Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798910 | XP_003611950.1 | 93.269 | 208 | 13 | 1 | 1 | 208 | 1 | 207 | 8.85e-131 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798910 | sp|O23208|ATB40_ARATH | 52.607 | 211 | 89 | 8 | 7 | 210 | 10 | 216 | 5.56e-56 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798910 | G7KC76 | 93.269 | 208 | 13 | 1 | 1 | 208 | 1 | 207 | 4.23e-131 | 376 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0798910 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0645530 | Msa0798910 | 0.807609 | 4.649271e-50 | -8.615850e-47 |
| Msa0657120 | Msa0798910 | 0.801664 | 8.092863e-49 | -8.615850e-47 |
| Msa0685090 | Msa0798910 | 0.807593 | 4.685919e-50 | -8.615850e-47 |
| Msa0716310 | Msa0798910 | 0.826338 | 2.865207e-54 | -8.615850e-47 |
| Msa0757610 | Msa0798910 | 0.901333 | 2.979545e-78 | -8.615850e-47 |
| Msa0798910 | Msa0985180 | 0.815005 | 1.153837e-51 | -8.615850e-47 |
| Msa0798910 | Msa1327640 | 0.805044 | 1.613817e-49 | -8.615850e-47 |
| Msa0798910 | Msa1415010 | 0.896283 | 4.281304e-76 | -8.615850e-47 |
| Msa0127870 | Msa0798910 | 0.801097 | 1.057125e-48 | -8.615850e-47 |
| Msa0174010 | Msa0798910 | 0.800822 | 1.203181e-48 | -8.615850e-47 |
| Msa0230610 | Msa0798910 | 0.803215 | 3.877487e-49 | -8.615850e-47 |
| Msa0390550 | Msa0798910 | 0.802930 | 4.441478e-49 | -8.615850e-47 |
| Msa0317960 | Msa0798910 | 0.801135 | 1.038526e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798910 | MtrunA17_Chr5g0403701 | 93.269 | 208 | 13 | 1 | 1 | 208 | 1 | 207 | 8.14e-135 | 376 |
| Msa0798910 | MtrunA17_Chr5g0403691 | 81.982 | 222 | 27 | 3 | 1 | 210 | 1 | 221 | 1.57e-118 | 335 |
| Msa0798910 | MtrunA17_Chr4g0060031 | 38.776 | 147 | 73 | 3 | 31 | 160 | 62 | 208 | 8.25e-23 | 94.0 |
| Msa0798910 | MtrunA17_Chr3g0123691 | 60.811 | 74 | 29 | 0 | 54 | 127 | 60 | 133 | 4.41e-22 | 91.7 |
| Msa0798910 | MtrunA17_Chr6g0450991 | 47.273 | 110 | 49 | 2 | 54 | 156 | 67 | 174 | 7.58e-22 | 90.5 |
| Msa0798910 | MtrunA17_Chr8g0381741 | 56.250 | 80 | 35 | 0 | 45 | 124 | 45 | 124 | 7.85e-22 | 90.9 |
| Msa0798910 | MtrunA17_Chr6g0453021 | 50.505 | 99 | 49 | 0 | 45 | 143 | 87 | 185 | 1.17e-20 | 87.0 |
| Msa0798910 | MtrunA17_Chr5g0415941 | 60.563 | 71 | 28 | 0 | 54 | 124 | 87 | 157 | 2.48e-20 | 87.0 |
| Msa0798910 | MtrunA17_Chr8g0362151 | 44.898 | 98 | 54 | 0 | 46 | 143 | 69 | 166 | 3.74e-20 | 85.9 |
| Msa0798910 | MtrunA17_Chr5g0416391 | 44.737 | 114 | 58 | 1 | 46 | 159 | 69 | 177 | 5.66e-20 | 85.5 |
| Msa0798910 | MtrunA17_Chr3g0127511 | 47.959 | 98 | 44 | 1 | 56 | 153 | 40 | 130 | 7.82e-20 | 84.3 |
| Msa0798910 | MtrunA17_Chr8g0362751 | 58.571 | 70 | 29 | 0 | 54 | 123 | 89 | 158 | 9.26e-20 | 85.1 |
| Msa0798910 | MtrunA17_Chr7g0265521 | 45.918 | 98 | 53 | 0 | 48 | 145 | 57 | 154 | 4.76e-19 | 82.0 |
| Msa0798910 | MtrunA17_Chr1g0179581 | 51.250 | 80 | 39 | 0 | 54 | 133 | 28 | 107 | 6.19e-19 | 78.6 |
| Msa0798910 | MtrunA17_Chr3g0119291 | 44.660 | 103 | 57 | 0 | 51 | 153 | 56 | 158 | 8.83e-19 | 81.6 |
| Msa0798910 | MtrunA17_Chr8g0346251 | 44.248 | 113 | 63 | 0 | 58 | 170 | 45 | 157 | 2.04e-17 | 77.8 |
| Msa0798910 | MtrunA17_Chr7g0217111 | 47.778 | 90 | 47 | 0 | 54 | 143 | 80 | 169 | 8.97e-16 | 73.9 |
| Msa0798910 | MtrunA17_Chr4g0044091 | 43.564 | 101 | 43 | 1 | 54 | 154 | 65 | 151 | 1.09e-13 | 67.0 |
| Msa0798910 | MtrunA17_Chr4g0055851 | 43.564 | 101 | 43 | 1 | 54 | 154 | 120 | 206 | 1.74e-13 | 67.8 |
| Msa0798910 | MtrunA17_Chr8g0335131 | 45.263 | 95 | 47 | 1 | 54 | 143 | 146 | 240 | 5.96e-13 | 66.2 |
| Msa0798910 | MtrunA17_Chr1g0175651 | 38.938 | 113 | 55 | 1 | 42 | 154 | 142 | 240 | 1.02e-12 | 65.5 |
| Msa0798910 | MtrunA17_Chr2g0308611 | 38.017 | 121 | 61 | 1 | 34 | 154 | 180 | 286 | 1.30e-12 | 65.5 |
| Msa0798910 | MtrunA17_Chr4g0054421 | 45.263 | 95 | 47 | 1 | 54 | 143 | 127 | 221 | 1.37e-12 | 65.1 |
| Msa0798910 | MtrunA17_Chr1g0151971 | 42.574 | 101 | 44 | 1 | 54 | 154 | 130 | 216 | 1.47e-12 | 65.1 |
| Msa0798910 | MtrunA17_Chr7g0258831 | 40.566 | 106 | 49 | 1 | 49 | 154 | 155 | 246 | 7.75e-12 | 63.2 |
| Msa0798910 | MtrunA17_Chr5g0400781 | 45.263 | 95 | 47 | 1 | 54 | 143 | 123 | 217 | 1.24e-11 | 62.4 |
| Msa0798910 | MtrunA17_Chr5g0399491 | 43.158 | 95 | 49 | 1 | 54 | 143 | 136 | 230 | 4.84e-11 | 60.8 |
| Msa0798910 | MtrunA17_Chr3g0135331 | 43.836 | 73 | 41 | 0 | 52 | 124 | 143 | 215 | 4.95e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798910 | AT4G36740.2 | 52.133 | 211 | 91 | 7 | 7 | 210 | 10 | 217 | 1.36e-57 | 181 |
| Msa0798910 | AT4G36740.1 | 52.607 | 211 | 89 | 8 | 7 | 210 | 10 | 216 | 5.66e-57 | 179 |
| Msa0798910 | AT2G18550.1 | 45.575 | 226 | 101 | 9 | 1 | 210 | 1 | 220 | 6.75e-57 | 179 |
| Msa0798910 | AT5G66700.1 | 46.818 | 220 | 103 | 4 | 5 | 210 | 9 | 228 | 1.03e-47 | 156 |
| Msa0798910 | AT3G01470.1 | 33.333 | 207 | 108 | 5 | 2 | 178 | 13 | 219 | 3.73e-24 | 96.7 |
| Msa0798910 | AT1G69780.1 | 38.961 | 154 | 80 | 3 | 2 | 143 | 23 | 174 | 1.81e-23 | 95.5 |
| Msa0798910 | AT2G22430.1 | 64.789 | 71 | 25 | 0 | 54 | 124 | 62 | 132 | 6.97e-22 | 91.7 |
| Msa0798910 | AT4G40060.1 | 63.380 | 71 | 26 | 0 | 54 | 124 | 59 | 129 | 7.69e-22 | 90.9 |
| Msa0798910 | AT5G65310.2 | 57.143 | 77 | 33 | 0 | 43 | 119 | 43 | 119 | 3.02e-21 | 89.4 |
| Msa0798910 | AT5G65310.1 | 57.143 | 77 | 33 | 0 | 43 | 119 | 61 | 137 | 3.49e-21 | 89.7 |
| Msa0798910 | AT1G26960.1 | 41.912 | 136 | 74 | 1 | 54 | 184 | 71 | 206 | 5.36e-21 | 88.2 |
| Msa0798910 | AT5G53980.1 | 36.552 | 145 | 90 | 1 | 45 | 187 | 2 | 146 | 1.33e-20 | 84.7 |
| Msa0798910 | AT2G46680.2 | 48.000 | 100 | 51 | 1 | 48 | 146 | 26 | 125 | 5.44e-20 | 85.5 |
| Msa0798910 | AT5G03790.1 | 39.683 | 126 | 75 | 1 | 14 | 139 | 38 | 162 | 6.11e-20 | 84.7 |
| Msa0798910 | AT2G46680.1 | 45.370 | 108 | 52 | 1 | 48 | 155 | 26 | 126 | 7.51e-20 | 85.1 |
| Msa0798910 | AT5G03790.2 | 40.496 | 121 | 71 | 1 | 19 | 139 | 43 | 162 | 1.10e-19 | 83.2 |
| Msa0798910 | AT2G36610.1 | 45.370 | 108 | 51 | 2 | 46 | 145 | 63 | 170 | 4.91e-19 | 81.3 |
| Msa0798910 | AT3G01220.1 | 51.852 | 81 | 38 | 1 | 45 | 124 | 77 | 157 | 4.82e-18 | 80.5 |
| Msa0798910 | AT3G61890.1 | 44.444 | 99 | 55 | 0 | 57 | 155 | 33 | 131 | 4.94e-18 | 79.7 |
| Msa0798910 | AT5G15150.1 | 58.209 | 67 | 28 | 0 | 54 | 120 | 115 | 181 | 8.09e-18 | 80.5 |
| Msa0798910 | AT1G27045.2 | 40.152 | 132 | 66 | 1 | 52 | 170 | 15 | 146 | 2.19e-17 | 76.6 |
| Msa0798910 | AT1G27045.5 | 40.152 | 132 | 66 | 1 | 52 | 170 | 23 | 154 | 2.41e-17 | 76.6 |
| Msa0798910 | AT1G27045.3 | 40.152 | 132 | 66 | 1 | 52 | 170 | 23 | 154 | 2.41e-17 | 76.6 |
| Msa0798910 | AT1G27045.1 | 42.149 | 121 | 57 | 1 | 52 | 159 | 66 | 186 | 3.17e-17 | 77.4 |
| Msa0798910 | AT1G27045.4 | 55.882 | 68 | 30 | 0 | 52 | 119 | 66 | 133 | 3.12e-16 | 75.1 |
| Msa0798910 | AT2G22800.1 | 45.161 | 93 | 46 | 1 | 54 | 141 | 113 | 205 | 1.43e-12 | 65.5 |
| Msa0798910 | AT4G16780.1 | 41.905 | 105 | 51 | 2 | 44 | 143 | 124 | 223 | 3.03e-12 | 64.7 |
| Msa0798910 | AT2G01430.1 | 37.607 | 117 | 55 | 2 | 54 | 166 | 139 | 241 | 4.14e-12 | 63.9 |
| Msa0798910 | AT5G47370.1 | 35.659 | 129 | 78 | 1 | 20 | 143 | 96 | 224 | 1.03e-11 | 63.2 |
| Msa0798910 | AT4G17460.1 | 40.385 | 104 | 57 | 1 | 45 | 143 | 126 | 229 | 1.56e-11 | 62.4 |
| Msa0798910 | AT4G37790.1 | 44.086 | 93 | 47 | 1 | 54 | 141 | 126 | 218 | 1.58e-11 | 62.4 |
| Msa0798910 | AT5G06710.1 | 36.667 | 120 | 62 | 1 | 35 | 154 | 171 | 276 | 3.69e-11 | 61.6 |
Find 44 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGTTGAGAAATTATT+TGG | 0.079303 | 5_3:-11958628 | None:intergenic |
| TCCACCTAGCCCTTCGATTC+TGG | 0.220585 | 5_3:-11958953 | None:intergenic |
| TGATGAACAAATGAAAATTT+TGG | 0.274227 | 5_3:+11958833 | Msa0798910:CDS |
| GAACCAAACTGCAACTTGTC+TGG | 0.307826 | 5_3:-11958931 | None:intergenic |
| AACAATTAATTTACATATTG+AGG | 0.325320 | 5_3:-11960267 | None:intergenic |
| GAAGTACTAGAGCTACTATT+TGG | 0.364392 | 5_3:-11960039 | None:intergenic |
| TCTTGCTTTCCTAAAAGATT+AGG | 0.374509 | 5_3:-11958483 | None:intergenic |
| ATCCCAGACAAGTTGCAGTT+TGG | 0.404850 | 5_3:+11958928 | Msa0798910:CDS |
| TATGTAAATTAATTGTTCAT+AGG | 0.406700 | 5_3:+11960273 | Msa0798910:three_prime_UTR |
| TTCTTACTACGCTTGCGTCT+TGG | 0.426044 | 5_3:-11958753 | None:intergenic |
| TATAAAGATTAATCCATTCC+TGG | 0.431532 | 5_3:-11960179 | None:intergenic |
| ACCTTGTTGAGAAATTATTT+GGG | 0.435398 | 5_3:-11958627 | None:intergenic |
| AGAGGTATACCTTGGTTTCA+AGG | 0.440743 | 5_3:-11959049 | None:intergenic |
| TTCATCAATTTCACAATCCA+TGG | 0.447091 | 5_3:+11960059 | Msa0798910:CDS |
| ACAATTAATTTACATATTGA+GGG | 0.456007 | 5_3:-11960266 | None:intergenic |
| ATTTGGGTGTATTCACAAGC+TGG | 0.458844 | 5_3:-11958611 | None:intergenic |
| ACTGAGACATAAGCATCATT+TGG | 0.463969 | 5_3:-11958583 | None:intergenic |
| TCAAATTCATCAAGTAATTG+TGG | 0.464011 | 5_3:-11960093 | None:intergenic |
| GATAGACTTGCAATGGAGCT+TGG | 0.475779 | 5_3:+11958900 | Msa0798910:CDS |
| AAGGAGACACTTCTCAAGAA+TGG | 0.492858 | 5_3:-11959030 | None:intergenic |
| TTGTGGGTCCACTACTTCCA+TGG | 0.493534 | 5_3:-11960076 | None:intergenic |
| CAAATTCATCAAGTAATTGT+GGG | 0.494706 | 5_3:-11960092 | None:intergenic |
| TAAACTTGAGTCAGAGAAGA+AGG | 0.499532 | 5_3:+11958878 | Msa0798910:CDS |
| AACCAAACTGCAACTTGTCT+GGG | 0.501567 | 5_3:-11958930 | None:intergenic |
| CAGTTTGGTTCCAGAATCGA+AGG | 0.504708 | 5_3:+11958943 | Msa0798910:CDS |
| TTTGGGTGTATTCACAAGCT+GGG | 0.519334 | 5_3:-11958610 | None:intergenic |
| GGTTCCAGAATCGAAGGGCT+AGG | 0.526167 | 5_3:+11958949 | Msa0798910:CDS |
| AGCATTTGTAGATAATGTAA+AGG | 0.526757 | 5_3:+11960239 | Msa0798910:three_prime_UTR |
| ATTACTTCAACGGCCAGGAA+TGG | 0.529342 | 5_3:+11960166 | Msa0798910:CDS |
| TTGAAGTAATATGTCGCATC+CGG | 0.533058 | 5_3:-11960153 | None:intergenic |
| GCAGCTTTCTGAGGCAGAGA+AGG | 0.540038 | 5_3:+11959996 | Msa0798910:CDS |
| GAAGAAGGATAGACTTGCAA+TGG | 0.545678 | 5_3:+11958893 | Msa0798910:CDS |
| TTCACAATCCATGGAAGTAG+TGG | 0.547965 | 5_3:+11960068 | Msa0798910:CDS |
| AGCTACTATTTGGCTCTCGA+AGG | 0.571565 | 5_3:-11960029 | None:intergenic |
| GATGCGACATATTACTTCAA+CGG | 0.573154 | 5_3:+11960156 | Msa0798910:CDS |
| GCTAACAGAGCAGCTTTCTG+AGG | 0.593252 | 5_3:+11959987 | Msa0798910:CDS |
| CGTAGTAAGAAGAACAAAGG+TGG | 0.606299 | 5_3:+11958765 | Msa0798910:CDS |
| GAGACACTTCTCAAGAATGG+TGG | 0.632257 | 5_3:-11959027 | None:intergenic |
| GAAGTGTCTCCTTGAAACCA+AGG | 0.638232 | 5_3:+11959040 | Msa0798910:CDS |
| GACATATTACTTCAACGGCC+AGG | 0.639581 | 5_3:+11960161 | Msa0798910:CDS |
| ACCCAAATAATTTCTCAACA+AGG | 0.645027 | 5_3:+11958626 | Msa0798910:CDS |
| TCCAGAATCGAAGGGCTAGG+TGG | 0.655135 | 5_3:+11958952 | Msa0798910:CDS |
| AAGCGTAGTAAGAAGAACAA+AGG | 0.668285 | 5_3:+11958762 | Msa0798910:CDS |
| AGTTTGGTTCCAGAATCGAA+GGG | 0.690392 | 5_3:+11958944 | Msa0798910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTGTTATGTTTTTTT+AGG | + | chr5_3:11958714-11958733 | Msa0798910:intron | 10.0% |
| !!! | ATTTTTGTTATGTTTTTTTA+GGG | + | chr5_3:11958715-11958734 | Msa0798910:intron | 10.0% |
| !! | TTATTAAAAATTAAAATCAG+TGG | + | chr5_3:11959153-11959172 | Msa0798910:intron | 10.0% |
| !! | AATATATAAAAACAAAAACA+AGG | + | chr5_3:11959661-11959680 | Msa0798910:intron | 10.0% |
| !! | AAATATTAATTGAACATATA+AGG | - | chr5_3:11959954-11959973 | None:intergenic | 10.0% |
| !!! | TATTTTTGTTATGTTTTTTT+AGG | + | chr5_3:11958714-11958733 | Msa0798910:intron | 10.0% |
| !!! | ATTTTTGTTATGTTTTTTTA+GGG | + | chr5_3:11958715-11958734 | Msa0798910:intron | 10.0% |
| !! | TTATTAAAAATTAAAATCAG+TGG | + | chr5_3:11959153-11959172 | Msa0798910:intron | 10.0% |
| !! | AATATATAAAAACAAAAACA+AGG | + | chr5_3:11959661-11959680 | Msa0798910:intron | 10.0% |
| !! | AAATATTAATTGAACATATA+AGG | - | chr5_3:11959954-11959973 | None:intergenic | 10.0% |
| !!! | TTTTTGTTATGTTTTTTTAG+GGG | + | chr5_3:11958716-11958735 | Msa0798910:intron | 15.0% |
| !!! | AAAATTTTGGAAGAAAATTT+TGG | + | chr5_3:11958846-11958865 | Msa0798910:CDS | 15.0% |
| !!! | TTTATCATTTTTCATTTAAG+GGG | - | chr5_3:11959475-11959494 | None:intergenic | 15.0% |
| !!! | CTTTATCATTTTTCATTTAA+GGG | - | chr5_3:11959476-11959495 | None:intergenic | 15.0% |
| !!! | ACTTTATCATTTTTCATTTA+AGG | - | chr5_3:11959477-11959496 | None:intergenic | 15.0% |
| !! | AAAATGAAGAAAATATTGTA+CGG | - | chr5_3:11959753-11959772 | None:intergenic | 15.0% |
| !! | ACAATTAATTTACATATTGA+GGG | - | chr5_3:11960269-11960288 | None:intergenic | 15.0% |
| !! | AACAATTAATTTACATATTG+AGG | - | chr5_3:11960270-11960289 | None:intergenic | 15.0% |
| !! | TATGTAAATTAATTGTTCAT+AGG | + | chr5_3:11960273-11960292 | Msa0798910:three_prime_UTR | 15.0% |
| !!! | TTTTTGTTATGTTTTTTTAG+GGG | + | chr5_3:11958716-11958735 | Msa0798910:intron | 15.0% |
| !!! | AAAATTTTGGAAGAAAATTT+TGG | + | chr5_3:11958846-11958865 | Msa0798910:CDS | 15.0% |
| !!! | TTTATCATTTTTCATTTAAG+GGG | - | chr5_3:11959475-11959494 | None:intergenic | 15.0% |
| !!! | CTTTATCATTTTTCATTTAA+GGG | - | chr5_3:11959476-11959495 | None:intergenic | 15.0% |
| !!! | ACTTTATCATTTTTCATTTA+AGG | - | chr5_3:11959477-11959496 | None:intergenic | 15.0% |
| !! | AAAATGAAGAAAATATTGTA+CGG | - | chr5_3:11959753-11959772 | None:intergenic | 15.0% |
| !! | ACAATTAATTTACATATTGA+GGG | - | chr5_3:11960269-11960288 | None:intergenic | 15.0% |
| !! | AACAATTAATTTACATATTG+AGG | - | chr5_3:11960270-11960289 | None:intergenic | 15.0% |
| !! | TATGTAAATTAATTGTTCAT+AGG | + | chr5_3:11960273-11960292 | Msa0798910:three_prime_UTR | 15.0% |
| !!! | TGATGAACAAATGAAAATTT+TGG | + | chr5_3:11958833-11958852 | Msa0798910:CDS | 20.0% |
| !! | CACTAGTAATATAATATTGT+TGG | - | chr5_3:11959228-11959247 | None:intergenic | 20.0% |
| !!! | GTACAATATTTTCTTCATTT+TGG | + | chr5_3:11959752-11959771 | Msa0798910:intron | 20.0% |
| !! | TCTAAGCAAAGATTATTAAA+AGG | - | chr5_3:11959902-11959921 | None:intergenic | 20.0% |
| !! | ATTGAACATATAAGGTAATT+AGG | - | chr5_3:11959946-11959965 | None:intergenic | 20.0% |
| !!! | TGATGAACAAATGAAAATTT+TGG | + | chr5_3:11958833-11958852 | Msa0798910:CDS | 20.0% |
| !! | CACTAGTAATATAATATTGT+TGG | - | chr5_3:11959228-11959247 | None:intergenic | 20.0% |
| !!! | GTACAATATTTTCTTCATTT+TGG | + | chr5_3:11959752-11959771 | Msa0798910:intron | 20.0% |
| !! | TCTAAGCAAAGATTATTAAA+AGG | - | chr5_3:11959902-11959921 | None:intergenic | 20.0% |
| !! | ATTGAACATATAAGGTAATT+AGG | - | chr5_3:11959946-11959965 | None:intergenic | 20.0% |
| ! | ACCTTGTTGAGAAATTATTT+GGG | - | chr5_3:11958630-11958649 | None:intergenic | 25.0% |
| ! | AACCTTGTTGAGAAATTATT+TGG | - | chr5_3:11958631-11958650 | None:intergenic | 25.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | + | chr5_3:11958802-11958821 | Msa0798910:CDS | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | - | chr5_3:11958806-11958825 | None:intergenic | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+GGG | - | chr5_3:11959402-11959421 | None:intergenic | 25.0% |
| ! | TATTCTCTCTTTCAACATTT+AGG | - | chr5_3:11959403-11959422 | None:intergenic | 25.0% |
| ! | GAGAACTTTAATAATGTGAA+CGG | - | chr5_3:11959565-11959584 | None:intergenic | 25.0% |
| ! | AGAAAATATTGTACGGAATT+AGG | - | chr5_3:11959746-11959765 | None:intergenic | 25.0% |
| ! | CAAATTCATCAAGTAATTGT+GGG | - | chr5_3:11960095-11960114 | None:intergenic | 25.0% |
| ! | TCAAATTCATCAAGTAATTG+TGG | - | chr5_3:11960096-11960115 | None:intergenic | 25.0% |
| ! | TATAAAGATTAATCCATTCC+TGG | - | chr5_3:11960182-11960201 | None:intergenic | 25.0% |
| ! | AGCATTTGTAGATAATGTAA+AGG | + | chr5_3:11960239-11960258 | Msa0798910:three_prime_UTR | 25.0% |
| ! | ACCTTGTTGAGAAATTATTT+GGG | - | chr5_3:11958630-11958649 | None:intergenic | 25.0% |
| ! | AACCTTGTTGAGAAATTATT+TGG | - | chr5_3:11958631-11958650 | None:intergenic | 25.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | + | chr5_3:11958802-11958821 | Msa0798910:CDS | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | - | chr5_3:11958806-11958825 | None:intergenic | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+GGG | - | chr5_3:11959402-11959421 | None:intergenic | 25.0% |
| ! | TATTCTCTCTTTCAACATTT+AGG | - | chr5_3:11959403-11959422 | None:intergenic | 25.0% |
| ! | GAGAACTTTAATAATGTGAA+CGG | - | chr5_3:11959565-11959584 | None:intergenic | 25.0% |
| ! | AGAAAATATTGTACGGAATT+AGG | - | chr5_3:11959746-11959765 | None:intergenic | 25.0% |
| ! | CAAATTCATCAAGTAATTGT+GGG | - | chr5_3:11960095-11960114 | None:intergenic | 25.0% |
| ! | TCAAATTCATCAAGTAATTG+TGG | - | chr5_3:11960096-11960115 | None:intergenic | 25.0% |
| ! | TATAAAGATTAATCCATTCC+TGG | - | chr5_3:11960182-11960201 | None:intergenic | 25.0% |
| ! | AGCATTTGTAGATAATGTAA+AGG | + | chr5_3:11960239-11960258 | Msa0798910:three_prime_UTR | 25.0% |
| TCTTGCTTTCCTAAAAGATT+AGG | - | chr5_3:11958486-11958505 | None:intergenic | 30.0% | |
| ACCCAAATAATTTCTCAACA+AGG | + | chr5_3:11958626-11958645 | Msa0798910:CDS | 30.0% | |
| AAATAAGAAGATGAAGCAAG+AGG | - | chr5_3:11959070-11959089 | None:intergenic | 30.0% | |
| ATTGTTGGAGAAATGATGAT+TGG | - | chr5_3:11959213-11959232 | None:intergenic | 30.0% | |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_3:11959272-11959291 | Msa0798910:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_3:11959273-11959292 | Msa0798910:intron | 30.0% | |
| TTCTCTCTTTCAACATTTAG+GGG | - | chr5_3:11959401-11959420 | None:intergenic | 30.0% | |
| ACATAACATGAATGATCATG+TGG | - | chr5_3:11959597-11959616 | None:intergenic | 30.0% | |
| !! | AGTGTTGTTTGTTGTCTTTA+AGG | - | chr5_3:11959705-11959724 | None:intergenic | 30.0% |
| TCTACTTCATGATAACAAGT+TGG | - | chr5_3:11959791-11959810 | None:intergenic | 30.0% | |
| TTCATCAATTTCACAATCCA+TGG | + | chr5_3:11960059-11960078 | Msa0798910:CDS | 30.0% | |
| TCTTGCTTTCCTAAAAGATT+AGG | - | chr5_3:11958486-11958505 | None:intergenic | 30.0% | |
| ACCCAAATAATTTCTCAACA+AGG | + | chr5_3:11958626-11958645 | Msa0798910:CDS | 30.0% | |
| AAATAAGAAGATGAAGCAAG+AGG | - | chr5_3:11959070-11959089 | None:intergenic | 30.0% | |
| ATTGTTGGAGAAATGATGAT+TGG | - | chr5_3:11959213-11959232 | None:intergenic | 30.0% | |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_3:11959272-11959291 | Msa0798910:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_3:11959273-11959292 | Msa0798910:intron | 30.0% | |
| TTCTCTCTTTCAACATTTAG+GGG | - | chr5_3:11959401-11959420 | None:intergenic | 30.0% | |
| ACATAACATGAATGATCATG+TGG | - | chr5_3:11959597-11959616 | None:intergenic | 30.0% | |
| !! | AGTGTTGTTTGTTGTCTTTA+AGG | - | chr5_3:11959705-11959724 | None:intergenic | 30.0% |
| TCTACTTCATGATAACAAGT+TGG | - | chr5_3:11959791-11959810 | None:intergenic | 30.0% | |
| TTCATCAATTTCACAATCCA+TGG | + | chr5_3:11960059-11960078 | Msa0798910:CDS | 30.0% | |
| ACTGAGACATAAGCATCATT+TGG | - | chr5_3:11958586-11958605 | None:intergenic | 35.0% | |
| AAGCGTAGTAAGAAGAACAA+AGG | + | chr5_3:11958762-11958781 | Msa0798910:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_3:11958878-11958897 | Msa0798910:CDS | 35.0% | |
| TTGAAAGAGAGAATAAGCAC+TGG | + | chr5_3:11959408-11959427 | Msa0798910:intron | 35.0% | |
| CTTTAATAATGTGAACGGCT+TGG | - | chr5_3:11959560-11959579 | None:intergenic | 35.0% | |
| ! | TTCATTTTGGACCTTTCTCA+AGG | + | chr5_3:11959765-11959784 | Msa0798910:intron | 35.0% |
| ! | ACATTGATTAGAGGGTAATG+GGG | - | chr5_3:11959844-11959863 | None:intergenic | 35.0% |
| ! | GACATTGATTAGAGGGTAAT+GGG | - | chr5_3:11959845-11959864 | None:intergenic | 35.0% |
| ! | GAAGTACTAGAGCTACTATT+TGG | - | chr5_3:11960042-11960061 | None:intergenic | 35.0% |
| !! | TGATGATGTGTTTTTCATGC+CGG | + | chr5_3:11960134-11960153 | Msa0798910:CDS | 35.0% |
| TTGAAGTAATATGTCGCATC+CGG | - | chr5_3:11960156-11960175 | None:intergenic | 35.0% | |
| GATGCGACATATTACTTCAA+CGG | + | chr5_3:11960156-11960175 | Msa0798910:CDS | 35.0% | |
| ACTGAGACATAAGCATCATT+TGG | - | chr5_3:11958586-11958605 | None:intergenic | 35.0% | |
| AAGCGTAGTAAGAAGAACAA+AGG | + | chr5_3:11958762-11958781 | Msa0798910:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_3:11958878-11958897 | Msa0798910:CDS | 35.0% | |
| TTGAAAGAGAGAATAAGCAC+TGG | + | chr5_3:11959408-11959427 | Msa0798910:intron | 35.0% | |
| CTTTAATAATGTGAACGGCT+TGG | - | chr5_3:11959560-11959579 | None:intergenic | 35.0% | |
| ! | TTCATTTTGGACCTTTCTCA+AGG | + | chr5_3:11959765-11959784 | Msa0798910:intron | 35.0% |
| ! | ACATTGATTAGAGGGTAATG+GGG | - | chr5_3:11959844-11959863 | None:intergenic | 35.0% |
| ! | GACATTGATTAGAGGGTAAT+GGG | - | chr5_3:11959845-11959864 | None:intergenic | 35.0% |
| ! | GAAGTACTAGAGCTACTATT+TGG | - | chr5_3:11960042-11960061 | None:intergenic | 35.0% |
| !! | TGATGATGTGTTTTTCATGC+CGG | + | chr5_3:11960134-11960153 | Msa0798910:CDS | 35.0% |
| TTGAAGTAATATGTCGCATC+CGG | - | chr5_3:11960156-11960175 | None:intergenic | 35.0% | |
| GATGCGACATATTACTTCAA+CGG | + | chr5_3:11960156-11960175 | Msa0798910:CDS | 35.0% | |
| TTTGGGTGTATTCACAAGCT+GGG | - | chr5_3:11958613-11958632 | None:intergenic | 40.0% | |
| ATTTGGGTGTATTCACAAGC+TGG | - | chr5_3:11958614-11958633 | None:intergenic | 40.0% | |
| CGTAGTAAGAAGAACAAAGG+TGG | + | chr5_3:11958765-11958784 | Msa0798910:CDS | 40.0% | |
| GAAGAAGGATAGACTTGCAA+TGG | + | chr5_3:11958893-11958912 | Msa0798910:CDS | 40.0% | |
| AACCAAACTGCAACTTGTCT+GGG | - | chr5_3:11958933-11958952 | None:intergenic | 40.0% | |
| ! | AGTTTGGTTCCAGAATCGAA+GGG | + | chr5_3:11958944-11958963 | Msa0798910:CDS | 40.0% |
| AAGGAGACACTTCTCAAGAA+TGG | - | chr5_3:11959033-11959052 | None:intergenic | 40.0% | |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_3:11959052-11959071 | None:intergenic | 40.0% |
| ! | ATGAAGCAAGAGGTATACCT+TGG | - | chr5_3:11959060-11959079 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_3:11959301-11959320 | Msa0798910:intron | 40.0% | |
| TTTGCTTTGTCCTGAAGAAC+CGG | - | chr5_3:11959441-11959460 | None:intergenic | 40.0% | |
| TATGCACGTTCATATGTGGT+GGG | - | chr5_3:11959511-11959530 | None:intergenic | 40.0% | |
| ATATGCACGTTCATATGTGG+TGG | - | chr5_3:11959512-11959531 | None:intergenic | 40.0% | |
| CTCATATGCACGTTCATATG+TGG | - | chr5_3:11959515-11959534 | None:intergenic | 40.0% | |
| !! | TAACAAGTTGGCCTTGAGAA+AGG | - | chr5_3:11959779-11959798 | None:intergenic | 40.0% |
| ! | GGACATTGATTAGAGGGTAA+TGG | - | chr5_3:11959846-11959865 | None:intergenic | 40.0% |
| ! | GGTGTAGGACATTGATTAGA+GGG | - | chr5_3:11959852-11959871 | None:intergenic | 40.0% |
| ! | TGGTGTAGGACATTGATTAG+AGG | - | chr5_3:11959853-11959872 | None:intergenic | 40.0% |
| TAATGAAAGAGACATGCACG+TGG | - | chr5_3:11959873-11959892 | None:intergenic | 40.0% | |
| TTCACAATCCATGGAAGTAG+TGG | + | chr5_3:11960068-11960087 | Msa0798910:CDS | 40.0% | |
| TTTGGGTGTATTCACAAGCT+GGG | - | chr5_3:11958613-11958632 | None:intergenic | 40.0% | |
| ATTTGGGTGTATTCACAAGC+TGG | - | chr5_3:11958614-11958633 | None:intergenic | 40.0% | |
| CGTAGTAAGAAGAACAAAGG+TGG | + | chr5_3:11958765-11958784 | Msa0798910:CDS | 40.0% | |
| GAAGAAGGATAGACTTGCAA+TGG | + | chr5_3:11958893-11958912 | Msa0798910:CDS | 40.0% | |
| AACCAAACTGCAACTTGTCT+GGG | - | chr5_3:11958933-11958952 | None:intergenic | 40.0% | |
| ! | AGTTTGGTTCCAGAATCGAA+GGG | + | chr5_3:11958944-11958963 | Msa0798910:CDS | 40.0% |
| AAGGAGACACTTCTCAAGAA+TGG | - | chr5_3:11959033-11959052 | None:intergenic | 40.0% | |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_3:11959052-11959071 | None:intergenic | 40.0% |
| ! | ATGAAGCAAGAGGTATACCT+TGG | - | chr5_3:11959060-11959079 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_3:11959301-11959320 | Msa0798910:intron | 40.0% | |
| TTTGCTTTGTCCTGAAGAAC+CGG | - | chr5_3:11959441-11959460 | None:intergenic | 40.0% | |
| TATGCACGTTCATATGTGGT+GGG | - | chr5_3:11959511-11959530 | None:intergenic | 40.0% | |
| ATATGCACGTTCATATGTGG+TGG | - | chr5_3:11959512-11959531 | None:intergenic | 40.0% | |
| CTCATATGCACGTTCATATG+TGG | - | chr5_3:11959515-11959534 | None:intergenic | 40.0% | |
| !! | TAACAAGTTGGCCTTGAGAA+AGG | - | chr5_3:11959779-11959798 | None:intergenic | 40.0% |
| ! | GGACATTGATTAGAGGGTAA+TGG | - | chr5_3:11959846-11959865 | None:intergenic | 40.0% |
| ! | GGTGTAGGACATTGATTAGA+GGG | - | chr5_3:11959852-11959871 | None:intergenic | 40.0% |
| ! | TGGTGTAGGACATTGATTAG+AGG | - | chr5_3:11959853-11959872 | None:intergenic | 40.0% |
| TAATGAAAGAGACATGCACG+TGG | - | chr5_3:11959873-11959892 | None:intergenic | 40.0% | |
| TTCACAATCCATGGAAGTAG+TGG | + | chr5_3:11960068-11960087 | Msa0798910:CDS | 40.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | - | chr5_3:11958756-11958775 | None:intergenic | 45.0% | |
| GATAGACTTGCAATGGAGCT+TGG | + | chr5_3:11958900-11958919 | Msa0798910:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTT+TGG | + | chr5_3:11958928-11958947 | Msa0798910:CDS | 45.0% | |
| GAACCAAACTGCAACTTGTC+TGG | - | chr5_3:11958934-11958953 | None:intergenic | 45.0% | |
| ! | CAGTTTGGTTCCAGAATCGA+AGG | + | chr5_3:11958943-11958962 | Msa0798910:CDS | 45.0% |
| GAGACACTTCTCAAGAATGG+TGG | - | chr5_3:11959030-11959049 | None:intergenic | 45.0% | |
| ! | GAAGTGTCTCCTTGAAACCA+AGG | + | chr5_3:11959040-11959059 | Msa0798910:CDS | 45.0% |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_3:11959304-11959323 | Msa0798910:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_3:11959310-11959329 | None:intergenic | 45.0% | |
| !! | AATAAGCACTGGCATGCAAC+CGG | + | chr5_3:11959419-11959438 | Msa0798910:intron | 45.0% |
| ATGAACGTGCATATGAGCTC+TGG | + | chr5_3:11959518-11959537 | Msa0798910:intron | 45.0% | |
| TGAACGTGCATATGAGCTCT+GGG | + | chr5_3:11959519-11959538 | Msa0798910:intron | 45.0% | |
| !! | AGGGTAATGGGGTTTCACTT+GGG | - | chr5_3:11959833-11959852 | None:intergenic | 45.0% |
| !! | AGCTACTATTTGGCTCTCGA+AGG | - | chr5_3:11960032-11960051 | None:intergenic | 45.0% |
| GACATATTACTTCAACGGCC+AGG | + | chr5_3:11960161-11960180 | Msa0798910:CDS | 45.0% | |
| ATTACTTCAACGGCCAGGAA+TGG | + | chr5_3:11960166-11960185 | Msa0798910:CDS | 45.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | - | chr5_3:11958756-11958775 | None:intergenic | 45.0% | |
| GATAGACTTGCAATGGAGCT+TGG | + | chr5_3:11958900-11958919 | Msa0798910:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTT+TGG | + | chr5_3:11958928-11958947 | Msa0798910:CDS | 45.0% | |
| GAACCAAACTGCAACTTGTC+TGG | - | chr5_3:11958934-11958953 | None:intergenic | 45.0% | |
| ! | CAGTTTGGTTCCAGAATCGA+AGG | + | chr5_3:11958943-11958962 | Msa0798910:CDS | 45.0% |
| GAGACACTTCTCAAGAATGG+TGG | - | chr5_3:11959030-11959049 | None:intergenic | 45.0% | |
| ! | GAAGTGTCTCCTTGAAACCA+AGG | + | chr5_3:11959040-11959059 | Msa0798910:CDS | 45.0% |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_3:11959304-11959323 | Msa0798910:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_3:11959310-11959329 | None:intergenic | 45.0% | |
| !! | AATAAGCACTGGCATGCAAC+CGG | + | chr5_3:11959419-11959438 | Msa0798910:intron | 45.0% |
| ATGAACGTGCATATGAGCTC+TGG | + | chr5_3:11959518-11959537 | Msa0798910:intron | 45.0% | |
| TGAACGTGCATATGAGCTCT+GGG | + | chr5_3:11959519-11959538 | Msa0798910:intron | 45.0% | |
| !! | AGGGTAATGGGGTTTCACTT+GGG | - | chr5_3:11959833-11959852 | None:intergenic | 45.0% |
| !! | AGCTACTATTTGGCTCTCGA+AGG | - | chr5_3:11960032-11960051 | None:intergenic | 45.0% |
| GACATATTACTTCAACGGCC+AGG | + | chr5_3:11960161-11960180 | Msa0798910:CDS | 45.0% | |
| ATTACTTCAACGGCCAGGAA+TGG | + | chr5_3:11960166-11960185 | Msa0798910:CDS | 45.0% | |
| !! | GAGGGTAATGGGGTTTCACT+TGG | - | chr5_3:11959834-11959853 | None:intergenic | 50.0% |
| AAGAGACATGCACGTGGTGT+AGG | - | chr5_3:11959867-11959886 | None:intergenic | 50.0% | |
| GCTAACAGAGCAGCTTTCTG+AGG | + | chr5_3:11959987-11960006 | Msa0798910:CDS | 50.0% | |
| TTGTGGGTCCACTACTTCCA+TGG | - | chr5_3:11960079-11960098 | None:intergenic | 50.0% | |
| !! | GAGGGTAATGGGGTTTCACT+TGG | - | chr5_3:11959834-11959853 | None:intergenic | 50.0% |
| AAGAGACATGCACGTGGTGT+AGG | - | chr5_3:11959867-11959886 | None:intergenic | 50.0% | |
| GCTAACAGAGCAGCTTTCTG+AGG | + | chr5_3:11959987-11960006 | Msa0798910:CDS | 50.0% | |
| TTGTGGGTCCACTACTTCCA+TGG | - | chr5_3:11960079-11960098 | None:intergenic | 50.0% | |
| GGTTCCAGAATCGAAGGGCT+AGG | + | chr5_3:11958949-11958968 | Msa0798910:CDS | 55.0% | |
| TCCAGAATCGAAGGGCTAGG+TGG | + | chr5_3:11958952-11958971 | Msa0798910:CDS | 55.0% | |
| TCCACCTAGCCCTTCGATTC+TGG | - | chr5_3:11958956-11958975 | None:intergenic | 55.0% | |
| ! | TGGCATGCAACCGGTTCTTC+AGG | + | chr5_3:11959428-11959447 | Msa0798910:intron | 55.0% |
| !! | GCAGCTTTCTGAGGCAGAGA+AGG | + | chr5_3:11959996-11960015 | Msa0798910:CDS | 55.0% |
| GGTTCCAGAATCGAAGGGCT+AGG | + | chr5_3:11958949-11958968 | Msa0798910:CDS | 55.0% | |
| TCCAGAATCGAAGGGCTAGG+TGG | + | chr5_3:11958952-11958971 | Msa0798910:CDS | 55.0% | |
| TCCACCTAGCCCTTCGATTC+TGG | - | chr5_3:11958956-11958975 | None:intergenic | 55.0% | |
| ! | TGGCATGCAACCGGTTCTTC+AGG | + | chr5_3:11959428-11959447 | Msa0798910:intron | 55.0% |
| !! | GCAGCTTTCTGAGGCAGAGA+AGG | + | chr5_3:11959996-11960015 | Msa0798910:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 11958481 | 11960314 | 11958481 | ID=Msa0798910;Name=Msa0798910 |
| chr5_3 | mRNA | 11958481 | 11960314 | 11958481 | ID=Msa0798910-mRNA-1;Parent=Msa0798910;Name=Msa0798910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=88|1|1|1|1|1|3|108|210 |
| chr5_3 | exon | 11958481 | 11958647 | 11958481 | ID=Msa0798910-mRNA-1:exon:4875;Parent=Msa0798910-mRNA-1 |
| chr5_3 | exon | 11958736 | 11959061 | 11958736 | ID=Msa0798910-mRNA-1:exon:4876;Parent=Msa0798910-mRNA-1 |
| chr5_3 | exon | 11959979 | 11960314 | 11959979 | ID=Msa0798910-mRNA-1:exon:4877;Parent=Msa0798910-mRNA-1 |
| chr5_3 | five_prime_UTR | 11958481 | 11958568 | 11958481 | ID=Msa0798910-mRNA-1:five_prime_utr;Parent=Msa0798910-mRNA-1 |
| chr5_3 | CDS | 11958569 | 11958647 | 11958569 | ID=Msa0798910-mRNA-1:cds;Parent=Msa0798910-mRNA-1 |
| chr5_3 | CDS | 11958736 | 11959061 | 11958736 | ID=Msa0798910-mRNA-1:cds;Parent=Msa0798910-mRNA-1 |
| chr5_3 | CDS | 11959979 | 11960206 | 11959979 | ID=Msa0798910-mRNA-1:cds;Parent=Msa0798910-mRNA-1 |
| chr5_3 | three_prime_UTR | 11960207 | 11960314 | 11960207 | ID=Msa0798910-mRNA-1:three_prime_utr;Parent=Msa0798910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
