AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0716490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716490 MtrunA17_Chr5g0403931 90.389 489 10 2 1 458 1 483 0.0 899
Msa0716490 MtrunA17_Chr8g0373441 75.490 408 64 3 1 376 1 404 0.0 617
Msa0716490 MtrunA17_Chr7g0226771 38.641 471 247 6 13 453 10 468 1.40e-120 360
Msa0716490 MtrunA17_Chr3g0113321 38.621 435 228 6 33 437 26 451 1.13e-103 317
Msa0716490 MtrunA17_Chr8g0341951 34.498 458 248 8 31 453 30 470 3.27e-90 282
Msa0716490 MtrunA17_Chr6g0478161 32.671 453 270 6 26 450 40 485 5.99e-88 277
Msa0716490 MtrunA17_Chr8g0372411 31.858 452 256 7 37 452 40 475 5.93e-85 269
Msa0716490 MtrunA17_Chr5g0397971 32.075 477 274 9 11 452 6 467 1.17e-83 265
Msa0716490 MtrunA17_Chr3g0078411 31.648 455 257 7 33 454 30 463 3.35e-78 251
Msa0716490 MtrunA17_Chr6g0455461 31.601 481 274 9 8 454 4 463 3.77e-78 250
Msa0716490 MtrunA17_Chr7g0219961 32.892 453 249 10 36 455 33 463 9.56e-76 244
Msa0716490 MtrunA17_Chr5g0443401 30.204 490 284 11 9 457 7 479 9.51e-69 226
Msa0716490 MtrunA17_Chr8g0380471 31.185 481 278 12 11 453 9 474 5.01e-66 219
Msa0716490 MtrunA17_Chr5g0408181 30.165 484 271 12 5 450 4 458 4.57e-65 216
Msa0716490 MtrunA17_Chr2g0293421 29.730 444 262 7 22 428 31 461 2.30e-63 213
Msa0716490 MtrunA17_Chr8g0369791 30.165 484 271 13 8 452 7 462 1.01e-62 210
Msa0716490 MtrunA17_Chr1g0153371 30.886 463 271 10 3 433 2 447 2.08e-60 204
Msa0716490 MtrunA17_Chr5g0443731 30.227 440 265 6 28 434 21 451 2.62e-59 201
Msa0716490 MtrunA17_Chr8g0381541 30.485 433 248 10 36 428 43 462 3.39e-58 199
Msa0716490 MtrunA17_Chr8g0381571 30.465 430 246 10 36 425 43 459 5.45e-58 198
Msa0716490 MtrunA17_Chr3g0089361 30.269 446 255 10 25 433 29 455 1.36e-57 197
Msa0716490 MtrunA17_Chr4g0044851 29.913 458 261 10 30 451 33 466 2.37e-57 196
Msa0716490 MtrunA17_Chr2g0293411 29.663 445 264 8 22 428 27 460 1.08e-56 195
Msa0716490 MtrunA17_Chr3g0107511 27.778 486 302 8 10 456 7 482 3.45e-55 191
Msa0716490 MtrunA17_Chr4g0044841 29.764 467 274 11 20 451 21 468 1.49e-54 189
Msa0716490 MtrunA17_Chr8g0388921 28.425 489 292 11 9 455 5 477 5.89e-54 187
Msa0716490 MtrunA17_Chr5g0400421 28.795 448 272 8 35 446 44 480 5.50e-53 185
Msa0716490 MtrunA17_Chr1g0164371 28.870 478 293 7 5 452 13 473 8.48e-53 184
Msa0716490 MtrunA17_Chr3g0107501 26.316 456 291 6 35 455 32 477 1.20e-52 184
Msa0716490 MtrunA17_Chr3g0089351 28.316 392 229 7 75 433 1 373 9.33e-50 174
Msa0716490 MtrunA17_Chr8g0339861 26.667 495 283 15 5 442 2 473 3.18e-47 169
Msa0716490 MtrunA17_Chr3g0141801 25.482 467 285 9 10 433 15 461 1.39e-46 168
Msa0716490 MtrunA17_Chr5g0400411 29.630 432 253 9 35 428 44 462 2.61e-46 167
Msa0716490 MtrunA17_Chr8g0372711 28.802 434 248 11 38 431 48 460 1.41e-43 159
Msa0716490 MtrunA17_Chr5g0404881 32.579 221 144 3 13 230 10 228 1.93e-39 142
Msa0716490 MtrunA17_Chr5g0436981 39.873 158 93 1 31 188 23 178 4.04e-39 140
Msa0716490 MtrunA17_Chr8g0380931 25.322 466 259 13 20 429 47 479 9.78e-39 146
Msa0716490 MtrunA17_Chr5g0404861 42.958 142 72 2 315 456 28 160 4.04e-34 125
Msa0716490 MtrunA17_Chr5g0437001 48.148 108 50 1 315 422 7 108 4.77e-31 117
Msa0716490 MtrunA17_Chr8g0381551 29.592 294 192 8 36 319 43 331 1.97e-29 117
Msa0716490 MtrunA17_Chr8g0373431 69.565 69 20 1 390 458 2 69 5.25e-28 105
Msa0716490 MtrunA17_Chr8g0381561 41.593 113 57 1 313 425 7 110 7.95e-26 102
Msa0716490 MtrunA17_Chr1g0161671 24.684 316 217 9 14 317 9 315 4.61e-25 105
Msa0716490 MtrunA17_Chr4g0000171 25.749 334 202 11 10 315 9 324 2.34e-24 103
Msa0716490 MtrunA17_Chr4g0000151 40.157 127 66 3 315 441 12 128 1.05e-23 96.7
Msa0716490 MtrunA17_Chr3g0089291 25.210 238 164 5 75 307 1 229 1.29e-19 87.8
Msa0716490 MtrunA17_Chr5g0436991 34.965 143 88 3 174 315 18 156 1.87e-18 82.4
Msa0716490 MtrunA17_Chr0c19g0493771 27.230 213 126 4 243 429 411 620 2.34e-18 87.8
Msa0716490 MtrunA17_Chr3g0101601 23.760 484 294 15 5 431 2 467 6.73e-18 85.9
Msa0716490 MtrunA17_Chr4g0000161 25.172 290 199 8 36 315 43 324 1.49e-17 83.6
Msa0716490 MtrunA17_Chr1g0160851 23.409 487 288 17 6 429 1 465 3.28e-17 84.0
Msa0716490 MtrunA17_Chr6g0463541 39.796 98 49 2 339 436 4 91 7.67e-17 76.3
Msa0716490 MtrunA17_Chr3g0101621 23.270 477 295 13 5 429 2 459 1.01e-16 82.4
Msa0716490 MtrunA17_Chr7g0215181 26.642 274 154 7 215 450 240 504 3.29e-16 80.9
Msa0716490 MtrunA17_Chr4g0013471 24.925 333 192 12 36 350 43 335 3.84e-16 80.1
Msa0716490 MtrunA17_Chr4g0047641 23.579 475 289 14 17 431 26 486 4.68e-16 80.5
Msa0716490 MtrunA17_Chr1g0205361 23.640 478 291 16 7 429 7 465 4.89e-16 80.5
Msa0716490 MtrunA17_Chr1g0160861 28.205 234 131 5 227 429 79 306 1.00e-15 78.2
Msa0716490 MtrunA17_Chr5g0395381 22.088 498 291 16 4 451 11 461 2.07e-15 78.2
Msa0716490 MtrunA17_Chr5g0396521 25.620 242 128 7 240 429 301 542 3.51e-15 77.8
Msa0716490 MtrunA17_Chr5g0395321 23.228 508 294 19 10 451 9 486 4.70e-15 77.4
Msa0716490 MtrunA17_Chr7g0246151 26.038 265 151 7 229 456 245 501 6.25e-15 77.0
Msa0716490 MtrunA17_Chr6g0457421 26.236 263 152 7 220 450 250 502 6.87e-15 76.6
Msa0716490 MtrunA17_Chr7g0265611 29.018 224 120 5 243 432 270 488 8.55e-15 76.6
Msa0716490 MtrunA17_Chr1g0161641 40.476 84 41 1 342 425 13 87 2.70e-14 68.2
Msa0716490 MtrunA17_Chr5g0431511 21.166 463 275 16 36 431 33 472 9.00e-14 73.2
Msa0716490 MtrunA17_Chr1g0174431 31.034 145 86 2 315 445 58 202 1.06e-13 70.1
Msa0716490 MtrunA17_Chr1g0174471 23.265 245 151 4 237 447 269 510 2.47e-13 72.0
Msa0716490 MtrunA17_Chr5g0401681 23.673 490 276 18 6 428 2 460 2.96e-13 71.6
Msa0716490 MtrunA17_Chr8g0336361 33.333 126 78 3 315 439 421 541 3.53e-13 71.6
Msa0716490 MtrunA17_Chr1g0161661 37.838 74 37 1 358 431 12 76 5.51e-13 65.1
Msa0716490 MtrunA17_Chr5g0405001 20.859 489 297 12 10 431 18 483 5.60e-13 70.9
Msa0716490 MtrunA17_Chr2g0314781 35.606 132 78 3 315 445 42 167 6.54e-13 67.0
Msa0716490 MtrunA17_Chr4g0035921 22.062 485 301 16 7 429 12 481 6.61e-13 70.5
Msa0716490 MtrunA17_Chr1g0203141 25.463 216 121 5 249 430 280 489 8.00e-13 70.5
Msa0716490 MtrunA17_Chr1g0174451 24.569 232 139 4 234 432 251 479 9.08e-13 70.1
Msa0716490 MtrunA17_Chr1g0200961 25.051 487 269 20 10 429 8 465 1.12e-12 69.7
Msa0716490 MtrunA17_Chr1g0203151 25.238 210 118 4 255 430 281 485 1.18e-12 69.7
Msa0716490 MtrunA17_Chr2g0288661 24.837 306 163 10 168 430 211 492 1.32e-12 69.7
Msa0716490 MtrunA17_Chr4g0004601 28.311 219 123 7 240 432 297 507 1.36e-12 69.7
Msa0716490 MtrunA17_Chr2g0313801 28.111 217 108 7 243 430 293 490 1.96e-12 69.3
Msa0716490 MtrunA17_Chr8g0354531 26.838 272 151 10 202 432 357 621 2.34e-12 69.3
Msa0716490 MtrunA17_Chr1g0197891 25.514 486 270 21 10 432 10 466 2.48e-12 68.9
Msa0716490 MtrunA17_Chr2g0313791 26.606 327 182 11 163 458 209 508 3.58e-12 68.2
Msa0716490 MtrunA17_Chr5g0400391 41.429 70 32 1 359 428 1 61 3.94e-12 62.8
Msa0716490 MtrunA17_Chr4g0058231 26.016 246 136 6 225 429 229 469 4.55e-12 67.8
Msa0716490 MtrunA17_Chr7g0235551 33.898 118 77 1 315 431 361 478 5.10e-12 67.8
Msa0716490 MtrunA17_Chr8g0382901 21.868 439 283 13 35 432 27 446 5.75e-12 68.2
Msa0716490 MtrunA17_Chr1g0197881 25.562 489 273 23 9 432 3 465 5.85e-12 67.8
Msa0716490 MtrunA17_Chr2g0313781 27.134 328 179 12 163 458 226 525 6.21e-12 67.8
Msa0716490 MtrunA17_Chr4g0053621 22.887 485 284 17 8 428 6 464 7.59e-12 67.4
Msa0716490 MtrunA17_Chr7g0258211 22.699 489 304 15 3 429 4 480 7.99e-12 67.4
Msa0716490 MtrunA17_Chr5g0401691 23.110 463 285 12 17 428 35 477 1.15e-11 66.6
Msa0716490 MtrunA17_Chr7g0246181 27.402 281 152 9 217 456 232 501 1.34e-11 66.6
Msa0716490 MtrunA17_Chr8g0355961 23.625 491 297 15 1 431 4 476 1.35e-11 66.6
Msa0716490 MtrunA17_Chr1g0174441 24.336 226 132 5 239 429 276 497 1.38e-11 66.6
Msa0716490 MtrunA17_Chr8g0356001 22.967 492 299 16 1 431 4 476 1.68e-11 66.2
Msa0716490 MtrunA17_Chr1g0197851 24.898 490 276 23 9 432 3 466 2.11e-11 65.9
Msa0716490 MtrunA17_Chr8g0361471 20.625 480 301 16 13 429 7 469 2.34e-11 65.9
Msa0716490 MtrunA17_Chr2g0313771 25.652 230 129 5 243 446 300 513 2.63e-11 65.5
Msa0716490 MtrunA17_Chr8g0354571 26.609 233 125 8 239 432 275 500 2.95e-11 65.5
Msa0716490 MtrunA17_Chr1g0174481 21.721 244 154 4 238 447 249 489 3.02e-11 65.5
Msa0716490 MtrunA17_Chr4g0058191 24.895 237 141 5 225 429 227 458 3.03e-11 65.5
Msa0716490 MtrunA17_Chr7g0235261 25.751 233 137 7 240 445 276 499 3.41e-11 65.1
Msa0716490 MtrunA17_Chr3g0116741 25.131 191 111 3 271 434 303 488 3.90e-11 65.1
Msa0716490 MtrunA17_Chr4g0020041 22.667 225 133 4 243 431 253 472 5.51e-11 64.7
Msa0716490 MtrunA17_Chr2g0313811 27.273 231 128 7 229 430 283 502 6.25e-11 64.3
Msa0716490 MtrunA17_Chr8g0362481 25.112 223 129 5 243 432 192 409 8.47e-11 63.9
Msa0716490 MtrunA17_Chr2g0313821 25.837 209 113 5 248 430 298 490 8.95e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0716490 AT3G50660.1 65.975 482 108 4 26 452 29 509 0.0 640
Msa0716490 AT3G50660.2 66.832 404 82 2 26 377 29 432 0.0 551
Msa0716490 AT5G05690.1 38.018 434 228 6 34 437 29 451 3.72e-101 310
Msa0716490 AT5G14400.2 34.670 424 256 4 41 453 1 414 2.44e-99 304
Msa0716490 AT5G14400.3 35.427 398 237 3 41 427 1 389 2.59e-93 288
Msa0716490 AT1G73340.1 33.265 487 280 8 1 452 1 477 5.40e-93 290
Msa0716490 AT4G36380.1 34.725 455 245 8 36 452 69 509 1.39e-89 282
Msa0716490 AT1G12740.1 33.261 463 255 9 28 453 23 468 4.02e-87 274
Msa0716490 AT1G12740.2 32.762 467 258 9 28 453 23 474 2.58e-85 270
Msa0716490 AT1G12740.4 32.836 469 255 10 28 453 23 474 1.23e-84 268
Msa0716490 AT3G13730.1 33.038 451 257 6 36 453 51 489 1.57e-84 268
Msa0716490 AT5G05690.2 37.632 380 202 5 34 383 29 403 3.77e-84 265
Msa0716490 AT3G13730.2 33.886 422 236 5 37 425 52 463 5.67e-83 263
Msa0716490 AT5G14400.4 33.939 330 189 1 41 341 1 330 1.82e-72 232
Msa0716490 AT1G55940.2 30.364 494 280 12 11 457 18 494 2.09e-72 237
Msa0716490 AT3G30180.1 30.833 480 273 9 14 455 7 465 3.83e-72 235
Msa0716490 AT5G14400.1 31.707 369 231 4 96 453 2 360 4.06e-72 232
Msa0716490 AT5G38970.1 30.921 456 261 7 33 455 31 465 2.97e-71 233
Msa0716490 AT1G55940.1 30.736 462 257 11 11 425 18 463 2.17e-69 228
Msa0716490 AT3G44970.1 31.398 465 259 10 30 452 27 473 6.67e-69 227
Msa0716490 AT4G19230.1 30.435 483 272 13 5 450 2 457 1.21e-66 221
Msa0716490 AT4G19230.2 30.063 479 271 13 5 446 2 453 8.51e-64 214
Msa0716490 AT5G45340.1 29.228 479 281 10 8 453 7 460 2.37e-63 212
Msa0716490 AT5G05690.3 34.311 341 183 6 127 437 3 332 1.08e-62 207
Msa0716490 AT5G45340.2 29.095 464 271 10 8 438 7 445 2.86e-61 206
Msa0716490 AT3G19270.2 29.424 486 276 11 14 457 8 468 4.15e-61 206
Msa0716490 AT1G78490.1 28.776 490 284 12 11 452 1 473 3.45e-60 204
Msa0716490 AT1G05160.2 31.702 429 243 11 36 426 45 461 8.71e-60 203
Msa0716490 AT1G05160.1 31.702 429 243 11 36 426 45 461 8.71e-60 203
Msa0716490 AT1G12740.3 32.479 351 191 7 28 341 23 364 2.76e-58 196
Msa0716490 AT5G48000.2 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0716490 AT5G48000.4 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0716490 AT5G48000.7 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0716490 AT5G48000.6 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0716490 AT5G48000.5 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0716490 AT5G48000.3 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0716490 AT3G19270.1 29.167 456 256 10 14 427 8 438 3.92e-58 198
Msa0716490 AT5G48000.1 28.112 466 273 11 30 452 68 514 2.40e-57 197
Msa0716490 AT2G42850.1 29.712 451 268 10 36 452 45 480 6.32e-56 193
Msa0716490 AT5G38970.3 30.851 376 215 5 33 375 31 394 2.54e-55 190
Msa0716490 AT5G36110.1 27.790 457 283 9 35 456 33 477 1.26e-54 189
Msa0716490 AT5G38970.2 28.822 399 235 6 90 455 2 384 2.22e-54 186
Msa0716490 AT5G38970.4 28.822 399 235 6 90 455 2 384 2.22e-54 186
Msa0716490 AT2G29090.2 27.655 452 277 7 33 452 46 479 4.06e-53 186
Msa0716490 AT2G29090.1 27.655 452 277 7 33 452 46 479 4.06e-53 186
Msa0716490 AT4G36380.2 30.994 342 196 4 36 341 69 406 4.91e-53 184
Msa0716490 AT2G32440.2 28.118 441 269 9 27 431 35 463 4.20e-52 183
Msa0716490 AT2G32440.1 28.118 441 269 9 27 431 35 463 4.20e-52 183
Msa0716490 AT4G15393.2 26.141 482 299 11 8 452 5 466 4.20e-52 182
Msa0716490 AT1G19630.1 26.250 480 296 12 12 452 12 472 1.37e-48 173
Msa0716490 AT1G65670.1 25.835 449 279 9 8 421 5 434 3.33e-48 172
Msa0716490 AT4G15396.1 25.873 487 296 14 8 452 5 468 1.04e-47 171
Msa0716490 AT4G15300.2 24.286 490 301 12 11 456 8 471 3.92e-47 169
Msa0716490 AT4G15396.3 26.754 456 271 12 8 421 5 439 5.59e-47 169
Msa0716490 AT4G15300.3 24.638 483 289 13 23 456 5 461 7.38e-47 168
Msa0716490 AT1G78490.2 28.502 414 239 10 11 376 1 405 8.05e-46 164
Msa0716490 AT1G19630.3 25.991 454 279 11 12 427 12 446 7.78e-45 162
Msa0716490 AT4G15396.2 25.373 469 300 15 8 452 5 447 1.47e-41 154
Msa0716490 AT2G29090.3 27.723 404 234 9 86 452 2 384 2.79e-41 151
Msa0716490 AT4G15310.1 26.061 495 302 15 4 456 2 474 2.89e-41 153
Msa0716490 AT4G15300.1 23.016 504 293 15 23 456 5 483 1.08e-39 149
Msa0716490 AT3G30290.1 24.402 418 262 11 74 456 3 401 2.43e-38 144
Msa0716490 AT4G15393.1 24.816 407 257 8 8 377 5 399 2.20e-37 141
Msa0716490 AT1G19630.2 24.938 405 257 10 12 378 12 407 6.72e-36 138
Msa0716490 AT2G42850.2 29.023 348 210 6 36 350 45 388 1.42e-34 133
Msa0716490 AT4G15396.4 24.331 411 254 10 8 376 5 400 1.21e-33 131
Msa0716490 AT5G36110.2 26.571 350 220 7 35 350 33 379 2.08e-32 127
Msa0716490 AT3G44970.2 30.132 302 190 7 30 320 27 318 4.57e-32 126
Msa0716490 AT4G15393.3 23.096 407 231 8 8 377 5 366 1.13e-29 119
Msa0716490 AT5G36140.1 26.182 275 200 3 35 308 32 304 8.10e-27 110
Msa0716490 AT2G29090.4 24.390 287 207 5 33 317 46 324 4.07e-22 97.4
Msa0716490 AT4G12300.1 23.188 483 287 18 10 431 22 481 2.64e-20 94.0
Msa0716490 AT5G57220.1 24.400 500 304 16 11 455 1 481 2.10e-19 90.9
Msa0716490 AT1G31800.1 28.571 245 131 6 226 429 300 541 2.71e-19 91.3
Msa0716490 AT5G36130.1 32.168 143 87 2 315 456 7 140 4.49e-19 84.0
Msa0716490 AT5G36220.1 26.446 484 269 19 11 432 10 468 3.54e-16 81.3
Msa0716490 AT4G12320.1 21.107 488 310 15 5 433 14 485 4.70e-16 80.9
Msa0716490 AT1G66540.2 27.632 228 120 5 236 428 69 286 7.99e-16 79.0
Msa0716490 AT5G67310.1 23.482 494 291 16 10 447 19 481 9.52e-16 79.7
Msa0716490 AT1G66540.1 27.632 228 120 5 236 428 128 345 1.40e-15 78.6
Msa0716490 AT4G37410.1 22.622 473 282 16 15 428 12 459 2.06e-15 79.0
Msa0716490 AT2G26710.1 23.856 306 192 5 168 446 214 505 6.18e-15 77.4
Msa0716490 AT5G04330.1 26.230 244 137 6 227 431 235 474 1.48e-14 76.3
Msa0716490 AT5G52320.1 23.184 358 216 10 131 433 126 479 1.87e-14 75.9
Msa0716490 AT5G52320.2 23.184 358 216 10 131 433 126 479 1.89e-14 75.9
Msa0716490 AT3G20950.1 20.675 474 318 9 9 429 15 483 2.10e-14 75.9
Msa0716490 AT4G37400.1 24.156 385 231 11 91 428 89 459 3.26e-14 75.1
Msa0716490 AT4G15110.1 25.620 242 128 8 240 429 309 550 4.19e-14 75.1
Msa0716490 AT4G37370.1 23.699 346 210 8 127 428 122 457 4.78e-14 74.7
Msa0716490 AT5G24910.1 23.922 255 150 5 237 452 280 529 4.81e-14 74.7
Msa0716490 AT2G26170.2 26.230 244 128 9 221 425 175 405 8.59e-14 73.6
Msa0716490 AT3G28740.1 23.410 346 211 8 127 428 131 466 9.67e-14 73.6
Msa0716490 AT5G47990.1 22.356 416 255 11 70 427 72 477 1.58e-13 73.2
Msa0716490 AT4G37360.1 29.714 175 86 3 281 428 294 458 3.61e-13 72.0
Msa0716490 AT4G37330.1 23.518 523 295 23 5 458 2 488 6.39e-13 70.9
Msa0716490 AT5G24900.2 22.222 252 153 5 239 452 161 407 6.71e-13 70.5
Msa0716490 AT4G37340.1 27.273 220 121 5 237 428 250 458 9.52e-13 70.5
Msa0716490 AT5G24900.1 22.222 252 153 5 239 452 278 524 1.06e-12 70.5
Msa0716490 AT5G06905.1 20.374 481 312 12 18 435 13 485 1.26e-12 70.1
Msa0716490 AT3G26310.1 21.339 478 295 14 15 431 9 466 6.45e-12 67.8
Msa0716490 AT1G50520.1 22.314 484 307 12 3 427 7 480 7.61e-12 67.8
Msa0716490 AT4G22710.1 25.000 220 123 6 243 428 276 487 9.55e-12 67.4
Msa0716490 AT3G26300.1 21.086 479 300 15 14 431 6 467 1.04e-11 67.4
Msa0716490 AT4G22690.1 25.000 220 123 6 243 428 307 518 1.23e-11 67.0
Msa0716490 AT3G26330.1 21.729 451 282 16 37 431 32 467 1.32e-11 67.0
Msa0716490 AT5G36220.2 28.319 226 118 7 237 432 111 322 1.68e-11 65.9
Msa0716490 AT2G45570.1 25.000 224 130 5 238 429 259 476 2.29e-11 66.2
Msa0716490 AT1G50560.1 24.215 223 136 2 243 432 264 486 2.74e-11 65.9
Msa0716490 AT3G20940.1 19.523 461 314 10 20 429 26 480 3.12e-11 65.9
Msa0716490 AT3G61040.1 27.014 211 116 4 251 428 258 463 4.03e-11 65.5
Msa0716490 AT3G14630.1 27.059 255 142 8 211 430 237 482 4.49e-11 65.5
Msa0716490 AT3G14630.2 27.059 255 142 8 211 430 292 537 4.55e-11 65.5

Find 124 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATAGTTGTAGCAGAATA+AGG 0.217364 5_1:-9934677 None:intergenic
ATTCTCAGCTTGCTCTTTGC+TGG 0.257780 5_1:+9935773 Msa0716490:CDS
TGCTTACTGGAGAGCATTAA+AGG 0.272186 5_1:+9935402 Msa0716490:CDS
ACTCTAATTTGTAGGCCTTT+AGG 0.278167 5_1:-9939504 None:intergenic
GAATGGATGATCTAACTAAT+TGG 0.284868 5_1:-9939569 None:intergenic
CTAGCTATTTACTTTCTTCC+TGG 0.288114 5_1:+9935824 Msa0716490:CDS
GCAGTTCACATTTAATTTGA+TGG 0.306128 5_1:+9935267 Msa0716490:intron
AGCTCAAGATGAAGCTAAAA+AGG 0.307230 5_1:+9935122 Msa0716490:CDS
ATCTCATTCTCAACTACAAT+TGG 0.307328 5_1:+9939430 Msa0716490:CDS
CCTTTCATTGGAGAAACTAT+TGG 0.327280 5_1:+9934644 Msa0716490:CDS
GAAGTTCATAGAGGGTAAAA+TGG 0.327358 5_1:+9935640 Msa0716490:CDS
GAAATGGTCTATGTTGGTTT+TGG 0.338998 5_1:+9934960 Msa0716490:CDS
TTGCCAGATGCACTTGAGTT+TGG 0.344847 5_1:-9939318 None:intergenic
AGCAGCCAAAATTCAAAATT+CGG 0.354001 5_1:+9939771 Msa0716490:three_prime_UTR
ATTTACAAATCAAATTTGTT+TGG 0.360844 5_1:+9934829 Msa0716490:CDS
GGTCATTGCAGCCGTGCATT+TGG 0.361495 5_1:+9936655 Msa0716490:CDS
CCTTATTCTGCTACAACTAT+AGG 0.365901 5_1:+9934677 Msa0716490:CDS
GCCCTTGTACTTCAATTGAT+TGG 0.367143 5_1:-9939866 None:intergenic
GGGCTTGGACTCTAATTTGT+AGG 0.371100 5_1:-9939512 None:intergenic
ATGTTGTGAGGTTCCTTCAT+AGG 0.375245 5_1:+9936452 Msa0716490:CDS
CTTATAAAAGCACACCCTAT+TGG 0.375632 5_1:+9934366 Msa0716490:five_prime_UTR
GTGCAGAACAATGGTAATAA+TGG 0.377374 5_1:+9939294 Msa0716490:intron
AGTAGCATTGGTGGAATACT+TGG 0.379754 5_1:+9934937 Msa0716490:CDS
CAGCAGATGCAGGATTGAAT+AGG 0.381275 5_1:+9934869 Msa0716490:CDS
GCCGTCTTGTTGTGAGCTCT+TGG 0.396925 5_1:+9935079 Msa0716490:CDS
AGAATGGGTTGGCCTTTCAT+TGG 0.400700 5_1:+9934632 Msa0716490:CDS
AAAGGCCAACCCATTCTTCC+TGG 0.403386 5_1:-9934626 None:intergenic
GATTGTACACAATAGATAAC+TGG 0.405101 5_1:-9940041 None:intergenic
TCCTGGTGGAAGATTAAGCT+TGG 0.409555 5_1:-9934609 None:intergenic
TAATCTTCCACCAGGAAGAA+TGG 0.418458 5_1:+9934616 Msa0716490:CDS
ATCATATTATAGAGTGGGCT+TGG 0.422340 5_1:-9939527 None:intergenic
CCTGGTGGAAGATTAAGCTT+GGG 0.423329 5_1:-9934608 None:intergenic
TGGAAGATTAAGCTTGGGTT+TGG 0.426015 5_1:-9934603 None:intergenic
CTTTAAGAGCCTTCCTATGA+AGG 0.427448 5_1:-9936465 None:intergenic
GCTCTCCAGTAAGCAGTTCC+AGG 0.429947 5_1:-9935394 None:intergenic
AATGAATGTGTGAAGCCAAT+AGG 0.432174 5_1:-9934381 None:intergenic
AAGTACAAGGGCATGTCAAT+AGG 0.437884 5_1:+9939877 Msa0716490:three_prime_UTR
TACAAATCAAATTTGTTTGG+TGG 0.441126 5_1:+9934832 Msa0716490:CDS
TCTGATCCTGCGCATAATCT+TGG 0.442201 5_1:-9939372 None:intergenic
GTACAATGTGGGTGGGGTAG+TGG 0.442595 5_1:-9939954 None:intergenic
GGACCAAACTCAAGTGCATC+TGG 0.443054 5_1:+9939315 Msa0716490:CDS
GCATCTGCTGAAACTATTGT+TGG 0.446616 5_1:-9934856 None:intergenic
GTAATAGTAGATTACAGTCC+TGG 0.446911 5_1:-9940005 None:intergenic
GCAAGAGGGAAATGAGAATT+CGG 0.447089 5_1:+9935682 Msa0716490:CDS
AGAATTAGCAAAGCTTGAAA+TGG 0.452248 5_1:+9939392 Msa0716490:CDS
CTCAAGCTATACTACAATTG+AGG 0.453230 5_1:+9935852 Msa0716490:CDS
CACAATACTGAAGTTCATAG+AGG 0.468015 5_1:+9935631 Msa0716490:CDS
AGTATTCCACCAATGCTACT+TGG 0.474096 5_1:-9934934 None:intergenic
AAATGCACGGCTGCAATGAC+CGG 0.475595 5_1:-9936653 None:intergenic
TAGAACACATCTATTGAAAG+AGG 0.476285 5_1:+9935044 Msa0716490:CDS
AATCTTCCACCAGGAAGAAT+GGG 0.477830 5_1:+9934617 Msa0716490:CDS
TTGGTGGAATACTTGGGAAA+TGG 0.482545 5_1:+9934944 Msa0716490:CDS
TACAACTATAGGAAAATTCA+TGG 0.486204 5_1:+9934688 Msa0716490:CDS
AAGAATCAAAAGAATGCAAG+AGG 0.490859 5_1:+9935667 Msa0716490:CDS
GGAAGGCTCTTAAAGATGTT+CGG 0.498371 5_1:+9936473 Msa0716490:CDS
ACAATAGTTTCAGCAGATGC+AGG 0.500312 5_1:+9934859 Msa0716490:CDS
TTTATTTGTATTATTATCCC+AGG 0.501827 5_1:+9939987 Msa0716490:three_prime_UTR
ACTTGGGAAATGGTCTATGT+TGG 0.503191 5_1:+9934954 Msa0716490:CDS
TCTCATTCTCAACTACAATT+GGG 0.506689 5_1:+9939431 Msa0716490:CDS
ATGAATGTGTGAAGCCAATA+GGG 0.510313 5_1:-9934380 None:intergenic
TTAATTATAGATGATCGATC+AGG 0.514959 5_1:-9939711 None:intergenic
TATAAAATGTACAATGTGGG+TGG 0.515913 5_1:-9939962 None:intergenic
AAAGTAAATAGCTAGAGCTA+TGG 0.522820 5_1:-9935816 None:intergenic
AGCCTAGAGGGAGAAGAAAA+CGG 0.530298 5_1:-9939914 None:intergenic
TGTGAACGAGACACTTAGGC+TGG 0.531377 5_1:+9936426 Msa0716490:CDS
TCTTGTTGTGAGCTCTTGGA+AGG 0.532636 5_1:+9935083 Msa0716490:CDS
CTCCATGGATTAAAGTGTTG+AGG 0.533456 5_1:-9936698 None:intergenic
CTTAAAGATGTTCGGTACAA+AGG 0.537490 5_1:+9936481 Msa0716490:CDS
TCAAGCTATACTACAATTGA+GGG 0.538319 5_1:+9935853 Msa0716490:CDS
ATAAAATGTACAATGTGGGT+GGG 0.540155 5_1:-9939961 None:intergenic
AATATATAAAATGTACAATG+TGG 0.540164 5_1:-9939966 None:intergenic
CTTTAATCCATGGAGATGGC+AGG 0.540834 5_1:+9936706 Msa0716490:CDS
AGGTTCATATTACAAAATGA+AGG 0.541377 5_1:+9934889 Msa0716490:CDS
AGTTATCCAAGTAGCATTGG+TGG 0.542541 5_1:+9934928 Msa0716490:CDS
TAAAATGTACAATGTGGGTG+GGG 0.542629 5_1:-9939960 None:intergenic
ATGTGGGTGGAAAGTCCTTC+CGG 0.546149 5_1:+9936634 Msa0716490:CDS
CCAATAGTTTCTCCAATGAA+AGG 0.546790 5_1:-9934644 None:intergenic
ATATATAAAATGTACAATGT+GGG 0.550546 5_1:-9939965 None:intergenic
CCTTTAGGAAAATCAACAAA+AGG 0.551181 5_1:-9939489 None:intergenic
TGTAGTTATCCAAGTAGCAT+TGG 0.551957 5_1:+9934925 Msa0716490:CDS
AACCAATCAATTGAAGTACA+AGG 0.553219 5_1:+9939864 Msa0716490:three_prime_UTR
GGACTAACCTGCCATCTCCA+TGG 0.558643 5_1:-9936713 None:intergenic
TAATAGTAGATTACAGTCCT+GGG 0.558947 5_1:-9940004 None:intergenic
AATCTTGGTCCTCCTCCAAA+CGG 0.560213 5_1:-9939357 None:intergenic
CCCAAGCTTAATCTTCCACC+AGG 0.560832 5_1:+9934608 Msa0716490:CDS
AACCTCAACACTTTAATCCA+TGG 0.561645 5_1:+9936696 Msa0716490:CDS
GCAGTTCCAGGAAAATTCAA+TGG 0.565674 5_1:-9935382 None:intergenic
TTCATCTTGAGCTGCAAATG+TGG 0.566713 5_1:-9935112 None:intergenic
AAGAAAACGGATAATGAAAG+TGG 0.570134 5_1:-9939901 None:intergenic
TATATAGCTACTAGGTAGCA+TGG 0.570385 5_1:-9939616 None:intergenic
GAAATCTAATAGAGCCTAGA+GGG 0.574545 5_1:-9939926 None:intergenic
TGAAATCTAATAGAGCCTAG+AGG 0.586886 5_1:-9939927 None:intergenic
TGTGAGGTTCCTTCATAGGA+AGG 0.587591 5_1:+9936456 Msa0716490:CDS
CTCAATTGTAGTATAGCTTG+AGG 0.591144 5_1:-9935851 None:intergenic
AGGTTGTGAACGAGACACTT+AGG 0.595014 5_1:+9936422 Msa0716490:intron
ATGGATTAAAGTGTTGAGGT+TGG 0.596823 5_1:-9936694 None:intergenic
AGTATAGCTTGAGGACAACC+AGG 0.597903 5_1:-9935842 None:intergenic
ACATTATGAGTCTTCAACCT+GGG 0.598352 5_1:+9935296 Msa0716490:CDS
GATATGATCATATTATAGAG+TGG 0.600493 5_1:-9939533 None:intergenic
AACACTTTAATCCATGGAGA+TGG 0.601114 5_1:+9936702 Msa0716490:CDS
CACATTATGAGTCTTCAACC+TGG 0.602197 5_1:+9935295 Msa0716490:CDS
TCATGGAACAACACATAGCA+AGG 0.602744 5_1:+9934705 Msa0716490:CDS
GGAAGGACTTTCCACCCACA+TGG 0.602750 5_1:-9936632 None:intergenic
GGTTCATATTACAAAATGAA+GGG 0.604734 5_1:+9934890 Msa0716490:CDS
ATATGATCATATTATAGAGT+GGG 0.604856 5_1:-9939532 None:intergenic
TTCCACCAGGAAGAATGGGT+TGG 0.608564 5_1:+9934621 Msa0716490:CDS
GGCCAACCCATTCTTCCTGG+TGG 0.611990 5_1:-9934623 None:intergenic
GGAGGACCAAGATTATGCGC+AGG 0.612238 5_1:+9939366 Msa0716490:CDS
GCACGGCTGCAATGACCGGA+AGG 0.622858 5_1:-9936649 None:intergenic
TCCAAGAGCTCACAACAAGA+CGG 0.630764 5_1:-9935080 None:intergenic
GTAGCATTGGTGGAATACTT+GGG 0.634040 5_1:+9934938 Msa0716490:CDS
GTTATGATATTCCATGTGGG+TGG 0.634243 5_1:+9936621 Msa0716490:CDS
ACCAATCAATTGAAGTACAA+GGG 0.635116 5_1:+9939865 Msa0716490:three_prime_UTR
TTAGGCTGGGTAATGTTGTG+AGG 0.639436 5_1:+9936440 Msa0716490:CDS
ACAATACTGAAGTTCATAGA+GGG 0.642789 5_1:+9935632 Msa0716490:CDS
AAGTAAAGGATCCAAATGCA+CGG 0.650077 5_1:-9936666 None:intergenic
GTGAACGAGACACTTAGGCT+GGG 0.659344 5_1:+9936427 Msa0716490:CDS
AGTTACATCTGAGTCAGACA+TGG 0.671062 5_1:-9934513 None:intergenic
AGAATCAAAAGAATGCAAGA+GGG 0.675343 5_1:+9935668 Msa0716490:CDS
GGGTTGGTGGTGCAGAACAA+TGG 0.686914 5_1:+9939285 Msa0716490:intron
AAAGGTTATGATATTCCATG+TGG 0.690985 5_1:+9936617 Msa0716490:intron
AGAGGGAAATGAGAATTCGG+AGG 0.702791 5_1:+9935685 Msa0716490:CDS
CTACTAGGTAGCATGGCATG+TGG 0.707998 5_1:-9939609 None:intergenic
AAGGTTATGATATTCCATGT+GGG 0.740085 5_1:+9936618 Msa0716490:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTATATTAAAAAAA+AGG - chr5_1:9936244-9936263 None:intergenic 0.0%
!! AAAAATTATATAAAAAATAA+AGG + chr5_1:9937909-9937928 Msa0716490:intron 0.0%
!! AAAATTATATAAAAAATAAA+GGG + chr5_1:9937910-9937929 Msa0716490:intron 0.0%
!! ACTAAATATAATAACAAAAT+GGG - chr5_1:9935475-9935494 None:intergenic 10.0%
!! CAATATCAAAATAAAAATAT+GGG - chr5_1:9936817-9936836 None:intergenic 10.0%
!! TTAAACATTATGTAATTATT+AGG + chr5_1:9936936-9936955 Msa0716490:intron 10.0%
!! GAATAAAAATAATAAGTAAT+AGG + chr5_1:9936973-9936992 Msa0716490:intron 10.0%
!! ATAAAAATAATAAGTAATAG+GGG + chr5_1:9936975-9936994 Msa0716490:intron 10.0%
!! TATTATATTGATGTTAATAT+TGG + chr5_1:9939264-9939283 Msa0716490:intron 10.0%
!! ATTATATTGATGTTAATATT+GGG + chr5_1:9939265-9939284 Msa0716490:intron 10.0%
!!! TACAATCTTTTTTTTTTTTT+TGG + chr5_1:9940057-9940076 Msa0716490:three_prime_UTR 10.0%
!!! ACAATCTTTTTTTTTTTTTT+GGG + chr5_1:9940058-9940077 Msa0716490:three_prime_UTR 10.0%
!!! ATTTTGTAGTTAGATTAAAA+GGG - chr5_1:9934790-9934809 None:intergenic 15.0%
!!! AATTTTGTAGTTAGATTAAA+AGG - chr5_1:9934791-9934810 None:intergenic 15.0%
!!! ATTTACAAATCAAATTTGTT+TGG + chr5_1:9934829-9934848 Msa0716490:CDS 15.0%
!! CTAAATATAATAACAAAATG+GGG - chr5_1:9935474-9935493 None:intergenic 15.0%
!! CACTAAATATAATAACAAAA+TGG - chr5_1:9935476-9935495 None:intergenic 15.0%
!! GTCATAAATGATAAATAAAT+TGG + chr5_1:9936204-9936223 Msa0716490:intron 15.0%
!! ATAAATGATAAATAAATTGG+AGG + chr5_1:9936207-9936226 Msa0716490:intron 15.0%
!! TAAATGATAAATAAATTGGA+GGG + chr5_1:9936208-9936227 Msa0716490:intron 15.0%
!! CCAATATCAAAATAAAAATA+TGG - chr5_1:9936818-9936837 None:intergenic 15.0%
!!! CCATATTTTTATTTTGATAT+TGG + chr5_1:9936815-9936834 Msa0716490:intron 15.0%
!! ATTATGTAATTATTAGGAAA+AGG + chr5_1:9936942-9936961 Msa0716490:intron 15.0%
!! TTATGTAATTATTAGGAAAA+GGG + chr5_1:9936943-9936962 Msa0716490:intron 15.0%
!! TACATTCTTATAATAATGTT+AGG + chr5_1:9938980-9938999 Msa0716490:intron 15.0%
!! ACATTCTTATAATAATGTTA+GGG + chr5_1:9938981-9939000 Msa0716490:intron 15.0%
!! ACATCAATATAATATTCAAA+TGG - chr5_1:9939258-9939277 None:intergenic 15.0%
!! ATATATAAAATGTACAATGT+GGG - chr5_1:9939968-9939987 None:intergenic 15.0%
!! AATATATAAAATGTACAATG+TGG - chr5_1:9939969-9939988 None:intergenic 15.0%
!! TTCAAAGCAAAACAAAAAAA+TGG - chr5_1:9934443-9934462 None:intergenic 20.0%
!!! AAGATAAACTAAAGTTTGTT+TGG + chr5_1:9935236-9935255 Msa0716490:intron 20.0%
!!! TTATGTTTAGTTTTTTACTG+TGG + chr5_1:9936073-9936092 Msa0716490:intron 20.0%
!! AAATGATAAATAAATTGGAG+GGG + chr5_1:9936209-9936228 Msa0716490:intron 20.0%
!! ATAGAGAATAGTTATAGTAA+AGG + chr5_1:9936572-9936591 Msa0716490:intron 20.0%
!! TAGAGAATAGTTATAGTAAA+GGG + chr5_1:9936573-9936592 Msa0716490:intron 20.0%
!! TATGTAATTATTAGGAAAAG+GGG + chr5_1:9936944-9936963 Msa0716490:intron 20.0%
!! AATAACAAATTTAAGTGCTT+GGG - chr5_1:9937003-9937022 None:intergenic 20.0%
!!! AAAATTTGGTTCACTTTTAA+GGG + chr5_1:9937076-9937095 Msa0716490:intron 20.0%
!! AATAATTTATAGTTAGCTAG+GGG - chr5_1:9937393-9937412 None:intergenic 20.0%
!! GAATAATTTATAGTTAGCTA+GGG - chr5_1:9937394-9937413 None:intergenic 20.0%
!! TGAATAATTTATAGTTAGCT+AGG - chr5_1:9937395-9937414 None:intergenic 20.0%
!! AACTATAAATTATTCAGTGT+TGG + chr5_1:9937399-9937418 Msa0716490:intron 20.0%
!! ACTATAAATTATTCAGTGTT+GGG + chr5_1:9937400-9937419 Msa0716490:intron 20.0%
!!! AAAGTTTCAATTTAGAATCT+GGG + chr5_1:9937718-9937737 Msa0716490:intron 20.0%
!!! TAAAAGAGGGTTTAATTTTT+GGG - chr5_1:9937847-9937866 None:intergenic 20.0%
!!! TCATCATAATAACATCTTTT+GGG - chr5_1:9938373-9938392 None:intergenic 20.0%
!!! ATCATCATAATAACATCTTT+TGG - chr5_1:9938374-9938393 None:intergenic 20.0%
!! AAAAAATAAAAGAGAAAAGG+TGG - chr5_1:9938503-9938522 None:intergenic 20.0%
!! TGGAAAAAATAAAAGAGAAA+AGG - chr5_1:9938506-9938525 None:intergenic 20.0%
!! ATATGATCATATTATAGAGT+GGG - chr5_1:9939535-9939554 None:intergenic 20.0%
!!! TCTTTTTCTTAGTTATAGAA+TGG - chr5_1:9939589-9939608 None:intergenic 20.0%
!!! ATATATATAGCATTTTGTGT+TGG + chr5_1:9939636-9939655 Msa0716490:three_prime_UTR 20.0%
!!! TATGATTTGAAGATACTTTT+AGG + chr5_1:9939829-9939848 Msa0716490:three_prime_UTR 20.0%
!!! ATGATTTGAAGATACTTTTA+GGG + chr5_1:9939830-9939849 Msa0716490:three_prime_UTR 20.0%
!! TTTATTTGTATTATTATCCC+AGG + chr5_1:9939987-9940006 Msa0716490:three_prime_UTR 20.0%
!!! TTCGGTTTTTTTCACTTTAA+AGG + chr5_1:9934332-9934351 Msa0716490:five_prime_UTR 25.0%
!! TTAAGACCAGACAATTTTTA+AGG + chr5_1:9934483-9934502 Msa0716490:five_prime_UTR 25.0%
! TACAACTATAGGAAAATTCA+TGG + chr5_1:9934688-9934707 Msa0716490:CDS 25.0%
! CTAACTACAAAATTATATGC+AGG + chr5_1:9934797-9934816 Msa0716490:intron 25.0%
! TACAAAATTATATGCAGGTA+TGG + chr5_1:9934802-9934821 Msa0716490:intron 25.0%
!! TACAAATCAAATTTGTTTGG+TGG + chr5_1:9934832-9934851 Msa0716490:CDS 25.0%
! AGGTTCATATTACAAAATGA+AGG + chr5_1:9934889-9934908 Msa0716490:CDS 25.0%
! GGTTCATATTACAAAATGAA+GGG + chr5_1:9934890-9934909 Msa0716490:CDS 25.0%
!!! GAGTATGTTACTTTTATGAA+AGG + chr5_1:9935346-9935365 Msa0716490:CDS 25.0%
! TTAGTGCATGTTTAATTACA+CGG + chr5_1:9935490-9935509 Msa0716490:intron 25.0%
! ACATCGACAAATATAATTAG+TGG - chr5_1:9935963-9935982 None:intergenic 25.0%
!! TTTTACTGTGGAAAAACAAT+AGG + chr5_1:9936085-9936104 Msa0716490:intron 25.0%
!! AAATCTCTTTTGTGAGAAAA+AGG + chr5_1:9936547-9936566 Msa0716490:intron 25.0%
! AGAGAATAGTTATAGTAAAG+GGG + chr5_1:9936574-9936593 Msa0716490:intron 25.0%
!! ATTCTTTTTGTGTTTGTGAA+AGG + chr5_1:9936599-9936618 Msa0716490:intron 25.0%
!! ATGTTACTTATCAAGTAGAA+AGG - chr5_1:9936737-9936756 None:intergenic 25.0%
! ATGTAATTATTAGGAAAAGG+GGG + chr5_1:9936945-9936964 Msa0716490:intron 25.0%
! ATAACAAATTTAAGTGCTTG+GGG - chr5_1:9937002-9937021 None:intergenic 25.0%
! CAATAACAAATTTAAGTGCT+TGG - chr5_1:9937004-9937023 None:intergenic 25.0%
!!! AGCACTTAAATTTGTTATTG+TGG + chr5_1:9937004-9937023 Msa0716490:intron 25.0%
!!! ACTTAAATTTGTTATTGTGG+TGG + chr5_1:9937007-9937026 Msa0716490:intron 25.0%
!!! CAAAATTTGGTTCACTTTTA+AGG + chr5_1:9937075-9937094 Msa0716490:intron 25.0%
! CAAAAATGTAACTTCGTATA+GGG + chr5_1:9937112-9937131 Msa0716490:intron 25.0%
!!! TAAAAGTGTTCTATAGCTAT+AGG - chr5_1:9937322-9937341 None:intergenic 25.0%
! CAGATTCTAAATTGAAACTT+TGG - chr5_1:9937719-9937738 None:intergenic 25.0%
!! CAAAGTTTCAATTTAGAATC+TGG + chr5_1:9937717-9937736 Msa0716490:intron 25.0%
!! TATATCTCAATCGAGATTTT+TGG + chr5_1:9937804-9937823 Msa0716490:intron 25.0%
!!! GTAAAAGAGGGTTTAATTTT+TGG - chr5_1:9937848-9937867 None:intergenic 25.0%
! TACAATGAATAGTGTAACTT+TGG + chr5_1:9938187-9938206 Msa0716490:intron 25.0%
!!! CTCTTTTATTTTTTCCATCA+TGG + chr5_1:9938509-9938528 Msa0716490:intron 25.0%
! AGAGTTTAAGTCAGTTAATT+AGG + chr5_1:9938596-9938615 Msa0716490:intron 25.0%
!! AGAAGTGAGTTTTTATGTTA+GGG - chr5_1:9938708-9938727 None:intergenic 25.0%
! CTCACACACATTTATTTATT+AGG + chr5_1:9938726-9938745 Msa0716490:intron 25.0%
! TTGATTACATAAGATTAGTG+CGG + chr5_1:9938757-9938776 Msa0716490:intron 25.0%
!! GTATTAAGATTGATGATTTC+TGG - chr5_1:9938884-9938903 None:intergenic 25.0%
! TCTTATAATAATGTTAGGGA+AGG + chr5_1:9938985-9939004 Msa0716490:intron 25.0%
!! TTTTATAGTTGGAGTAATCT+TGG + chr5_1:9939041-9939060 Msa0716490:intron 25.0%
!!! AACACTTCAGATTTTAGTAT+AGG - chr5_1:9939133-9939152 None:intergenic 25.0%
! TATTGATGTTAATATTGGGT+TGG + chr5_1:9939269-9939288 Msa0716490:intron 25.0%
!! AGTAATATTTTCTTACCGTT+TGG + chr5_1:9939342-9939361 Msa0716490:CDS 25.0%
! GATATGATCATATTATAGAG+TGG - chr5_1:9939536-9939555 None:intergenic 25.0%
! GCTATATATATATAGCTACT+AGG - chr5_1:9939627-9939646 None:intergenic 25.0%
! TTAATTATAGATGATCGATC+AGG - chr5_1:9939714-9939733 None:intergenic 25.0%
!! TTACACCGAATTTTGAATTT+TGG - chr5_1:9939779-9939798 None:intergenic 25.0%
!! CGTTTTCCTAAAAAAATATG+CGG - chr5_1:9939802-9939821 None:intergenic 25.0%
!!! TTTTTTTAGGAAAACGATTC+AGG + chr5_1:9939806-9939825 Msa0716490:three_prime_UTR 25.0%
GCTTAACCTTAAAAATTGTC+TGG - chr5_1:9934492-9934511 None:intergenic 30.0%
AGCATGACACAAAAAATTGA+GGG - chr5_1:9935019-9935038 None:intergenic 30.0%
TAGCATGACACAAAAAATTG+AGG - chr5_1:9935020-9935039 None:intergenic 30.0%
TAGAACACATCTATTGAAAG+AGG + chr5_1:9935044-9935063 Msa0716490:CDS 30.0%
!! GCAGTTCACATTTAATTTGA+TGG + chr5_1:9935267-9935286 Msa0716490:intron 30.0%
AAACTCTTTCGCTAAAATCA+CGG - chr5_1:9935523-9935542 None:intergenic 30.0%
!! TGATTTTAGCGAAAGAGTTT+GGG + chr5_1:9935523-9935542 Msa0716490:intron 30.0%
! AAAGAGTTTGGGTTTGTATT+TGG + chr5_1:9935534-9935553 Msa0716490:intron 30.0%
AACAAACATATGTAAGAGTC+AGG - chr5_1:9935591-9935610 None:intergenic 30.0%
ACAATACTGAAGTTCATAGA+GGG + chr5_1:9935632-9935651 Msa0716490:CDS 30.0%
AAGAATCAAAAGAATGCAAG+AGG + chr5_1:9935667-9935686 Msa0716490:CDS 30.0%
AGAATCAAAAGAATGCAAGA+GGG + chr5_1:9935668-9935687 Msa0716490:CDS 30.0%
! AGGAAAATGATCTTTTGAAC+TGG + chr5_1:9935705-9935724 Msa0716490:CDS 30.0%
! GGAAAATGATCTTTTGAACT+GGG + chr5_1:9935706-9935725 Msa0716490:CDS 30.0%
AAAGTAAATAGCTAGAGCTA+TGG - chr5_1:9935819-9935838 None:intergenic 30.0%
TCAAGCTATACTACAATTGA+GGG + chr5_1:9935853-9935872 Msa0716490:CDS 30.0%
TTGGGAAGACTACAAAAAAA+TGG + chr5_1:9936163-9936182 Msa0716490:intron 30.0%
TCTGTTGTGAACACTTTAAA+GGG - chr5_1:9936303-9936322 None:intergenic 30.0%
TTCTGTTGTGAACACTTTAA+AGG - chr5_1:9936304-9936323 None:intergenic 30.0%
!! TAGTTTGCTCATATTTGTAC+AGG + chr5_1:9936402-9936421 Msa0716490:intron 30.0%
AAAGGTTATGATATTCCATG+TGG + chr5_1:9936617-9936636 Msa0716490:intron 30.0%
AAGGTTATGATATTCCATGT+GGG + chr5_1:9936618-9936637 Msa0716490:intron 30.0%
TGTAATTATTAGGAAAAGGG+GGG + chr5_1:9936946-9936965 Msa0716490:intron 30.0%
!! TAAATTTGTTATTGTGGTGG+TGG + chr5_1:9937010-9937029 Msa0716490:intron 30.0%
! CCTATACGAAGTTACATTTT+TGG - chr5_1:9937114-9937133 None:intergenic 30.0%
CCAAAAATGTAACTTCGTAT+AGG + chr5_1:9937111-9937130 Msa0716490:intron 30.0%
TTGTTGTGTTCTTTCAAAGT+AGG - chr5_1:9937165-9937184 None:intergenic 30.0%
! ACACAACAAGTTTTTACGTT+TGG + chr5_1:9937176-9937195 Msa0716490:intron 30.0%
! GATTACTGTTAATGTTGACT+TGG + chr5_1:9937295-9937314 Msa0716490:intron 30.0%
AGTGATAGTAATTAGTGACT+AGG + chr5_1:9937623-9937642 Msa0716490:intron 30.0%
TCAACTATATCTCACAATAG+AGG + chr5_1:9937653-9937672 Msa0716490:intron 30.0%
GAATCTGGGTTATTACTATT+AGG + chr5_1:9937732-9937751 Msa0716490:intron 30.0%
AGGGATACAAATAATGAGAA+TGG + chr5_1:9937929-9937948 Msa0716490:intron 30.0%
AACACGATGTATTTCTCTTT+GGG - chr5_1:9937972-9937991 None:intergenic 30.0%
TAACACGATGTATTTCTCTT+TGG - chr5_1:9937973-9937992 None:intergenic 30.0%
TATGCGCATGTTTCAAATTA+GGG - chr5_1:9938235-9938254 None:intergenic 30.0%
ATATGCGCATGTTTCAAATT+AGG - chr5_1:9938236-9938255 None:intergenic 30.0%
CATATAGATAGGATCTTTAG+TGG + chr5_1:9938251-9938270 Msa0716490:intron 30.0%
TATCATATTAGAGCACAAAG+TGG - chr5_1:9938661-9938680 None:intergenic 30.0%
! AAGTGAGTTTTTATGTTAGG+GGG - chr5_1:9938706-9938725 None:intergenic 30.0%
! GAAGTGAGTTTTTATGTTAG+GGG - chr5_1:9938707-9938726 None:intergenic 30.0%
! GAGAAGTGAGTTTTTATGTT+AGG - chr5_1:9938709-9938728 None:intergenic 30.0%
! AATATTTTCTTACCGTTTGG+AGG + chr5_1:9939345-9939364 Msa0716490:CDS 30.0%
AGAATTAGCAAAGCTTGAAA+TGG + chr5_1:9939392-9939411 Msa0716490:CDS 30.0%
ATCTCATTCTCAACTACAAT+TGG + chr5_1:9939430-9939449 Msa0716490:CDS 30.0%
TCTCATTCTCAACTACAATT+GGG + chr5_1:9939431-9939450 Msa0716490:CDS 30.0%
! CCTTTAGGAAAATCAACAAA+AGG - chr5_1:9939492-9939511 None:intergenic 30.0%
!!! CCTTTTGTTGATTTTCCTAA+AGG + chr5_1:9939489-9939508 Msa0716490:CDS 30.0%
GAATGGATGATCTAACTAAT+TGG - chr5_1:9939572-9939591 None:intergenic 30.0%
! ATAGCATTTTGTGTTGGATT+TGG + chr5_1:9939642-9939661 Msa0716490:three_prime_UTR 30.0%
!!! TTTGAATTTTGGCTGCTAAT+CGG - chr5_1:9939768-9939787 None:intergenic 30.0%
AGCAGCCAAAATTCAAAATT+CGG + chr5_1:9939771-9939790 Msa0716490:three_prime_UTR 30.0%
!!! GTGTAACCGCATATTTTTTT+AGG + chr5_1:9939793-9939812 Msa0716490:three_prime_UTR 30.0%
AACCAATCAATTGAAGTACA+AGG + chr5_1:9939864-9939883 Msa0716490:three_prime_UTR 30.0%
ACCAATCAATTGAAGTACAA+GGG + chr5_1:9939865-9939884 Msa0716490:three_prime_UTR 30.0%
AAGAAAACGGATAATGAAAG+TGG - chr5_1:9939904-9939923 None:intergenic 30.0%
ATAAAATGTACAATGTGGGT+GGG - chr5_1:9939964-9939983 None:intergenic 30.0%
TATAAAATGTACAATGTGGG+TGG - chr5_1:9939965-9939984 None:intergenic 30.0%
TAATAGTAGATTACAGTCCT+GGG - chr5_1:9940007-9940026 None:intergenic 30.0%
GATTGTACACAATAGATAAC+TGG - chr5_1:9940044-9940063 None:intergenic 30.0%
! CTTATAAAAGCACACCCTAT+TGG + chr5_1:9934366-9934385 Msa0716490:five_prime_UTR 35.0%
ATGAATGTGTGAAGCCAATA+GGG - chr5_1:9934383-9934402 None:intergenic 35.0%
AATGAATGTGTGAAGCCAAT+AGG - chr5_1:9934384-9934403 None:intergenic 35.0%
CCAATAGTTTCTCCAATGAA+AGG - chr5_1:9934647-9934666 None:intergenic 35.0%
CCTTTCATTGGAGAAACTAT+TGG + chr5_1:9934644-9934663 Msa0716490:CDS 35.0%
CCTATAGTTGTAGCAGAATA+AGG - chr5_1:9934680-9934699 None:intergenic 35.0%
CCTTATTCTGCTACAACTAT+AGG + chr5_1:9934677-9934696 Msa0716490:CDS 35.0%
TGTAGTTATCCAAGTAGCAT+TGG + chr5_1:9934925-9934944 Msa0716490:CDS 35.0%
!!! GAAATGGTCTATGTTGGTTT+TGG + chr5_1:9934960-9934979 Msa0716490:CDS 35.0%
AGCTCAAGATGAAGCTAAAA+AGG + chr5_1:9935122-9935141 Msa0716490:CDS 35.0%
ACATTATGAGTCTTCAACCT+GGG + chr5_1:9935296-9935315 Msa0716490:CDS 35.0%
!! GTGATTTTAGCGAAAGAGTT+TGG + chr5_1:9935522-9935541 Msa0716490:intron 35.0%
TGGGTTTGTATTTGGTATCA+CGG + chr5_1:9935542-9935561 Msa0716490:intron 35.0%
CACAATACTGAAGTTCATAG+AGG + chr5_1:9935631-9935650 Msa0716490:CDS 35.0%
GAAGTTCATAGAGGGTAAAA+TGG + chr5_1:9935640-9935659 Msa0716490:CDS 35.0%
CTAGCTATTTACTTTCTTCC+TGG + chr5_1:9935824-9935843 Msa0716490:CDS 35.0%
CTCAATTGTAGTATAGCTTG+AGG - chr5_1:9935854-9935873 None:intergenic 35.0%
CTCAAGCTATACTACAATTG+AGG + chr5_1:9935852-9935871 Msa0716490:CDS 35.0%
GTGTTTGTGTTCATACTTCA+TGG - chr5_1:9935908-9935927 None:intergenic 35.0%
TATTTGTCGATGTTGTGCTT+CGG + chr5_1:9935970-9935989 Msa0716490:intron 35.0%
CTTAAAGATGTTCGGTACAA+AGG + chr5_1:9936481-9936500 Msa0716490:CDS 35.0%
AAGTAAAGGATCCAAATGCA+CGG - chr5_1:9936669-9936688 None:intergenic 35.0%
! TGAGGTTGGTCAAAAAGTAA+AGG - chr5_1:9936683-9936702 None:intergenic 35.0%
!! ATGGATTAAAGTGTTGAGGT+TGG - chr5_1:9936697-9936716 None:intergenic 35.0%
AACCTCAACACTTTAATCCA+TGG + chr5_1:9936696-9936715 Msa0716490:CDS 35.0%
AACACTTTAATCCATGGAGA+TGG + chr5_1:9936702-9936721 Msa0716490:CDS 35.0%
TTGAACGATCACCAATGTAT+CGG - chr5_1:9936780-9936799 None:intergenic 35.0%
GTGTGGTTGTGAACAAAATT+TGG + chr5_1:9937062-9937081 Msa0716490:intron 35.0%
CTTGTGTACGTTATGTTGTT+CGG - chr5_1:9937217-9937236 None:intergenic 35.0%
!! CTGAAGCTCTAAATCTTTAG+TGG + chr5_1:9937363-9937382 Msa0716490:intron 35.0%
ACAATAGAGGATCAAGTACA+TGG + chr5_1:9937666-9937685 Msa0716490:intron 35.0%
CAATAGAGGATCAAGTACAT+GGG + chr5_1:9937667-9937686 Msa0716490:intron 35.0%
! TAATGAGAATGGACTTGACT+CGG + chr5_1:9937940-9937959 Msa0716490:intron 35.0%
TCGTGTTAAATCAGTCTAGA+TGG + chr5_1:9937985-9938004 Msa0716490:intron 35.0%
TGAAACATGCGCATATAGAT+AGG + chr5_1:9938240-9938259 Msa0716490:intron 35.0%
! TGAAGTGTCATAATCAACGA+TGG + chr5_1:9938309-9938328 Msa0716490:intron 35.0%
! GAAGTGTCATAATCAACGAT+GGG + chr5_1:9938310-9938329 Msa0716490:intron 35.0%
TGTTGTGAACAGTAGTACTA+CGG + chr5_1:9938335-9938354 Msa0716490:intron 35.0%
! ATTATGATGATGAGCAAGCA+TGG + chr5_1:9938383-9938402 Msa0716490:intron 35.0%
AATTAATGACCTGGAAACTC+AGG - chr5_1:9938437-9938456 None:intergenic 35.0%
ATGGGCATTAATTAATGACC+TGG - chr5_1:9938446-9938465 None:intergenic 35.0%
GTCATTAATTAATGCCCATG+TGG + chr5_1:9938447-9938466 Msa0716490:intron 35.0%
ATGTACATATGTAGCCAAGT+GGG + chr5_1:9938790-9938809 Msa0716490:intron 35.0%
!! TTATCACTTTTCTTCCCACT+TGG - chr5_1:9938807-9938826 None:intergenic 35.0%
! GGTTTTTACTGCATGAGATA+TGG - chr5_1:9939013-9939032 None:intergenic 35.0%
TCATGCAGTAAAAACCACAT+CGG + chr5_1:9939017-9939036 Msa0716490:intron 35.0%
CTTGGCTGTCTAATTAAGAT+CGG + chr5_1:9939059-9939078 Msa0716490:intron 35.0%
!! CTGAAGTGTTTGCTTTTGAT+CGG + chr5_1:9939143-9939162 Msa0716490:intron 35.0%
!! TGATGTTAATATTGGGTTGG+TGG + chr5_1:9939272-9939291 Msa0716490:intron 35.0%
GTGCAGAACAATGGTAATAA+TGG + chr5_1:9939294-9939313 Msa0716490:intron 35.0%
! ACTCTAATTTGTAGGCCTTT+AGG - chr5_1:9939507-9939526 None:intergenic 35.0%
! ATCATATTATAGAGTGGGCT+TGG - chr5_1:9939530-9939549 None:intergenic 35.0%
TATATAGCTACTAGGTAGCA+TGG - chr5_1:9939619-9939638 None:intergenic 35.0%
GAAATCTAATAGAGCCTAGA+GGG - chr5_1:9939929-9939948 None:intergenic 35.0%
TGAAATCTAATAGAGCCTAG+AGG - chr5_1:9939930-9939949 None:intergenic 35.0%
TAAAATGTACAATGTGGGTG+GGG - chr5_1:9939963-9939982 None:intergenic 35.0%
GTAATAGTAGATTACAGTCC+TGG - chr5_1:9940008-9940027 None:intergenic 35.0%
AGTTACATCTGAGTCAGACA+TGG - chr5_1:9934516-9934535 None:intergenic 40.0%
TGGAAGATTAAGCTTGGGTT+TGG - chr5_1:9934606-9934625 None:intergenic 40.0%
TAATCTTCCACCAGGAAGAA+TGG + chr5_1:9934616-9934635 Msa0716490:CDS 40.0%
AATCTTCCACCAGGAAGAAT+GGG + chr5_1:9934617-9934636 Msa0716490:CDS 40.0%
TCATGGAACAACACATAGCA+AGG + chr5_1:9934705-9934724 Msa0716490:CDS 40.0%
GCATCTGCTGAAACTATTGT+TGG - chr5_1:9934859-9934878 None:intergenic 40.0%
ACAATAGTTTCAGCAGATGC+AGG + chr5_1:9934859-9934878 Msa0716490:CDS 40.0%
! AGTTATCCAAGTAGCATTGG+TGG + chr5_1:9934928-9934947 Msa0716490:CDS 40.0%
AGTATTCCACCAATGCTACT+TGG - chr5_1:9934937-9934956 None:intergenic 40.0%
!! AGTAGCATTGGTGGAATACT+TGG + chr5_1:9934937-9934956 Msa0716490:CDS 40.0%
!! GTAGCATTGGTGGAATACTT+GGG + chr5_1:9934938-9934957 Msa0716490:CDS 40.0%
TTGGTGGAATACTTGGGAAA+TGG + chr5_1:9934944-9934963 Msa0716490:CDS 40.0%
ACTTGGGAAATGGTCTATGT+TGG + chr5_1:9934954-9934973 Msa0716490:CDS 40.0%
!!! TGGTCTATGTTGGTTTTGGT+TGG + chr5_1:9934964-9934983 Msa0716490:CDS 40.0%
TTCATCTTGAGCTGCAAATG+TGG - chr5_1:9935115-9935134 None:intergenic 40.0%
CACATTATGAGTCTTCAACC+TGG + chr5_1:9935295-9935314 Msa0716490:CDS 40.0%
! TTCTCTGTCTCTATTTTCCC+AGG - chr5_1:9935316-9935335 None:intergenic 40.0%
! TCAGCACCATTGAATTTTCC+TGG + chr5_1:9935376-9935395 Msa0716490:CDS 40.0%
GCAGTTCCAGGAAAATTCAA+TGG - chr5_1:9935385-9935404 None:intergenic 40.0%
! ATTTTCCTGGAACTGCTTAC+TGG + chr5_1:9935389-9935408 Msa0716490:CDS 40.0%
!! TGCTTACTGGAGAGCATTAA+AGG + chr5_1:9935402-9935421 Msa0716490:CDS 40.0%
GCAAGAGGGAAATGAGAATT+CGG + chr5_1:9935682-9935701 Msa0716490:CDS 40.0%
!! AATTAGTGGTGTTGACGTGT+CGG - chr5_1:9935949-9935968 None:intergenic 40.0%
!!! TGTTTCCCCTGCTAGTTTTT+TGG - chr5_1:9936135-9936154 None:intergenic 40.0%
ATGTTGTGAGGTTCCTTCAT+AGG + chr5_1:9936452-9936471 Msa0716490:CDS 40.0%
! CTTTAAGAGCCTTCCTATGA+AGG - chr5_1:9936468-9936487 None:intergenic 40.0%
GGAAGGCTCTTAAAGATGTT+CGG + chr5_1:9936473-9936492 Msa0716490:CDS 40.0%
GTTATGATATTCCATGTGGG+TGG + chr5_1:9936621-9936640 Msa0716490:CDS 40.0%
!! CTCCATGGATTAAAGTGTTG+AGG - chr5_1:9936701-9936720 None:intergenic 40.0%
TTCAAAGGAAAGCCCAAGTA+GGG - chr5_1:9937041-9937060 None:intergenic 40.0%
GTGTTGGGTCAACAATCATT+TGG + chr5_1:9937415-9937434 Msa0716490:intron 40.0%
TCTCTCTCAACCAATGCTTA+TGG + chr5_1:9937464-9937483 Msa0716490:intron 40.0%
ATTCCTTGAGCCATAAGCAT+TGG - chr5_1:9937477-9937496 None:intergenic 40.0%
TTGAAACTTTGGCACATGCA+TGG - chr5_1:9937708-9937727 None:intergenic 40.0%
! ACCCTCTTTTACAATACCTG+AGG + chr5_1:9937856-9937875 Msa0716490:intron 40.0%
! GCCTCAGGTATTGTAAAAGA+GGG - chr5_1:9937860-9937879 None:intergenic 40.0%
!! AAAATAGCTTTGTACGCCTC+AGG - chr5_1:9937875-9937894 None:intergenic 40.0%
! AATGAGAATGGACTTGACTC+GGG + chr5_1:9937941-9937960 Msa0716490:intron 40.0%
CAACCCAACAAGTTTGTGTA+CGG + chr5_1:9938047-9938066 Msa0716490:intron 40.0%
! TGTCCGTACACAAACTTGTT+GGG - chr5_1:9938053-9938072 None:intergenic 40.0%
ATGTCCGTACACAAACTTGT+TGG - chr5_1:9938054-9938073 None:intergenic 40.0%
TAGGATCTTTAGTGGTTAGC+AGG + chr5_1:9938259-9938278 Msa0716490:intron 40.0%
GTAGTACTACGGATGTATGT+AGG + chr5_1:9938346-9938365 Msa0716490:intron 40.0%
ATTAATGCCCATGTGGAAAG+TGG + chr5_1:9938454-9938473 Msa0716490:intron 40.0%
TTAATGCCCATGTGGAAAGT+GGG + chr5_1:9938455-9938474 Msa0716490:intron 40.0%
TTTCCATCATGGTCCTAACT+TGG + chr5_1:9938520-9938539 Msa0716490:intron 40.0%
! TGACACGTATTGACCAAGTT+AGG - chr5_1:9938536-9938555 None:intergenic 40.0%
CATGTACATATGTAGCCAAG+TGG + chr5_1:9938789-9938808 Msa0716490:intron 40.0%
!! AGATTGATGATTTCTGGTGC+TGG - chr5_1:9938878-9938897 None:intergenic 40.0%
TGACTACATATGACAACTCG+AGG - chr5_1:9938926-9938945 None:intergenic 40.0%
CATCGAATCATGACACATGA+AGG - chr5_1:9938951-9938970 None:intergenic 40.0%
CATGCAGTAAAAACCACATC+GGG + chr5_1:9939018-9939037 Msa0716490:intron 40.0%
!! ACCACATCGGGTTTTATAGT+TGG + chr5_1:9939030-9939049 Msa0716490:intron 40.0%
TCCAACTATAAAACCCGATG+TGG - chr5_1:9939034-9939053 None:intergenic 40.0%
!! AGTGTTTGCTTTTGATCGGA+TGG + chr5_1:9939147-9939166 Msa0716490:intron 40.0%
!! TTTGCTTTTGATCGGATGGT+CGG + chr5_1:9939151-9939170 Msa0716490:intron 40.0%
! ATTTTCTTACCGTTTGGAGG+AGG + chr5_1:9939348-9939367 Msa0716490:CDS 40.0%
GCCCTTGTACTTCAATTGAT+TGG - chr5_1:9939869-9939888 None:intergenic 40.0%
! AAGTACAAGGGCATGTCAAT+AGG + chr5_1:9939877-9939896 Msa0716490:three_prime_UTR 40.0%
CCTGGTGGAAGATTAAGCTT+GGG - chr5_1:9934611-9934630 None:intergenic 45.0%
TCCTGGTGGAAGATTAAGCT+TGG - chr5_1:9934612-9934631 None:intergenic 45.0%
!! AGAATGGGTTGGCCTTTCAT+TGG + chr5_1:9934632-9934651 Msa0716490:CDS 45.0%
CAGCAGATGCAGGATTGAAT+AGG + chr5_1:9934869-9934888 Msa0716490:CDS 45.0%
TCCAAGAGCTCACAACAAGA+CGG - chr5_1:9935083-9935102 None:intergenic 45.0%
! TCTTGTTGTGAGCTCTTGGA+AGG + chr5_1:9935083-9935102 Msa0716490:CDS 45.0%
AGAGGGAAATGAGAATTCGG+AGG + chr5_1:9935685-9935704 Msa0716490:CDS 45.0%
! ATTCTCAGCTTGCTCTTTGC+TGG + chr5_1:9935773-9935792 Msa0716490:CDS 45.0%
AGTATAGCTTGAGGACAACC+AGG - chr5_1:9935845-9935864 None:intergenic 45.0%
CCAGAGCCAAAAAACTAGCA+GGG + chr5_1:9936126-9936145 Msa0716490:intron 45.0%
CAGAGCCAAAAAACTAGCAG+GGG + chr5_1:9936127-9936146 Msa0716490:intron 45.0%
! AGGGGAAACAGAACTGACTT+GGG + chr5_1:9936145-9936164 Msa0716490:intron 45.0%
AGGTTGTGAACGAGACACTT+AGG + chr5_1:9936422-9936441 Msa0716490:intron 45.0%
TTAGGCTGGGTAATGTTGTG+AGG + chr5_1:9936440-9936459 Msa0716490:CDS 45.0%
TGTGAGGTTCCTTCATAGGA+AGG + chr5_1:9936456-9936475 Msa0716490:CDS 45.0%
CTTTAATCCATGGAGATGGC+AGG + chr5_1:9936706-9936725 Msa0716490:CDS 45.0%
AAGCACGCAAACCGATACAT+TGG + chr5_1:9936766-9936785 Msa0716490:intron 45.0%
GTCGACACATCAGTGATTCT+TGG - chr5_1:9936864-9936883 None:intergenic 45.0%
CTTCAAAGGAAAGCCCAAGT+AGG - chr5_1:9937042-9937061 None:intergenic 45.0%
CTACTTGGGCTTTCCTTTGA+AGG + chr5_1:9937040-9937059 Msa0716490:intron 45.0%
GTTCACAACCACACCTTCAA+AGG - chr5_1:9937056-9937075 None:intergenic 45.0%
CATAACGTACACAAGCTGCA+CGG + chr5_1:9937222-9937241 Msa0716490:intron 45.0%
CAACCAATGCTTATGGCTCA+AGG + chr5_1:9937471-9937490 Msa0716490:intron 45.0%
CTTTGGCACATGCATGGAAA+GGG - chr5_1:9937702-9937721 None:intergenic 45.0%
ACTTTGGCACATGCATGGAA+AGG - chr5_1:9937703-9937722 None:intergenic 45.0%
! CGCCTCAGGTATTGTAAAAG+AGG - chr5_1:9937861-9937880 None:intergenic 45.0%
TGACCAAGTTAGGACCATGA+TGG - chr5_1:9938526-9938545 None:intergenic 45.0%
AGAGCACAAAGTGGTTAGTG+CGG - chr5_1:9938652-9938671 None:intergenic 45.0%
CATATGACAACTCGAGGCTA+AGG - chr5_1:9938920-9938939 None:intergenic 45.0%
TTGCCAGATGCACTTGAGTT+TGG - chr5_1:9939321-9939340 None:intergenic 45.0%
AATCTTGGTCCTCCTCCAAA+CGG - chr5_1:9939360-9939379 None:intergenic 45.0%
TCTGATCCTGCGCATAATCT+TGG - chr5_1:9939375-9939394 None:intergenic 45.0%
! GGGCTTGGACTCTAATTTGT+AGG - chr5_1:9939515-9939534 None:intergenic 45.0%
! ATCCGTTTTCTTCTCCCTCT+AGG + chr5_1:9939912-9939931 Msa0716490:three_prime_UTR 45.0%
AGCCTAGAGGGAGAAGAAAA+CGG - chr5_1:9939917-9939936 None:intergenic 45.0%
!! AATAAAAATAATAAGTAATA+GGG + chr5_1:9936974-9936993 Msa0716490:intron 5.0%
CCCAAGCTTAATCTTCCACC+AGG + chr5_1:9934608-9934627 Msa0716490:CDS 50.0%
TTCCACCAGGAAGAATGGGT+TGG + chr5_1:9934621-9934640 Msa0716490:CDS 50.0%
AAAGGCCAACCCATTCTTCC+TGG - chr5_1:9934629-9934648 None:intergenic 50.0%
GCCAGAGCCAAAAAACTAGC+AGG + chr5_1:9936125-9936144 Msa0716490:intron 50.0%
!!! CCCTGCTAGTTTTTTGGCTC+TGG - chr5_1:9936129-9936148 None:intergenic 50.0%
CAGGGGAAACAGAACTGACT+TGG + chr5_1:9936144-9936163 Msa0716490:intron 50.0%
TGTGAACGAGACACTTAGGC+TGG + chr5_1:9936426-9936445 Msa0716490:CDS 50.0%
GTGAACGAGACACTTAGGCT+GGG + chr5_1:9936427-9936446 Msa0716490:CDS 50.0%
ATGTGGGTGGAAAGTCCTTC+CGG + chr5_1:9936634-9936653 Msa0716490:CDS 50.0%
AAATGCACGGCTGCAATGAC+CGG - chr5_1:9936656-9936675 None:intergenic 50.0%
AAAGGAAAGCCCAAGTAGGG+AGG - chr5_1:9937038-9937057 None:intergenic 50.0%
! TGGGCTTTCCTTTGAAGGTG+TGG + chr5_1:9937045-9937064 Msa0716490:intron 50.0%
CTTCAGAGCATGTGCATTGG+TGG - chr5_1:9937349-9937368 None:intergenic 50.0%
GAGCTTCAGAGCATGTGCAT+TGG - chr5_1:9937352-9937371 None:intergenic 50.0%
CATGCATGGAAAGGGATGGA+CGG - chr5_1:9937694-9937713 None:intergenic 50.0%
! GTGGTTAGCAGGCATTGCAT+TGG + chr5_1:9938270-9938289 Msa0716490:intron 50.0%
ATGGCCATTGTGTGAACGTG+TGG + chr5_1:9938402-9938421 Msa0716490:intron 50.0%
TGGCCATTGTGTGAACGTGT+GGG + chr5_1:9938403-9938422 Msa0716490:intron 50.0%
GATATGCACGTGCAAGTGAG+AGG - chr5_1:9938481-9938500 None:intergenic 50.0%
!! GATGATTTCTGGTGCTGGAG+TGG - chr5_1:9938873-9938892 None:intergenic 50.0%
CTACTAGGTAGCATGGCATG+TGG - chr5_1:9939612-9939631 None:intergenic 50.0%
! GCCGTCTTGTTGTGAGCTCT+TGG + chr5_1:9935079-9935098 Msa0716490:CDS 55.0%
GCTCTCCAGTAAGCAGTTCC+AGG - chr5_1:9935397-9935416 None:intergenic 55.0%
GGAAGGACTTTCCACCCACA+TGG - chr5_1:9936635-9936654 None:intergenic 55.0%
GGTCATTGCAGCCGTGCATT+TGG + chr5_1:9936655-9936674 Msa0716490:CDS 55.0%
GGACTAACCTGCCATCTCCA+TGG - chr5_1:9936716-9936735 None:intergenic 55.0%
!! GTGGTGGATCCTCCCTACTT+GGG + chr5_1:9937026-9937045 Msa0716490:intron 55.0%
GGCACATGCATGGAAAGGGA+TGG - chr5_1:9937698-9937717 None:intergenic 55.0%
CTGCCCACACGTTCACACAA+TGG - chr5_1:9938409-9938428 None:intergenic 55.0%
GAGAGGCCCACTTTCCACAT+GGG - chr5_1:9938464-9938483 None:intergenic 55.0%
TGAGAGGCCCACTTTCCACA+TGG - chr5_1:9938465-9938484 None:intergenic 55.0%
!! TCTGGTGCTGGAGTGGACTA+TGG - chr5_1:9938866-9938885 None:intergenic 55.0%
!! GGGTTGGTGGTGCAGAACAA+TGG + chr5_1:9939285-9939304 Msa0716490:intron 55.0%
GGAGGACCAAGATTATGCGC+AGG + chr5_1:9939366-9939385 Msa0716490:CDS 55.0%
GTACAATGTGGGTGGGGTAG+TGG - chr5_1:9939957-9939976 None:intergenic 55.0%
GGCCAACCCATTCTTCCTGG+TGG - chr5_1:9934626-9934645 None:intergenic 60.0%
! GACGTGTCGGTGTCTGTGTC+TGG - chr5_1:9935936-9935955 None:intergenic 60.0%
!! GGTGGTGGATCCTCCCTACT+TGG + chr5_1:9937025-9937044 Msa0716490:intron 60.0%
TGTGTGAACGTGTGGGCAGC+AGG + chr5_1:9938410-9938429 Msa0716490:intron 60.0%
GCAGCAGGTCCTGAGTTTCC+AGG + chr5_1:9938425-9938444 Msa0716490:intron 60.0%
GCACGGCTGCAATGACCGGA+AGG - chr5_1:9936652-9936671 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 9934318 9940149 9934318 ID=Msa0716490;Name=Msa0716490
chr5_1 mRNA 9934318 9940149 9934318 ID=Msa0716490-mRNA-1;Parent=Msa0716490;Name=Msa0716490-mRNA-1;_AED=0.06;_eAED=0.06;_QI=197|0.83|1|1|1|1|7|601|458
chr5_1 exon 9934318 9934726 9934318 ID=Msa0716490-mRNA-1:exon:3975;Parent=Msa0716490-mRNA-1
chr5_1 exon 9934819 9935143 9934819 ID=Msa0716490-mRNA-1:exon:3976;Parent=Msa0716490-mRNA-1
chr5_1 exon 9935271 9935423 9935271 ID=Msa0716490-mRNA-1:exon:3977;Parent=Msa0716490-mRNA-1
chr5_1 exon 9935623 9935874 9935623 ID=Msa0716490-mRNA-1:exon:3978;Parent=Msa0716490-mRNA-1
chr5_1 exon 9936424 9936502 9936424 ID=Msa0716490-mRNA-1:exon:3979;Parent=Msa0716490-mRNA-1
chr5_1 exon 9936621 9936727 9936621 ID=Msa0716490-mRNA-1:exon:3980;Parent=Msa0716490-mRNA-1
chr5_1 exon 9939300 9940149 9939300 ID=Msa0716490-mRNA-1:exon:3981;Parent=Msa0716490-mRNA-1
chr5_1 five_prime_UTR 9934318 9934514 9934318 ID=Msa0716490-mRNA-1:five_prime_utr;Parent=Msa0716490-mRNA-1
chr5_1 CDS 9934515 9934726 9934515 ID=Msa0716490-mRNA-1:cds;Parent=Msa0716490-mRNA-1
chr5_1 CDS 9934819 9935143 9934819 ID=Msa0716490-mRNA-1:cds;Parent=Msa0716490-mRNA-1
chr5_1 CDS 9935271 9935423 9935271 ID=Msa0716490-mRNA-1:cds;Parent=Msa0716490-mRNA-1
chr5_1 CDS 9935623 9935874 9935623 ID=Msa0716490-mRNA-1:cds;Parent=Msa0716490-mRNA-1
chr5_1 CDS 9936424 9936502 9936424 ID=Msa0716490-mRNA-1:cds;Parent=Msa0716490-mRNA-1
chr5_1 CDS 9936621 9936727 9936621 ID=Msa0716490-mRNA-1:cds;Parent=Msa0716490-mRNA-1
chr5_1 CDS 9939300 9939548 9939300 ID=Msa0716490-mRNA-1:cds;Parent=Msa0716490-mRNA-1
chr5_1 three_prime_UTR 9939549 9940149 9939549 ID=Msa0716490-mRNA-1:three_prime_utr;Parent=Msa0716490-mRNA-1
Gene Sequence

>Msa0716490

ATGTCTGACTCAGATGTAACTTTCTATTTTCTTTCTTCAATTCTTTCTCTTCTCATCTTCATTTTCTTTCTCATCAAAACAAAACATGCCAAACCCAAGCTTAATCTTCCACCAGGAAGAATGGGTTGGCCTTTCATTGGAGAAACTATTGGTTACTTGAAGCCTTATTCTGCTACAACTATAGGAAAATTCATGGAACAACACATAGCAAGGTATGGTAAAATTTACAAATCAAATTTGTTTGGTGGACCAACAATAGTTTCAGCAGATGCAGGATTGAATAGGTTCATATTACAAAATGAAGGGAAATTATTTGAGTGTAGTTATCCAAGTAGCATTGGTGGAATACTTGGGAAATGGTCTATGTTGGTTTTGGTTGGTGACATGCATAGAGACATGCGTAATATATCCCTCAATTTTTTGTGTCATGCTAGACTTAGAACACATCTATTGAAAGAGGTTGAGAAACATAGCCGTCTTGTTGTGAGCTCTTGGAAGGAAAAAACCACATTTGCAGCTCAAGATGAAGCTAAAAAGTTCACATTTAATTTGATGGCAGAACACATTATGAGTCTTCAACCTGGGAAAATAGAGACAGAGAACTTAAAGAAAGAGTATGTTACTTTTATGAAAGGTGTTGTATCAGCACCATTGAATTTTCCTGGAACTGCTTACTGGAGAGCATTAAAGTCAAGATGCACAATACTGAAGTTCATAGAGGGTAAAATGGAAGAAAGAATCAAAAGAATGCAAGAGGGAAATGAGAATTCGGAGGAAAATGATCTTTTGAACTGGGTTTTAAAACATTCAAATCTTTCAACAGAGCAAATTCTTGACTTGATTCTCAGCTTGCTCTTTGCTGGTCATGAAACTTCATCTGTTTCCATAGCTCTAGCTATTTACTTTCTTCCTGGTTGTCCTCAAGCTATACTACAATTGAGGGTTGTGAACGAGACACTTAGGCTGGGTAATGTTGTGAGGTTCCTTCATAGGAAGGCTCTTAAAGATGTTCGGTACAAAGGTTATGATATTCCATGTGGGTGGAAAGTCCTTCCGGTCATTGCAGCCGTGCATTTGGATCCTTTACTTTTTGACCAACCTCAACACTTTAATCCATGGAGATGGCAGAACAATGGTAATAATGGACCAAACTCAAGTGCATCTGGCAATAGTAATATTTTCTTACCGTTTGGAGGAGGACCAAGATTATGCGCAGGATCAGAATTAGCAAAGCTTGAAATGGCTGTTTTCATTCATCATCTCATTCTCAACTACAATTGGGAATTAACTGATAATAACGATCAAGCTTTTGCATATCCTTTTGTTGATTTTCCTAAAGGCCTACAAATTAGAGTCCAAGCCCACTCTATAATATGA
Protein sequence

>Msa0716490

MSDSDVTFYFLSSILSLLIFIFFLIKTKHAKPKLNLPPGRMGWPFIGETIGYLKPYSATTIGKFMEQHIARYGKIYKSNLFGGPTIVSADAGLNRFILQNEGKLFECSYPSSIGGILGKWSMLVLVGDMHRDMRNISLNFLCHARLRTHLLKEVEKHSRLVVSSWKEKTTFAAQDEAKKFTFNLMAEHIMSLQPGKIETENLKKEYVTFMKGVVSAPLNFPGTAYWRALKSRCTILKFIEGKMEERIKRMQEGNENSEENDLLNWVLKHSNLSTEQILDLILSLLFAGHETSSVSIALAIYFLPGCPQAILQLRVVNETLRLGNVVRFLHRKALKDVRYKGYDIPCGWKVLPVIAAVHLDPLLFDQPQHFNPWRWQNNGNNGPNSSASGNSNIFLPFGGGPRLCAGSELAKLEMAVFIHHLILNYNWELTDNNDQAFAYPFVDFPKGLQIRVQAHSII*