Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716310 | XP_003611950.1 | 91.827 | 208 | 16 | 1 | 1 | 208 | 1 | 207 | 4.85e-129 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716310 | sp|O23208|ATB40_ARATH | 49.761 | 209 | 98 | 5 | 7 | 210 | 10 | 216 | 1.27e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716310 | G7KC76 | 91.827 | 208 | 16 | 1 | 1 | 208 | 1 | 207 | 2.32e-129 | 372 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0716310 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0716310 | Msa0757610 | 0.907406 | 5.247030e-81 | -8.615850e-47 |
| Msa0716310 | Msa0798910 | 0.826338 | 2.865207e-54 | -8.615850e-47 |
| Msa0716310 | Msa1415010 | 0.886953 | 2.183442e-72 | -8.615850e-47 |
| Msa0716310 | Msa1434420 | -0.824244 | 8.964473e-54 | -8.615850e-47 |
| Msa0230610 | Msa0716310 | 0.820643 | 6.153024e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716310 | MtrunA17_Chr5g0403701 | 91.827 | 208 | 16 | 1 | 1 | 208 | 1 | 207 | 4.46e-133 | 372 |
| Msa0716310 | MtrunA17_Chr5g0403691 | 80.631 | 222 | 30 | 3 | 1 | 210 | 1 | 221 | 6.80e-117 | 331 |
| Msa0716310 | MtrunA17_Chr4g0060031 | 38.776 | 147 | 73 | 3 | 31 | 160 | 62 | 208 | 2.19e-23 | 95.5 |
| Msa0716310 | MtrunA17_Chr3g0123691 | 60.811 | 74 | 29 | 0 | 54 | 127 | 60 | 133 | 2.58e-22 | 92.0 |
| Msa0716310 | MtrunA17_Chr8g0381741 | 55.422 | 83 | 37 | 0 | 45 | 127 | 45 | 127 | 4.70e-22 | 91.7 |
| Msa0716310 | MtrunA17_Chr6g0450991 | 47.273 | 110 | 49 | 2 | 54 | 156 | 67 | 174 | 5.98e-22 | 90.9 |
| Msa0716310 | MtrunA17_Chr6g0453021 | 50.505 | 99 | 49 | 0 | 45 | 143 | 87 | 185 | 9.40e-21 | 87.4 |
| Msa0716310 | MtrunA17_Chr8g0362151 | 44.898 | 98 | 54 | 0 | 46 | 143 | 69 | 166 | 2.33e-20 | 86.7 |
| Msa0716310 | MtrunA17_Chr5g0415941 | 60.563 | 71 | 28 | 0 | 54 | 124 | 87 | 157 | 2.33e-20 | 87.0 |
| Msa0716310 | MtrunA17_Chr5g0416391 | 44.737 | 114 | 58 | 1 | 46 | 159 | 69 | 177 | 4.33e-20 | 85.9 |
| Msa0716310 | MtrunA17_Chr3g0127511 | 47.959 | 98 | 44 | 1 | 56 | 153 | 40 | 130 | 6.16e-20 | 84.7 |
| Msa0716310 | MtrunA17_Chr8g0362751 | 58.571 | 70 | 29 | 0 | 54 | 123 | 89 | 158 | 7.17e-20 | 85.1 |
| Msa0716310 | MtrunA17_Chr7g0265521 | 45.918 | 98 | 53 | 0 | 48 | 145 | 57 | 154 | 3.87e-19 | 82.4 |
| Msa0716310 | MtrunA17_Chr1g0179581 | 51.250 | 80 | 39 | 0 | 54 | 133 | 28 | 107 | 5.17e-19 | 79.0 |
| Msa0716310 | MtrunA17_Chr3g0119291 | 43.396 | 106 | 60 | 0 | 48 | 153 | 53 | 158 | 5.62e-19 | 82.4 |
| Msa0716310 | MtrunA17_Chr8g0346251 | 44.248 | 113 | 63 | 0 | 58 | 170 | 45 | 157 | 2.08e-17 | 77.8 |
| Msa0716310 | MtrunA17_Chr7g0217111 | 47.778 | 90 | 47 | 0 | 54 | 143 | 80 | 169 | 6.18e-16 | 74.3 |
| Msa0716310 | MtrunA17_Chr4g0044091 | 43.564 | 101 | 43 | 1 | 54 | 154 | 65 | 151 | 1.11e-13 | 67.0 |
| Msa0716310 | MtrunA17_Chr4g0055851 | 43.564 | 101 | 43 | 1 | 54 | 154 | 120 | 206 | 1.72e-13 | 67.8 |
| Msa0716310 | MtrunA17_Chr8g0335131 | 45.263 | 95 | 47 | 1 | 54 | 143 | 146 | 240 | 7.04e-13 | 66.2 |
| Msa0716310 | MtrunA17_Chr1g0175651 | 38.938 | 113 | 55 | 1 | 42 | 154 | 142 | 240 | 1.03e-12 | 65.5 |
| Msa0716310 | MtrunA17_Chr2g0308611 | 38.017 | 121 | 61 | 1 | 34 | 154 | 180 | 286 | 1.30e-12 | 65.5 |
| Msa0716310 | MtrunA17_Chr1g0151971 | 42.574 | 101 | 44 | 1 | 54 | 154 | 130 | 216 | 1.59e-12 | 65.1 |
| Msa0716310 | MtrunA17_Chr4g0054421 | 45.263 | 95 | 47 | 1 | 54 | 143 | 127 | 221 | 1.62e-12 | 64.7 |
| Msa0716310 | MtrunA17_Chr7g0258831 | 40.566 | 106 | 49 | 1 | 49 | 154 | 155 | 246 | 8.46e-12 | 63.2 |
| Msa0716310 | MtrunA17_Chr5g0400781 | 45.263 | 95 | 47 | 1 | 54 | 143 | 123 | 217 | 1.40e-11 | 62.0 |
| Msa0716310 | MtrunA17_Chr3g0135331 | 43.836 | 73 | 41 | 0 | 52 | 124 | 143 | 215 | 4.63e-11 | 60.8 |
| Msa0716310 | MtrunA17_Chr5g0399491 | 43.158 | 95 | 49 | 1 | 54 | 143 | 136 | 230 | 5.76e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716310 | AT4G36740.2 | 50.476 | 210 | 96 | 6 | 7 | 210 | 10 | 217 | 3.77e-57 | 180 |
| Msa0716310 | AT4G36740.1 | 49.761 | 209 | 98 | 5 | 7 | 210 | 10 | 216 | 1.29e-56 | 179 |
| Msa0716310 | AT2G18550.1 | 46.667 | 225 | 100 | 9 | 1 | 210 | 1 | 220 | 3.68e-56 | 177 |
| Msa0716310 | AT5G66700.1 | 45.909 | 220 | 105 | 4 | 5 | 210 | 9 | 228 | 1.59e-47 | 156 |
| Msa0716310 | AT1G69780.1 | 38.961 | 154 | 80 | 3 | 2 | 143 | 23 | 174 | 3.30e-24 | 97.4 |
| Msa0716310 | AT3G01470.1 | 33.333 | 207 | 108 | 5 | 2 | 178 | 13 | 219 | 1.66e-23 | 95.1 |
| Msa0716310 | AT4G40060.1 | 63.380 | 71 | 26 | 0 | 54 | 124 | 59 | 129 | 6.66e-22 | 91.3 |
| Msa0716310 | AT2G22430.1 | 64.789 | 71 | 25 | 0 | 54 | 124 | 62 | 132 | 6.97e-22 | 91.7 |
| Msa0716310 | AT1G26960.1 | 42.647 | 136 | 73 | 1 | 54 | 184 | 71 | 206 | 2.34e-21 | 89.0 |
| Msa0716310 | AT5G65310.2 | 57.143 | 77 | 33 | 0 | 43 | 119 | 43 | 119 | 2.44e-21 | 89.7 |
| Msa0716310 | AT5G65310.1 | 57.143 | 77 | 33 | 0 | 43 | 119 | 61 | 137 | 2.93e-21 | 89.7 |
| Msa0716310 | AT5G53980.1 | 36.552 | 145 | 90 | 1 | 45 | 187 | 2 | 146 | 9.35e-21 | 85.1 |
| Msa0716310 | AT2G46680.2 | 48.000 | 100 | 51 | 1 | 48 | 146 | 26 | 125 | 5.28e-20 | 85.5 |
| Msa0716310 | AT5G03790.1 | 47.872 | 94 | 48 | 1 | 46 | 139 | 70 | 162 | 5.62e-20 | 85.1 |
| Msa0716310 | AT2G46680.1 | 45.370 | 108 | 52 | 1 | 48 | 155 | 26 | 126 | 7.35e-20 | 85.1 |
| Msa0716310 | AT5G03790.2 | 46.809 | 94 | 49 | 1 | 46 | 139 | 70 | 162 | 2.06e-19 | 82.4 |
| Msa0716310 | AT2G36610.1 | 45.370 | 108 | 51 | 2 | 46 | 145 | 63 | 170 | 3.94e-19 | 81.6 |
| Msa0716310 | AT3G61890.1 | 44.444 | 99 | 55 | 0 | 57 | 155 | 33 | 131 | 4.37e-18 | 79.7 |
| Msa0716310 | AT3G01220.1 | 51.852 | 81 | 38 | 1 | 45 | 124 | 77 | 157 | 4.58e-18 | 80.9 |
| Msa0716310 | AT5G15150.1 | 58.209 | 67 | 28 | 0 | 54 | 120 | 115 | 181 | 7.78e-18 | 80.5 |
| Msa0716310 | AT1G27045.2 | 40.152 | 132 | 66 | 1 | 52 | 170 | 15 | 146 | 1.82e-17 | 77.0 |
| Msa0716310 | AT1G27045.5 | 40.152 | 132 | 66 | 1 | 52 | 170 | 23 | 154 | 2.17e-17 | 77.0 |
| Msa0716310 | AT1G27045.3 | 40.152 | 132 | 66 | 1 | 52 | 170 | 23 | 154 | 2.17e-17 | 77.0 |
| Msa0716310 | AT1G27045.1 | 42.149 | 121 | 57 | 1 | 52 | 159 | 66 | 186 | 2.95e-17 | 77.4 |
| Msa0716310 | AT1G27045.4 | 55.882 | 68 | 30 | 0 | 52 | 119 | 66 | 133 | 2.68e-16 | 75.5 |
| Msa0716310 | AT2G22800.1 | 45.161 | 93 | 46 | 1 | 54 | 141 | 113 | 205 | 1.22e-12 | 65.5 |
| Msa0716310 | AT4G16780.1 | 41.905 | 105 | 51 | 2 | 44 | 143 | 124 | 223 | 3.27e-12 | 64.3 |
| Msa0716310 | AT2G01430.1 | 37.607 | 117 | 55 | 2 | 54 | 166 | 139 | 241 | 4.71e-12 | 63.9 |
| Msa0716310 | AT4G17460.1 | 40.385 | 104 | 57 | 1 | 45 | 143 | 126 | 229 | 1.12e-11 | 62.8 |
| Msa0716310 | AT4G37790.1 | 44.086 | 93 | 47 | 1 | 54 | 141 | 126 | 218 | 1.49e-11 | 62.4 |
| Msa0716310 | AT5G06710.1 | 36.667 | 120 | 62 | 1 | 35 | 154 | 171 | 276 | 4.06e-11 | 61.6 |
| Msa0716310 | AT5G47370.1 | 34.884 | 129 | 79 | 1 | 20 | 143 | 96 | 224 | 9.04e-11 | 60.5 |
Find 41 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGTTGAGAAATTATT+TGG | 0.079303 | 5_1:-9781306 | None:intergenic |
| TCCACCTAGCCCTTCGATTC+TGG | 0.220585 | 5_1:-9781631 | None:intergenic |
| TGATGAACAAATGAAAATTT+TGG | 0.274227 | 5_1:+9781511 | Msa0716310:CDS |
| GAACCAAACTGCAACTTGTC+TGG | 0.307826 | 5_1:-9781609 | None:intergenic |
| GAAGTACTAGAGCTACTATT+TGG | 0.364392 | 5_1:-9782693 | None:intergenic |
| ATCCCAGACAAGTTGCAGTT+TGG | 0.404850 | 5_1:+9781606 | Msa0716310:CDS |
| TATGTAAATTAATTGTTCAT+AGG | 0.406700 | 5_1:+9782927 | Msa0716310:three_prime_UTR |
| TTCACAATCCATGGAAATAG+TGG | 0.417032 | 5_1:+9782722 | Msa0716310:CDS |
| TATAAAGATTAATCCATTCC+TGG | 0.431532 | 5_1:-9782833 | None:intergenic |
| TTCATCAATTTCACAATCCA+TGG | 0.435367 | 5_1:+9782713 | Msa0716310:CDS |
| ACCTTGTTGAGAAATTATTT+GGG | 0.435398 | 5_1:-9781305 | None:intergenic |
| AGAGGTATACCTTGGTTTCA+AGG | 0.440743 | 5_1:-9781727 | None:intergenic |
| ATTTGGGTGTATTCACAAGC+TGG | 0.458844 | 5_1:-9781289 | None:intergenic |
| ACTGAGACATAAGCATCATT+TGG | 0.463969 | 5_1:-9781261 | None:intergenic |
| TCAAATTCATCAAGTAATTG+TGG | 0.464011 | 5_1:-9782747 | None:intergenic |
| TTGTGGGTCCACTATTTCCA+TGG | 0.473816 | 5_1:-9782730 | None:intergenic |
| GATAGACTTGCAATGGAGCT+TGG | 0.475779 | 5_1:+9781578 | Msa0716310:CDS |
| CAAATTCATCAAGTAATTGT+GGG | 0.494706 | 5_1:-9782746 | None:intergenic |
| TAAACTTGAGTCAGAGAAGA+AGG | 0.499532 | 5_1:+9781556 | Msa0716310:CDS |
| AACCAAACTGCAACTTGTCT+GGG | 0.501567 | 5_1:-9781608 | None:intergenic |
| CAGTTTGGTTCCAGAATCGA+AGG | 0.504708 | 5_1:+9781621 | Msa0716310:CDS |
| TTTAGGGGAGAAGAAGCTAA+AGG | 0.505640 | 5_1:+9781409 | Msa0716310:intron |
| TTTGGGTGTATTCACAAGCT+GGG | 0.519334 | 5_1:-9781288 | None:intergenic |
| GGTTCCAGAATCGAAGGGCT+AGG | 0.526167 | 5_1:+9781627 | Msa0716310:CDS |
| AGCATTTGTAGATAATGTAA+AGG | 0.526757 | 5_1:+9782893 | Msa0716310:three_prime_UTR |
| ATTACTTCAACGGCCAGGAA+TGG | 0.529342 | 5_1:+9782820 | Msa0716310:CDS |
| TTGAAGTAATATGTCGCATC+CGG | 0.533058 | 5_1:-9782807 | None:intergenic |
| GCAGCTTTCTGAGGCAGAGA+AGG | 0.540038 | 5_1:+9782650 | Msa0716310:CDS |
| GAAGAAGGATAGACTTGCAA+TGG | 0.545678 | 5_1:+9781571 | Msa0716310:CDS |
| AGCTACTATTTGGCTCTCGA+AGG | 0.571565 | 5_1:-9782683 | None:intergenic |
| GATGCGACATATTACTTCAA+CGG | 0.573154 | 5_1:+9782810 | Msa0716310:CDS |
| AAGGAGACACTTCTCAAGCA+TGG | 0.588692 | 5_1:-9781708 | None:intergenic |
| GCTAACAGAGCAGCTTTCTG+AGG | 0.593252 | 5_1:+9782641 | Msa0716310:CDS |
| CGTAGTAAGAAGAACAAAGG+TGG | 0.606299 | 5_1:+9781443 | Msa0716310:CDS |
| GAAGTGTCTCCTTGAAACCA+AGG | 0.638232 | 5_1:+9781718 | Msa0716310:CDS |
| GACATATTACTTCAACGGCC+AGG | 0.639581 | 5_1:+9782815 | Msa0716310:CDS |
| ACCCAAATAATTTCTCAACA+AGG | 0.645027 | 5_1:+9781304 | Msa0716310:CDS |
| TCCAGAATCGAAGGGCTAGG+TGG | 0.655135 | 5_1:+9781630 | Msa0716310:CDS |
| AAGCGTAGTAAGAAGAACAA+AGG | 0.668285 | 5_1:+9781440 | Msa0716310:CDS |
| GAGACACTTCTCAAGCATGG+TGG | 0.690142 | 5_1:-9781705 | None:intergenic |
| AGTTTGGTTCCAGAATCGAA+GGG | 0.690392 | 5_1:+9781622 | Msa0716310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTGTTATGTTTTTTT+AGG | + | chr5_1:9781392-9781411 | Msa0716310:intron | 10.0% |
| !!! | ATTTTTGTTATGTTTTTTTA+GGG | + | chr5_1:9781393-9781412 | Msa0716310:intron | 10.0% |
| !! | TTATTAAAAATTAAAATCAG+TGG | + | chr5_1:9781804-9781823 | Msa0716310:intron | 10.0% |
| !! | AATATATAAAAACAAAAACA+AGG | + | chr5_1:9782312-9782331 | Msa0716310:intron | 10.0% |
| !!! | TATTTTTGTTATGTTTTTTT+AGG | + | chr5_1:9781392-9781411 | Msa0716310:intron | 10.0% |
| !!! | ATTTTTGTTATGTTTTTTTA+GGG | + | chr5_1:9781393-9781412 | Msa0716310:intron | 10.0% |
| !! | TTATTAAAAATTAAAATCAG+TGG | + | chr5_1:9781804-9781823 | Msa0716310:intron | 10.0% |
| !! | AATATATAAAAACAAAAACA+AGG | + | chr5_1:9782312-9782331 | Msa0716310:intron | 10.0% |
| !!! | TTTTTGTTATGTTTTTTTAG+GGG | + | chr5_1:9781394-9781413 | Msa0716310:intron | 15.0% |
| !! | AGTTTAATAAAATTGTATCT+AGG | - | chr5_1:9781758-9781777 | None:intergenic | 15.0% |
| !!! | TTTATCATTTTTCATTTAAG+GGG | - | chr5_1:9782126-9782145 | None:intergenic | 15.0% |
| !!! | CTTTATCATTTTTCATTTAA+GGG | - | chr5_1:9782127-9782146 | None:intergenic | 15.0% |
| !!! | ACTTTATCATTTTTCATTTA+AGG | - | chr5_1:9782128-9782147 | None:intergenic | 15.0% |
| !! | AAAATGAAGAAAATATTGTA+CGG | - | chr5_1:9782403-9782422 | None:intergenic | 15.0% |
| !! | TATGTAAATTAATTGTTCAT+AGG | + | chr5_1:9782927-9782946 | Msa0716310:three_prime_UTR | 15.0% |
| !!! | TTTTTGTTATGTTTTTTTAG+GGG | + | chr5_1:9781394-9781413 | Msa0716310:intron | 15.0% |
| !! | AGTTTAATAAAATTGTATCT+AGG | - | chr5_1:9781758-9781777 | None:intergenic | 15.0% |
| !!! | TTTATCATTTTTCATTTAAG+GGG | - | chr5_1:9782126-9782145 | None:intergenic | 15.0% |
| !!! | CTTTATCATTTTTCATTTAA+GGG | - | chr5_1:9782127-9782146 | None:intergenic | 15.0% |
| !!! | ACTTTATCATTTTTCATTTA+AGG | - | chr5_1:9782128-9782147 | None:intergenic | 15.0% |
| !! | AAAATGAAGAAAATATTGTA+CGG | - | chr5_1:9782403-9782422 | None:intergenic | 15.0% |
| !! | TATGTAAATTAATTGTTCAT+AGG | + | chr5_1:9782927-9782946 | Msa0716310:three_prime_UTR | 15.0% |
| !!! | TGATGAACAAATGAAAATTT+TGG | + | chr5_1:9781511-9781530 | Msa0716310:CDS | 20.0% |
| !!! | AAAATTTTGGAGGAAAATTT+TGG | + | chr5_1:9781524-9781543 | Msa0716310:CDS | 20.0% |
| !! | CACTAGTAATATAATATTGT+TGG | - | chr5_1:9781879-9781898 | None:intergenic | 20.0% |
| !!! | GTACAATATTTTCTTCATTT+TGG | + | chr5_1:9782402-9782421 | Msa0716310:intron | 20.0% |
| !! | TCTAAGCAAAGATTATTAAA+AGG | - | chr5_1:9782552-9782571 | None:intergenic | 20.0% |
| !! | ATTAATTGAACGAACATATA+AGG | - | chr5_1:9782604-9782623 | None:intergenic | 20.0% |
| !!! | TGATGAACAAATGAAAATTT+TGG | + | chr5_1:9781511-9781530 | Msa0716310:CDS | 20.0% |
| !!! | AAAATTTTGGAGGAAAATTT+TGG | + | chr5_1:9781524-9781543 | Msa0716310:CDS | 20.0% |
| !! | CACTAGTAATATAATATTGT+TGG | - | chr5_1:9781879-9781898 | None:intergenic | 20.0% |
| !!! | GTACAATATTTTCTTCATTT+TGG | + | chr5_1:9782402-9782421 | Msa0716310:intron | 20.0% |
| !! | TCTAAGCAAAGATTATTAAA+AGG | - | chr5_1:9782552-9782571 | None:intergenic | 20.0% |
| !! | ATTAATTGAACGAACATATA+AGG | - | chr5_1:9782604-9782623 | None:intergenic | 20.0% |
| ! | ACCTTGTTGAGAAATTATTT+GGG | - | chr5_1:9781308-9781327 | None:intergenic | 25.0% |
| ! | AACCTTGTTGAGAAATTATT+TGG | - | chr5_1:9781309-9781328 | None:intergenic | 25.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | + | chr5_1:9781480-9781499 | Msa0716310:CDS | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | - | chr5_1:9781484-9781503 | None:intergenic | 25.0% |
| !! | TGAACAAATGAAAATTTTGG+AGG | + | chr5_1:9781514-9781533 | Msa0716310:CDS | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+GGG | - | chr5_1:9782053-9782072 | None:intergenic | 25.0% |
| ! | TATTCTCTCTTTCAACATTT+AGG | - | chr5_1:9782054-9782073 | None:intergenic | 25.0% |
| ! | GAGAACTTTAATAATGTGAA+CGG | - | chr5_1:9782216-9782235 | None:intergenic | 25.0% |
| ! | AGAAAATATTGTACGGAATT+AGG | - | chr5_1:9782396-9782415 | None:intergenic | 25.0% |
| ! | AACGAACATATAAGGTAATT+AGG | - | chr5_1:9782596-9782615 | None:intergenic | 25.0% |
| ! | CAAATTCATCAAGTAATTGT+GGG | - | chr5_1:9782749-9782768 | None:intergenic | 25.0% |
| ! | TCAAATTCATCAAGTAATTG+TGG | - | chr5_1:9782750-9782769 | None:intergenic | 25.0% |
| ! | TATAAAGATTAATCCATTCC+TGG | - | chr5_1:9782836-9782855 | None:intergenic | 25.0% |
| ! | AGCATTTGTAGATAATGTAA+AGG | + | chr5_1:9782893-9782912 | Msa0716310:three_prime_UTR | 25.0% |
| ! | ACCTTGTTGAGAAATTATTT+GGG | - | chr5_1:9781308-9781327 | None:intergenic | 25.0% |
| ! | AACCTTGTTGAGAAATTATT+TGG | - | chr5_1:9781309-9781328 | None:intergenic | 25.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | + | chr5_1:9781480-9781499 | Msa0716310:CDS | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | - | chr5_1:9781484-9781503 | None:intergenic | 25.0% |
| !! | TGAACAAATGAAAATTTTGG+AGG | + | chr5_1:9781514-9781533 | Msa0716310:CDS | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+GGG | - | chr5_1:9782053-9782072 | None:intergenic | 25.0% |
| ! | TATTCTCTCTTTCAACATTT+AGG | - | chr5_1:9782054-9782073 | None:intergenic | 25.0% |
| ! | GAGAACTTTAATAATGTGAA+CGG | - | chr5_1:9782216-9782235 | None:intergenic | 25.0% |
| ! | AGAAAATATTGTACGGAATT+AGG | - | chr5_1:9782396-9782415 | None:intergenic | 25.0% |
| ! | AACGAACATATAAGGTAATT+AGG | - | chr5_1:9782596-9782615 | None:intergenic | 25.0% |
| ! | CAAATTCATCAAGTAATTGT+GGG | - | chr5_1:9782749-9782768 | None:intergenic | 25.0% |
| ! | TCAAATTCATCAAGTAATTG+TGG | - | chr5_1:9782750-9782769 | None:intergenic | 25.0% |
| ! | TATAAAGATTAATCCATTCC+TGG | - | chr5_1:9782836-9782855 | None:intergenic | 25.0% |
| ! | AGCATTTGTAGATAATGTAA+AGG | + | chr5_1:9782893-9782912 | Msa0716310:three_prime_UTR | 25.0% |
| ACCCAAATAATTTCTCAACA+AGG | + | chr5_1:9781304-9781323 | Msa0716310:CDS | 30.0% | |
| ATTGTTGGAGAAATGATGAT+TGG | - | chr5_1:9781864-9781883 | None:intergenic | 30.0% | |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_1:9781923-9781942 | Msa0716310:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_1:9781924-9781943 | Msa0716310:intron | 30.0% | |
| TTCTCTCTTTCAACATTTAG+GGG | - | chr5_1:9782052-9782071 | None:intergenic | 30.0% | |
| ACATAACATGAATGATCATG+TGG | - | chr5_1:9782248-9782267 | None:intergenic | 30.0% | |
| !! | AGTGTTGTTTGTTGTCTTTA+AGG | - | chr5_1:9782355-9782374 | None:intergenic | 30.0% |
| TCTACTTCATGATAACAAGT+TGG | - | chr5_1:9782441-9782460 | None:intergenic | 30.0% | |
| TTCATCAATTTCACAATCCA+TGG | + | chr5_1:9782713-9782732 | Msa0716310:CDS | 30.0% | |
| ACCCAAATAATTTCTCAACA+AGG | + | chr5_1:9781304-9781323 | Msa0716310:CDS | 30.0% | |
| ATTGTTGGAGAAATGATGAT+TGG | - | chr5_1:9781864-9781883 | None:intergenic | 30.0% | |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_1:9781923-9781942 | Msa0716310:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_1:9781924-9781943 | Msa0716310:intron | 30.0% | |
| TTCTCTCTTTCAACATTTAG+GGG | - | chr5_1:9782052-9782071 | None:intergenic | 30.0% | |
| ACATAACATGAATGATCATG+TGG | - | chr5_1:9782248-9782267 | None:intergenic | 30.0% | |
| !! | AGTGTTGTTTGTTGTCTTTA+AGG | - | chr5_1:9782355-9782374 | None:intergenic | 30.0% |
| TCTACTTCATGATAACAAGT+TGG | - | chr5_1:9782441-9782460 | None:intergenic | 30.0% | |
| TTCATCAATTTCACAATCCA+TGG | + | chr5_1:9782713-9782732 | Msa0716310:CDS | 30.0% | |
| ACTGAGACATAAGCATCATT+TGG | - | chr5_1:9781264-9781283 | None:intergenic | 35.0% | |
| AAGCGTAGTAAGAAGAACAA+AGG | + | chr5_1:9781440-9781459 | Msa0716310:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_1:9781556-9781575 | Msa0716310:CDS | 35.0% | |
| AATTGTATCTAGGAAGCAAG+AGG | - | chr5_1:9781748-9781767 | None:intergenic | 35.0% | |
| TTGAAAGAGAGAATAAGCAC+TGG | + | chr5_1:9782059-9782078 | Msa0716310:intron | 35.0% | |
| CTTTAATAATGTGAACGGCT+TGG | - | chr5_1:9782211-9782230 | None:intergenic | 35.0% | |
| ! | TTCATTTTGGACCTTTCTCA+AGG | + | chr5_1:9782415-9782434 | Msa0716310:intron | 35.0% |
| ! | GAAGTACTAGAGCTACTATT+TGG | - | chr5_1:9782696-9782715 | None:intergenic | 35.0% |
| TTCACAATCCATGGAAATAG+TGG | + | chr5_1:9782722-9782741 | Msa0716310:CDS | 35.0% | |
| !! | TGATGATGTGTTTTTCATGC+CGG | + | chr5_1:9782788-9782807 | Msa0716310:CDS | 35.0% |
| TTGAAGTAATATGTCGCATC+CGG | - | chr5_1:9782810-9782829 | None:intergenic | 35.0% | |
| GATGCGACATATTACTTCAA+CGG | + | chr5_1:9782810-9782829 | Msa0716310:CDS | 35.0% | |
| ACTGAGACATAAGCATCATT+TGG | - | chr5_1:9781264-9781283 | None:intergenic | 35.0% | |
| AAGCGTAGTAAGAAGAACAA+AGG | + | chr5_1:9781440-9781459 | Msa0716310:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_1:9781556-9781575 | Msa0716310:CDS | 35.0% | |
| AATTGTATCTAGGAAGCAAG+AGG | - | chr5_1:9781748-9781767 | None:intergenic | 35.0% | |
| TTGAAAGAGAGAATAAGCAC+TGG | + | chr5_1:9782059-9782078 | Msa0716310:intron | 35.0% | |
| CTTTAATAATGTGAACGGCT+TGG | - | chr5_1:9782211-9782230 | None:intergenic | 35.0% | |
| ! | TTCATTTTGGACCTTTCTCA+AGG | + | chr5_1:9782415-9782434 | Msa0716310:intron | 35.0% |
| ! | GAAGTACTAGAGCTACTATT+TGG | - | chr5_1:9782696-9782715 | None:intergenic | 35.0% |
| TTCACAATCCATGGAAATAG+TGG | + | chr5_1:9782722-9782741 | Msa0716310:CDS | 35.0% | |
| !! | TGATGATGTGTTTTTCATGC+CGG | + | chr5_1:9782788-9782807 | Msa0716310:CDS | 35.0% |
| TTGAAGTAATATGTCGCATC+CGG | - | chr5_1:9782810-9782829 | None:intergenic | 35.0% | |
| GATGCGACATATTACTTCAA+CGG | + | chr5_1:9782810-9782829 | Msa0716310:CDS | 35.0% | |
| TTTGGGTGTATTCACAAGCT+GGG | - | chr5_1:9781291-9781310 | None:intergenic | 40.0% | |
| ATTTGGGTGTATTCACAAGC+TGG | - | chr5_1:9781292-9781311 | None:intergenic | 40.0% | |
| TTTAGGGGAGAAGAAGCTAA+AGG | + | chr5_1:9781409-9781428 | Msa0716310:intron | 40.0% | |
| CGTAGTAAGAAGAACAAAGG+TGG | + | chr5_1:9781443-9781462 | Msa0716310:CDS | 40.0% | |
| GAAGAAGGATAGACTTGCAA+TGG | + | chr5_1:9781571-9781590 | Msa0716310:CDS | 40.0% | |
| AACCAAACTGCAACTTGTCT+GGG | - | chr5_1:9781611-9781630 | None:intergenic | 40.0% | |
| ! | AGTTTGGTTCCAGAATCGAA+GGG | + | chr5_1:9781622-9781641 | Msa0716310:CDS | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_1:9781730-9781749 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_1:9781952-9781971 | Msa0716310:intron | 40.0% | |
| TTTGCTTTGTCCTGAAGAAC+CGG | - | chr5_1:9782092-9782111 | None:intergenic | 40.0% | |
| TATGCACGTTCATATGTGGT+GGG | - | chr5_1:9782162-9782181 | None:intergenic | 40.0% | |
| !! | TAACAAGTTGGCCTTGAGAA+AGG | - | chr5_1:9782429-9782448 | None:intergenic | 40.0% |
| !! | AGGGTAATGGAGTTTCACTT+GGG | - | chr5_1:9782483-9782502 | None:intergenic | 40.0% |
| ! | GGACATTGATTAGAGGGTAA+TGG | - | chr5_1:9782496-9782515 | None:intergenic | 40.0% |
| ! | GGTGTAGGACATTGATTAGA+GGG | - | chr5_1:9782502-9782521 | None:intergenic | 40.0% |
| ! | TGGTGTAGGACATTGATTAG+AGG | - | chr5_1:9782503-9782522 | None:intergenic | 40.0% |
| TAATGAAAGAGACATGCACG+TGG | - | chr5_1:9782523-9782542 | None:intergenic | 40.0% | |
| TTTGGGTGTATTCACAAGCT+GGG | - | chr5_1:9781291-9781310 | None:intergenic | 40.0% | |
| ATTTGGGTGTATTCACAAGC+TGG | - | chr5_1:9781292-9781311 | None:intergenic | 40.0% | |
| TTTAGGGGAGAAGAAGCTAA+AGG | + | chr5_1:9781409-9781428 | Msa0716310:intron | 40.0% | |
| CGTAGTAAGAAGAACAAAGG+TGG | + | chr5_1:9781443-9781462 | Msa0716310:CDS | 40.0% | |
| GAAGAAGGATAGACTTGCAA+TGG | + | chr5_1:9781571-9781590 | Msa0716310:CDS | 40.0% | |
| AACCAAACTGCAACTTGTCT+GGG | - | chr5_1:9781611-9781630 | None:intergenic | 40.0% | |
| ! | AGTTTGGTTCCAGAATCGAA+GGG | + | chr5_1:9781622-9781641 | Msa0716310:CDS | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_1:9781730-9781749 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_1:9781952-9781971 | Msa0716310:intron | 40.0% | |
| TTTGCTTTGTCCTGAAGAAC+CGG | - | chr5_1:9782092-9782111 | None:intergenic | 40.0% | |
| TATGCACGTTCATATGTGGT+GGG | - | chr5_1:9782162-9782181 | None:intergenic | 40.0% | |
| !! | TAACAAGTTGGCCTTGAGAA+AGG | - | chr5_1:9782429-9782448 | None:intergenic | 40.0% |
| !! | AGGGTAATGGAGTTTCACTT+GGG | - | chr5_1:9782483-9782502 | None:intergenic | 40.0% |
| ! | GGACATTGATTAGAGGGTAA+TGG | - | chr5_1:9782496-9782515 | None:intergenic | 40.0% |
| ! | GGTGTAGGACATTGATTAGA+GGG | - | chr5_1:9782502-9782521 | None:intergenic | 40.0% |
| ! | TGGTGTAGGACATTGATTAG+AGG | - | chr5_1:9782503-9782522 | None:intergenic | 40.0% |
| TAATGAAAGAGACATGCACG+TGG | - | chr5_1:9782523-9782542 | None:intergenic | 40.0% | |
| GATAGACTTGCAATGGAGCT+TGG | + | chr5_1:9781578-9781597 | Msa0716310:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTT+TGG | + | chr5_1:9781606-9781625 | Msa0716310:CDS | 45.0% | |
| GAACCAAACTGCAACTTGTC+TGG | - | chr5_1:9781612-9781631 | None:intergenic | 45.0% | |
| ! | CAGTTTGGTTCCAGAATCGA+AGG | + | chr5_1:9781621-9781640 | Msa0716310:CDS | 45.0% |
| AAGGAGACACTTCTCAAGCA+TGG | - | chr5_1:9781711-9781730 | None:intergenic | 45.0% | |
| ! | GAAGTGTCTCCTTGAAACCA+AGG | + | chr5_1:9781718-9781737 | Msa0716310:CDS | 45.0% |
| ! | AGGAAGCAAGAGGTATACCT+TGG | - | chr5_1:9781738-9781757 | None:intergenic | 45.0% |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_1:9781955-9781974 | Msa0716310:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_1:9781961-9781980 | None:intergenic | 45.0% | |
| !! | AATAAGCACTGGCATGCAAC+CGG | + | chr5_1:9782070-9782089 | Msa0716310:intron | 45.0% |
| CTATGCACGTTCATATGTGG+TGG | - | chr5_1:9782163-9782182 | None:intergenic | 45.0% | |
| CACCACATATGAACGTGCAT+AGG | + | chr5_1:9782161-9782180 | Msa0716310:intron | 45.0% | |
| CTCCTATGCACGTTCATATG+TGG | - | chr5_1:9782166-9782185 | None:intergenic | 45.0% | |
| !! | GAGGGTAATGGAGTTTCACT+TGG | - | chr5_1:9782484-9782503 | None:intergenic | 45.0% |
| !! | AGCTACTATTTGGCTCTCGA+AGG | - | chr5_1:9782686-9782705 | None:intergenic | 45.0% |
| TTGTGGGTCCACTATTTCCA+TGG | - | chr5_1:9782733-9782752 | None:intergenic | 45.0% | |
| GACATATTACTTCAACGGCC+AGG | + | chr5_1:9782815-9782834 | Msa0716310:CDS | 45.0% | |
| ATTACTTCAACGGCCAGGAA+TGG | + | chr5_1:9782820-9782839 | Msa0716310:CDS | 45.0% | |
| GATAGACTTGCAATGGAGCT+TGG | + | chr5_1:9781578-9781597 | Msa0716310:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTT+TGG | + | chr5_1:9781606-9781625 | Msa0716310:CDS | 45.0% | |
| GAACCAAACTGCAACTTGTC+TGG | - | chr5_1:9781612-9781631 | None:intergenic | 45.0% | |
| ! | CAGTTTGGTTCCAGAATCGA+AGG | + | chr5_1:9781621-9781640 | Msa0716310:CDS | 45.0% |
| AAGGAGACACTTCTCAAGCA+TGG | - | chr5_1:9781711-9781730 | None:intergenic | 45.0% | |
| ! | GAAGTGTCTCCTTGAAACCA+AGG | + | chr5_1:9781718-9781737 | Msa0716310:CDS | 45.0% |
| ! | AGGAAGCAAGAGGTATACCT+TGG | - | chr5_1:9781738-9781757 | None:intergenic | 45.0% |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_1:9781955-9781974 | Msa0716310:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_1:9781961-9781980 | None:intergenic | 45.0% | |
| !! | AATAAGCACTGGCATGCAAC+CGG | + | chr5_1:9782070-9782089 | Msa0716310:intron | 45.0% |
| CTATGCACGTTCATATGTGG+TGG | - | chr5_1:9782163-9782182 | None:intergenic | 45.0% | |
| CACCACATATGAACGTGCAT+AGG | + | chr5_1:9782161-9782180 | Msa0716310:intron | 45.0% | |
| CTCCTATGCACGTTCATATG+TGG | - | chr5_1:9782166-9782185 | None:intergenic | 45.0% | |
| !! | GAGGGTAATGGAGTTTCACT+TGG | - | chr5_1:9782484-9782503 | None:intergenic | 45.0% |
| !! | AGCTACTATTTGGCTCTCGA+AGG | - | chr5_1:9782686-9782705 | None:intergenic | 45.0% |
| TTGTGGGTCCACTATTTCCA+TGG | - | chr5_1:9782733-9782752 | None:intergenic | 45.0% | |
| GACATATTACTTCAACGGCC+AGG | + | chr5_1:9782815-9782834 | Msa0716310:CDS | 45.0% | |
| ATTACTTCAACGGCCAGGAA+TGG | + | chr5_1:9782820-9782839 | Msa0716310:CDS | 45.0% | |
| GAGACACTTCTCAAGCATGG+TGG | - | chr5_1:9781708-9781727 | None:intergenic | 50.0% | |
| ATGAACGTGCATAGGAGCTC+TGG | + | chr5_1:9782169-9782188 | Msa0716310:intron | 50.0% | |
| TGAACGTGCATAGGAGCTCT+GGG | + | chr5_1:9782170-9782189 | Msa0716310:intron | 50.0% | |
| AAGAGACATGCACGTGGTGT+AGG | - | chr5_1:9782517-9782536 | None:intergenic | 50.0% | |
| GCTAACAGAGCAGCTTTCTG+AGG | + | chr5_1:9782641-9782660 | Msa0716310:CDS | 50.0% | |
| GAGACACTTCTCAAGCATGG+TGG | - | chr5_1:9781708-9781727 | None:intergenic | 50.0% | |
| ATGAACGTGCATAGGAGCTC+TGG | + | chr5_1:9782169-9782188 | Msa0716310:intron | 50.0% | |
| TGAACGTGCATAGGAGCTCT+GGG | + | chr5_1:9782170-9782189 | Msa0716310:intron | 50.0% | |
| AAGAGACATGCACGTGGTGT+AGG | - | chr5_1:9782517-9782536 | None:intergenic | 50.0% | |
| GCTAACAGAGCAGCTTTCTG+AGG | + | chr5_1:9782641-9782660 | Msa0716310:CDS | 50.0% | |
| GGTTCCAGAATCGAAGGGCT+AGG | + | chr5_1:9781627-9781646 | Msa0716310:CDS | 55.0% | |
| TCCAGAATCGAAGGGCTAGG+TGG | + | chr5_1:9781630-9781649 | Msa0716310:CDS | 55.0% | |
| TCCACCTAGCCCTTCGATTC+TGG | - | chr5_1:9781634-9781653 | None:intergenic | 55.0% | |
| ! | TGGCATGCAACCGGTTCTTC+AGG | + | chr5_1:9782079-9782098 | Msa0716310:intron | 55.0% |
| !! | GCAGCTTTCTGAGGCAGAGA+AGG | + | chr5_1:9782650-9782669 | Msa0716310:CDS | 55.0% |
| GGTTCCAGAATCGAAGGGCT+AGG | + | chr5_1:9781627-9781646 | Msa0716310:CDS | 55.0% | |
| TCCAGAATCGAAGGGCTAGG+TGG | + | chr5_1:9781630-9781649 | Msa0716310:CDS | 55.0% | |
| TCCACCTAGCCCTTCGATTC+TGG | - | chr5_1:9781634-9781653 | None:intergenic | 55.0% | |
| ! | TGGCATGCAACCGGTTCTTC+AGG | + | chr5_1:9782079-9782098 | Msa0716310:intron | 55.0% |
| !! | GCAGCTTTCTGAGGCAGAGA+AGG | + | chr5_1:9782650-9782669 | Msa0716310:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 9781172 | 9782968 | 9781172 | ID=Msa0716310;Name=Msa0716310 |
| chr5_1 | mRNA | 9781172 | 9782968 | 9781172 | ID=Msa0716310-mRNA-1;Parent=Msa0716310;Name=Msa0716310-mRNA-1;_AED=0.02;_eAED=0.02;_QI=75|1|1|1|1|1|3|108|210 |
| chr5_1 | exon | 9781172 | 9781325 | 9781172 | ID=Msa0716310-mRNA-1:exon:3873;Parent=Msa0716310-mRNA-1 |
| chr5_1 | exon | 9781414 | 9781739 | 9781414 | ID=Msa0716310-mRNA-1:exon:3874;Parent=Msa0716310-mRNA-1 |
| chr5_1 | exon | 9782633 | 9782968 | 9782633 | ID=Msa0716310-mRNA-1:exon:3875;Parent=Msa0716310-mRNA-1 |
| chr5_1 | five_prime_UTR | 9781172 | 9781246 | 9781172 | ID=Msa0716310-mRNA-1:five_prime_utr;Parent=Msa0716310-mRNA-1 |
| chr5_1 | CDS | 9781247 | 9781325 | 9781247 | ID=Msa0716310-mRNA-1:cds;Parent=Msa0716310-mRNA-1 |
| chr5_1 | CDS | 9781414 | 9781739 | 9781414 | ID=Msa0716310-mRNA-1:cds;Parent=Msa0716310-mRNA-1 |
| chr5_1 | CDS | 9782633 | 9782860 | 9782633 | ID=Msa0716310-mRNA-1:cds;Parent=Msa0716310-mRNA-1 |
| chr5_1 | three_prime_UTR | 9782861 | 9782968 | 9782861 | ID=Msa0716310-mRNA-1:three_prime_utr;Parent=Msa0716310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
