AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0837470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837470 MtrunA17_Chr5g0403931 90.184 489 11 2 1 458 1 483 0.0 897
Msa0837470 MtrunA17_Chr8g0373441 75.735 408 63 3 1 376 1 404 0.0 619
Msa0837470 MtrunA17_Chr7g0226771 38.641 471 247 6 13 453 10 468 2.51e-120 360
Msa0837470 MtrunA17_Chr3g0113321 38.621 435 228 6 33 437 26 451 1.18e-103 317
Msa0837470 MtrunA17_Chr8g0341951 33.542 480 266 9 10 453 8 470 8.73e-91 283
Msa0837470 MtrunA17_Chr6g0478161 32.135 473 283 7 6 450 23 485 2.47e-88 278
Msa0837470 MtrunA17_Chr8g0372411 31.858 452 256 7 37 452 40 475 5.16e-85 269
Msa0837470 MtrunA17_Chr5g0397971 32.075 477 274 9 11 452 6 467 2.69e-83 265
Msa0837470 MtrunA17_Chr6g0455461 31.809 481 273 9 8 454 4 463 5.24e-79 253
Msa0837470 MtrunA17_Chr3g0078411 30.977 481 277 8 8 454 4 463 5.35e-79 253
Msa0837470 MtrunA17_Chr7g0219961 32.892 453 249 10 36 455 33 463 1.06e-75 244
Msa0837470 MtrunA17_Chr5g0443401 30.165 484 284 10 11 457 13 479 5.32e-69 227
Msa0837470 MtrunA17_Chr8g0380471 30.977 481 279 12 11 453 9 474 2.10e-65 218
Msa0837470 MtrunA17_Chr5g0408181 29.959 484 272 12 5 450 4 458 1.62e-64 215
Msa0837470 MtrunA17_Chr2g0293421 29.730 444 262 7 22 428 31 461 2.87e-63 212
Msa0837470 MtrunA17_Chr8g0369791 30.143 491 275 13 1 452 1 462 4.75e-63 211
Msa0837470 MtrunA17_Chr1g0153371 30.670 463 272 10 3 433 2 447 5.57e-60 203
Msa0837470 MtrunA17_Chr5g0443731 30.227 440 265 6 28 434 21 451 2.91e-59 201
Msa0837470 MtrunA17_Chr8g0381541 30.485 433 248 10 36 428 43 462 2.72e-58 199
Msa0837470 MtrunA17_Chr8g0381571 30.465 430 246 10 36 425 43 459 5.12e-58 198
Msa0837470 MtrunA17_Chr3g0089361 30.269 446 255 10 25 433 29 455 1.39e-57 197
Msa0837470 MtrunA17_Chr4g0044851 29.913 458 261 10 30 451 33 466 2.63e-57 196
Msa0837470 MtrunA17_Chr2g0293411 28.817 465 270 9 14 428 7 460 1.08e-56 195
Msa0837470 MtrunA17_Chr3g0107511 27.778 486 302 8 10 456 7 482 5.07e-55 190
Msa0837470 MtrunA17_Chr4g0044841 29.764 467 274 11 20 451 21 468 1.49e-54 189
Msa0837470 MtrunA17_Chr8g0388921 28.221 489 293 11 9 455 5 477 2.16e-53 186
Msa0837470 MtrunA17_Chr5g0400421 28.795 448 272 8 35 446 44 480 5.28e-53 185
Msa0837470 MtrunA17_Chr3g0107501 26.316 456 291 6 35 455 32 477 1.05e-52 184
Msa0837470 MtrunA17_Chr1g0164371 29.560 477 284 9 11 452 14 473 1.82e-52 183
Msa0837470 MtrunA17_Chr3g0089351 28.316 392 229 7 75 433 1 373 8.86e-50 174
Msa0837470 MtrunA17_Chr8g0339861 26.667 495 283 15 5 442 2 473 5.25e-47 169
Msa0837470 MtrunA17_Chr5g0400411 29.630 432 253 9 35 428 44 462 2.77e-46 167
Msa0837470 MtrunA17_Chr3g0141801 25.268 467 286 9 10 433 15 461 4.63e-46 166
Msa0837470 MtrunA17_Chr8g0372711 28.802 434 248 11 38 431 48 460 1.41e-43 159
Msa0837470 MtrunA17_Chr5g0404881 32.579 221 144 3 13 230 10 228 3.14e-39 141
Msa0837470 MtrunA17_Chr5g0436981 39.873 158 93 1 31 188 23 178 3.91e-39 140
Msa0837470 MtrunA17_Chr8g0380931 25.322 466 259 13 20 429 47 479 1.22e-38 146
Msa0837470 MtrunA17_Chr5g0404861 42.958 142 72 2 315 456 28 160 3.88e-34 125
Msa0837470 MtrunA17_Chr5g0437001 48.148 108 50 1 315 422 7 108 4.82e-31 117
Msa0837470 MtrunA17_Chr8g0381551 29.592 294 192 8 36 319 43 331 1.97e-29 117
Msa0837470 MtrunA17_Chr8g0373431 69.565 69 20 1 390 458 2 69 5.19e-28 105
Msa0837470 MtrunA17_Chr8g0381561 41.593 113 57 1 313 425 7 110 8.03e-26 102
Msa0837470 MtrunA17_Chr1g0161671 24.841 314 215 9 16 317 11 315 5.08e-25 105
Msa0837470 MtrunA17_Chr4g0000171 27.000 300 181 10 36 315 43 324 2.93e-24 103
Msa0837470 MtrunA17_Chr4g0000151 40.157 127 66 3 315 441 12 128 1.22e-23 96.7
Msa0837470 MtrunA17_Chr3g0089291 25.210 238 164 5 75 307 1 229 1.38e-19 87.8
Msa0837470 MtrunA17_Chr3g0101601 23.967 484 293 15 5 431 2 467 1.27e-18 88.2
Msa0837470 MtrunA17_Chr5g0436991 34.965 143 88 3 174 315 18 156 2.00e-18 82.4
Msa0837470 MtrunA17_Chr0c19g0493771 27.230 213 126 4 243 429 411 620 2.30e-18 88.2
Msa0837470 MtrunA17_Chr4g0000161 25.172 290 199 8 36 315 43 324 1.28e-17 84.0
Msa0837470 MtrunA17_Chr3g0101621 23.480 477 294 13 5 429 2 459 2.27e-17 84.3
Msa0837470 MtrunA17_Chr1g0160851 23.567 471 278 16 19 429 17 465 2.95e-17 84.0
Msa0837470 MtrunA17_Chr6g0463541 39.796 98 49 2 339 436 4 91 8.29e-17 76.3
Msa0837470 MtrunA17_Chr4g0047641 23.958 480 290 15 13 431 21 486 2.02e-16 81.6
Msa0837470 MtrunA17_Chr7g0215181 26.642 274 154 7 215 450 240 504 3.26e-16 80.9
Msa0837470 MtrunA17_Chr4g0013471 24.925 333 192 12 36 350 43 335 3.53e-16 80.1
Msa0837470 MtrunA17_Chr1g0160861 28.205 234 131 5 227 429 79 306 1.09e-15 78.2
Msa0837470 MtrunA17_Chr1g0205361 23.431 478 292 16 7 429 7 465 1.26e-15 79.0
Msa0837470 MtrunA17_Chr5g0395381 23.260 503 281 19 5 451 8 461 3.20e-15 77.8
Msa0837470 MtrunA17_Chr5g0396521 25.620 242 128 7 240 429 301 542 4.02e-15 77.8
Msa0837470 MtrunA17_Chr6g0457421 26.236 263 152 7 220 450 250 502 6.69e-15 77.0
Msa0837470 MtrunA17_Chr7g0246151 26.038 265 151 7 229 456 245 501 6.83e-15 76.6
Msa0837470 MtrunA17_Chr5g0395321 23.031 508 295 19 10 451 9 486 9.92e-15 76.3
Msa0837470 MtrunA17_Chr7g0265611 29.018 224 120 5 243 432 270 488 9.95e-15 76.3
Msa0837470 MtrunA17_Chr1g0161641 40.476 84 41 1 342 425 13 87 2.67e-14 68.2
Msa0837470 MtrunA17_Chr5g0431511 21.166 463 275 16 36 431 33 472 9.75e-14 73.2
Msa0837470 MtrunA17_Chr1g0174431 31.034 145 86 2 315 445 58 202 1.08e-13 70.1
Msa0837470 MtrunA17_Chr1g0161651 24.510 306 179 9 10 268 13 313 1.31e-13 71.6
Msa0837470 MtrunA17_Chr1g0174471 23.265 245 151 4 237 447 269 510 2.19e-13 72.0
Msa0837470 MtrunA17_Chr8g0336361 33.333 126 78 3 315 439 421 541 3.62e-13 71.6
Msa0837470 MtrunA17_Chr1g0161661 37.838 74 37 1 358 431 12 76 5.57e-13 65.1
Msa0837470 MtrunA17_Chr2g0314781 35.606 132 78 3 315 445 42 167 6.66e-13 67.0
Msa0837470 MtrunA17_Chr5g0401681 23.469 490 277 18 6 428 2 460 7.33e-13 70.5
Msa0837470 MtrunA17_Chr1g0203141 25.463 216 121 5 249 430 280 489 8.00e-13 70.5
Msa0837470 MtrunA17_Chr1g0174451 24.569 232 139 4 234 432 251 479 9.92e-13 70.1
Msa0837470 MtrunA17_Chr4g0035921 21.694 484 304 16 7 429 12 481 1.00e-12 70.1
Msa0837470 MtrunA17_Chr5g0405001 20.859 489 297 12 10 431 18 483 1.06e-12 70.1
Msa0837470 MtrunA17_Chr1g0203151 25.238 210 118 4 255 430 281 485 1.21e-12 69.7
Msa0837470 MtrunA17_Chr2g0288661 24.837 306 163 10 168 430 211 492 1.46e-12 69.7
Msa0837470 MtrunA17_Chr4g0004601 28.311 219 123 7 240 432 297 507 1.50e-12 69.7
Msa0837470 MtrunA17_Chr8g0354531 26.838 272 151 10 202 432 357 621 1.92e-12 69.3
Msa0837470 MtrunA17_Chr2g0313801 28.111 217 108 7 243 430 293 490 1.95e-12 69.3
Msa0837470 MtrunA17_Chr8g0355961 23.829 491 296 15 1 431 4 476 2.24e-12 68.9
Msa0837470 MtrunA17_Chr8g0356001 23.171 492 298 16 1 431 4 476 2.70e-12 68.6
Msa0837470 MtrunA17_Chr5g0401691 23.467 473 289 13 9 428 25 477 3.15e-12 68.6
Msa0837470 MtrunA17_Chr1g0200961 24.846 487 270 20 10 429 8 465 3.16e-12 68.6
Msa0837470 MtrunA17_Chr2g0313791 26.606 327 182 11 163 458 209 508 3.55e-12 68.2
Msa0837470 MtrunA17_Chr4g0058231 26.016 246 136 6 225 429 229 469 4.13e-12 68.2
Msa0837470 MtrunA17_Chr5g0400391 41.429 70 32 1 359 428 1 61 4.18e-12 62.8
Msa0837470 MtrunA17_Chr8g0361471 20.833 480 300 16 13 429 7 469 4.33e-12 68.2
Msa0837470 MtrunA17_Chr1g0197891 25.514 486 270 21 10 432 10 466 4.81e-12 67.8
Msa0837470 MtrunA17_Chr7g0235551 33.898 118 77 1 315 431 361 478 5.15e-12 67.8
Msa0837470 MtrunA17_Chr2g0313781 27.134 328 179 12 163 458 226 525 5.59e-12 67.8
Msa0837470 MtrunA17_Chr8g0382901 21.868 439 283 13 35 432 27 446 6.50e-12 68.2
Msa0837470 MtrunA17_Chr1g0197851 24.793 484 273 22 14 432 9 466 8.48e-12 67.0
Msa0837470 MtrunA17_Chr1g0197881 25.052 483 272 22 14 432 9 465 9.10e-12 67.0
Msa0837470 MtrunA17_Chr4g0053621 22.887 485 284 17 8 428 6 464 1.04e-11 67.0
Msa0837470 MtrunA17_Chr7g0246181 27.402 281 152 9 217 456 232 501 1.38e-11 66.6
Msa0837470 MtrunA17_Chr1g0174441 24.336 226 132 5 239 429 276 497 1.47e-11 66.6
Msa0837470 MtrunA17_Chr2g0313771 25.652 230 129 5 243 446 300 513 2.22e-11 65.9
Msa0837470 MtrunA17_Chr7g0258211 22.495 489 305 15 3 429 4 480 2.25e-11 65.9
Msa0837470 MtrunA17_Chr4g0058191 24.895 237 141 5 225 429 227 458 2.85e-11 65.5
Msa0837470 MtrunA17_Chr7g0235261 25.751 233 137 7 240 445 276 499 2.94e-11 65.5
Msa0837470 MtrunA17_Chr1g0174481 21.721 244 154 4 238 447 249 489 2.97e-11 65.5
Msa0837470 MtrunA17_Chr8g0354571 26.609 233 125 8 239 432 275 500 3.11e-11 65.5
Msa0837470 MtrunA17_Chr1g0174461 22.081 471 278 16 9 410 6 456 3.33e-11 65.5
Msa0837470 MtrunA17_Chr3g0116741 25.131 191 111 3 271 434 303 488 4.33e-11 65.1
Msa0837470 MtrunA17_Chr4g0020041 22.667 225 133 4 243 431 253 472 4.83e-11 64.7
Msa0837470 MtrunA17_Chr2g0313811 27.273 231 128 7 229 430 283 502 7.07e-11 64.3
Msa0837470 MtrunA17_Chr8g0362481 25.112 223 129 5 243 432 192 409 8.77e-11 63.9
Msa0837470 MtrunA17_Chr2g0313821 25.837 209 113 5 248 430 298 490 9.11e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837470 AT3G50660.1 65.975 482 108 4 26 452 29 509 0.0 639
Msa0837470 AT3G50660.2 66.832 404 82 2 26 377 29 432 0.0 551
Msa0837470 AT5G05690.1 38.018 434 228 6 34 437 29 451 2.34e-101 311
Msa0837470 AT5G14400.2 34.670 424 256 4 41 453 1 414 2.63e-99 304
Msa0837470 AT1G73340.1 33.617 470 274 7 12 452 17 477 2.26e-93 291
Msa0837470 AT5G14400.3 35.427 398 237 3 41 427 1 389 3.04e-93 287
Msa0837470 AT4G36380.1 34.725 455 245 8 36 452 69 509 1.56e-89 282
Msa0837470 AT1G12740.1 32.577 485 265 10 14 453 1 468 3.65e-87 275
Msa0837470 AT1G12740.2 32.106 489 268 10 14 453 1 474 2.42e-85 270
Msa0837470 AT1G12740.4 32.179 491 265 11 14 453 1 474 8.27e-85 268
Msa0837470 AT3G13730.1 33.111 450 256 6 37 453 52 489 1.57e-84 268
Msa0837470 AT5G05690.2 37.632 380 202 5 34 383 29 403 4.34e-84 264
Msa0837470 AT3G13730.2 33.886 422 236 5 37 425 52 463 6.58e-83 263
Msa0837470 AT5G14400.4 33.939 330 189 1 41 341 1 330 1.98e-72 232
Msa0837470 AT5G14400.1 31.707 369 231 4 96 453 2 360 3.85e-72 232
Msa0837470 AT1G55940.2 30.364 494 280 12 11 457 18 494 4.21e-72 236
Msa0837470 AT3G30180.1 31.140 456 260 8 33 455 31 465 1.08e-71 234
Msa0837470 AT5G38970.1 30.921 456 261 7 33 455 31 465 2.76e-71 233
Msa0837470 AT1G55940.1 30.736 462 257 11 11 425 18 463 5.63e-69 227
Msa0837470 AT3G44970.1 31.398 465 259 10 30 452 27 473 6.74e-69 227
Msa0837470 AT4G19230.1 30.642 483 271 13 5 450 2 457 2.10e-67 223
Msa0837470 AT4G19230.2 30.271 479 270 13 5 446 2 453 1.21e-64 216
Msa0837470 AT5G45340.1 29.228 479 281 10 8 453 7 460 3.14e-63 212
Msa0837470 AT5G05690.3 34.311 341 183 6 127 437 3 332 1.12e-62 207
Msa0837470 AT5G45340.2 29.095 464 271 10 8 438 7 445 4.14e-61 206
Msa0837470 AT3G19270.2 29.012 486 278 10 14 457 8 468 9.31e-61 206
Msa0837470 AT1G78490.1 28.776 490 284 12 11 452 1 473 4.00e-60 204
Msa0837470 AT1G05160.2 31.702 429 243 11 36 426 45 461 7.92e-60 204
Msa0837470 AT1G05160.1 31.702 429 243 11 36 426 45 461 7.92e-60 204
Msa0837470 AT1G12740.3 32.479 351 191 7 28 341 23 364 1.91e-58 196
Msa0837470 AT5G48000.2 28.112 466 273 11 30 452 27 473 4.62e-58 199
Msa0837470 AT5G48000.4 28.112 466 273 11 30 452 27 473 4.62e-58 199
Msa0837470 AT5G48000.7 28.112 466 273 11 30 452 27 473 4.62e-58 199
Msa0837470 AT5G48000.6 28.112 466 273 11 30 452 27 473 4.62e-58 199
Msa0837470 AT5G48000.5 28.112 466 273 11 30 452 27 473 4.62e-58 199
Msa0837470 AT5G48000.3 28.112 466 273 11 30 452 27 473 4.62e-58 199
Msa0837470 AT3G19270.1 29.167 456 256 10 14 427 8 438 7.67e-58 197
Msa0837470 AT5G48000.1 28.112 466 273 11 30 452 68 514 2.66e-57 197
Msa0837470 AT2G42850.1 29.712 451 268 10 36 452 45 480 6.26e-56 193
Msa0837470 AT5G38970.3 30.851 376 215 5 33 375 31 394 2.85e-55 189
Msa0837470 AT5G36110.1 27.790 457 283 9 35 456 33 477 1.56e-54 189
Msa0837470 AT5G38970.2 28.822 399 235 6 90 455 2 384 2.39e-54 186
Msa0837470 AT5G38970.4 28.822 399 235 6 90 455 2 384 2.39e-54 186
Msa0837470 AT4G36380.2 30.994 342 196 4 36 341 69 406 4.16e-53 184
Msa0837470 AT2G29090.2 27.655 452 277 7 33 452 46 479 5.20e-53 185
Msa0837470 AT2G29090.1 27.655 452 277 7 33 452 46 479 5.20e-53 185
Msa0837470 AT2G32440.2 27.742 465 276 10 15 431 11 463 2.35e-52 184
Msa0837470 AT2G32440.1 27.742 465 276 10 15 431 11 463 2.35e-52 184
Msa0837470 AT4G15393.2 26.141 482 299 11 8 452 5 466 7.82e-52 182
Msa0837470 AT1G19630.1 26.681 461 281 11 31 452 30 472 3.33e-48 172
Msa0837470 AT1G65670.1 25.835 449 279 9 8 421 5 434 6.97e-48 171
Msa0837470 AT4G15396.1 25.873 487 296 14 8 452 5 468 1.83e-47 170
Msa0837470 AT4G15300.3 24.638 483 289 13 23 456 5 461 7.31e-47 168
Msa0837470 AT4G15300.2 24.638 483 289 13 23 456 15 471 8.38e-47 168
Msa0837470 AT4G15396.3 26.754 456 271 12 8 421 5 439 1.31e-46 167
Msa0837470 AT1G78490.2 28.502 414 239 10 11 376 1 405 8.56e-46 164
Msa0837470 AT1G19630.3 26.437 435 264 10 31 427 30 446 1.41e-44 162
Msa0837470 AT4G15310.1 26.263 495 301 15 4 456 2 474 6.02e-42 155
Msa0837470 AT4G15396.2 25.373 469 300 15 8 452 5 447 2.69e-41 153
Msa0837470 AT2G29090.3 27.723 404 234 9 86 452 2 384 2.85e-41 151
Msa0837470 AT4G15300.1 23.016 504 293 15 23 456 5 483 1.25e-39 149
Msa0837470 AT3G30290.1 24.402 418 262 11 74 456 3 401 2.43e-38 144
Msa0837470 AT4G15393.1 24.816 407 257 8 8 377 5 399 6.12e-37 140
Msa0837470 AT1G19630.2 25.389 386 242 9 31 378 30 407 1.37e-35 137
Msa0837470 AT2G42850.2 29.023 348 210 6 36 350 45 388 1.49e-34 133
Msa0837470 AT4G15396.4 24.331 411 254 10 8 376 5 400 2.40e-33 130
Msa0837470 AT5G36110.2 26.571 350 220 7 35 350 33 379 1.92e-32 127
Msa0837470 AT3G44970.2 30.132 302 190 7 30 320 27 318 4.62e-32 126
Msa0837470 AT4G15393.3 23.096 407 231 8 8 377 5 366 1.97e-29 119
Msa0837470 AT5G36140.1 26.182 275 200 3 35 308 32 304 8.76e-27 110
Msa0837470 AT2G29090.4 24.390 287 207 5 33 317 46 324 3.88e-22 97.8
Msa0837470 AT4G12300.1 23.395 483 286 18 10 431 22 481 4.15e-21 96.3
Msa0837470 AT1G31800.1 28.571 245 131 6 226 429 300 541 2.73e-19 91.3
Msa0837470 AT5G57220.1 24.744 489 296 16 18 455 14 481 3.66e-19 90.5
Msa0837470 AT5G36130.1 32.168 143 87 2 315 456 7 140 4.76e-19 84.0
Msa0837470 AT5G36220.1 26.653 484 268 19 11 432 10 468 5.47e-17 83.6
Msa0837470 AT4G12320.1 21.739 483 300 15 10 433 22 485 9.22e-17 83.2
Msa0837470 AT1G66540.2 27.632 228 120 5 236 428 69 286 8.29e-16 78.6
Msa0837470 AT1G66540.1 27.632 228 120 5 236 428 128 345 1.49e-15 78.6
Msa0837470 AT5G67310.1 23.482 494 291 16 10 447 19 481 1.84e-15 79.0
Msa0837470 AT4G37410.1 23.469 392 225 12 91 428 89 459 2.09e-15 79.0
Msa0837470 AT3G20950.1 20.886 474 317 9 9 429 15 483 4.12e-15 77.8
Msa0837470 AT2G26710.1 23.856 306 192 5 168 446 214 505 6.57e-15 77.4
Msa0837470 AT5G04330.1 26.230 244 137 6 227 431 235 474 1.48e-14 76.3
Msa0837470 AT5G52320.2 23.184 358 216 10 131 433 126 479 1.89e-14 75.9
Msa0837470 AT5G52320.1 23.184 358 216 10 131 433 126 479 1.97e-14 75.9
Msa0837470 AT4G37400.1 24.156 385 231 11 91 428 89 459 2.86e-14 75.1
Msa0837470 AT4G15110.1 25.620 242 128 8 240 429 309 550 4.30e-14 75.1
Msa0837470 AT5G24910.1 23.922 255 150 5 237 452 280 529 4.36e-14 74.7
Msa0837470 AT4G37370.1 23.699 346 210 8 127 428 122 457 4.49e-14 74.7
Msa0837470 AT2G26170.2 26.230 244 128 9 221 425 175 405 8.43e-14 73.6
Msa0837470 AT3G28740.1 23.410 346 211 8 127 428 131 466 9.25e-14 73.6
Msa0837470 AT5G47990.1 22.356 416 255 11 70 427 72 477 1.63e-13 72.8
Msa0837470 AT5G06905.1 20.534 487 316 12 12 435 7 485 2.98e-13 72.0
Msa0837470 AT4G37360.1 29.714 175 86 3 281 428 294 458 3.49e-13 72.0
Msa0837470 AT5G24900.2 22.222 252 153 5 239 452 161 407 6.59e-13 70.5
Msa0837470 AT4G37340.1 27.273 220 121 5 237 428 250 458 9.95e-13 70.5
Msa0837470 AT5G24900.1 22.222 252 153 5 239 452 278 524 1.00e-12 70.5
Msa0837470 AT4G37330.1 23.495 515 286 23 13 458 13 488 1.09e-12 70.5
Msa0837470 AT1G50520.1 22.521 484 306 12 3 427 7 480 1.31e-12 70.1
Msa0837470 AT3G26310.1 21.649 485 297 15 8 431 4 466 2.64e-12 69.3
Msa0837470 AT4G22710.1 25.000 220 123 6 243 428 276 487 1.05e-11 67.4
Msa0837470 AT3G26330.1 21.729 451 282 16 37 431 32 467 1.15e-11 67.0
Msa0837470 AT4G22690.1 25.000 220 123 6 243 428 307 518 1.31e-11 67.0
Msa0837470 AT5G36220.2 28.319 226 118 7 237 432 111 322 1.69e-11 65.9
Msa0837470 AT2G45570.1 25.000 224 130 5 238 429 259 476 2.33e-11 66.2
Msa0837470 AT1G50560.1 24.215 223 136 2 243 432 264 486 2.74e-11 65.9
Msa0837470 AT3G20940.1 19.523 461 314 10 20 429 26 480 3.12e-11 65.9
Msa0837470 AT3G61040.1 27.014 211 116 4 251 428 258 463 4.22e-11 65.5
Msa0837470 AT3G14630.1 27.059 255 142 8 211 430 237 482 4.49e-11 65.5
Msa0837470 AT3G14630.2 27.059 255 142 8 211 430 292 537 4.84e-11 65.5

Find 126 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATAGTTGTAGCAGAATA+AGG 0.217364 5_4:-11459927 None:intergenic
ATTCTCAGCTTGCTCTTTGC+TGG 0.257780 5_4:+11460989 Msa0837470:CDS
TGCTTACTGGAGAGCATTAA+AGG 0.272186 5_4:+11460618 Msa0837470:CDS
ACTCTAATTTGTAGGCCTTT+AGG 0.278167 5_4:-11464968 None:intergenic
GAATGGATGATCTAACTAAT+TGG 0.284868 5_4:-11465033 None:intergenic
CTAGCTATTTACTTTCTTCC+TGG 0.288114 5_4:+11461040 Msa0837470:CDS
GCAGTTCACATTTAATTTGA+TGG 0.306128 5_4:+11460483 Msa0837470:intron
AGCTCAAGATGAAGCTAAAA+AGG 0.307230 5_4:+11460364 Msa0837470:CDS
ATCTCATTCTCAACTACAAT+TGG 0.307328 5_4:+11464894 Msa0837470:CDS
CCTTTCATTGGAGAAACTAT+TGG 0.327280 5_4:+11459894 Msa0837470:CDS
GAAGTTCATAGAGGGTAAAA+TGG 0.327358 5_4:+11460856 Msa0837470:CDS
GAAATGGTCTATGTTGGTTT+TGG 0.338998 5_4:+11460202 Msa0837470:CDS
TTGCCAGATGCACTTGAGTT+TGG 0.344847 5_4:-11464782 None:intergenic
AGCAGCCAAAATTCAAAATT+CGG 0.354001 5_4:+11465225 Msa0837470:three_prime_UTR
ATTTACAAATCAAATTTGTT+TGG 0.360844 5_4:+11460071 Msa0837470:CDS
GGTCATTGCAGCCGTGCATT+TGG 0.361495 5_4:+11461865 Msa0837470:CDS
CCTTATTCTGCTACAACTAT+AGG 0.365901 5_4:+11459927 Msa0837470:CDS
GCCCTTGTACTTCAATTGAT+TGG 0.367143 5_4:-11465320 None:intergenic
GGGCTTGGACTCTAATTTGT+AGG 0.371100 5_4:-11464976 None:intergenic
ATGTTGTGAGGTTCCTTCAT+AGG 0.375245 5_4:+11461662 Msa0837470:CDS
CTTATAAAAGCACACCCTAT+TGG 0.375632 5_4:+11459616 Msa0837470:five_prime_UTR
GTGCAGAACAATGGTAATAA+TGG 0.377374 5_4:+11464758 Msa0837470:intron
AGTAGCATTGGTGGAATACT+TGG 0.379754 5_4:+11460179 Msa0837470:CDS
CAGCAGATGCAGGATTGAAT+AGG 0.381275 5_4:+11460111 Msa0837470:CDS
GCCGTCTTGTTGTGAGCTCT+TGG 0.396925 5_4:+11460321 Msa0837470:CDS
AGAATGGGTTGGCCTTTCAT+TGG 0.400700 5_4:+11459882 Msa0837470:CDS
AAAGGCCAACCCATTCTTCC+TGG 0.403386 5_4:-11459876 None:intergenic
GATTGTACACAATAGATAAC+TGG 0.405101 5_4:-11465495 None:intergenic
TCCTGGTGGAAGATTAAGCT+TGG 0.409555 5_4:-11459859 None:intergenic
TAATCTTCCACCAGGAAGAA+TGG 0.418458 5_4:+11459866 Msa0837470:CDS
ATCATATTATAGAGTGGGCT+TGG 0.422340 5_4:-11464991 None:intergenic
CCTGGTGGAAGATTAAGCTT+GGG 0.423329 5_4:-11459858 None:intergenic
TGGAAGATTAAGCTTGGGTT+TGG 0.426015 5_4:-11459853 None:intergenic
CTTTAAGAGCCTTCCTATGA+AGG 0.427448 5_4:-11461675 None:intergenic
GCTCTCCAGTAAGCAGTTCC+AGG 0.429947 5_4:-11460610 None:intergenic
AATGAATGTGTGAAGCCAAT+AGG 0.432174 5_4:-11459631 None:intergenic
AAGTACAAGGGCATGTCAAT+AGG 0.437884 5_4:+11465331 Msa0837470:three_prime_UTR
TACAAATCAAATTTGTTTGG+TGG 0.441126 5_4:+11460074 Msa0837470:CDS
TCTGATCCTGCGCATAATCT+TGG 0.442201 5_4:-11464836 None:intergenic
GTACAATGTGGGTGGGGTAG+TGG 0.442595 5_4:-11465408 None:intergenic
GGACCAAACTCAAGTGCATC+TGG 0.443054 5_4:+11464779 Msa0837470:CDS
GCATCTGCTGAAACTATTGT+TGG 0.446616 5_4:-11460098 None:intergenic
GTAATAGTAGATTACAGTCC+TGG 0.446911 5_4:-11465459 None:intergenic
GCAAGAGGGAAATGAGAATT+CGG 0.447089 5_4:+11460898 Msa0837470:CDS
AGAATTAGCAAAGCTTGAAA+TGG 0.452248 5_4:+11464856 Msa0837470:CDS
CTCAAGCTATACTACAATTG+AGG 0.453230 5_4:+11461068 Msa0837470:CDS
CACAATACTGAAGTTCATAG+AGG 0.468015 5_4:+11460847 Msa0837470:CDS
AGTATTCCACCAATGCTACT+TGG 0.474096 5_4:-11460176 None:intergenic
AAATGCACGGCTGCAATGAC+CGG 0.475595 5_4:-11461863 None:intergenic
TAGAACACATCTATTGAAAG+AGG 0.476285 5_4:+11460286 Msa0837470:CDS
AATCTTCCACCAGGAAGAAT+GGG 0.477830 5_4:+11459867 Msa0837470:CDS
TTGGTGGAATACTTGGGAAA+TGG 0.482545 5_4:+11460186 Msa0837470:CDS
TACAACTATAGGAAAATTCA+TGG 0.486204 5_4:+11459938 Msa0837470:CDS
AAATCCAAATCCAACACAAA+AGG 0.489070 5_4:-11465100 None:intergenic
AAGAATCAAAAGAATGCAAG+AGG 0.490859 5_4:+11460883 Msa0837470:CDS
GGAAGGCTCTTAAAGATGTT+CGG 0.498371 5_4:+11461683 Msa0837470:CDS
ACAATAGTTTCAGCAGATGC+AGG 0.500312 5_4:+11460101 Msa0837470:CDS
TTTATTTGTATTATTATCCC+AGG 0.501827 5_4:+11465441 Msa0837470:three_prime_UTR
ACTTGGGAAATGGTCTATGT+TGG 0.503191 5_4:+11460196 Msa0837470:CDS
AACACAAAAGGCTAGCTACT+AGG 0.505246 5_4:-11465088 None:intergenic
TCTCATTCTCAACTACAATT+GGG 0.506689 5_4:+11464895 Msa0837470:CDS
ATGAATGTGTGAAGCCAATA+GGG 0.510313 5_4:-11459630 None:intergenic
TTAATTATAGATGATCGATC+AGG 0.514959 5_4:-11465165 None:intergenic
TATAAAATGTACAATGTGGG+TGG 0.515913 5_4:-11465416 None:intergenic
AAAGTAAATAGCTAGAGCTA+TGG 0.522820 5_4:-11461032 None:intergenic
AGCCTAGAGGGAGAAGAAAA+CGG 0.530298 5_4:-11465368 None:intergenic
TGTGAACGAGACACTTAGGC+TGG 0.531377 5_4:+11461636 Msa0837470:CDS
TCTTGTTGTGAGCTCTTGGA+AGG 0.532636 5_4:+11460325 Msa0837470:CDS
CTCCATGGATTAAAGTGTTG+AGG 0.533456 5_4:-11461908 None:intergenic
CTTAAAGATGTTCGGTACAA+AGG 0.537490 5_4:+11461691 Msa0837470:CDS
TCAAGCTATACTACAATTGA+GGG 0.538319 5_4:+11461069 Msa0837470:CDS
ATAAAATGTACAATGTGGGT+GGG 0.540155 5_4:-11465415 None:intergenic
AATATATAAAATGTACAATG+TGG 0.540164 5_4:-11465420 None:intergenic
CTTTAATCCATGGAGATGGC+AGG 0.540834 5_4:+11461916 Msa0837470:CDS
AGGTTCATATTACAAAATGA+AGG 0.541377 5_4:+11460131 Msa0837470:CDS
AGTTATCCAAGTAGCATTGG+TGG 0.542541 5_4:+11460170 Msa0837470:CDS
TAAAATGTACAATGTGGGTG+GGG 0.542629 5_4:-11465414 None:intergenic
ATGTGGGTGGAAAGTCCTTC+CGG 0.546149 5_4:+11461844 Msa0837470:CDS
CCAATAGTTTCTCCAATGAA+AGG 0.546790 5_4:-11459894 None:intergenic
ATATATAAAATGTACAATGT+GGG 0.550546 5_4:-11465419 None:intergenic
CCTTTAGGAAAATCAACAAA+AGG 0.551181 5_4:-11464953 None:intergenic
TGTAGTTATCCAAGTAGCAT+TGG 0.551957 5_4:+11460167 Msa0837470:CDS
AACCAATCAATTGAAGTACA+AGG 0.553219 5_4:+11465318 Msa0837470:three_prime_UTR
GGACTAACCTGCCATCTCCA+TGG 0.558643 5_4:-11461923 None:intergenic
TAATAGTAGATTACAGTCCT+GGG 0.558947 5_4:-11465458 None:intergenic
AATCTTGGTCCTCCTCCAAA+CGG 0.560213 5_4:-11464821 None:intergenic
CCCAAGCTTAATCTTCCACC+AGG 0.560832 5_4:+11459858 Msa0837470:CDS
AACCTCAACACTTTAATCCA+TGG 0.561645 5_4:+11461906 Msa0837470:CDS
GCAGTTCCAGGAAAATTCAA+TGG 0.565674 5_4:-11460598 None:intergenic
TTCATCTTGAGCTGCAAATG+TGG 0.566713 5_4:-11460354 None:intergenic
AAGAAAACGGATAATGAAAG+TGG 0.570134 5_4:-11465355 None:intergenic
GAAATCTAATAGAGCCTAGA+GGG 0.574545 5_4:-11465380 None:intergenic
AGGCTAGCTACTAGGTAGCA+TGG 0.583430 5_4:-11465080 None:intergenic
TGAAATCTAATAGAGCCTAG+AGG 0.586886 5_4:-11465381 None:intergenic
TGTGAGGTTCCTTCATAGGA+AGG 0.587591 5_4:+11461666 Msa0837470:CDS
CTCAATTGTAGTATAGCTTG+AGG 0.591144 5_4:-11461067 None:intergenic
AGGTTGTGAACGAGACACTT+AGG 0.595014 5_4:+11461632 Msa0837470:intron
ATGGATTAAAGTGTTGAGGT+TGG 0.596823 5_4:-11461904 None:intergenic
AGTATAGCTTGAGGACAACC+AGG 0.597903 5_4:-11461058 None:intergenic
ACATTATGAGTCTTCAACCT+GGG 0.598352 5_4:+11460512 Msa0837470:CDS
GATATGATCATATTATAGAG+TGG 0.600493 5_4:-11464997 None:intergenic
AACACTTTAATCCATGGAGA+TGG 0.601114 5_4:+11461912 Msa0837470:CDS
CACATTATGAGTCTTCAACC+TGG 0.602197 5_4:+11460511 Msa0837470:CDS
TCATGGAACAACACATAGCA+AGG 0.602744 5_4:+11459955 Msa0837470:CDS
GGAAGGACTTTCCACCCACA+TGG 0.602750 5_4:-11461842 None:intergenic
GGTTCATATTACAAAATGAA+GGG 0.604734 5_4:+11460132 Msa0837470:CDS
ATATGATCATATTATAGAGT+GGG 0.604856 5_4:-11464996 None:intergenic
TTCCACCAGGAAGAATGGGT+TGG 0.608564 5_4:+11459871 Msa0837470:CDS
GGCCAACCCATTCTTCCTGG+TGG 0.611990 5_4:-11459873 None:intergenic
GGAGGACCAAGATTATGCGC+AGG 0.612238 5_4:+11464830 Msa0837470:CDS
GCACGGCTGCAATGACCGGA+AGG 0.622858 5_4:-11461859 None:intergenic
TCCAAGAGCTCACAACAAGA+CGG 0.630764 5_4:-11460322 None:intergenic
GTAGCATTGGTGGAATACTT+GGG 0.634040 5_4:+11460180 Msa0837470:CDS
GTTATGATATTCCATGTGGG+TGG 0.634243 5_4:+11461831 Msa0837470:CDS
ACCAATCAATTGAAGTACAA+GGG 0.635116 5_4:+11465319 Msa0837470:three_prime_UTR
TTAGGCTGGGTAATGTTGTG+AGG 0.639436 5_4:+11461650 Msa0837470:CDS
ACAATACTGAAGTTCATAGA+GGG 0.642789 5_4:+11460848 Msa0837470:CDS
AAGTAAAGGATCCAAATGCA+CGG 0.650077 5_4:-11461876 None:intergenic
GTGAACGAGACACTTAGGCT+GGG 0.659344 5_4:+11461637 Msa0837470:CDS
AGTTACATCTGAGTCAGACA+TGG 0.671062 5_4:-11459763 None:intergenic
AGAATCAAAAGAATGCAAGA+GGG 0.675343 5_4:+11460884 Msa0837470:CDS
GGGTTGGTGGTGCAGAACAA+TGG 0.686914 5_4:+11464749 Msa0837470:intron
AAAGGTTATGATATTCCATG+TGG 0.690985 5_4:+11461827 Msa0837470:intron
CTACTAGGTAGCATGGCATG+TGG 0.700562 5_4:-11465073 None:intergenic
AGAGGGAAATGAGAATTCGG+AGG 0.702791 5_4:+11460901 Msa0837470:CDS
AAGGTTATGATATTCCATGT+GGG 0.740085 5_4:+11461828 Msa0837470:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTATATTAAAAAAA+AGG - chr5_4:11461454-11461473 None:intergenic 0.0%
!! AAAAATTATATAAAAAATAA+AGG + chr5_4:11463118-11463137 Msa0837470:intron 0.0%
!! AAAATTATATAAAAAATAAA+GGG + chr5_4:11463119-11463138 Msa0837470:intron 0.0%
!! ACTAAATATAATAACAAAAT+GGG - chr5_4:11460691-11460710 None:intergenic 10.0%
!! TTAAACATTATGTAATTATT+AGG + chr5_4:11462146-11462165 Msa0837470:intron 10.0%
!! GAATAAAAATAATAAGTAAT+AGG + chr5_4:11462183-11462202 Msa0837470:intron 10.0%
!! ATAAAAATAATAAGTAATAG+GGG + chr5_4:11462185-11462204 Msa0837470:intron 10.0%
!! TATTATATTGATGTTAATAT+TGG + chr5_4:11464728-11464747 Msa0837470:intron 10.0%
!! ATTATATTGATGTTAATATT+GGG + chr5_4:11464729-11464748 Msa0837470:intron 10.0%
!!! ACAATCTTTTTTTTTTTTTT+TGG + chr5_4:11465512-11465531 Msa0837470:three_prime_UTR 10.0%
!!! CAATCTTTTTTTTTTTTTTT+GGG + chr5_4:11465513-11465532 Msa0837470:three_prime_UTR 10.0%
!!! ATTTTGTAGTTAGATTAAAA+GGG - chr5_4:11460032-11460051 None:intergenic 15.0%
!!! AATTTTGTAGTTAGATTAAA+AGG - chr5_4:11460033-11460052 None:intergenic 15.0%
!!! ATTTACAAATCAAATTTGTT+TGG + chr5_4:11460071-11460090 Msa0837470:CDS 15.0%
!! CACTAAATATAATAACAAAA+TGG - chr5_4:11460692-11460711 None:intergenic 15.0%
!! GTCATAAATGATAAATAAAT+TGG + chr5_4:11461414-11461433 Msa0837470:intron 15.0%
!! ATAAATGATAAATAAATTGG+AGG + chr5_4:11461417-11461436 Msa0837470:intron 15.0%
!! TAAATGATAAATAAATTGGA+GGG + chr5_4:11461418-11461437 Msa0837470:intron 15.0%
!! CAATATCAAAATCAAAATAT+GGG - chr5_4:11462027-11462046 None:intergenic 15.0%
!! ATTATGTAATTATTAGGAAA+AGG + chr5_4:11462152-11462171 Msa0837470:intron 15.0%
!! TTATGTAATTATTAGGAAAA+GGG + chr5_4:11462153-11462172 Msa0837470:intron 15.0%
!! TACATTCTTATAATAATGTT+AGG + chr5_4:11464444-11464463 Msa0837470:intron 15.0%
!! ACATTCTTATAATAATGTTA+GGG + chr5_4:11464445-11464464 Msa0837470:intron 15.0%
!! ACATCAATATAATATTCAAA+TGG - chr5_4:11464722-11464741 None:intergenic 15.0%
!! ATATATAAAATGTACAATGT+GGG - chr5_4:11465422-11465441 None:intergenic 15.0%
!! AATATATAAAATGTACAATG+TGG - chr5_4:11465423-11465442 None:intergenic 15.0%
!! TTCAAAGCAAAACAAAAAAA+TGG - chr5_4:11459693-11459712 None:intergenic 20.0%
!!! AAGATAAACTAAAGTTTGTT+TGG + chr5_4:11460452-11460471 Msa0837470:intron 20.0%
!!! TTATGTTTTGTTTTTTACTG+TGG + chr5_4:11461283-11461302 Msa0837470:intron 20.0%
!! AAATGATAAATAAATTGGAG+GGG + chr5_4:11461419-11461438 Msa0837470:intron 20.0%
!! ATAGAGAATAGTTATAGTAA+AGG + chr5_4:11461782-11461801 Msa0837470:intron 20.0%
!! TAGAGAATAGTTATAGTAAA+GGG + chr5_4:11461783-11461802 Msa0837470:intron 20.0%
!! CCAATATCAAAATCAAAATA+TGG - chr5_4:11462028-11462047 None:intergenic 20.0%
!!! CCATATTTTGATTTTGATAT+TGG + chr5_4:11462025-11462044 Msa0837470:intron 20.0%
!! TATGTAATTATTAGGAAAAG+GGG + chr5_4:11462154-11462173 Msa0837470:intron 20.0%
!! AATAACAAATTTAAGTGCTT+GGG - chr5_4:11462213-11462232 None:intergenic 20.0%
!!! AAAATTTGGTTCACTTTTAA+GGG + chr5_4:11462286-11462305 Msa0837470:intron 20.0%
!! AATAATTTATAGTTAGCTAG+GGG - chr5_4:11462603-11462622 None:intergenic 20.0%
!! GAATAATTTATAGTTAGCTA+GGG - chr5_4:11462604-11462623 None:intergenic 20.0%
!! TGAATAATTTATAGTTAGCT+AGG - chr5_4:11462605-11462624 None:intergenic 20.0%
!! AACTATAAATTATTCAGTGT+TGG + chr5_4:11462609-11462628 Msa0837470:intron 20.0%
!! ACTATAAATTATTCAGTGTT+GGG + chr5_4:11462610-11462629 Msa0837470:intron 20.0%
!!! AAAGTTTCAATTTAGAATCT+GGG + chr5_4:11462928-11462947 Msa0837470:intron 20.0%
!!! TAAAAGAGGGTTTAATTTTT+GGG - chr5_4:11463057-11463076 None:intergenic 20.0%
!! TAACAGTTAGAGTATAAAAA+TGG + chr5_4:11463326-11463345 Msa0837470:intron 20.0%
!!! TCATCATAATAACATCTTTT+GGG - chr5_4:11463582-11463601 None:intergenic 20.0%
!!! ATCATCATAATAACATCTTT+TGG - chr5_4:11463583-11463602 None:intergenic 20.0%
!! AAAAAATAAAAGAGAAAAGG+TGG - chr5_4:11463712-11463731 None:intergenic 20.0%
!! TGGAAAAAATAAAAGAGAAA+AGG - chr5_4:11463715-11463734 None:intergenic 20.0%
!!! TTAAGTTTAAAATTGTGCAT+TGG - chr5_4:11463940-11463959 None:intergenic 20.0%
!! ATAGTGCAAATATTCTAAAT+AGG + chr5_4:11464102-11464121 Msa0837470:intron 20.0%
!! ATATGATCATATTATAGAGT+GGG - chr5_4:11464999-11465018 None:intergenic 20.0%
!!! TCTTTTTCTTAGTTATAGAA+TGG - chr5_4:11465053-11465072 None:intergenic 20.0%
!!! TATGATTTGAAGATACTTTT+AGG + chr5_4:11465283-11465302 Msa0837470:three_prime_UTR 20.0%
!!! ATGATTTGAAGATACTTTTA+GGG + chr5_4:11465284-11465303 Msa0837470:three_prime_UTR 20.0%
!! TTTATTTGTATTATTATCCC+AGG + chr5_4:11465441-11465460 Msa0837470:three_prime_UTR 20.0%
!!! TTCGGTTTTTTTCACTTTAA+AGG + chr5_4:11459582-11459601 Msa0837470:five_prime_UTR 25.0%
!! TTAAGACCAGACAATTTTTA+AGG + chr5_4:11459733-11459752 Msa0837470:five_prime_UTR 25.0%
! TACAACTATAGGAAAATTCA+TGG + chr5_4:11459938-11459957 Msa0837470:CDS 25.0%
! CTAACTACAAAATTATATGC+AGG + chr5_4:11460039-11460058 Msa0837470:intron 25.0%
! TACAAAATTATATGCAGGTA+TGG + chr5_4:11460044-11460063 Msa0837470:intron 25.0%
!! TACAAATCAAATTTGTTTGG+TGG + chr5_4:11460074-11460093 Msa0837470:CDS 25.0%
! AGGTTCATATTACAAAATGA+AGG + chr5_4:11460131-11460150 Msa0837470:CDS 25.0%
! GGTTCATATTACAAAATGAA+GGG + chr5_4:11460132-11460151 Msa0837470:CDS 25.0%
!!! GAGTATGTTACTTTTATGAA+AGG + chr5_4:11460562-11460581 Msa0837470:CDS 25.0%
! TTAGTGCATGTTTAATTACA+CGG + chr5_4:11460706-11460725 Msa0837470:intron 25.0%
! ACATCGACAAATATAATTAG+TGG - chr5_4:11461173-11461192 None:intergenic 25.0%
!! TTTTACTGTGGAAAAACAAT+AGG + chr5_4:11461295-11461314 Msa0837470:intron 25.0%
! AAATCTCTTTAGTGAGAAAA+AGG + chr5_4:11461757-11461776 Msa0837470:intron 25.0%
! AGAGAATAGTTATAGTAAAG+GGG + chr5_4:11461784-11461803 Msa0837470:intron 25.0%
!! ATTCTTTTTGTGTTTGTGAA+AGG + chr5_4:11461809-11461828 Msa0837470:intron 25.0%
!! ATGTTACTTATCAAGTAGAA+AGG - chr5_4:11461947-11461966 None:intergenic 25.0%
! ATGTAATTATTAGGAAAAGG+GGG + chr5_4:11462155-11462174 Msa0837470:intron 25.0%
! ATAACAAATTTAAGTGCTTG+GGG - chr5_4:11462212-11462231 None:intergenic 25.0%
! CAATAACAAATTTAAGTGCT+TGG - chr5_4:11462214-11462233 None:intergenic 25.0%
!!! AGCACTTAAATTTGTTATTG+TGG + chr5_4:11462214-11462233 Msa0837470:intron 25.0%
!!! ACTTAAATTTGTTATTGTGG+TGG + chr5_4:11462217-11462236 Msa0837470:intron 25.0%
!!! CAAAATTTGGTTCACTTTTA+AGG + chr5_4:11462285-11462304 Msa0837470:intron 25.0%
! CAAAAATGTAACTTCGTATA+GGG + chr5_4:11462322-11462341 Msa0837470:intron 25.0%
!!! TAAAAGTGTTCTATAGCTAT+AGG - chr5_4:11462532-11462551 None:intergenic 25.0%
! CAGATTCTAAATTGAAACTT+TGG - chr5_4:11462929-11462948 None:intergenic 25.0%
!! CAAAGTTTCAATTTAGAATC+TGG + chr5_4:11462927-11462946 Msa0837470:intron 25.0%
!! TATATCTCAATCGAGATTTT+TGG + chr5_4:11463014-11463033 Msa0837470:intron 25.0%
!!! GTAAAAGAGGGTTTAATTTT+TGG - chr5_4:11463058-11463077 None:intergenic 25.0%
!! CACGTTAATGAATTTTTGTT+AGG - chr5_4:11463236-11463255 None:intergenic 25.0%
! TACAATGAATAGTGTAACTT+TGG + chr5_4:11463396-11463415 Msa0837470:intron 25.0%
!!! CTCTTTTATTTTTTCCATCA+TGG + chr5_4:11463718-11463737 Msa0837470:intron 25.0%
! AGAGTTTAAGTCAGTTAATT+AGG + chr5_4:11463805-11463824 Msa0837470:intron 25.0%
! TCTAAATAGGTCAAGTAATA+TGG + chr5_4:11464115-11464134 Msa0837470:intron 25.0%
! CTAAATAGGTCAAGTAATAT+GGG + chr5_4:11464116-11464135 Msa0837470:intron 25.0%
!! AGAAGTGAGTTTTTATGTTA+GGG - chr5_4:11464178-11464197 None:intergenic 25.0%
! CTCACACACATTTATTTATT+AGG + chr5_4:11464196-11464215 Msa0837470:intron 25.0%
! TTGATTACATAAGATTAGTG+CGG + chr5_4:11464227-11464246 Msa0837470:intron 25.0%
!! GTATTAAGATTGATGATTTC+TGG - chr5_4:11464351-11464370 None:intergenic 25.0%
! TCTTATAATAATGTTAGGGA+AGG + chr5_4:11464449-11464468 Msa0837470:intron 25.0%
!! TTTTATAGTTGGAGTAATCT+TGG + chr5_4:11464505-11464524 Msa0837470:intron 25.0%
!!! AACACTTCAGATTTTAGTAT+AGG - chr5_4:11464597-11464616 None:intergenic 25.0%
! TATTGATGTTAATATTGGGT+TGG + chr5_4:11464733-11464752 Msa0837470:intron 25.0%
!! AGTAATATTTTCTTACCGTT+TGG + chr5_4:11464806-11464825 Msa0837470:CDS 25.0%
! GATATGATCATATTATAGAG+TGG - chr5_4:11465000-11465019 None:intergenic 25.0%
! TTAATTATAGATGATCGATC+AGG - chr5_4:11465168-11465187 None:intergenic 25.0%
!! TTACACCGAATTTTGAATTT+TGG - chr5_4:11465233-11465252 None:intergenic 25.0%
!! CGTTTTCCTAAAAAAATATG+CGG - chr5_4:11465256-11465275 None:intergenic 25.0%
!!! TTTTTTTAGGAAAACGATTC+AGG + chr5_4:11465260-11465279 Msa0837470:three_prime_UTR 25.0%
GCTTAACCTTAAAAATTGTC+TGG - chr5_4:11459742-11459761 None:intergenic 30.0%
AGCATGACACAAAAAATTGA+GGG - chr5_4:11460261-11460280 None:intergenic 30.0%
TAGCATGACACAAAAAATTG+AGG - chr5_4:11460262-11460281 None:intergenic 30.0%
TAGAACACATCTATTGAAAG+AGG + chr5_4:11460286-11460305 Msa0837470:CDS 30.0%
!! GCAGTTCACATTTAATTTGA+TGG + chr5_4:11460483-11460502 Msa0837470:intron 30.0%
AAACTCTTTCGCTAAAATCA+CGG - chr5_4:11460739-11460758 None:intergenic 30.0%
!! TGATTTTAGCGAAAGAGTTT+GGG + chr5_4:11460739-11460758 Msa0837470:intron 30.0%
! AAAGAGTTTGGGTTTGTATT+TGG + chr5_4:11460750-11460769 Msa0837470:intron 30.0%
ACAATACTGAAGTTCATAGA+GGG + chr5_4:11460848-11460867 Msa0837470:CDS 30.0%
AAGAATCAAAAGAATGCAAG+AGG + chr5_4:11460883-11460902 Msa0837470:CDS 30.0%
AGAATCAAAAGAATGCAAGA+GGG + chr5_4:11460884-11460903 Msa0837470:CDS 30.0%
! AGGAAAATGATCTTTTGAAC+TGG + chr5_4:11460921-11460940 Msa0837470:CDS 30.0%
! GGAAAATGATCTTTTGAACT+GGG + chr5_4:11460922-11460941 Msa0837470:CDS 30.0%
AAAGTAAATAGCTAGAGCTA+TGG - chr5_4:11461035-11461054 None:intergenic 30.0%
TCAAGCTATACTACAATTGA+GGG + chr5_4:11461069-11461088 Msa0837470:CDS 30.0%
TTGGGAAGACTACAAAAAAA+TGG + chr5_4:11461373-11461392 Msa0837470:intron 30.0%
TCTGTTGTGAACACTTTAAA+GGG - chr5_4:11461513-11461532 None:intergenic 30.0%
TTCTGTTGTGAACACTTTAA+AGG - chr5_4:11461514-11461533 None:intergenic 30.0%
!! TAGTTTGCTCATATTTGTAC+AGG + chr5_4:11461612-11461631 Msa0837470:intron 30.0%
AAAGGTTATGATATTCCATG+TGG + chr5_4:11461827-11461846 Msa0837470:intron 30.0%
AAGGTTATGATATTCCATGT+GGG + chr5_4:11461828-11461847 Msa0837470:intron 30.0%
TGTAATTATTAGGAAAAGGG+GGG + chr5_4:11462156-11462175 Msa0837470:intron 30.0%
!! TAAATTTGTTATTGTGGTGG+TGG + chr5_4:11462220-11462239 Msa0837470:intron 30.0%
! CCTATACGAAGTTACATTTT+TGG - chr5_4:11462324-11462343 None:intergenic 30.0%
CCAAAAATGTAACTTCGTAT+AGG + chr5_4:11462321-11462340 Msa0837470:intron 30.0%
TGAGTTATTATCTTCCTACT+TGG + chr5_4:11462358-11462377 Msa0837470:intron 30.0%
! ACACAACAAGTTTTTACGTT+TGG + chr5_4:11462386-11462405 Msa0837470:intron 30.0%
! GATTACTGTTAATGTTGACT+TGG + chr5_4:11462505-11462524 Msa0837470:intron 30.0%
AGTGATAGTAATTAGTGACT+AGG + chr5_4:11462833-11462852 Msa0837470:intron 30.0%
TCAACTATATCTCACAATAG+AGG + chr5_4:11462863-11462882 Msa0837470:intron 30.0%
GAATCTGGGTTATTACTATT+AGG + chr5_4:11462942-11462961 Msa0837470:intron 30.0%
AGGGATACAAATAATGAGAA+TGG + chr5_4:11463138-11463157 Msa0837470:intron 30.0%
AACACGATGTATTTCTCTTT+GGG - chr5_4:11463181-11463200 None:intergenic 30.0%
TAACACGATGTATTTCTCTT+TGG - chr5_4:11463182-11463201 None:intergenic 30.0%
TATGCGCATGTTTCAAATTA+GGG - chr5_4:11463444-11463463 None:intergenic 30.0%
ATATGCGCATGTTTCAAATT+AGG - chr5_4:11463445-11463464 None:intergenic 30.0%
CATATAGATAGGATCTTTAG+TGG + chr5_4:11463460-11463479 Msa0837470:intron 30.0%
TATCATATTAGAGCACAAAG+TGG - chr5_4:11463870-11463889 None:intergenic 30.0%
TCAACTAGGTCAAGTAATAT+GGG - chr5_4:11463903-11463922 None:intergenic 30.0%
AGAAAAATAGAGTCAAAGCA+TGG + chr5_4:11464072-11464091 Msa0837470:intron 30.0%
! AAGTGAGTTTTTATGTTAGG+GGG - chr5_4:11464176-11464195 None:intergenic 30.0%
! GAAGTGAGTTTTTATGTTAG+GGG - chr5_4:11464177-11464196 None:intergenic 30.0%
! GAGAAGTGAGTTTTTATGTT+AGG - chr5_4:11464179-11464198 None:intergenic 30.0%
! AATATTTTCTTACCGTTTGG+AGG + chr5_4:11464809-11464828 Msa0837470:CDS 30.0%
AGAATTAGCAAAGCTTGAAA+TGG + chr5_4:11464856-11464875 Msa0837470:CDS 30.0%
ATCTCATTCTCAACTACAAT+TGG + chr5_4:11464894-11464913 Msa0837470:CDS 30.0%
TCTCATTCTCAACTACAATT+GGG + chr5_4:11464895-11464914 Msa0837470:CDS 30.0%
! CCTTTAGGAAAATCAACAAA+AGG - chr5_4:11464956-11464975 None:intergenic 30.0%
!!! CCTTTTGTTGATTTTCCTAA+AGG + chr5_4:11464953-11464972 Msa0837470:CDS 30.0%
GAATGGATGATCTAACTAAT+TGG - chr5_4:11465036-11465055 None:intergenic 30.0%
AAATCCAAATCCAACACAAA+AGG - chr5_4:11465103-11465122 None:intergenic 30.0%
!!! TTTGAATTTTGGCTGCTAAT+CGG - chr5_4:11465222-11465241 None:intergenic 30.0%
AGCAGCCAAAATTCAAAATT+CGG + chr5_4:11465225-11465244 Msa0837470:three_prime_UTR 30.0%
!!! GTGTAACCGCATATTTTTTT+AGG + chr5_4:11465247-11465266 Msa0837470:three_prime_UTR 30.0%
AACCAATCAATTGAAGTACA+AGG + chr5_4:11465318-11465337 Msa0837470:three_prime_UTR 30.0%
ACCAATCAATTGAAGTACAA+GGG + chr5_4:11465319-11465338 Msa0837470:three_prime_UTR 30.0%
AAGAAAACGGATAATGAAAG+TGG - chr5_4:11465358-11465377 None:intergenic 30.0%
ATAAAATGTACAATGTGGGT+GGG - chr5_4:11465418-11465437 None:intergenic 30.0%
TATAAAATGTACAATGTGGG+TGG - chr5_4:11465419-11465438 None:intergenic 30.0%
TAATAGTAGATTACAGTCCT+GGG - chr5_4:11465461-11465480 None:intergenic 30.0%
GATTGTACACAATAGATAAC+TGG - chr5_4:11465498-11465517 None:intergenic 30.0%
! CTTATAAAAGCACACCCTAT+TGG + chr5_4:11459616-11459635 Msa0837470:five_prime_UTR 35.0%
ATGAATGTGTGAAGCCAATA+GGG - chr5_4:11459633-11459652 None:intergenic 35.0%
AATGAATGTGTGAAGCCAAT+AGG - chr5_4:11459634-11459653 None:intergenic 35.0%
CCAATAGTTTCTCCAATGAA+AGG - chr5_4:11459897-11459916 None:intergenic 35.0%
CCTTTCATTGGAGAAACTAT+TGG + chr5_4:11459894-11459913 Msa0837470:CDS 35.0%
CCTATAGTTGTAGCAGAATA+AGG - chr5_4:11459930-11459949 None:intergenic 35.0%
CCTTATTCTGCTACAACTAT+AGG + chr5_4:11459927-11459946 Msa0837470:CDS 35.0%
TGTAGTTATCCAAGTAGCAT+TGG + chr5_4:11460167-11460186 Msa0837470:CDS 35.0%
!!! GAAATGGTCTATGTTGGTTT+TGG + chr5_4:11460202-11460221 Msa0837470:CDS 35.0%
AGCTCAAGATGAAGCTAAAA+AGG + chr5_4:11460364-11460383 Msa0837470:CDS 35.0%
ACATTATGAGTCTTCAACCT+GGG + chr5_4:11460512-11460531 Msa0837470:CDS 35.0%
!! GTGATTTTAGCGAAAGAGTT+TGG + chr5_4:11460738-11460757 Msa0837470:intron 35.0%
TGGGTTTGTATTTGGTATCA+CGG + chr5_4:11460758-11460777 Msa0837470:intron 35.0%
AACAAACATATGTCAGAGTC+AGG - chr5_4:11460807-11460826 None:intergenic 35.0%
CACAATACTGAAGTTCATAG+AGG + chr5_4:11460847-11460866 Msa0837470:CDS 35.0%
GAAGTTCATAGAGGGTAAAA+TGG + chr5_4:11460856-11460875 Msa0837470:CDS 35.0%
CTAGCTATTTACTTTCTTCC+TGG + chr5_4:11461040-11461059 Msa0837470:CDS 35.0%
CTCAATTGTAGTATAGCTTG+AGG - chr5_4:11461070-11461089 None:intergenic 35.0%
CTCAAGCTATACTACAATTG+AGG + chr5_4:11461068-11461087 Msa0837470:CDS 35.0%
TATTTGTCGATGTTGTGCTT+CGG + chr5_4:11461180-11461199 Msa0837470:intron 35.0%
CTTAAAGATGTTCGGTACAA+AGG + chr5_4:11461691-11461710 Msa0837470:CDS 35.0%
AAGTAAAGGATCCAAATGCA+CGG - chr5_4:11461879-11461898 None:intergenic 35.0%
! TGAGGTTGGTCAAAAAGTAA+AGG - chr5_4:11461893-11461912 None:intergenic 35.0%
!! ATGGATTAAAGTGTTGAGGT+TGG - chr5_4:11461907-11461926 None:intergenic 35.0%
AACCTCAACACTTTAATCCA+TGG + chr5_4:11461906-11461925 Msa0837470:CDS 35.0%
AACACTTTAATCCATGGAGA+TGG + chr5_4:11461912-11461931 Msa0837470:CDS 35.0%
GTAATTATTAGGAAAAGGGG+GGG + chr5_4:11462157-11462176 Msa0837470:intron 35.0%
GTGTGGTTGTGAACAAAATT+TGG + chr5_4:11462272-11462291 Msa0837470:intron 35.0%
TTGTTGTGTTCTTTCCAAGT+AGG - chr5_4:11462375-11462394 None:intergenic 35.0%
CTTGTGTACGTTATGTTGTT+CGG - chr5_4:11462427-11462446 None:intergenic 35.0%
!! CTGAAGCTCTAAATCTTTAG+TGG + chr5_4:11462573-11462592 Msa0837470:intron 35.0%
ACAATAGAGGATCAAGTACA+TGG + chr5_4:11462876-11462895 Msa0837470:intron 35.0%
CAATAGAGGATCAAGTACAT+GGG + chr5_4:11462877-11462896 Msa0837470:intron 35.0%
! TAATGAGAATGGACTTGACT+CGG + chr5_4:11463149-11463168 Msa0837470:intron 35.0%
TCGTGTTAAATCAGTCTAGA+TGG + chr5_4:11463194-11463213 Msa0837470:intron 35.0%
TGAAACATGCGCATATAGAT+AGG + chr5_4:11463449-11463468 Msa0837470:intron 35.0%
! TGAAGTGTCATAATCAACGA+TGG + chr5_4:11463518-11463537 Msa0837470:intron 35.0%
! GAAGTGTCATAATCAACGAT+GGG + chr5_4:11463519-11463538 Msa0837470:intron 35.0%
TGTTGTGAACAGTAGTACTA+CGG + chr5_4:11463544-11463563 Msa0837470:intron 35.0%
! ATTATGATGATGAGCAAGCA+TGG + chr5_4:11463592-11463611 Msa0837470:intron 35.0%
AATTAATGACCTGGAAACTC+AGG - chr5_4:11463646-11463665 None:intergenic 35.0%
ATGGGCATTAATTAATGACC+TGG - chr5_4:11463655-11463674 None:intergenic 35.0%
GTCATTAATTAATGCCCATG+TGG + chr5_4:11463656-11463675 Msa0837470:intron 35.0%
GTCAACTAGGTCAAGTAATA+TGG - chr5_4:11463904-11463923 None:intergenic 35.0%
ATAGGTCAAGTAATATGGGA+CGG + chr5_4:11464120-11464139 Msa0837470:intron 35.0%
ATGTACATATGTAGCCAAGT+GGG + chr5_4:11464260-11464279 Msa0837470:intron 35.0%
!! AACTTATCACTTTTCCCACT+TGG - chr5_4:11464277-11464296 None:intergenic 35.0%
! GGTTTTTACTGCATGAGATA+TGG - chr5_4:11464477-11464496 None:intergenic 35.0%
TCATGCAGTAAAAACCACAT+CGG + chr5_4:11464481-11464500 Msa0837470:intron 35.0%
CTTGGCTGTCTAATTAAGAT+CGG + chr5_4:11464523-11464542 Msa0837470:intron 35.0%
!! CTGAAGTGTTTGCTTTTGAT+CGG + chr5_4:11464607-11464626 Msa0837470:intron 35.0%
!! TGATGTTAATATTGGGTTGG+TGG + chr5_4:11464736-11464755 Msa0837470:intron 35.0%
GTGCAGAACAATGGTAATAA+TGG + chr5_4:11464758-11464777 Msa0837470:intron 35.0%
! ACTCTAATTTGTAGGCCTTT+AGG - chr5_4:11464971-11464990 None:intergenic 35.0%
! ATCATATTATAGAGTGGGCT+TGG - chr5_4:11464994-11465013 None:intergenic 35.0%
GAAATCTAATAGAGCCTAGA+GGG - chr5_4:11465383-11465402 None:intergenic 35.0%
TGAAATCTAATAGAGCCTAG+AGG - chr5_4:11465384-11465403 None:intergenic 35.0%
TAAAATGTACAATGTGGGTG+GGG - chr5_4:11465417-11465436 None:intergenic 35.0%
GTAATAGTAGATTACAGTCC+TGG - chr5_4:11465462-11465481 None:intergenic 35.0%
AGTTACATCTGAGTCAGACA+TGG - chr5_4:11459766-11459785 None:intergenic 40.0%
TGGAAGATTAAGCTTGGGTT+TGG - chr5_4:11459856-11459875 None:intergenic 40.0%
TAATCTTCCACCAGGAAGAA+TGG + chr5_4:11459866-11459885 Msa0837470:CDS 40.0%
AATCTTCCACCAGGAAGAAT+GGG + chr5_4:11459867-11459886 Msa0837470:CDS 40.0%
TCATGGAACAACACATAGCA+AGG + chr5_4:11459955-11459974 Msa0837470:CDS 40.0%
GCATCTGCTGAAACTATTGT+TGG - chr5_4:11460101-11460120 None:intergenic 40.0%
ACAATAGTTTCAGCAGATGC+AGG + chr5_4:11460101-11460120 Msa0837470:CDS 40.0%
! AGTTATCCAAGTAGCATTGG+TGG + chr5_4:11460170-11460189 Msa0837470:CDS 40.0%
AGTATTCCACCAATGCTACT+TGG - chr5_4:11460179-11460198 None:intergenic 40.0%
!! AGTAGCATTGGTGGAATACT+TGG + chr5_4:11460179-11460198 Msa0837470:CDS 40.0%
!! GTAGCATTGGTGGAATACTT+GGG + chr5_4:11460180-11460199 Msa0837470:CDS 40.0%
TTGGTGGAATACTTGGGAAA+TGG + chr5_4:11460186-11460205 Msa0837470:CDS 40.0%
ACTTGGGAAATGGTCTATGT+TGG + chr5_4:11460196-11460215 Msa0837470:CDS 40.0%
!!! TGGTCTATGTTGGTTTTGGT+TGG + chr5_4:11460206-11460225 Msa0837470:CDS 40.0%
TTCATCTTGAGCTGCAAATG+TGG - chr5_4:11460357-11460376 None:intergenic 40.0%
CACATTATGAGTCTTCAACC+TGG + chr5_4:11460511-11460530 Msa0837470:CDS 40.0%
! TTCTCTGTCTCTATTTTCCC+AGG - chr5_4:11460532-11460551 None:intergenic 40.0%
! TCAGCACCATTGAATTTTCC+TGG + chr5_4:11460592-11460611 Msa0837470:CDS 40.0%
GCAGTTCCAGGAAAATTCAA+TGG - chr5_4:11460601-11460620 None:intergenic 40.0%
! ATTTTCCTGGAACTGCTTAC+TGG + chr5_4:11460605-11460624 Msa0837470:CDS 40.0%
!! TGCTTACTGGAGAGCATTAA+AGG + chr5_4:11460618-11460637 Msa0837470:CDS 40.0%
GCAAGAGGGAAATGAGAATT+CGG + chr5_4:11460898-11460917 Msa0837470:CDS 40.0%
GTGTCTGTGTTCATACTTCA+TGG - chr5_4:11461124-11461143 None:intergenic 40.0%
!! AATTAGTGGTGTTGACGTGT+CGG - chr5_4:11461159-11461178 None:intergenic 40.0%
!!! TGTTTCCCCTGCTAGTTTTT+TGG - chr5_4:11461345-11461364 None:intergenic 40.0%
ATGTTGTGAGGTTCCTTCAT+AGG + chr5_4:11461662-11461681 Msa0837470:CDS 40.0%
! CTTTAAGAGCCTTCCTATGA+AGG - chr5_4:11461678-11461697 None:intergenic 40.0%
GGAAGGCTCTTAAAGATGTT+CGG + chr5_4:11461683-11461702 Msa0837470:CDS 40.0%
GTTATGATATTCCATGTGGG+TGG + chr5_4:11461831-11461850 Msa0837470:CDS 40.0%
!! CTCCATGGATTAAAGTGTTG+AGG - chr5_4:11461911-11461930 None:intergenic 40.0%
CTGAACGATCACCAATGTAT+CGG - chr5_4:11461990-11462009 None:intergenic 40.0%
TTCAAAGGAAAGCCCAAGTA+GGG - chr5_4:11462251-11462270 None:intergenic 40.0%
GTGTTGGGTCAACATTCATT+TGG + chr5_4:11462625-11462644 Msa0837470:intron 40.0%
TCTCTCTCAACCAATGCTTA+TGG + chr5_4:11462674-11462693 Msa0837470:intron 40.0%
ATTCCTTGAGCCATAAGCAT+TGG - chr5_4:11462687-11462706 None:intergenic 40.0%
TTGAAACTTTGGCACATGCA+TGG - chr5_4:11462918-11462937 None:intergenic 40.0%
! ACCCTCTTTTACAATACCTG+AGG + chr5_4:11463066-11463085 Msa0837470:intron 40.0%
! GCCTCAGGTATTGTAAAAGA+GGG - chr5_4:11463070-11463089 None:intergenic 40.0%
!! AAAATAGCTTTGTACGCCTC+AGG - chr5_4:11463085-11463104 None:intergenic 40.0%
! AATGAGAATGGACTTGACTC+GGG + chr5_4:11463150-11463169 Msa0837470:intron 40.0%
TAGGATCTTTAGTGGTTAGC+AGG + chr5_4:11463468-11463487 Msa0837470:intron 40.0%
GTAGTACTACGGATGTATGT+AGG + chr5_4:11463555-11463574 Msa0837470:intron 40.0%
ATTAATGCCCATGTGGAAAG+TGG + chr5_4:11463663-11463682 Msa0837470:intron 40.0%
TTAATGCCCATGTGGAAAGT+GGG + chr5_4:11463664-11463683 Msa0837470:intron 40.0%
TTTCCATCATGGTCCTAACT+TGG + chr5_4:11463729-11463748 Msa0837470:intron 40.0%
! TGACACGTATTGACCAAGTT+AGG - chr5_4:11463745-11463764 None:intergenic 40.0%
CTAGGTCAAGTAATATGGGA+CGG - chr5_4:11463899-11463918 None:intergenic 40.0%
CATGTACATATGTAGCCAAG+TGG + chr5_4:11464259-11464278 Msa0837470:intron 40.0%
!! AGATTGATGATTTCTGGTGC+TGG - chr5_4:11464345-11464364 None:intergenic 40.0%
TGACTACATATGACAACTCG+AGG - chr5_4:11464390-11464409 None:intergenic 40.0%
CATCGAATCATGACACATGA+AGG - chr5_4:11464415-11464434 None:intergenic 40.0%
CATGCAGTAAAAACCACATC+GGG + chr5_4:11464482-11464501 Msa0837470:intron 40.0%
!! ACCACATCGGGTTTTATAGT+TGG + chr5_4:11464494-11464513 Msa0837470:intron 40.0%
TCCAACTATAAAACCCGATG+TGG - chr5_4:11464498-11464517 None:intergenic 40.0%
!! AGTGTTTGCTTTTGATCGGA+TGG + chr5_4:11464611-11464630 Msa0837470:intron 40.0%
!! TTTGCTTTTGATCGGATGGT+CGG + chr5_4:11464615-11464634 Msa0837470:intron 40.0%
! ATTTTCTTACCGTTTGGAGG+AGG + chr5_4:11464812-11464831 Msa0837470:CDS 40.0%
! AACACAAAAGGCTAGCTACT+AGG - chr5_4:11465091-11465110 None:intergenic 40.0%
!!! TAGTAGCTAGCCTTTTGTGT+TGG + chr5_4:11465090-11465109 Msa0837470:three_prime_UTR 40.0%
!! CTAGCCTTTTGTGTTGGATT+TGG + chr5_4:11465096-11465115 Msa0837470:three_prime_UTR 40.0%
GCCCTTGTACTTCAATTGAT+TGG - chr5_4:11465323-11465342 None:intergenic 40.0%
! AAGTACAAGGGCATGTCAAT+AGG + chr5_4:11465331-11465350 Msa0837470:three_prime_UTR 40.0%
CCTGGTGGAAGATTAAGCTT+GGG - chr5_4:11459861-11459880 None:intergenic 45.0%
TCCTGGTGGAAGATTAAGCT+TGG - chr5_4:11459862-11459881 None:intergenic 45.0%
!! AGAATGGGTTGGCCTTTCAT+TGG + chr5_4:11459882-11459901 Msa0837470:CDS 45.0%
CAGCAGATGCAGGATTGAAT+AGG + chr5_4:11460111-11460130 Msa0837470:CDS 45.0%
TCCAAGAGCTCACAACAAGA+CGG - chr5_4:11460325-11460344 None:intergenic 45.0%
! TCTTGTTGTGAGCTCTTGGA+AGG + chr5_4:11460325-11460344 Msa0837470:CDS 45.0%
AGAGGGAAATGAGAATTCGG+AGG + chr5_4:11460901-11460920 Msa0837470:CDS 45.0%
! ATTCTCAGCTTGCTCTTTGC+TGG + chr5_4:11460989-11461008 Msa0837470:CDS 45.0%
AGTATAGCTTGAGGACAACC+AGG - chr5_4:11461061-11461080 None:intergenic 45.0%
CCAGAGCCAAAAAACTAGCA+GGG + chr5_4:11461336-11461355 Msa0837470:intron 45.0%
CAGAGCCAAAAAACTAGCAG+GGG + chr5_4:11461337-11461356 Msa0837470:intron 45.0%
! AGGGGAAACAGAACTGACTT+GGG + chr5_4:11461355-11461374 Msa0837470:intron 45.0%
AGGTTGTGAACGAGACACTT+AGG + chr5_4:11461632-11461651 Msa0837470:intron 45.0%
TTAGGCTGGGTAATGTTGTG+AGG + chr5_4:11461650-11461669 Msa0837470:CDS 45.0%
TGTGAGGTTCCTTCATAGGA+AGG + chr5_4:11461666-11461685 Msa0837470:CDS 45.0%
CTTTAATCCATGGAGATGGC+AGG + chr5_4:11461916-11461935 Msa0837470:CDS 45.0%
AAGCACGCAAACCGATACAT+TGG + chr5_4:11461976-11461995 Msa0837470:intron 45.0%
GTCGACACATCAGTGATTCT+TGG - chr5_4:11462074-11462093 None:intergenic 45.0%
CTTCAAAGGAAAGCCCAAGT+AGG - chr5_4:11462252-11462271 None:intergenic 45.0%
CTACTTGGGCTTTCCTTTGA+AGG + chr5_4:11462250-11462269 Msa0837470:intron 45.0%
GTTCACAACCACACCTTCAA+AGG - chr5_4:11462266-11462285 None:intergenic 45.0%
CATAACGTACACAAGCTGCA+CGG + chr5_4:11462432-11462451 Msa0837470:intron 45.0%
CAACCAATGCTTATGGCTCA+AGG + chr5_4:11462681-11462700 Msa0837470:intron 45.0%
CTTTGGCACATGCATGGAAA+GGG - chr5_4:11462912-11462931 None:intergenic 45.0%
ACTTTGGCACATGCATGGAA+AGG - chr5_4:11462913-11462932 None:intergenic 45.0%
! CGCCTCAGGTATTGTAAAAG+AGG - chr5_4:11463071-11463090 None:intergenic 45.0%
CAACCCAACAAGCTTGTGTA+CGG + chr5_4:11463256-11463275 Msa0837470:intron 45.0%
! TGTCCGTACACAAGCTTGTT+GGG - chr5_4:11463262-11463281 None:intergenic 45.0%
ATGTCCGTACACAAGCTTGT+TGG - chr5_4:11463263-11463282 None:intergenic 45.0%
TGACCAAGTTAGGACCATGA+TGG - chr5_4:11463735-11463754 None:intergenic 45.0%
AGAGCACAAAGTGGTTAGTG+CGG - chr5_4:11463861-11463880 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG - chr5_4:11464124-11464143 None:intergenic 45.0%
CATACGTGACAGAGTCAACT+AGG - chr5_4:11463917-11463936 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG + chr5_4:11464124-11464143 Msa0837470:intron 45.0%
CATATGACAACTCGAGGCTA+AGG - chr5_4:11464384-11464403 None:intergenic 45.0%
TTGCCAGATGCACTTGAGTT+TGG - chr5_4:11464785-11464804 None:intergenic 45.0%
AATCTTGGTCCTCCTCCAAA+CGG - chr5_4:11464824-11464843 None:intergenic 45.0%
TCTGATCCTGCGCATAATCT+TGG - chr5_4:11464839-11464858 None:intergenic 45.0%
! GGGCTTGGACTCTAATTTGT+AGG - chr5_4:11464979-11464998 None:intergenic 45.0%
! ATCCGTTTTCTTCTCCCTCT+AGG + chr5_4:11465366-11465385 Msa0837470:three_prime_UTR 45.0%
AGCCTAGAGGGAGAAGAAAA+CGG - chr5_4:11465371-11465390 None:intergenic 45.0%
!! AATAAAAATAATAAGTAATA+GGG + chr5_4:11462184-11462203 Msa0837470:intron 5.0%
CCCAAGCTTAATCTTCCACC+AGG + chr5_4:11459858-11459877 Msa0837470:CDS 50.0%
TTCCACCAGGAAGAATGGGT+TGG + chr5_4:11459871-11459890 Msa0837470:CDS 50.0%
AAAGGCCAACCCATTCTTCC+TGG - chr5_4:11459879-11459898 None:intergenic 50.0%
GCCAGAGCCAAAAAACTAGC+AGG + chr5_4:11461335-11461354 Msa0837470:intron 50.0%
!!! CCCTGCTAGTTTTTTGGCTC+TGG - chr5_4:11461339-11461358 None:intergenic 50.0%
CAGGGGAAACAGAACTGACT+TGG + chr5_4:11461354-11461373 Msa0837470:intron 50.0%
TGTGAACGAGACACTTAGGC+TGG + chr5_4:11461636-11461655 Msa0837470:CDS 50.0%
GTGAACGAGACACTTAGGCT+GGG + chr5_4:11461637-11461656 Msa0837470:CDS 50.0%
ATGTGGGTGGAAAGTCCTTC+CGG + chr5_4:11461844-11461863 Msa0837470:CDS 50.0%
AAATGCACGGCTGCAATGAC+CGG - chr5_4:11461866-11461885 None:intergenic 50.0%
AAAGGAAAGCCCAAGTAGGG+AGG - chr5_4:11462248-11462267 None:intergenic 50.0%
! TGGGCTTTCCTTTGAAGGTG+TGG + chr5_4:11462255-11462274 Msa0837470:intron 50.0%
CTTCAGAGCATGTGCATTGG+TGG - chr5_4:11462559-11462578 None:intergenic 50.0%
GAGCTTCAGAGCATGTGCAT+TGG - chr5_4:11462562-11462581 None:intergenic 50.0%
CATGCATGGAAAGGGATGGA+CGG - chr5_4:11462904-11462923 None:intergenic 50.0%
! GTGGTTAGCAGGCATTGCAT+TGG + chr5_4:11463479-11463498 Msa0837470:intron 50.0%
ATGGCCATTGTGTGAACGTG+TGG + chr5_4:11463611-11463630 Msa0837470:intron 50.0%
TGGCCATTGTGTGAACGTGT+GGG + chr5_4:11463612-11463631 Msa0837470:intron 50.0%
GATATGCACGTGCAAGTGAG+AGG - chr5_4:11463690-11463709 None:intergenic 50.0%
GGTCAAGTAATATGGGACGG+AGG - chr5_4:11464123-11464142 None:intergenic 50.0%
GGTCAAGTAATATGGGACGG+AGG + chr5_4:11464123-11464142 Msa0837470:intron 50.0%
!! GATGATTTCTGGTGCTGGAG+TGG - chr5_4:11464340-11464359 None:intergenic 50.0%
GGACCAAACTCAAGTGCATC+TGG + chr5_4:11464779-11464798 Msa0837470:CDS 50.0%
CTACTAGGTAGCATGGCATG+TGG - chr5_4:11465076-11465095 None:intergenic 50.0%
! AGGCTAGCTACTAGGTAGCA+TGG - chr5_4:11465083-11465102 None:intergenic 50.0%
! GCCGTCTTGTTGTGAGCTCT+TGG + chr5_4:11460321-11460340 Msa0837470:CDS 55.0%
GCTCTCCAGTAAGCAGTTCC+AGG - chr5_4:11460613-11460632 None:intergenic 55.0%
GGAAGGACTTTCCACCCACA+TGG - chr5_4:11461845-11461864 None:intergenic 55.0%
GGTCATTGCAGCCGTGCATT+TGG + chr5_4:11461865-11461884 Msa0837470:CDS 55.0%
GGACTAACCTGCCATCTCCA+TGG - chr5_4:11461926-11461945 None:intergenic 55.0%
!! GTGGTGGATCCTCCCTACTT+GGG + chr5_4:11462236-11462255 Msa0837470:intron 55.0%
GGCACATGCATGGAAAGGGA+TGG - chr5_4:11462908-11462927 None:intergenic 55.0%
CTGCCCACACGTTCACACAA+TGG - chr5_4:11463618-11463637 None:intergenic 55.0%
GAGAGGCCCACTTTCCACAT+GGG - chr5_4:11463673-11463692 None:intergenic 55.0%
TGAGAGGCCCACTTTCCACA+TGG - chr5_4:11463674-11463693 None:intergenic 55.0%
!! TCTGGTGCTGGAGTGGACTA+TGG - chr5_4:11464333-11464352 None:intergenic 55.0%
!! GGGTTGGTGGTGCAGAACAA+TGG + chr5_4:11464749-11464768 Msa0837470:intron 55.0%
GGAGGACCAAGATTATGCGC+AGG + chr5_4:11464830-11464849 Msa0837470:CDS 55.0%
GTACAATGTGGGTGGGGTAG+TGG - chr5_4:11465411-11465430 None:intergenic 55.0%
GGCCAACCCATTCTTCCTGG+TGG - chr5_4:11459876-11459895 None:intergenic 60.0%
!! GGTGTTGACGTGTCGGTGTC+TGG - chr5_4:11461152-11461171 None:intergenic 60.0%
!! GGTGGTGGATCCTCCCTACT+TGG + chr5_4:11462235-11462254 Msa0837470:intron 60.0%
TGTGTGAACGTGTGGGCAGC+AGG + chr5_4:11463619-11463638 Msa0837470:intron 60.0%
GCAGCAGGTCCTGAGTTTCC+AGG + chr5_4:11463634-11463653 Msa0837470:intron 60.0%
GCACGGCTGCAATGACCGGA+AGG - chr5_4:11461862-11461881 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 11459568 11465604 11459568 ID=Msa0837470;Name=Msa0837470
chr5_4 mRNA 11459568 11465604 11459568 ID=Msa0837470-mRNA-1;Parent=Msa0837470;Name=Msa0837470-mRNA-1;_AED=0.12;_eAED=0.12;_QI=197|0.83|1|1|1|1|7|592|458
chr5_4 exon 11459568 11459976 11459568 ID=Msa0837470-mRNA-1:exon:5002;Parent=Msa0837470-mRNA-1
chr5_4 exon 11460061 11460385 11460061 ID=Msa0837470-mRNA-1:exon:5003;Parent=Msa0837470-mRNA-1
chr5_4 exon 11460487 11460639 11460487 ID=Msa0837470-mRNA-1:exon:5004;Parent=Msa0837470-mRNA-1
chr5_4 exon 11460839 11461090 11460839 ID=Msa0837470-mRNA-1:exon:5005;Parent=Msa0837470-mRNA-1
chr5_4 exon 11461634 11461712 11461634 ID=Msa0837470-mRNA-1:exon:5006;Parent=Msa0837470-mRNA-1
chr5_4 exon 11461831 11461937 11461831 ID=Msa0837470-mRNA-1:exon:5007;Parent=Msa0837470-mRNA-1
chr5_4 exon 11464764 11465604 11464764 ID=Msa0837470-mRNA-1:exon:5008;Parent=Msa0837470-mRNA-1
chr5_4 five_prime_UTR 11459568 11459764 11459568 ID=Msa0837470-mRNA-1:five_prime_utr;Parent=Msa0837470-mRNA-1
chr5_4 CDS 11459765 11459976 11459765 ID=Msa0837470-mRNA-1:cds;Parent=Msa0837470-mRNA-1
chr5_4 CDS 11460061 11460385 11460061 ID=Msa0837470-mRNA-1:cds;Parent=Msa0837470-mRNA-1
chr5_4 CDS 11460487 11460639 11460487 ID=Msa0837470-mRNA-1:cds;Parent=Msa0837470-mRNA-1
chr5_4 CDS 11460839 11461090 11460839 ID=Msa0837470-mRNA-1:cds;Parent=Msa0837470-mRNA-1
chr5_4 CDS 11461634 11461712 11461634 ID=Msa0837470-mRNA-1:cds;Parent=Msa0837470-mRNA-1
chr5_4 CDS 11461831 11461937 11461831 ID=Msa0837470-mRNA-1:cds;Parent=Msa0837470-mRNA-1
chr5_4 CDS 11464764 11465012 11464764 ID=Msa0837470-mRNA-1:cds;Parent=Msa0837470-mRNA-1
chr5_4 three_prime_UTR 11465013 11465604 11465013 ID=Msa0837470-mRNA-1:three_prime_utr;Parent=Msa0837470-mRNA-1
Gene Sequence

>Msa0837470

ATGTCTGACTCAGATGTAACTTTCTATTTTCTTTCTTCAATTTTTTCTCTTCTCATCTTCATTTTCTTTCTCATCAAAACAAAACATGCCAAACCCAAGCTTAATCTTCCACCAGGAAGAATGGGTTGGCCTTTCATTGGAGAAACTATTGGTTACTTGAAGCCTTATTCTGCTACAACTATAGGAAAATTCATGGAACAACACATAGCAAGGTATGGTAAAATTTACAAATCAAATTTGTTTGGTGGACCAACAATAGTTTCAGCAGATGCAGGATTGAATAGGTTCATATTACAAAATGAAGGGAAATTATTTGAGTGTAGTTATCCAAGTAGCATTGGTGGAATACTTGGGAAATGGTCTATGTTGGTTTTGGTTGGTGACATGCATAGAGACATGCGTAATATATCCCTCAATTTTTTGTGTCATGCTAGACTTAGAACACATCTATTGAAAGAGGTTGAGAAACATAGCCGTCTTGTTGTGAGCTCTTGGAAGGAAAAAACCACATTTGCAGCTCAAGATGAAGCTAAAAAGTTCACATTTAATTTGATGGCAGAACACATTATGAGTCTTCAACCTGGGAAAATAGAGACAGAGAACTTAAAGAAAGAGTATGTTACTTTTATGAAAGGTGTTGTATCAGCACCATTGAATTTTCCTGGAACTGCTTACTGGAGAGCATTAAAGTCAAGATGCACAATACTGAAGTTCATAGAGGGTAAAATGGAAGAAAGAATCAAAAGAATGCAAGAGGGAAATGAGAATTCGGAGGAAAATGATCTTTTGAACTGGGTTTTAAAACATTCAAATCTTTCAACAGAGCAAATTCTTGACTTGATTCTCAGCTTGCTCTTTGCTGGTCATGAAACTTCATCTGTTTCCATAGCTCTAGCTATTTACTTTCTTCCTGGTTGTCCTCAAGCTATACTACAATTGAGGGTTGTGAACGAGACACTTAGGCTGGGTAATGTTGTGAGGTTCCTTCATAGGAAGGCTCTTAAAGATGTTCGGTACAAAGGTTATGATATTCCATGTGGGTGGAAAGTCCTTCCGGTCATTGCAGCCGTGCATTTGGATCCTTTACTTTTTGACCAACCTCAACACTTTAATCCATGGAGATGGCAGAACAATGGTAATAATGGACCAAACTCAAGTGCATCTGGCAATAGTAATATTTTCTTACCGTTTGGAGGAGGACCAAGATTATGCGCAGGATCAGAATTAGCAAAGCTTGAAATGGCTGTTTTCATTCATCATCTCATTCTCAACTACAATTGGGAATTAACTGATAATAACGATCAAGCTTTTGCATATCCTTTTGTTGATTTTCCTAAAGGCCTACAAATTAGAGTCCAAGCCCACTCTATAATATGA
Protein sequence

>Msa0837470

MSDSDVTFYFLSSIFSLLIFIFFLIKTKHAKPKLNLPPGRMGWPFIGETIGYLKPYSATTIGKFMEQHIARYGKIYKSNLFGGPTIVSADAGLNRFILQNEGKLFECSYPSSIGGILGKWSMLVLVGDMHRDMRNISLNFLCHARLRTHLLKEVEKHSRLVVSSWKEKTTFAAQDEAKKFTFNLMAEHIMSLQPGKIETENLKKEYVTFMKGVVSAPLNFPGTAYWRALKSRCTILKFIEGKMEERIKRMQEGNENSEENDLLNWVLKHSNLSTEQILDLILSLLFAGHETSSVSIALAIYFLPGCPQAILQLRVVNETLRLGNVVRFLHRKALKDVRYKGYDIPCGWKVLPVIAAVHLDPLLFDQPQHFNPWRWQNNGNNGPNSSASGNSNIFLPFGGGPRLCAGSELAKLEMAVFIHHLILNYNWELTDNNDQAFAYPFVDFPKGLQIRVQAHSII*