five_prime_utr;Parent=Msa0835330-mRNA-1 |
| chr5_4 | five_prime_UTR | 8632059 | 8632077 | 8632059 | ID=Msa0835330-mRNA-1:five_prime_utr;Parent=Msa0835330-mRNA-1 |
| chr5_4 | CDS | 8632078 | 8632320 | 8632078 | ID=Msa0835330-mRNA-1:cds;Parent=Msa0835330-mRNA-1 |
| chr5_4 | CDS | 8632699 | 8632829 | 8632699 | ID=Msa0835330-mRNA-1:cds;Parent=Msa0835330-mRNA-1 |
| chr5_4 | CDS | 8633267 | 8633573 | 8633267 | ID=Msa0835330-mRNA-1:cds;Parent=Msa0835330-mRNA-1 |
| chr5_4 | CDS | 8633690 | 8634000 | 8633690 | ID=Msa0835330-mRNA-1:cds;Parent=Msa0835330-mRNA-1 |
| chr5_4 | CDS | 8634088 | 8634208 | 8634088 | ID=Msa0835330-mRNA-1:cds;Parent=Msa0835330-mRNA-1 |
| chr5_4 | three_prime_UTR | 8634209 | 8634520 | 8634209 | ID=Msa0835330-mRNA-1:three_prime_utr;Parent=Msa0835330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
