AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0799060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799060 MtrunA17_Chr5g0403931 90.389 489 10 2 1 458 1 483 0.0 899
Msa0799060 MtrunA17_Chr8g0373441 75.490 408 64 3 1 376 1 404 0.0 617
Msa0799060 MtrunA17_Chr7g0226771 38.641 471 247 6 13 453 10 468 1.40e-120 360
Msa0799060 MtrunA17_Chr3g0113321 38.621 435 228 6 33 437 26 451 1.13e-103 317
Msa0799060 MtrunA17_Chr8g0341951 34.498 458 248 8 31 453 30 470 3.27e-90 282
Msa0799060 MtrunA17_Chr6g0478161 32.671 453 270 6 26 450 40 485 5.99e-88 277
Msa0799060 MtrunA17_Chr8g0372411 31.858 452 256 7 37 452 40 475 5.93e-85 269
Msa0799060 MtrunA17_Chr5g0397971 32.075 477 274 9 11 452 6 467 1.17e-83 265
Msa0799060 MtrunA17_Chr3g0078411 31.648 455 257 7 33 454 30 463 3.35e-78 251
Msa0799060 MtrunA17_Chr6g0455461 31.601 481 274 9 8 454 4 463 3.77e-78 250
Msa0799060 MtrunA17_Chr7g0219961 32.892 453 249 10 36 455 33 463 9.56e-76 244
Msa0799060 MtrunA17_Chr5g0443401 30.204 490 284 11 9 457 7 479 9.51e-69 226
Msa0799060 MtrunA17_Chr8g0380471 31.185 481 278 12 11 453 9 474 5.01e-66 219
Msa0799060 MtrunA17_Chr5g0408181 30.165 484 271 12 5 450 4 458 4.57e-65 216
Msa0799060 MtrunA17_Chr2g0293421 29.730 444 262 7 22 428 31 461 2.30e-63 213
Msa0799060 MtrunA17_Chr8g0369791 30.165 484 271 13 8 452 7 462 1.01e-62 210
Msa0799060 MtrunA17_Chr1g0153371 30.886 463 271 10 3 433 2 447 2.08e-60 204
Msa0799060 MtrunA17_Chr5g0443731 30.227 440 265 6 28 434 21 451 2.62e-59 201
Msa0799060 MtrunA17_Chr8g0381541 30.485 433 248 10 36 428 43 462 3.39e-58 199
Msa0799060 MtrunA17_Chr8g0381571 30.465 430 246 10 36 425 43 459 5.45e-58 198
Msa0799060 MtrunA17_Chr3g0089361 30.269 446 255 10 25 433 29 455 1.36e-57 197
Msa0799060 MtrunA17_Chr4g0044851 29.913 458 261 10 30 451 33 466 2.37e-57 196
Msa0799060 MtrunA17_Chr2g0293411 29.663 445 264 8 22 428 27 460 1.08e-56 195
Msa0799060 MtrunA17_Chr3g0107511 27.778 486 302 8 10 456 7 482 3.45e-55 191
Msa0799060 MtrunA17_Chr4g0044841 29.764 467 274 11 20 451 21 468 1.49e-54 189
Msa0799060 MtrunA17_Chr8g0388921 28.425 489 292 11 9 455 5 477 5.89e-54 187
Msa0799060 MtrunA17_Chr5g0400421 28.795 448 272 8 35 446 44 480 5.50e-53 185
Msa0799060 MtrunA17_Chr1g0164371 28.870 478 293 7 5 452 13 473 8.48e-53 184
Msa0799060 MtrunA17_Chr3g0107501 26.316 456 291 6 35 455 32 477 1.20e-52 184
Msa0799060 MtrunA17_Chr3g0089351 28.316 392 229 7 75 433 1 373 9.33e-50 174
Msa0799060 MtrunA17_Chr8g0339861 26.667 495 283 15 5 442 2 473 3.18e-47 169
Msa0799060 MtrunA17_Chr3g0141801 25.482 467 285 9 10 433 15 461 1.39e-46 168
Msa0799060 MtrunA17_Chr5g0400411 29.630 432 253 9 35 428 44 462 2.61e-46 167
Msa0799060 MtrunA17_Chr8g0372711 28.802 434 248 11 38 431 48 460 1.41e-43 159
Msa0799060 MtrunA17_Chr5g0404881 32.579 221 144 3 13 230 10 228 1.93e-39 142
Msa0799060 MtrunA17_Chr5g0436981 39.873 158 93 1 31 188 23 178 4.04e-39 140
Msa0799060 MtrunA17_Chr8g0380931 25.322 466 259 13 20 429 47 479 9.78e-39 146
Msa0799060 MtrunA17_Chr5g0404861 42.958 142 72 2 315 456 28 160 4.04e-34 125
Msa0799060 MtrunA17_Chr5g0437001 48.148 108 50 1 315 422 7 108 4.77e-31 117
Msa0799060 MtrunA17_Chr8g0381551 29.592 294 192 8 36 319 43 331 1.97e-29 117
Msa0799060 MtrunA17_Chr8g0373431 69.565 69 20 1 390 458 2 69 5.25e-28 105
Msa0799060 MtrunA17_Chr8g0381561 41.593 113 57 1 313 425 7 110 7.95e-26 102
Msa0799060 MtrunA17_Chr1g0161671 24.684 316 217 9 14 317 9 315 4.61e-25 105
Msa0799060 MtrunA17_Chr4g0000171 25.749 334 202 11 10 315 9 324 2.34e-24 103
Msa0799060 MtrunA17_Chr4g0000151 40.157 127 66 3 315 441 12 128 1.05e-23 96.7
Msa0799060 MtrunA17_Chr3g0089291 25.210 238 164 5 75 307 1 229 1.29e-19 87.8
Msa0799060 MtrunA17_Chr5g0436991 34.965 143 88 3 174 315 18 156 1.87e-18 82.4
Msa0799060 MtrunA17_Chr0c19g0493771 27.230 213 126 4 243 429 411 620 2.34e-18 87.8
Msa0799060 MtrunA17_Chr3g0101601 23.760 484 294 15 5 431 2 467 6.73e-18 85.9
Msa0799060 MtrunA17_Chr4g0000161 25.172 290 199 8 36 315 43 324 1.49e-17 83.6
Msa0799060 MtrunA17_Chr1g0160851 23.409 487 288 17 6 429 1 465 3.28e-17 84.0
Msa0799060 MtrunA17_Chr6g0463541 39.796 98 49 2 339 436 4 91 7.67e-17 76.3
Msa0799060 MtrunA17_Chr3g0101621 23.270 477 295 13 5 429 2 459 1.01e-16 82.4
Msa0799060 MtrunA17_Chr7g0215181 26.642 274 154 7 215 450 240 504 3.29e-16 80.9
Msa0799060 MtrunA17_Chr4g0013471 24.925 333 192 12 36 350 43 335 3.84e-16 80.1
Msa0799060 MtrunA17_Chr4g0047641 23.579 475 289 14 17 431 26 486 4.68e-16 80.5
Msa0799060 MtrunA17_Chr1g0205361 23.640 478 291 16 7 429 7 465 4.89e-16 80.5
Msa0799060 MtrunA17_Chr1g0160861 28.205 234 131 5 227 429 79 306 1.00e-15 78.2
Msa0799060 MtrunA17_Chr5g0395381 22.088 498 291 16 4 451 11 461 2.07e-15 78.2
Msa0799060 MtrunA17_Chr5g0396521 25.620 242 128 7 240 429 301 542 3.51e-15 77.8
Msa0799060 MtrunA17_Chr5g0395321 23.228 508 294 19 10 451 9 486 4.70e-15 77.4
Msa0799060 MtrunA17_Chr7g0246151 26.038 265 151 7 229 456 245 501 6.25e-15 77.0
Msa0799060 MtrunA17_Chr6g0457421 26.236 263 152 7 220 450 250 502 6.87e-15 76.6
Msa0799060 MtrunA17_Chr7g0265611 29.018 224 120 5 243 432 270 488 8.55e-15 76.6
Msa0799060 MtrunA17_Chr1g0161641 40.476 84 41 1 342 425 13 87 2.70e-14 68.2
Msa0799060 MtrunA17_Chr5g0431511 21.166 463 275 16 36 431 33 472 9.00e-14 73.2
Msa0799060 MtrunA17_Chr1g0174431 31.034 145 86 2 315 445 58 202 1.06e-13 70.1
Msa0799060 MtrunA17_Chr1g0174471 23.265 245 151 4 237 447 269 510 2.47e-13 72.0
Msa0799060 MtrunA17_Chr5g0401681 23.673 490 276 18 6 428 2 460 2.96e-13 71.6
Msa0799060 MtrunA17_Chr8g0336361 33.333 126 78 3 315 439 421 541 3.53e-13 71.6
Msa0799060 MtrunA17_Chr1g0161661 37.838 74 37 1 358 431 12 76 5.51e-13 65.1
Msa0799060 MtrunA17_Chr5g0405001 20.859 489 297 12 10 431 18 483 5.60e-13 70.9
Msa0799060 MtrunA17_Chr2g0314781 35.606 132 78 3 315 445 42 167 6.54e-13 67.0
Msa0799060 MtrunA17_Chr4g0035921 22.062 485 301 16 7 429 12 481 6.61e-13 70.5
Msa0799060 MtrunA17_Chr1g0203141 25.463 216 121 5 249 430 280 489 8.00e-13 70.5
Msa0799060 MtrunA17_Chr1g0174451 24.569 232 139 4 234 432 251 479 9.08e-13 70.1
Msa0799060 MtrunA17_Chr1g0200961 25.051 487 269 20 10 429 8 465 1.12e-12 69.7
Msa0799060 MtrunA17_Chr1g0203151 25.238 210 118 4 255 430 281 485 1.18e-12 69.7
Msa0799060 MtrunA17_Chr2g0288661 24.837 306 163 10 168 430 211 492 1.32e-12 69.7
Msa0799060 MtrunA17_Chr4g0004601 28.311 219 123 7 240 432 297 507 1.36e-12 69.7
Msa0799060 MtrunA17_Chr2g0313801 28.111 217 108 7 243 430 293 490 1.96e-12 69.3
Msa0799060 MtrunA17_Chr8g0354531 26.838 272 151 10 202 432 357 621 2.34e-12 69.3
Msa0799060 MtrunA17_Chr1g0197891 25.514 486 270 21 10 432 10 466 2.48e-12 68.9
Msa0799060 MtrunA17_Chr2g0313791 26.606 327 182 11 163 458 209 508 3.58e-12 68.2
Msa0799060 MtrunA17_Chr5g0400391 41.429 70 32 1 359 428 1 61 3.94e-12 62.8
Msa0799060 MtrunA17_Chr4g0058231 26.016 246 136 6 225 429 229 469 4.55e-12 67.8
Msa0799060 MtrunA17_Chr7g0235551 33.898 118 77 1 315 431 361 478 5.10e-12 67.8
Msa0799060 MtrunA17_Chr8g0382901 21.868 439 283 13 35 432 27 446 5.75e-12 68.2
Msa0799060 MtrunA17_Chr1g0197881 25.562 489 273 23 9 432 3 465 5.85e-12 67.8
Msa0799060 MtrunA17_Chr2g0313781 27.134 328 179 12 163 458 226 525 6.21e-12 67.8
Msa0799060 MtrunA17_Chr4g0053621 22.887 485 284 17 8 428 6 464 7.59e-12 67.4
Msa0799060 MtrunA17_Chr7g0258211 22.699 489 304 15 3 429 4 480 7.99e-12 67.4
Msa0799060 MtrunA17_Chr5g0401691 23.110 463 285 12 17 428 35 477 1.15e-11 66.6
Msa0799060 MtrunA17_Chr7g0246181 27.402 281 152 9 217 456 232 501 1.34e-11 66.6
Msa0799060 MtrunA17_Chr8g0355961 23.625 491 297 15 1 431 4 476 1.35e-11 66.6
Msa0799060 MtrunA17_Chr1g0174441 24.336 226 132 5 239 429 276 497 1.38e-11 66.6
Msa0799060 MtrunA17_Chr8g0356001 22.967 492 299 16 1 431 4 476 1.68e-11 66.2
Msa0799060 MtrunA17_Chr1g0197851 24.898 490 276 23 9 432 3 466 2.11e-11 65.9
Msa0799060 MtrunA17_Chr8g0361471 20.625 480 301 16 13 429 7 469 2.34e-11 65.9
Msa0799060 MtrunA17_Chr2g0313771 25.652 230 129 5 243 446 300 513 2.63e-11 65.5
Msa0799060 MtrunA17_Chr8g0354571 26.609 233 125 8 239 432 275 500 2.95e-11 65.5
Msa0799060 MtrunA17_Chr1g0174481 21.721 244 154 4 238 447 249 489 3.02e-11 65.5
Msa0799060 MtrunA17_Chr4g0058191 24.895 237 141 5 225 429 227 458 3.03e-11 65.5
Msa0799060 MtrunA17_Chr7g0235261 25.751 233 137 7 240 445 276 499 3.41e-11 65.1
Msa0799060 MtrunA17_Chr3g0116741 25.131 191 111 3 271 434 303 488 3.90e-11 65.1
Msa0799060 MtrunA17_Chr4g0020041 22.667 225 133 4 243 431 253 472 5.51e-11 64.7
Msa0799060 MtrunA17_Chr2g0313811 27.273 231 128 7 229 430 283 502 6.25e-11 64.3
Msa0799060 MtrunA17_Chr8g0362481 25.112 223 129 5 243 432 192 409 8.47e-11 63.9
Msa0799060 MtrunA17_Chr2g0313821 25.837 209 113 5 248 430 298 490 8.95e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799060 AT3G50660.1 65.975 482 108 4 26 452 29 509 0.0 640
Msa0799060 AT3G50660.2 66.832 404 82 2 26 377 29 432 0.0 551
Msa0799060 AT5G05690.1 38.018 434 228 6 34 437 29 451 3.72e-101 310
Msa0799060 AT5G14400.2 34.670 424 256 4 41 453 1 414 2.44e-99 304
Msa0799060 AT5G14400.3 35.427 398 237 3 41 427 1 389 2.59e-93 288
Msa0799060 AT1G73340.1 33.265 487 280 8 1 452 1 477 5.40e-93 290
Msa0799060 AT4G36380.1 34.725 455 245 8 36 452 69 509 1.39e-89 282
Msa0799060 AT1G12740.1 33.261 463 255 9 28 453 23 468 4.02e-87 274
Msa0799060 AT1G12740.2 32.762 467 258 9 28 453 23 474 2.58e-85 270
Msa0799060 AT1G12740.4 32.836 469 255 10 28 453 23 474 1.23e-84 268
Msa0799060 AT3G13730.1 33.038 451 257 6 36 453 51 489 1.57e-84 268
Msa0799060 AT5G05690.2 37.632 380 202 5 34 383 29 403 3.77e-84 265
Msa0799060 AT3G13730.2 33.886 422 236 5 37 425 52 463 5.67e-83 263
Msa0799060 AT5G14400.4 33.939 330 189 1 41 341 1 330 1.82e-72 232
Msa0799060 AT1G55940.2 30.364 494 280 12 11 457 18 494 2.09e-72 237
Msa0799060 AT3G30180.1 30.833 480 273 9 14 455 7 465 3.83e-72 235
Msa0799060 AT5G14400.1 31.707 369 231 4 96 453 2 360 4.06e-72 232
Msa0799060 AT5G38970.1 30.921 456 261 7 33 455 31 465 2.97e-71 233
Msa0799060 AT1G55940.1 30.736 462 257 11 11 425 18 463 2.17e-69 228
Msa0799060 AT3G44970.1 31.398 465 259 10 30 452 27 473 6.67e-69 227
Msa0799060 AT4G19230.1 30.435 483 272 13 5 450 2 457 1.21e-66 221
Msa0799060 AT4G19230.2 30.063 479 271 13 5 446 2 453 8.51e-64 214
Msa0799060 AT5G45340.1 29.228 479 281 10 8 453 7 460 2.37e-63 212
Msa0799060 AT5G05690.3 34.311 341 183 6 127 437 3 332 1.08e-62 207
Msa0799060 AT5G45340.2 29.095 464 271 10 8 438 7 445 2.86e-61 206
Msa0799060 AT3G19270.2 29.424 486 276 11 14 457 8 468 4.15e-61 206
Msa0799060 AT1G78490.1 28.776 490 284 12 11 452 1 473 3.45e-60 204
Msa0799060 AT1G05160.2 31.702 429 243 11 36 426 45 461 8.71e-60 203
Msa0799060 AT1G05160.1 31.702 429 243 11 36 426 45 461 8.71e-60 203
Msa0799060 AT1G12740.3 32.479 351 191 7 28 341 23 364 2.76e-58 196
Msa0799060 AT5G48000.2 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0799060 AT5G48000.4 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0799060 AT5G48000.7 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0799060 AT5G48000.6 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0799060 AT5G48000.5 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0799060 AT5G48000.3 28.112 466 273 11 30 452 27 473 3.91e-58 199
Msa0799060 AT3G19270.1 29.167 456 256 10 14 427 8 438 3.92e-58 198
Msa0799060 AT5G48000.1 28.112 466 273 11 30 452 68 514 2.40e-57 197
Msa0799060 AT2G42850.1 29.712 451 268 10 36 452 45 480 6.32e-56 193
Msa0799060 AT5G38970.3 30.851 376 215 5 33 375 31 394 2.54e-55 190
Msa0799060 AT5G36110.1 27.790 457 283 9 35 456 33 477 1.26e-54 189
Msa0799060 AT5G38970.2 28.822 399 235 6 90 455 2 384 2.22e-54 186
Msa0799060 AT5G38970.4 28.822 399 235 6 90 455 2 384 2.22e-54 186
Msa0799060 AT2G29090.2 27.655 452 277 7 33 452 46 479 4.06e-53 186
Msa0799060 AT2G29090.1 27.655 452 277 7 33 452 46 479 4.06e-53 186
Msa0799060 AT4G36380.2 30.994 342 196 4 36 341 69 406 4.91e-53 184
Msa0799060 AT2G32440.2 28.118 441 269 9 27 431 35 463 4.20e-52 183
Msa0799060 AT2G32440.1 28.118 441 269 9 27 431 35 463 4.20e-52 183
Msa0799060 AT4G15393.2 26.141 482 299 11 8 452 5 466 4.20e-52 182
Msa0799060 AT1G19630.1 26.250 480 296 12 12 452 12 472 1.37e-48 173
Msa0799060 AT1G65670.1 25.835 449 279 9 8 421 5 434 3.33e-48 172
Msa0799060 AT4G15396.1 25.873 487 296 14 8 452 5 468 1.04e-47 171
Msa0799060 AT4G15300.2 24.286 490 301 12 11 456 8 471 3.92e-47 169
Msa0799060 AT4G15396.3 26.754 456 271 12 8 421 5 439 5.59e-47 169
Msa0799060 AT4G15300.3 24.638 483 289 13 23 456 5 461 7.38e-47 168
Msa0799060 AT1G78490.2 28.502 414 239 10 11 376 1 405 8.05e-46 164
Msa0799060 AT1G19630.3 25.991 454 279 11 12 427 12 446 7.78e-45 162
Msa0799060 AT4G15396.2 25.373 469 300 15 8 452 5 447 1.47e-41 154
Msa0799060 AT2G29090.3 27.723 404 234 9 86 452 2 384 2.79e-41 151
Msa0799060 AT4G15310.1 26.061 495 302 15 4 456 2 474 2.89e-41 153
Msa0799060 AT4G15300.1 23.016 504 293 15 23 456 5 483 1.08e-39 149
Msa0799060 AT3G30290.1 24.402 418 262 11 74 456 3 401 2.43e-38 144
Msa0799060 AT4G15393.1 24.816 407 257 8 8 377 5 399 2.20e-37 141
Msa0799060 AT1G19630.2 24.938 405 257 10 12 378 12 407 6.72e-36 138
Msa0799060 AT2G42850.2 29.023 348 210 6 36 350 45 388 1.42e-34 133
Msa0799060 AT4G15396.4 24.331 411 254 10 8 376 5 400 1.21e-33 131
Msa0799060 AT5G36110.2 26.571 350 220 7 35 350 33 379 2.08e-32 127
Msa0799060 AT3G44970.2 30.132 302 190 7 30 320 27 318 4.57e-32 126
Msa0799060 AT4G15393.3 23.096 407 231 8 8 377 5 366 1.13e-29 119
Msa0799060 AT5G36140.1 26.182 275 200 3 35 308 32 304 8.10e-27 110
Msa0799060 AT2G29090.4 24.390 287 207 5 33 317 46 324 4.07e-22 97.4
Msa0799060 AT4G12300.1 23.188 483 287 18 10 431 22 481 2.64e-20 94.0
Msa0799060 AT5G57220.1 24.400 500 304 16 11 455 1 481 2.10e-19 90.9
Msa0799060 AT1G31800.1 28.571 245 131 6 226 429 300 541 2.71e-19 91.3
Msa0799060 AT5G36130.1 32.168 143 87 2 315 456 7 140 4.49e-19 84.0
Msa0799060 AT5G36220.1 26.446 484 269 19 11 432 10 468 3.54e-16 81.3
Msa0799060 AT4G12320.1 21.107 488 310 15 5 433 14 485 4.70e-16 80.9
Msa0799060 AT1G66540.2 27.632 228 120 5 236 428 69 286 7.99e-16 79.0
Msa0799060 AT5G67310.1 23.482 494 291 16 10 447 19 481 9.52e-16 79.7
Msa0799060 AT1G66540.1 27.632 228 120 5 236 428 128 345 1.40e-15 78.6
Msa0799060 AT4G37410.1 22.622 473 282 16 15 428 12 459 2.06e-15 79.0
Msa0799060 AT2G26710.1 23.856 306 192 5 168 446 214 505 6.18e-15 77.4
Msa0799060 AT5G04330.1 26.230 244 137 6 227 431 235 474 1.48e-14 76.3
Msa0799060 AT5G52320.1 23.184 358 216 10 131 433 126 479 1.87e-14 75.9
Msa0799060 AT5G52320.2 23.184 358 216 10 131 433 126 479 1.89e-14 75.9
Msa0799060 AT3G20950.1 20.675 474 318 9 9 429 15 483 2.10e-14 75.9
Msa0799060 AT4G37400.1 24.156 385 231 11 91 428 89 459 3.26e-14 75.1
Msa0799060 AT4G15110.1 25.620 242 128 8 240 429 309 550 4.19e-14 75.1
Msa0799060 AT4G37370.1 23.699 346 210 8 127 428 122 457 4.78e-14 74.7
Msa0799060 AT5G24910.1 23.922 255 150 5 237 452 280 529 4.81e-14 74.7
Msa0799060 AT2G26170.2 26.230 244 128 9 221 425 175 405 8.59e-14 73.6
Msa0799060 AT3G28740.1 23.410 346 211 8 127 428 131 466 9.67e-14 73.6
Msa0799060 AT5G47990.1 22.356 416 255 11 70 427 72 477 1.58e-13 73.2
Msa0799060 AT4G37360.1 29.714 175 86 3 281 428 294 458 3.61e-13 72.0
Msa0799060 AT4G37330.1 23.518 523 295 23 5 458 2 488 6.39e-13 70.9
Msa0799060 AT5G24900.2 22.222 252 153 5 239 452 161 407 6.71e-13 70.5
Msa0799060 AT4G37340.1 27.273 220 121 5 237 428 250 458 9.52e-13 70.5
Msa0799060 AT5G24900.1 22.222 252 153 5 239 452 278 524 1.06e-12 70.5
Msa0799060 AT5G06905.1 20.374 481 312 12 18 435 13 485 1.26e-12 70.1
Msa0799060 AT3G26310.1 21.339 478 295 14 15 431 9 466 6.45e-12 67.8
Msa0799060 AT1G50520.1 22.314 484 307 12 3 427 7 480 7.61e-12 67.8
Msa0799060 AT4G22710.1 25.000 220 123 6 243 428 276 487 9.55e-12 67.4
Msa0799060 AT3G26300.1 21.086 479 300 15 14 431 6 467 1.04e-11 67.4
Msa0799060 AT4G22690.1 25.000 220 123 6 243 428 307 518 1.23e-11 67.0
Msa0799060 AT3G26330.1 21.729 451 282 16 37 431 32 467 1.32e-11 67.0
Msa0799060 AT5G36220.2 28.319 226 118 7 237 432 111 322 1.68e-11 65.9
Msa0799060 AT2G45570.1 25.000 224 130 5 238 429 259 476 2.29e-11 66.2
Msa0799060 AT1G50560.1 24.215 223 136 2 243 432 264 486 2.74e-11 65.9
Msa0799060 AT3G20940.1 19.523 461 314 10 20 429 26 480 3.12e-11 65.9
Msa0799060 AT3G61040.1 27.014 211 116 4 251 428 258 463 4.03e-11 65.5
Msa0799060 AT3G14630.1 27.059 255 142 8 211 430 237 482 4.49e-11 65.5
Msa0799060 AT3G14630.2 27.059 255 142 8 211 430 292 537 4.55e-11 65.5

Find 121 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGCCAAAATTCAAAATT+TGG 0.154819 5_3:+12120761 Msa0799060:three_prime_UTR
CCTATAGTTGTAGCAGAATA+AGG 0.217364 5_3:-12115224 None:intergenic
ATTCTCAGCTTGCTCTTTGC+TGG 0.257780 5_3:+12116279 Msa0799060:CDS
TGCTTACTGGAGAGCATTAA+AGG 0.272186 5_3:+12115908 Msa0799060:CDS
ACTCTAATTTGTAGGCCTTT+AGG 0.278167 5_3:-12120446 None:intergenic
GAATGGATGATCTAACTAAT+TGG 0.284868 5_3:-12120511 None:intergenic
CTAGCTATTTACTTTCTTCC+TGG 0.288114 5_3:+12116330 Msa0799060:CDS
GCAGTTCACATTTAATTTGA+TGG 0.306128 5_3:+12115773 Msa0799060:intron
AGCTCAAGATGAAGCTAAAA+AGG 0.307230 5_3:+12115662 Msa0799060:CDS
ATCTCATTCTCAACTACAAT+TGG 0.307328 5_3:+12120372 Msa0799060:CDS
CCTTTCATTGGAGAAACTAT+TGG 0.327280 5_3:+12115191 Msa0799060:CDS
GAAGTTCATAGAGGGTAAAA+TGG 0.327358 5_3:+12116146 Msa0799060:CDS
GAAATGGTCTATGTTGGTTT+TGG 0.338998 5_3:+12115500 Msa0799060:CDS
TTGCCAGATGCACTTGAGTT+TGG 0.344847 5_3:-12120260 None:intergenic
ATTTACAAATCAAATTTGTT+TGG 0.360844 5_3:+12115369 Msa0799060:CDS
GGTCATTGCAGCCGTGCATT+TGG 0.361495 5_3:+12117165 Msa0799060:CDS
CCTTATTCTGCTACAACTAT+AGG 0.365901 5_3:+12115224 Msa0799060:CDS
GCCCTTGTACTTCAATTGAT+TGG 0.367143 5_3:-12120856 None:intergenic
GGGCTTGGACTCTAATTTGT+AGG 0.371100 5_3:-12120454 None:intergenic
ATGTTGTGAGGTTCCTTCAT+AGG 0.375245 5_3:+12116962 Msa0799060:CDS
GTGCAGAACAATGGTAATAA+TGG 0.377374 5_3:+12120236 Msa0799060:intron
AGTAGCATTGGTGGAATACT+TGG 0.379754 5_3:+12115477 Msa0799060:CDS
CAGCAGATGCAGGATTGAAT+AGG 0.381275 5_3:+12115409 Msa0799060:CDS
GCCGTCTTGTTGTGAGCTCT+TGG 0.396925 5_3:+12115619 Msa0799060:CDS
AGAATGGGTTGGCCTTTCAT+TGG 0.400700 5_3:+12115179 Msa0799060:CDS
AAAGGCCAACCCATTCTTCC+TGG 0.403386 5_3:-12115173 None:intergenic
GATTGTACACAATAGATAAC+TGG 0.405101 5_3:-12121031 None:intergenic
TCCTGGTGGAAGATTAAGCT+TGG 0.409555 5_3:-12115156 None:intergenic
TAATCTTCCACCAGGAAGAA+TGG 0.418458 5_3:+12115163 Msa0799060:CDS
ATCATATTATAGAGTGGGCT+TGG 0.422340 5_3:-12120469 None:intergenic
CCTGGTGGAAGATTAAGCTT+GGG 0.423329 5_3:-12115155 None:intergenic
TGGAAGATTAAGCTTGGGTT+TGG 0.426015 5_3:-12115150 None:intergenic
CTTTAAGAGCCTTCCTATGA+AGG 0.427448 5_3:-12116975 None:intergenic
TAGAACACATTTATTGAAAG+AGG 0.428422 5_3:+12115584 Msa0799060:CDS
GCTCTCCAGTAAGCAGTTCC+AGG 0.429947 5_3:-12115900 None:intergenic
AAGTACAAGGGCATGTCAAT+AGG 0.437884 5_3:+12120867 Msa0799060:three_prime_UTR
TACAAATCAAATTTGTTTGG+TGG 0.441126 5_3:+12115372 Msa0799060:CDS
TCTGATCCTGCGCATAATCT+TGG 0.442201 5_3:-12120314 None:intergenic
GTACAATGTGGGTGGGGTAG+TGG 0.442595 5_3:-12120944 None:intergenic
GGACCAAACTCAAGTGCATC+TGG 0.443054 5_3:+12120257 Msa0799060:CDS
GCATCTGCTGAAACTATTGT+TGG 0.446616 5_3:-12115396 None:intergenic
GTAATAGTAGATTACAGTCC+TGG 0.446911 5_3:-12120995 None:intergenic
GCAAGAGGGAAATGAGAATT+CGG 0.447089 5_3:+12116188 Msa0799060:CDS
AGAATTAGCAAAGCTTGAAA+TGG 0.452248 5_3:+12120334 Msa0799060:CDS
CTCAAGCTATACTACAATTG+AGG 0.453230 5_3:+12116358 Msa0799060:CDS
CACAATACTGAAGTTCATAG+AGG 0.468015 5_3:+12116137 Msa0799060:CDS
AGTATTCCACCAATGCTACT+TGG 0.474096 5_3:-12115474 None:intergenic
AAATGCACGGCTGCAATGAC+CGG 0.475595 5_3:-12117163 None:intergenic
AATCTTCCACCAGGAAGAAT+GGG 0.477830 5_3:+12115164 Msa0799060:CDS
TTGGTGGAATACTTGGGAAA+TGG 0.482545 5_3:+12115484 Msa0799060:CDS
TACAACTATAGGAAAATTCA+TGG 0.486204 5_3:+12115235 Msa0799060:CDS
AAGAATCAAAAGAATGCAAG+AGG 0.490859 5_3:+12116173 Msa0799060:CDS
GGAAGGCTCTTAAAGATGTT+CGG 0.498371 5_3:+12116983 Msa0799060:CDS
ACAATAGTTTCAGCAGATGC+AGG 0.500312 5_3:+12115399 Msa0799060:CDS
TTTATTTGTATTATTATCCC+AGG 0.501827 5_3:+12120977 Msa0799060:three_prime_UTR
ACTTGGGAAATGGTCTATGT+TGG 0.503191 5_3:+12115494 Msa0799060:CDS
TCTCATTCTCAACTACAATT+GGG 0.506689 5_3:+12120373 Msa0799060:CDS
TTAATTATAGATGATCGATC+AGG 0.514959 5_3:-12120701 None:intergenic
TATAAAATGTACAATGTGGG+TGG 0.515913 5_3:-12120952 None:intergenic
AAAGTAAATAGCTAGAGCTA+TGG 0.522820 5_3:-12116322 None:intergenic
AGCCTAGAGGGAGAAGAAAA+CGG 0.530298 5_3:-12120904 None:intergenic
TGTGAACGAGACACTTAGGC+TGG 0.531377 5_3:+12116936 Msa0799060:CDS
TCTTGTTGTGAGCTCTTGGA+AGG 0.532636 5_3:+12115623 Msa0799060:CDS
CTCCATGGATTAAAGTGTTG+AGG 0.533456 5_3:-12117208 None:intergenic
CTTAAAGATGTTCGGTACAA+AGG 0.537490 5_3:+12116991 Msa0799060:CDS
TCAAGCTATACTACAATTGA+GGG 0.538319 5_3:+12116359 Msa0799060:CDS
ATAAAATGTACAATGTGGGT+GGG 0.540155 5_3:-12120951 None:intergenic
AATATATAAAATGTACAATG+TGG 0.540164 5_3:-12120956 None:intergenic
CTTTAATCCATGGAGATGGC+AGG 0.540834 5_3:+12117216 Msa0799060:CDS
AGGTTCATATTACAAAATGA+AGG 0.541377 5_3:+12115429 Msa0799060:CDS
AGTTATCCAAGTAGCATTGG+TGG 0.542541 5_3:+12115468 Msa0799060:CDS
TAAAATGTACAATGTGGGTG+GGG 0.542629 5_3:-12120950 None:intergenic
ATGTGGGTGGAAAGTCCTTC+CGG 0.546149 5_3:+12117144 Msa0799060:CDS
CCAATAGTTTCTCCAATGAA+AGG 0.546790 5_3:-12115191 None:intergenic
ATATATAAAATGTACAATGT+GGG 0.550546 5_3:-12120955 None:intergenic
TATATATATACTAGGTAGCA+TGG 0.550841 5_3:-12120558 None:intergenic
CCTTTAGGAAAATCAACAAA+AGG 0.551181 5_3:-12120431 None:intergenic
TGTAGTTATCCAAGTAGCAT+TGG 0.551957 5_3:+12115465 Msa0799060:CDS
AACCAATCAATTGAAGTACA+AGG 0.553219 5_3:+12120854 Msa0799060:three_prime_UTR
GGACTAACCTGCCATCTCCA+TGG 0.558643 5_3:-12117223 None:intergenic
TAATAGTAGATTACAGTCCT+GGG 0.558947 5_3:-12120994 None:intergenic
AATCTTGGTCCTCCTCCAAA+CGG 0.560213 5_3:-12120299 None:intergenic
CCCAAGCTTAATCTTCCACC+AGG 0.560832 5_3:+12115155 Msa0799060:CDS
AACCTCAACACTTTAATCCA+TGG 0.561645 5_3:+12117206 Msa0799060:CDS
GCAGTTCCAGGAAAATTCAA+TGG 0.565674 5_3:-12115888 None:intergenic
TTCATCTTGAGCTGCAAATG+TGG 0.566713 5_3:-12115652 None:intergenic
AAGAAAACGGATAATGAAAG+TGG 0.570134 5_3:-12120891 None:intergenic
GAAATCTAATAGAGCCTAGA+GGG 0.574545 5_3:-12120916 None:intergenic
TGAAATCTAATAGAGCCTAG+AGG 0.586886 5_3:-12120917 None:intergenic
TGTGAGGTTCCTTCATAGGA+AGG 0.587591 5_3:+12116966 Msa0799060:CDS
CTCAATTGTAGTATAGCTTG+AGG 0.591144 5_3:-12116357 None:intergenic
AGGTTGTGAACGAGACACTT+AGG 0.595014 5_3:+12116932 Msa0799060:intron
ATGGATTAAAGTGTTGAGGT+TGG 0.596823 5_3:-12117204 None:intergenic
AGTATAGCTTGAGGACAACC+AGG 0.597903 5_3:-12116348 None:intergenic
ACATTATGAGTCTTCAACCT+GGG 0.598352 5_3:+12115802 Msa0799060:CDS
GATATGATCATATTATAGAG+TGG 0.600493 5_3:-12120475 None:intergenic
AACACTTTAATCCATGGAGA+TGG 0.601114 5_3:+12117212 Msa0799060:CDS
CACATTATGAGTCTTCAACC+TGG 0.602197 5_3:+12115801 Msa0799060:CDS
TCATGGAACAACACATAGCA+AGG 0.602744 5_3:+12115252 Msa0799060:CDS
GGAAGGACTTTCCACCCACA+TGG 0.602750 5_3:-12117142 None:intergenic
GGTTCATATTACAAAATGAA+GGG 0.604734 5_3:+12115430 Msa0799060:CDS
ATATGATCATATTATAGAGT+GGG 0.604856 5_3:-12120474 None:intergenic
TTCCACCAGGAAGAATGGGT+TGG 0.608564 5_3:+12115168 Msa0799060:CDS
GGCCAACCCATTCTTCCTGG+TGG 0.611990 5_3:-12115170 None:intergenic
GGAGGACCAAGATTATGCGC+AGG 0.612238 5_3:+12120308 Msa0799060:CDS
GCACGGCTGCAATGACCGGA+AGG 0.622858 5_3:-12117159 None:intergenic
TCCAAGAGCTCACAACAAGA+CGG 0.630764 5_3:-12115620 None:intergenic
GTAGCATTGGTGGAATACTT+GGG 0.634040 5_3:+12115478 Msa0799060:CDS
GTTATGATATTCCATGTGGG+TGG 0.634243 5_3:+12117131 Msa0799060:CDS
ACCAATCAATTGAAGTACAA+GGG 0.635116 5_3:+12120855 Msa0799060:three_prime_UTR
TTAGGCTGGGTAATGTTGTG+AGG 0.639436 5_3:+12116950 Msa0799060:CDS
ACAATACTGAAGTTCATAGA+GGG 0.642789 5_3:+12116138 Msa0799060:CDS
AAGTAAAGGATCCAAATGCA+CGG 0.650077 5_3:-12117176 None:intergenic
GTGAACGAGACACTTAGGCT+GGG 0.659344 5_3:+12116937 Msa0799060:CDS
AGTTACATCTGAGTCAGACA+TGG 0.671062 5_3:-12115060 None:intergenic
AGAATCAAAAGAATGCAAGA+GGG 0.675343 5_3:+12116174 Msa0799060:CDS
GGGTTGGTGGTGCAGAACAA+TGG 0.686914 5_3:+12120227 Msa0799060:intron
AAAGGTTATGATATTCCATG+TGG 0.690985 5_3:+12117127 Msa0799060:intron
ATACTAGGTAGCATGGCATG+TGG 0.691056 5_3:-12120551 None:intergenic
AGAGGGAAATGAGAATTCGG+AGG 0.702791 5_3:+12116191 Msa0799060:CDS
AAGGTTATGATATTCCATGT+GGG 0.740085 5_3:+12117128 Msa0799060:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTATATTAAAAAAA+AGG - chr5_3:12116755-12116774 None:intergenic 0.0%
!! AAAAATTATATAAAAAATAA+AGG + chr5_3:12118420-12118439 Msa0799060:intron 0.0%
!! AAAATTATATAAAAAATAAA+GGG + chr5_3:12118421-12118440 Msa0799060:intron 0.0%
!! ACTAAATATAATAACAAAAT+GGG - chr5_3:12115979-12115998 None:intergenic 10.0%
!! TTAAACATTATGTAATTATT+AGG + chr5_3:12117451-12117470 Msa0799060:intron 10.0%
!! GAATAAAAATAATAAGTAAT+AGG + chr5_3:12117488-12117507 Msa0799060:intron 10.0%
!! ATAAAAATAATAAGTAATAG+GGG + chr5_3:12117490-12117509 Msa0799060:intron 10.0%
!!! TACAATCTTTTTTTTTTTTT+TGG + chr5_3:12121047-12121066 Msa0799060:three_prime_UTR 10.0%
!!! ACAATCTTTTTTTTTTTTTT+GGG + chr5_3:12121048-12121067 Msa0799060:three_prime_UTR 10.0%
!!! ATTTTGTAGTTAGATTAAAA+GGG - chr5_3:12115330-12115349 None:intergenic 15.0%
!!! AATTTTGTAGTTAGATTAAA+AGG - chr5_3:12115331-12115350 None:intergenic 15.0%
!!! ATTTACAAATCAAATTTGTT+TGG + chr5_3:12115369-12115388 Msa0799060:CDS 15.0%
!! CTAAATATAATAACAAAATG+GGG - chr5_3:12115978-12115997 None:intergenic 15.0%
!! CACTAAATATAATAACAAAA+TGG - chr5_3:12115980-12115999 None:intergenic 15.0%
!! GTCATAAATGATAAATAAAT+TGG + chr5_3:12116715-12116734 Msa0799060:intron 15.0%
!! ATAAATGATAAATAAATTGG+AGG + chr5_3:12116718-12116737 Msa0799060:intron 15.0%
!! TAAATGATAAATAAATTGGA+GGG + chr5_3:12116719-12116738 Msa0799060:intron 15.0%
!! ATTATGTAATTATTAGGAAA+AGG + chr5_3:12117457-12117476 Msa0799060:intron 15.0%
!! TTATGTAATTATTAGGAAAA+GGG + chr5_3:12117458-12117477 Msa0799060:intron 15.0%
!! TACATTCTTATAATAATGTT+AGG + chr5_3:12119922-12119941 Msa0799060:intron 15.0%
!! ACATTCTTATAATAATGTTA+GGG + chr5_3:12119923-12119942 Msa0799060:intron 15.0%
!! ACATCAATATAATATTCAAA+TGG - chr5_3:12120200-12120219 None:intergenic 15.0%
!! TATTATATTGATGTTAATGT+TGG + chr5_3:12120206-12120225 Msa0799060:intron 15.0%
!! ATTATATTGATGTTAATGTT+GGG + chr5_3:12120207-12120226 Msa0799060:intron 15.0%
!! ATATATAAAATGTACAATGT+GGG - chr5_3:12120958-12120977 None:intergenic 15.0%
!! AATATATAAAATGTACAATG+TGG - chr5_3:12120959-12120978 None:intergenic 15.0%
!! TTCAAAGCAAAACAAAAAAA+TGG - chr5_3:12114990-12115009 None:intergenic 20.0%
!! AGATAAAGATAAACTAAAGT+TGG + chr5_3:12115737-12115756 Msa0799060:intron 20.0%
!!! TTATGTTTTGTTTTTTACTG+TGG + chr5_3:12116584-12116603 Msa0799060:intron 20.0%
!! AAATGATAAATAAATTGGAG+GGG + chr5_3:12116720-12116739 Msa0799060:intron 20.0%
!! ATAGAGAATAGTTATAGTAA+AGG + chr5_3:12117082-12117101 Msa0799060:intron 20.0%
!! TAGAGAATAGTTATAGTAAA+GGG + chr5_3:12117083-12117102 Msa0799060:intron 20.0%
!! CCAATATCAAAATCAAAATA+TGG - chr5_3:12117333-12117352 None:intergenic 20.0%
!!! CCATATTTTGATTTTGATAT+TGG + chr5_3:12117330-12117349 Msa0799060:intron 20.0%
!! TATGTAATTATTAGGAAAAG+GGG + chr5_3:12117459-12117478 Msa0799060:intron 20.0%
!! AATAACAAATTTAAGTGCTT+GGG - chr5_3:12117518-12117537 None:intergenic 20.0%
!!! AAAATTTGGTTCACTTTTAA+GGG + chr5_3:12117591-12117610 Msa0799060:intron 20.0%
!! AATAATTTATAGTTAGCTAG+GGG - chr5_3:12117905-12117924 None:intergenic 20.0%
!! GAATAATTTATAGTTAGCTA+GGG - chr5_3:12117906-12117925 None:intergenic 20.0%
!! TGAATAATTTATAGTTAGCT+AGG - chr5_3:12117907-12117926 None:intergenic 20.0%
!! AACTATAAATTATTCAGTGT+TGG + chr5_3:12117911-12117930 Msa0799060:intron 20.0%
!! ACTATAAATTATTCAGTGTT+GGG + chr5_3:12117912-12117931 Msa0799060:intron 20.0%
!!! AAAGTTTCAATTTAGAATCT+GGG + chr5_3:12118230-12118249 Msa0799060:intron 20.0%
!!! TATATCTCAATCAAGATTTT+TGG + chr5_3:12118316-12118335 Msa0799060:intron 20.0%
!!! TAAAAGAGGGTTTAATTTTT+GGG - chr5_3:12118359-12118378 None:intergenic 20.0%
!!! TACGTTAATGAATTTTTGTT+AGG - chr5_3:12118538-12118557 None:intergenic 20.0%
!!! TCATCATAATAACATCTTTT+GGG - chr5_3:12118885-12118904 None:intergenic 20.0%
!!! ATCATCATAATAACATCTTT+TGG - chr5_3:12118886-12118905 None:intergenic 20.0%
!! AACCAAAAATAAAAGAGAAA+AGG - chr5_3:12119018-12119037 None:intergenic 20.0%
!!! TTTTGGTTTAAATGTGTAAT+TGG + chr5_3:12119030-12119049 Msa0799060:intron 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG + chr5_3:12119181-12119200 Msa0799060:intron 20.0%
!!! CTTTGAAAAAATATTGGTAT+TGG + chr5_3:12119212-12119231 Msa0799060:intron 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG - chr5_3:12119181-12119200 None:intergenic 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG - chr5_3:12119181-12119200 None:intergenic 20.0%
!! TAAAGGTTTAAATGTGTAAT+TGG - chr5_3:12119445-12119464 None:intergenic 20.0%
!! TTAATTACATAAGATTAGTG+CGG + chr5_3:12119705-12119724 Msa0799060:intron 20.0%
!! ATATGATCATATTATAGAGT+GGG - chr5_3:12120477-12120496 None:intergenic 20.0%
!!! TCTTTTTCTTAGTTATAGAA+TGG - chr5_3:12120531-12120550 None:intergenic 20.0%
!!! ATATATATAGCATTTTGTGT+TGG + chr5_3:12120626-12120645 Msa0799060:intron 20.0%
!!! TTACACCAAATTTTGAATTT+TGG - chr5_3:12120769-12120788 None:intergenic 20.0%
!!! TATGATTTGAAGATACTTTT+AGG + chr5_3:12120819-12120838 Msa0799060:three_prime_UTR 20.0%
!!! ATGATTTGAAGATACTTTTA+GGG + chr5_3:12120820-12120839 Msa0799060:three_prime_UTR 20.0%
!! TTTATTTGTATTATTATCCC+AGG + chr5_3:12120977-12120996 Msa0799060:three_prime_UTR 20.0%
!!! GTCTTTAAAGTGAAAAAAAC+AGG - chr5_3:12114882-12114901 None:intergenic 25.0%
!! TTATAAAAAGCACACTCTAT+TGG + chr5_3:12114913-12114932 Msa0799060:five_prime_UTR 25.0%
!! TTAAGACCAGACAATTTTTA+AGG + chr5_3:12115030-12115049 Msa0799060:five_prime_UTR 25.0%
! TACAACTATAGGAAAATTCA+TGG + chr5_3:12115235-12115254 Msa0799060:CDS 25.0%
! CTAACTACAAAATTATATGC+AGG + chr5_3:12115337-12115356 Msa0799060:intron 25.0%
! TACAAAATTATATGCAGGTA+TGG + chr5_3:12115342-12115361 Msa0799060:intron 25.0%
!! TACAAATCAAATTTGTTTGG+TGG + chr5_3:12115372-12115391 Msa0799060:CDS 25.0%
! AGGTTCATATTACAAAATGA+AGG + chr5_3:12115429-12115448 Msa0799060:CDS 25.0%
! GGTTCATATTACAAAATGAA+GGG + chr5_3:12115430-12115449 Msa0799060:CDS 25.0%
! TAGAACACATTTATTGAAAG+AGG + chr5_3:12115584-12115603 Msa0799060:CDS 25.0%
!! AAGATAAACTAAAGTTGGTT+TGG + chr5_3:12115742-12115761 Msa0799060:intron 25.0%
!!! GAGTATGTTACTTTTATGAA+AGG + chr5_3:12115852-12115871 Msa0799060:CDS 25.0%
! TTAGTGCATGTTTAATTACA+CGG + chr5_3:12115994-12116013 Msa0799060:intron 25.0%
! AAACTCTTTAGCTAAAATCA+CGG - chr5_3:12116027-12116046 None:intergenic 25.0%
!!! TGATTTTAGCTAAAGAGTTT+GGG + chr5_3:12116027-12116046 Msa0799060:intron 25.0%
! ACATCGACAAATATAATTAG+TGG - chr5_3:12116474-12116493 None:intergenic 25.0%
!! TTTTACTGTGGAAAAACAAT+AGG + chr5_3:12116596-12116615 Msa0799060:intron 25.0%
!! AAATCTCTTTTGTGAGAAAA+AGG + chr5_3:12117057-12117076 Msa0799060:intron 25.0%
! AGAGAATAGTTATAGTAAAG+GGG + chr5_3:12117084-12117103 Msa0799060:intron 25.0%
!! ATTCTTTTTGTGTTTGTGAA+AGG + chr5_3:12117109-12117128 Msa0799060:intron 25.0%
!! ATGTTACTTATCAAGTAGAA+AGG - chr5_3:12117247-12117266 None:intergenic 25.0%
! ATGTAATTATTAGGAAAAGG+GGG + chr5_3:12117460-12117479 Msa0799060:intron 25.0%
! ATAACAAATTTAAGTGCTTG+GGG - chr5_3:12117517-12117536 None:intergenic 25.0%
! CAATAACAAATTTAAGTGCT+TGG - chr5_3:12117519-12117538 None:intergenic 25.0%
!!! AGCACTTAAATTTGTTATTG+TGG + chr5_3:12117519-12117538 Msa0799060:intron 25.0%
!!! ACTTAAATTTGTTATTGTGG+TGG + chr5_3:12117522-12117541 Msa0799060:intron 25.0%
!!! CAAAATTTGGTTCACTTTTA+AGG + chr5_3:12117590-12117609 Msa0799060:intron 25.0%
! CAAAAATGTAACTTCGTATA+GGG + chr5_3:12117627-12117646 Msa0799060:intron 25.0%
! CAGATTCTAAATTGAAACTT+TGG - chr5_3:12118231-12118250 None:intergenic 25.0%
!! CAAAGTTTCAATTTAGAATC+TGG + chr5_3:12118229-12118248 Msa0799060:intron 25.0%
!!! GTAAAAGAGGGTTTAATTTT+TGG - chr5_3:12118360-12118379 None:intergenic 25.0%
! TACAATGAATAGTGTAACTT+TGG + chr5_3:12118699-12118718 Msa0799060:intron 25.0%
! CAAAAATAAAAGAGAAAAGG+TGG - chr5_3:12119015-12119034 None:intergenic 25.0%
!!! CACCTTTTCTCTTTTATTTT+TGG + chr5_3:12119013-12119032 Msa0799060:intron 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG - chr5_3:12119298-12119317 None:intergenic 25.0%
! CTTTGTAAAAATATTGGCAT+TGG + chr5_3:12119121-12119140 Msa0799060:intron 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG - chr5_3:12119298-12119317 None:intergenic 25.0%
!!! CAATATTTTTTCAAAGTGCA+GGG - chr5_3:12119208-12119227 None:intergenic 25.0%
!! CTTTGGAAAAATATTGGTAT+TGG - chr5_3:12119263-12119282 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG + chr5_3:12119298-12119317 Msa0799060:intron 25.0%
!!! TACTTTTTTTTGTTTGGCAT+TGG - chr5_3:12119325-12119344 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG + chr5_3:12119298-12119317 Msa0799060:intron 25.0%
!!! AACCTTTATTTTTTCCATCA+TGG + chr5_3:12119457-12119476 Msa0799060:intron 25.0%
! AGAGTTTAAGTCAGTTAATT+AGG + chr5_3:12119544-12119563 Msa0799060:intron 25.0%
!! AGAAGTGAGTTTTTATGTTA+GGG - chr5_3:12119656-12119675 None:intergenic 25.0%
! CTCACACACATTTATTTATT+AGG + chr5_3:12119674-12119693 Msa0799060:intron 25.0%
!! GTATTAAGATTGATGATTTC+TGG - chr5_3:12119829-12119848 None:intergenic 25.0%
! TCTTATAATAATGTTAGGGA+AGG + chr5_3:12119927-12119946 Msa0799060:intron 25.0%
!! TTTTATAGTTGGAGTAATCT+TGG + chr5_3:12119983-12120002 Msa0799060:intron 25.0%
!!! AACACTTCAGATTTTAGTAT+AGG - chr5_3:12120075-12120094 None:intergenic 25.0%
!! AGTAATATTTTCTTACCGTT+TGG + chr5_3:12120284-12120303 Msa0799060:CDS 25.0%
! GATATGATCATATTATAGAG+TGG - chr5_3:12120478-12120497 None:intergenic 25.0%
! TATATATATACTAGGTAGCA+TGG - chr5_3:12120561-12120580 None:intergenic 25.0%
! TTAATTATAGATGATCGATC+AGG - chr5_3:12120704-12120723 None:intergenic 25.0%
!! CGTTTTCCTAAAAAAATATG+CGG - chr5_3:12120792-12120811 None:intergenic 25.0%
!!! TTTTTTTAGGAAAACGATTC+AGG + chr5_3:12120796-12120815 Msa0799060:three_prime_UTR 25.0%
GCTTAACCTTAAAAATTGTC+TGG - chr5_3:12115039-12115058 None:intergenic 30.0%
AGCATGACACAAAAAATTGA+GGG - chr5_3:12115559-12115578 None:intergenic 30.0%
TAGCATGACACAAAAAATTG+AGG - chr5_3:12115560-12115579 None:intergenic 30.0%
!! GCAGTTCACATTTAATTTGA+TGG + chr5_3:12115773-12115792 Msa0799060:intron 30.0%
!!! GTGATTTTAGCTAAAGAGTT+TGG + chr5_3:12116026-12116045 Msa0799060:intron 30.0%
! AAAGAGTTTGGGTTTGTATT+TGG + chr5_3:12116038-12116057 Msa0799060:intron 30.0%
ACAATACTGAAGTTCATAGA+GGG + chr5_3:12116138-12116157 Msa0799060:CDS 30.0%
AAGAATCAAAAGAATGCAAG+AGG + chr5_3:12116173-12116192 Msa0799060:CDS 30.0%
AGAATCAAAAGAATGCAAGA+GGG + chr5_3:12116174-12116193 Msa0799060:CDS 30.0%
! AGGAAAATGATCTTTTGAAC+TGG + chr5_3:12116211-12116230 Msa0799060:CDS 30.0%
! GGAAAATGATCTTTTGAACT+GGG + chr5_3:12116212-12116231 Msa0799060:CDS 30.0%
AAAGTAAATAGCTAGAGCTA+TGG - chr5_3:12116325-12116344 None:intergenic 30.0%
TCAAGCTATACTACAATTGA+GGG + chr5_3:12116359-12116378 Msa0799060:CDS 30.0%
TTGGGAAGACTACAAAAAAA+TGG + chr5_3:12116674-12116693 Msa0799060:intron 30.0%
TCTGTTGTGAACACTTTAAA+GGG - chr5_3:12116814-12116833 None:intergenic 30.0%
TTCTGTTGTGAACACTTTAA+AGG - chr5_3:12116815-12116834 None:intergenic 30.0%
TTAGTTGCTCATATTTGTAC+AGG + chr5_3:12116912-12116931 Msa0799060:intron 30.0%
AAAGGTTATGATATTCCATG+TGG + chr5_3:12117127-12117146 Msa0799060:intron 30.0%
AAGGTTATGATATTCCATGT+GGG + chr5_3:12117128-12117147 Msa0799060:intron 30.0%
TGTAATTATTAGGAAAAGGG+GGG + chr5_3:12117461-12117480 Msa0799060:intron 30.0%
!! TAAATTTGTTATTGTGGTGG+TGG + chr5_3:12117525-12117544 Msa0799060:intron 30.0%
! CCTATACGAAGTTACATTTT+TGG - chr5_3:12117629-12117648 None:intergenic 30.0%
CCAAAAATGTAACTTCGTAT+AGG + chr5_3:12117626-12117645 Msa0799060:intron 30.0%
TTGTTGTGTTCTTTCAAAGT+AGG - chr5_3:12117680-12117699 None:intergenic 30.0%
! ACACAACAAGTTTTTACGTT+TGG + chr5_3:12117691-12117710 Msa0799060:intron 30.0%
! GATTACTGTTAATGTTGACT+TGG + chr5_3:12117807-12117826 Msa0799060:intron 30.0%
! TAAAAGTGTGGTATAGCTAT+AGG - chr5_3:12117834-12117853 None:intergenic 30.0%
!! ATTGGTGATGAATAAAAGTG+TGG - chr5_3:12117846-12117865 None:intergenic 30.0%
!! CTAAAGCTCTAAATCTTTAG+TGG + chr5_3:12117875-12117894 Msa0799060:intron 30.0%
AGTGATAGTAATTAGTGACT+AGG + chr5_3:12118135-12118154 Msa0799060:intron 30.0%
TCAACTATATCTCACAATAG+AGG + chr5_3:12118165-12118184 Msa0799060:intron 30.0%
GAATCTGGGTTATTACTATT+AGG + chr5_3:12118244-12118263 Msa0799060:intron 30.0%
AGGGATACAAATAATGAGAA+TGG + chr5_3:12118440-12118459 Msa0799060:intron 30.0%
AACACGATGTATTTCTCTTT+GGG - chr5_3:12118483-12118502 None:intergenic 30.0%
TAACACGATGTATTTCTCTT+TGG - chr5_3:12118484-12118503 None:intergenic 30.0%
TATGCGCATGTTTCAAATTA+GGG - chr5_3:12118747-12118766 None:intergenic 30.0%
ATATGCGCATGTTTCAAATT+AGG - chr5_3:12118748-12118767 None:intergenic 30.0%
CATATAGATAGGATCTTTAG+TGG + chr5_3:12118763-12118782 Msa0799060:intron 30.0%
!! TCTGCAGTTTTAACAGATTT+TGG + chr5_3:12119055-12119074 Msa0799060:intron 30.0%
!!! CACTTTTTTTTGTTTGGCAT+TGG + chr5_3:12119090-12119109 Msa0799060:intron 30.0%
!! CCAATATTTTTACAAAGTGC+AGG - chr5_3:12119297-12119316 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG + chr5_3:12119115-12119134 Msa0799060:intron 30.0%
!!! CACTTTTTTTTGTTTGGCAT+TGG + chr5_3:12119090-12119109 Msa0799060:intron 30.0%
!! CCAATATTTTTACAAAGTGC+AGG - chr5_3:12119297-12119316 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG + chr5_3:12119115-12119134 Msa0799060:intron 30.0%
!!! CCAATATTTTTTCAAAGTGC+AGG - chr5_3:12119209-12119228 None:intergenic 30.0%
! CCTGCACTTTGAAAAAATAT+TGG + chr5_3:12119206-12119225 Msa0799060:intron 30.0%
! CAATATTTTTCCAAAGTGCA+GGG + chr5_3:12119267-12119286 Msa0799060:intron 30.0%
CCTGCACTTTGTAAAAATAT+TGG - chr5_3:12119115-12119134 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG + chr5_3:12119297-12119316 Msa0799060:intron 30.0%
! TGCCAAACAAAAAAAAGTAC+AGG + chr5_3:12119326-12119345 Msa0799060:intron 30.0%
! GCCAAACAAAAAAAAGTACA+GGG + chr5_3:12119327-12119346 Msa0799060:intron 30.0%
!!! TCCCTGTACTTTTTTTTGTT+TGG - chr5_3:12119331-12119350 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG - chr5_3:12119115-12119134 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG + chr5_3:12119297-12119316 Msa0799060:intron 30.0%
!!! CACTTTTTTTTGTTTGGCAT+TGG - chr5_3:12119090-12119109 None:intergenic 30.0%
!! CTTTCAACAGATTTTGACAT+TGG - chr5_3:12119414-12119433 None:intergenic 30.0%
! GACCATGATGGAAAAAATAA+AGG - chr5_3:12119462-12119481 None:intergenic 30.0%
TATCATATTAGAGCACAAAG+TGG - chr5_3:12119609-12119628 None:intergenic 30.0%
! AAGTGAGTTTTTATGTTAGG+GGG - chr5_3:12119654-12119673 None:intergenic 30.0%
! GAAGTGAGTTTTTATGTTAG+GGG - chr5_3:12119655-12119674 None:intergenic 30.0%
! GAGAAGTGAGTTTTTATGTT+AGG - chr5_3:12119657-12119676 None:intergenic 30.0%
TATTGATGTTAATGTTGGGT+TGG + chr5_3:12120211-12120230 Msa0799060:intron 30.0%
! AATATTTTCTTACCGTTTGG+AGG + chr5_3:12120287-12120306 Msa0799060:CDS 30.0%
AGAATTAGCAAAGCTTGAAA+TGG + chr5_3:12120334-12120353 Msa0799060:CDS 30.0%
ATCTCATTCTCAACTACAAT+TGG + chr5_3:12120372-12120391 Msa0799060:CDS 30.0%
TCTCATTCTCAACTACAATT+GGG + chr5_3:12120373-12120392 Msa0799060:CDS 30.0%
! CCTTTAGGAAAATCAACAAA+AGG - chr5_3:12120434-12120453 None:intergenic 30.0%
!!! CCTTTTGTTGATTTTCCTAA+AGG + chr5_3:12120431-12120450 Msa0799060:CDS 30.0%
GAATGGATGATCTAACTAAT+TGG - chr5_3:12120514-12120533 None:intergenic 30.0%
! ATAGCATTTTGTGTTGGATT+TGG + chr5_3:12120632-12120651 Msa0799060:intron 30.0%
!!! TTTGAATTTTGGCTGCTAAT+CGG - chr5_3:12120758-12120777 None:intergenic 30.0%
AGCAGCCAAAATTCAAAATT+TGG + chr5_3:12120761-12120780 Msa0799060:three_prime_UTR 30.0%
!!! GTGTAACCGCATATTTTTTT+AGG + chr5_3:12120783-12120802 Msa0799060:three_prime_UTR 30.0%
AACCAATCAATTGAAGTACA+AGG + chr5_3:12120854-12120873 Msa0799060:three_prime_UTR 30.0%
ACCAATCAATTGAAGTACAA+GGG + chr5_3:12120855-12120874 Msa0799060:three_prime_UTR 30.0%
AAGAAAACGGATAATGAAAG+TGG - chr5_3:12120894-12120913 None:intergenic 30.0%
ATAAAATGTACAATGTGGGT+GGG - chr5_3:12120954-12120973 None:intergenic 30.0%
TATAAAATGTACAATGTGGG+TGG - chr5_3:12120955-12120974 None:intergenic 30.0%
TAATAGTAGATTACAGTCCT+GGG - chr5_3:12120997-12121016 None:intergenic 30.0%
GATTGTACACAATAGATAAC+TGG - chr5_3:12121034-12121053 None:intergenic 30.0%
CCAATAGTTTCTCCAATGAA+AGG - chr5_3:12115194-12115213 None:intergenic 35.0%
CCTTTCATTGGAGAAACTAT+TGG + chr5_3:12115191-12115210 Msa0799060:CDS 35.0%
CCTATAGTTGTAGCAGAATA+AGG - chr5_3:12115227-12115246 None:intergenic 35.0%
CCTTATTCTGCTACAACTAT+AGG + chr5_3:12115224-12115243 Msa0799060:CDS 35.0%
TGTAGTTATCCAAGTAGCAT+TGG + chr5_3:12115465-12115484 Msa0799060:CDS 35.0%
!!! GAAATGGTCTATGTTGGTTT+TGG + chr5_3:12115500-12115519 Msa0799060:CDS 35.0%
AGCTCAAGATGAAGCTAAAA+AGG + chr5_3:12115662-12115681 Msa0799060:CDS 35.0%
ACATTATGAGTCTTCAACCT+GGG + chr5_3:12115802-12115821 Msa0799060:CDS 35.0%
TGGGTTTGTATTTGGTATCA+CGG + chr5_3:12116046-12116065 Msa0799060:intron 35.0%
CACAATACTGAAGTTCATAG+AGG + chr5_3:12116137-12116156 Msa0799060:CDS 35.0%
GAAGTTCATAGAGGGTAAAA+TGG + chr5_3:12116146-12116165 Msa0799060:CDS 35.0%
CTAGCTATTTACTTTCTTCC+TGG + chr5_3:12116330-12116349 Msa0799060:CDS 35.0%
CTCAATTGTAGTATAGCTTG+AGG - chr5_3:12116360-12116379 None:intergenic 35.0%
CTCAAGCTATACTACAATTG+AGG + chr5_3:12116358-12116377 Msa0799060:CDS 35.0%
TATTTGTCGATGTTGTGCTT+CGG + chr5_3:12116481-12116500 Msa0799060:intron 35.0%
CTTAAAGATGTTCGGTACAA+AGG + chr5_3:12116991-12117010 Msa0799060:CDS 35.0%
AAGTAAAGGATCCAAATGCA+CGG - chr5_3:12117179-12117198 None:intergenic 35.0%
! TGAGGTTGGTCAAAAAGTAA+AGG - chr5_3:12117193-12117212 None:intergenic 35.0%
!! ATGGATTAAAGTGTTGAGGT+TGG - chr5_3:12117207-12117226 None:intergenic 35.0%
AACCTCAACACTTTAATCCA+TGG + chr5_3:12117206-12117225 Msa0799060:CDS 35.0%
AACACTTTAATCCATGGAGA+TGG + chr5_3:12117212-12117231 Msa0799060:CDS 35.0%
GTGTGGTTGTGAACAAAATT+TGG + chr5_3:12117577-12117596 Msa0799060:intron 35.0%
ACAATAGAGGATCAAGTACA+TGG + chr5_3:12118178-12118197 Msa0799060:intron 35.0%
CAATAGAGGATCAAGTACAT+GGG + chr5_3:12118179-12118198 Msa0799060:intron 35.0%
! TAATGAGAATGGACTTGACT+CGG + chr5_3:12118451-12118470 Msa0799060:intron 35.0%
TCGTGTTAAATCAGTCTAGA+TGG + chr5_3:12118496-12118515 Msa0799060:intron 35.0%
TGAAACATGCGCATATAGAT+AGG + chr5_3:12118752-12118771 Msa0799060:intron 35.0%
! TGAAGTGTCATAATCAACGA+TGG + chr5_3:12118821-12118840 Msa0799060:intron 35.0%
! GAAGTGTCATAATCAACGAT+GGG + chr5_3:12118822-12118841 Msa0799060:intron 35.0%
! ATTATGATGATGAGCAAGCA+TGG + chr5_3:12118895-12118914 Msa0799060:intron 35.0%
AATTAATGACCTGGAAACTC+AGG - chr5_3:12118949-12118968 None:intergenic 35.0%
ATGGGCATTAATTAATGACC+TGG - chr5_3:12118958-12118977 None:intergenic 35.0%
GTCATTAATTAATGCCCATG+TGG + chr5_3:12118959-12118978 Msa0799060:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + chr5_3:12119084-12119103 Msa0799060:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG - chr5_3:12119387-12119406 None:intergenic 35.0%
! TGCCAAACAAAAAAAAGTGC+AGG - chr5_3:12119386-12119405 None:intergenic 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + chr5_3:12119084-12119103 Msa0799060:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG - chr5_3:12119387-12119406 None:intergenic 35.0%
! TGCCAAACAAAAAAAAGTGC+AGG - chr5_3:12119386-12119405 None:intergenic 35.0%
! CCTGCACTTTGGAAAAATAT+TGG - chr5_3:12119269-12119288 None:intergenic 35.0%
! CCAATATTTTTCCAAAGTGC+AGG + chr5_3:12119266-12119285 Msa0799060:intron 35.0%
! TGCCAAACAAAAAAAAGTGC+AGG + chr5_3:12119386-12119405 Msa0799060:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG + chr5_3:12119387-12119406 Msa0799060:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG - chr5_3:12119084-12119103 None:intergenic 35.0%
! TCAAAATCTGTTGAAAGTGC+AGG + chr5_3:12119417-12119436 Msa0799060:intron 35.0%
! CAAAATCTGTTGAAAGTGCA+GGG + chr5_3:12119418-12119437 Msa0799060:intron 35.0%
ATGTACATATGTAGCCAAGT+GGG + chr5_3:12119738-12119757 Msa0799060:intron 35.0%
!! AACTTATCACTTTTCCCACT+TGG - chr5_3:12119755-12119774 None:intergenic 35.0%
! GGTTTTTACTGCATGAGATA+TGG - chr5_3:12119955-12119974 None:intergenic 35.0%
TCATGCAGTAAAAACCACAT+CGG + chr5_3:12119959-12119978 Msa0799060:intron 35.0%
CTTGGCTGTCTAATTAAGAT+CGG + chr5_3:12120001-12120020 Msa0799060:intron 35.0%
!! CTGAAGTGTTTGCTTTTGAT+CGG + chr5_3:12120085-12120104 Msa0799060:intron 35.0%
GTGCAGAACAATGGTAATAA+TGG + chr5_3:12120236-12120255 Msa0799060:intron 35.0%
! ACTCTAATTTGTAGGCCTTT+AGG - chr5_3:12120449-12120468 None:intergenic 35.0%
! ATCATATTATAGAGTGGGCT+TGG - chr5_3:12120472-12120491 None:intergenic 35.0%
GAAATCTAATAGAGCCTAGA+GGG - chr5_3:12120919-12120938 None:intergenic 35.0%
TGAAATCTAATAGAGCCTAG+AGG - chr5_3:12120920-12120939 None:intergenic 35.0%
TAAAATGTACAATGTGGGTG+GGG - chr5_3:12120953-12120972 None:intergenic 35.0%
GTAATAGTAGATTACAGTCC+TGG - chr5_3:12120998-12121017 None:intergenic 35.0%
AGTTACATCTGAGTCAGACA+TGG - chr5_3:12115063-12115082 None:intergenic 40.0%
TGGAAGATTAAGCTTGGGTT+TGG - chr5_3:12115153-12115172 None:intergenic 40.0%
TAATCTTCCACCAGGAAGAA+TGG + chr5_3:12115163-12115182 Msa0799060:CDS 40.0%
AATCTTCCACCAGGAAGAAT+GGG + chr5_3:12115164-12115183 Msa0799060:CDS 40.0%
TCATGGAACAACACATAGCA+AGG + chr5_3:12115252-12115271 Msa0799060:CDS 40.0%
GCATCTGCTGAAACTATTGT+TGG - chr5_3:12115399-12115418 None:intergenic 40.0%
ACAATAGTTTCAGCAGATGC+AGG + chr5_3:12115399-12115418 Msa0799060:CDS 40.0%
! AGTTATCCAAGTAGCATTGG+TGG + chr5_3:12115468-12115487 Msa0799060:CDS 40.0%
AGTATTCCACCAATGCTACT+TGG - chr5_3:12115477-12115496 None:intergenic 40.0%
!! AGTAGCATTGGTGGAATACT+TGG + chr5_3:12115477-12115496 Msa0799060:CDS 40.0%
!! GTAGCATTGGTGGAATACTT+GGG + chr5_3:12115478-12115497 Msa0799060:CDS 40.0%
TTGGTGGAATACTTGGGAAA+TGG + chr5_3:12115484-12115503 Msa0799060:CDS 40.0%
ACTTGGGAAATGGTCTATGT+TGG + chr5_3:12115494-12115513 Msa0799060:CDS 40.0%
!!! TGGTCTATGTTGGTTTTGGT+TGG + chr5_3:12115504-12115523 Msa0799060:CDS 40.0%
TTCATCTTGAGCTGCAAATG+TGG - chr5_3:12115655-12115674 None:intergenic 40.0%
CACATTATGAGTCTTCAACC+TGG + chr5_3:12115801-12115820 Msa0799060:CDS 40.0%
! TTCTCTGTCTCTATTTTCCC+AGG - chr5_3:12115822-12115841 None:intergenic 40.0%
! TCAGCACCATTGAATTTTCC+TGG + chr5_3:12115882-12115901 Msa0799060:CDS 40.0%
GCAGTTCCAGGAAAATTCAA+TGG - chr5_3:12115891-12115910 None:intergenic 40.0%
! ATTTTCCTGGAACTGCTTAC+TGG + chr5_3:12115895-12115914 Msa0799060:CDS 40.0%
!! TGCTTACTGGAGAGCATTAA+AGG + chr5_3:12115908-12115927 Msa0799060:CDS 40.0%
CAAACATATGTCAGAGTCTC+AGG - chr5_3:12116095-12116114 None:intergenic 40.0%
GCAAGAGGGAAATGAGAATT+CGG + chr5_3:12116188-12116207 Msa0799060:CDS 40.0%
GTGTCTGTGTTCATACTTCA+TGG - chr5_3:12116414-12116433 None:intergenic 40.0%
!! AATTAGTGGTGTTGACGTGT+CGG - chr5_3:12116460-12116479 None:intergenic 40.0%
!!! TGTTTCCCCTGCTAGTTTTT+TGG - chr5_3:12116646-12116665 None:intergenic 40.0%
ATGTTGTGAGGTTCCTTCAT+AGG + chr5_3:12116962-12116981 Msa0799060:CDS 40.0%
! CTTTAAGAGCCTTCCTATGA+AGG - chr5_3:12116978-12116997 None:intergenic 40.0%
GGAAGGCTCTTAAAGATGTT+CGG + chr5_3:12116983-12117002 Msa0799060:CDS 40.0%
GTTATGATATTCCATGTGGG+TGG + chr5_3:12117131-12117150 Msa0799060:CDS 40.0%
!! CTCCATGGATTAAAGTGTTG+AGG - chr5_3:12117211-12117230 None:intergenic 40.0%
TCGAACGATCACCAATGTAT+CGG - chr5_3:12117295-12117314 None:intergenic 40.0%
TTCAAAGGAAAGCCCAAGTA+GGG - chr5_3:12117556-12117575 None:intergenic 40.0%
GTGTTGGGTCAACATTCATT+TGG + chr5_3:12117927-12117946 Msa0799060:intron 40.0%
TCTCTCTCAACCAATGCTTA+TGG + chr5_3:12117976-12117995 Msa0799060:intron 40.0%
ATTCCTTGAGCCATAAGCAT+TGG - chr5_3:12117989-12118008 None:intergenic 40.0%
TTGAAACTTTGGCACATGCA+TGG - chr5_3:12118220-12118239 None:intergenic 40.0%
! GCGTCAGGTATTGTAAAAGA+GGG - chr5_3:12118372-12118391 None:intergenic 40.0%
!! AAAATAGCTTTGTACGCGTC+AGG - chr5_3:12118387-12118406 None:intergenic 40.0%
! AATGAGAATGGACTTGACTC+GGG + chr5_3:12118452-12118471 Msa0799060:intron 40.0%
TAGGATCTTTAGTGGTTAGC+AGG + chr5_3:12118771-12118790 Msa0799060:intron 40.0%
ATTAATGCCCATGTGGAAAG+TGG + chr5_3:12118966-12118985 Msa0799060:intron 40.0%
TTAATGCCCATGTGGAAAGT+GGG + chr5_3:12118967-12118986 Msa0799060:intron 40.0%
TTTCCATCATGGTCCTAACT+TGG + chr5_3:12119468-12119487 Msa0799060:intron 40.0%
! TGACACGTATTGACCAAGTT+AGG - chr5_3:12119484-12119503 None:intergenic 40.0%
CATGTACATATGTAGCCAAG+TGG + chr5_3:12119737-12119756 Msa0799060:intron 40.0%
!! AGATTGATGATTTCTGGTGC+TGG - chr5_3:12119823-12119842 None:intergenic 40.0%
TGACTACATATGACAACTCG+AGG - chr5_3:12119868-12119887 None:intergenic 40.0%
CATCGAATCATGACACATGA+AGG - chr5_3:12119893-12119912 None:intergenic 40.0%
CATGCAGTAAAAACCACATC+GGG + chr5_3:12119960-12119979 Msa0799060:intron 40.0%
!! ACCACATCGGGTTTTATAGT+TGG + chr5_3:12119972-12119991 Msa0799060:intron 40.0%
TCCAACTATAAAACCCGATG+TGG - chr5_3:12119976-12119995 None:intergenic 40.0%
!! AGTGTTTGCTTTTGATCGGA+TGG + chr5_3:12120089-12120108 Msa0799060:intron 40.0%
!! TTTGCTTTTGATCGGATGGT+CGG + chr5_3:12120093-12120112 Msa0799060:intron 40.0%
!! TGATGTTAATGTTGGGTTGG+TGG + chr5_3:12120214-12120233 Msa0799060:intron 40.0%
! ATTTTCTTACCGTTTGGAGG+AGG + chr5_3:12120290-12120309 Msa0799060:CDS 40.0%
GCCCTTGTACTTCAATTGAT+TGG - chr5_3:12120859-12120878 None:intergenic 40.0%
! AAGTACAAGGGCATGTCAAT+AGG + chr5_3:12120867-12120886 Msa0799060:three_prime_UTR 40.0%
CCTGGTGGAAGATTAAGCTT+GGG - chr5_3:12115158-12115177 None:intergenic 45.0%
TCCTGGTGGAAGATTAAGCT+TGG - chr5_3:12115159-12115178 None:intergenic 45.0%
!! AGAATGGGTTGGCCTTTCAT+TGG + chr5_3:12115179-12115198 Msa0799060:CDS 45.0%
CAGCAGATGCAGGATTGAAT+AGG + chr5_3:12115409-12115428 Msa0799060:CDS 45.0%
TCCAAGAGCTCACAACAAGA+CGG - chr5_3:12115623-12115642 None:intergenic 45.0%
! TCTTGTTGTGAGCTCTTGGA+AGG + chr5_3:12115623-12115642 Msa0799060:CDS 45.0%
AGAGGGAAATGAGAATTCGG+AGG + chr5_3:12116191-12116210 Msa0799060:CDS 45.0%
! ATTCTCAGCTTGCTCTTTGC+TGG + chr5_3:12116279-12116298 Msa0799060:CDS 45.0%
AGTATAGCTTGAGGACAACC+AGG - chr5_3:12116351-12116370 None:intergenic 45.0%
CCAGAGCCAAAAAACTAGCA+GGG + chr5_3:12116637-12116656 Msa0799060:intron 45.0%
CAGAGCCAAAAAACTAGCAG+GGG + chr5_3:12116638-12116657 Msa0799060:intron 45.0%
! AGGGGAAACAGAACTGACTT+GGG + chr5_3:12116656-12116675 Msa0799060:intron 45.0%
AGGTTGTGAACGAGACACTT+AGG + chr5_3:12116932-12116951 Msa0799060:intron 45.0%
TTAGGCTGGGTAATGTTGTG+AGG + chr5_3:12116950-12116969 Msa0799060:CDS 45.0%
TGTGAGGTTCCTTCATAGGA+AGG + chr5_3:12116966-12116985 Msa0799060:CDS 45.0%
CTTTAATCCATGGAGATGGC+AGG + chr5_3:12117216-12117235 Msa0799060:CDS 45.0%
AAGCACGCAAACCGATACAT+TGG + chr5_3:12117281-12117300 Msa0799060:intron 45.0%
GTCGACACATCAGTGATTCT+TGG - chr5_3:12117379-12117398 None:intergenic 45.0%
CTTCAAAGGAAAGCCCAAGT+AGG - chr5_3:12117557-12117576 None:intergenic 45.0%
CTACTTGGGCTTTCCTTTGA+AGG + chr5_3:12117555-12117574 Msa0799060:intron 45.0%
GTTCACAACCACACCTTCAA+AGG - chr5_3:12117571-12117590 None:intergenic 45.0%
CAGCGTGTGTACGTTATGTT+TGG - chr5_3:12117732-12117751 None:intergenic 45.0%
!! GAGCTTTAGAGCATGTGCAT+TGG - chr5_3:12117864-12117883 None:intergenic 45.0%
CAACCAATGCTTATGGCTCA+AGG + chr5_3:12117983-12118002 Msa0799060:intron 45.0%
CTTTGGCACATGCATGGAAA+GGG - chr5_3:12118214-12118233 None:intergenic 45.0%
ACTTTGGCACATGCATGGAA+AGG - chr5_3:12118215-12118234 None:intergenic 45.0%
! CGCGTCAGGTATTGTAAAAG+AGG - chr5_3:12118373-12118392 None:intergenic 45.0%
CAACCCAACAAGCTTGTGTA+CGG + chr5_3:12118558-12118577 Msa0799060:intron 45.0%
! TGTCCGTACACAAGCTTGTT+GGG - chr5_3:12118564-12118583 None:intergenic 45.0%
ATGTCCGTACACAAGCTTGT+TGG - chr5_3:12118565-12118584 None:intergenic 45.0%
!! ATATTGGTATTGGTGCCACG+TGG + chr5_3:12119222-12119241 Msa0799060:intron 45.0%
TGACCAAGTTAGGACCATGA+TGG - chr5_3:12119474-12119493 None:intergenic 45.0%
AGAGCACAAAGTGGTTAGTG+CGG - chr5_3:12119600-12119619 None:intergenic 45.0%
CATATGACAACTCGAGGCTA+AGG - chr5_3:12119862-12119881 None:intergenic 45.0%
TTGCCAGATGCACTTGAGTT+TGG - chr5_3:12120263-12120282 None:intergenic 45.0%
AATCTTGGTCCTCCTCCAAA+CGG - chr5_3:12120302-12120321 None:intergenic 45.0%
TCTGATCCTGCGCATAATCT+TGG - chr5_3:12120317-12120336 None:intergenic 45.0%
! GGGCTTGGACTCTAATTTGT+AGG - chr5_3:12120457-12120476 None:intergenic 45.0%
ATACTAGGTAGCATGGCATG+TGG - chr5_3:12120554-12120573 None:intergenic 45.0%
! ATCCGTTTTCTTCTCCCTCT+AGG + chr5_3:12120902-12120921 Msa0799060:three_prime_UTR 45.0%
AGCCTAGAGGGAGAAGAAAA+CGG - chr5_3:12120907-12120926 None:intergenic 45.0%
!! AATAAAAATAATAAGTAATA+GGG + chr5_3:12117489-12117508 Msa0799060:intron 5.0%
!! TATATATATATATATATACT+AGG - chr5_3:12120569-12120588 None:intergenic 5.0%
CCCAAGCTTAATCTTCCACC+AGG + chr5_3:12115155-12115174 Msa0799060:CDS 50.0%
TTCCACCAGGAAGAATGGGT+TGG + chr5_3:12115168-12115187 Msa0799060:CDS 50.0%
AAAGGCCAACCCATTCTTCC+TGG - chr5_3:12115176-12115195 None:intergenic 50.0%
GCCAGAGCCAAAAAACTAGC+AGG + chr5_3:12116636-12116655 Msa0799060:intron 50.0%
!!! CCCTGCTAGTTTTTTGGCTC+TGG - chr5_3:12116640-12116659 None:intergenic 50.0%
CAGGGGAAACAGAACTGACT+TGG + chr5_3:12116655-12116674 Msa0799060:intron 50.0%
TGTGAACGAGACACTTAGGC+TGG + chr5_3:12116936-12116955 Msa0799060:CDS 50.0%
GTGAACGAGACACTTAGGCT+GGG + chr5_3:12116937-12116956 Msa0799060:CDS 50.0%
ATGTGGGTGGAAAGTCCTTC+CGG + chr5_3:12117144-12117163 Msa0799060:CDS 50.0%
AAATGCACGGCTGCAATGAC+CGG - chr5_3:12117166-12117185 None:intergenic 50.0%
AAAGGAAAGCCCAAGTAGGG+AGG - chr5_3:12117553-12117572 None:intergenic 50.0%
! TGGGCTTTCCTTTGAAGGTG+TGG + chr5_3:12117560-12117579 Msa0799060:intron 50.0%
CATAACGTACACACGCTGCA+CGG + chr5_3:12117734-12117753 Msa0799060:intron 50.0%
CATGCATGGAAAGGGATGGA+CGG - chr5_3:12118206-12118225 None:intergenic 50.0%
! GTGGTTAGCAGGCATTGCAT+TGG + chr5_3:12118782-12118801 Msa0799060:intron 50.0%
ATGGCCATTGTGTGAACGTG+TGG + chr5_3:12118914-12118933 Msa0799060:intron 50.0%
TGGCCATTGTGTGAACGTGT+GGG + chr5_3:12118915-12118934 Msa0799060:intron 50.0%
GATATGCACGTGCAAGTGAG+AGG - chr5_3:12118993-12119012 None:intergenic 50.0%
TGCCACGTGGCATGAAATGA+TGG + chr5_3:12119235-12119254 Msa0799060:intron 50.0%
GCCACGTGGCATGAAATGAT+GGG + chr5_3:12119236-12119255 Msa0799060:intron 50.0%
TCCCATCATTTCATGCCACG+TGG - chr5_3:12119240-12119259 None:intergenic 50.0%
!! TGGTATTGGTCCCTGCACTT+TGG - chr5_3:12119195-12119214 None:intergenic 50.0%
!! GATGATTTCTGGTGCTGGAG+TGG - chr5_3:12119818-12119837 None:intergenic 50.0%
GGACCAAACTCAAGTGCATC+TGG + chr5_3:12120257-12120276 Msa0799060:CDS 50.0%
! GCCGTCTTGTTGTGAGCTCT+TGG + chr5_3:12115619-12115638 Msa0799060:CDS 55.0%
GCTCTCCAGTAAGCAGTTCC+AGG - chr5_3:12115903-12115922 None:intergenic 55.0%
GGAAGGACTTTCCACCCACA+TGG - chr5_3:12117145-12117164 None:intergenic 55.0%
GGTCATTGCAGCCGTGCATT+TGG + chr5_3:12117165-12117184 Msa0799060:CDS 55.0%
GGACTAACCTGCCATCTCCA+TGG - chr5_3:12117226-12117245 None:intergenic 55.0%
!! GTGGTGGATCCTCCCTACTT+GGG + chr5_3:12117541-12117560 Msa0799060:intron 55.0%
GGCACATGCATGGAAAGGGA+TGG - chr5_3:12118210-12118229 None:intergenic 55.0%
CTGCCCACACGTTCACACAA+TGG - chr5_3:12118921-12118940 None:intergenic 55.0%
GAGAGGCCCACTTTCCACAT+GGG - chr5_3:12118976-12118995 None:intergenic 55.0%
TGAGAGGCCCACTTTCCACA+TGG - chr5_3:12118977-12118996 None:intergenic 55.0%
!! TCTGGTGCTGGAGTGGACTA+TGG - chr5_3:12119811-12119830 None:intergenic 55.0%
!! GGGTTGGTGGTGCAGAACAA+TGG + chr5_3:12120227-12120246 Msa0799060:intron 55.0%
GGAGGACCAAGATTATGCGC+AGG + chr5_3:12120308-12120327 Msa0799060:CDS 55.0%
GTACAATGTGGGTGGGGTAG+TGG - chr5_3:12120947-12120966 None:intergenic 55.0%
GGCCAACCCATTCTTCCTGG+TGG - chr5_3:12115173-12115192 None:intergenic 60.0%
! GTCGGTGTCTGTGTCGTGTC+TGG - chr5_3:12116442-12116461 None:intergenic 60.0%
!! GGTGGTGGATCCTCCCTACT+TGG + chr5_3:12117540-12117559 Msa0799060:intron 60.0%
TGTGTGAACGTGTGGGCAGC+AGG + chr5_3:12118922-12118941 Msa0799060:intron 60.0%
GCAGCAGGTCCTGAGTTTCC+AGG + chr5_3:12118937-12118956 Msa0799060:intron 60.0%
GCACGGCTGCAATGACCGGA+AGG - chr5_3:12117162-12117181 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 12114864 12121139 12114864 ID=Msa0799060;Name=Msa0799060
chr5_3 mRNA 12114864 12121139 12114864 ID=Msa0799060-mRNA-1;Parent=Msa0799060;Name=Msa0799060-mRNA-1;_AED=0.08;_eAED=0.08;_QI=198|0.85|1|1|0.85|0.75|8|591|458
chr5_3 exon 12114864 12115273 12114864 ID=Msa0799060-mRNA-1:exon:4972;Parent=Msa0799060-mRNA-1
chr5_3 exon 12115359 12115683 12115359 ID=Msa0799060-mRNA-1:exon:4973;Parent=Msa0799060-mRNA-1
chr5_3 exon 12115777 12115929 12115777 ID=Msa0799060-mRNA-1:exon:4974;Parent=Msa0799060-mRNA-1
chr5_3 exon 12116129 12116380 12116129 ID=Msa0799060-mRNA-1:exon:4975;Parent=Msa0799060-mRNA-1
chr5_3 exon 12116934 12117012 12116934 ID=Msa0799060-mRNA-1:exon:4976;Parent=Msa0799060-mRNA-1
chr5_3 exon 12117131 12117237 12117131 ID=Msa0799060-mRNA-1:exon:4977;Parent=Msa0799060-mRNA-1
chr5_3 exon 12120242 12120575 12120242 ID=Msa0799060-mRNA-1:exon:4978;Parent=Msa0799060-mRNA-1
chr5_3 exon 12120634 12121139 12120634 ID=Msa0799060-mRNA-1:exon:4979;Parent=Msa0799060-mRNA-1
chr5_3 five_prime_UTR 12114864 12115061 12114864 ID=Msa0799060-mRNA-1:five_prime_utr;Parent=Msa0799060-mRNA-1
chr5_3 CDS 12115062 12115273 12115062 ID=Msa0799060-mRNA-1:cds;Parent=Msa0799060-mRNA-1
chr5_3 CDS 12115359 12115683 12115359 ID=Msa0799060-mRNA-1:cds;Parent=Msa0799060-mRNA-1
chr5_3 CDS 12115777 12115929 12115777 ID=Msa0799060-mRNA-1:cds;Parent=Msa0799060-mRNA-1
chr5_3 CDS 12116129 12116380 12116129 ID=Msa0799060-mRNA-1:cds;Parent=Msa0799060-mRNA-1
chr5_3 CDS 12116934 12117012 12116934 ID=Msa0799060-mRNA-1:cds;Parent=Msa0799060-mRNA-1
chr5_3 CDS 12117131 12117237 12117131 ID=Msa0799060-mRNA-1:cds;Parent=Msa0799060-mRNA-1
chr5_3 CDS 12120242 12120490 12120242 ID=Msa0799060-mRNA-1:cds;Parent=Msa0799060-mRNA-1
chr5_3 three_prime_UTR 12120491 12120575 12120491 ID=Msa0799060-mRNA-1:three_prime_utr;Parent=Msa0799060-mRNA-1
chr5_3 three_prime_UTR 12120634 12121139 12120634 ID=Msa0799060-mRNA-1:three_prime_utr;Parent=Msa0799060-mRNA-1
Gene Sequence

>Msa0799060

ATGTCTGACTCAGATGTAACTTTCTATTTTCTTTCTTCAATTCTTTCTCTTCTCATCTTCATTTTCTTTCTCATCAAAACAAAACATGCCAAACCCAAGCTTAATCTTCCACCAGGAAGAATGGGTTGGCCTTTCATTGGAGAAACTATTGGTTACTTGAAGCCTTATTCTGCTACAACTATAGGAAAATTCATGGAACAACACATAGCAAGGTATGGTAAAATTTACAAATCAAATTTGTTTGGTGGACCAACAATAGTTTCAGCAGATGCAGGATTGAATAGGTTCATATTACAAAATGAAGGGAAATTATTTGAGTGTAGTTATCCAAGTAGCATTGGTGGAATACTTGGGAAATGGTCTATGTTGGTTTTGGTTGGTGACATGCATAGAGACATGCGTAATATATCCCTCAATTTTTTGTGTCATGCTAGACTTAGAACACATTTATTGAAAGAGGTTGAGAAACATAGCCGTCTTGTTGTGAGCTCTTGGAAGGAAAAAACCACATTTGCAGCTCAAGATGAAGCTAAAAAGTTCACATTTAATTTGATGGCAGAACACATTATGAGTCTTCAACCTGGGAAAATAGAGACAGAGAACTTAAAGAAAGAGTATGTTACTTTTATGAAAGGTGTTGTATCAGCACCATTGAATTTTCCTGGAACTGCTTACTGGAGAGCATTAAAGTCAAGATGCACAATACTGAAGTTCATAGAGGGTAAAATGGAAGAAAGAATCAAAAGAATGCAAGAGGGAAATGAGAATTCGGAGGAAAATGATCTTTTGAACTGGGTTTTAAAACATTCAAATCTTTCAACAGAGCAAATTCTTGACTTGATTCTCAGCTTGCTCTTTGCTGGTCATGAAACTTCATCTGTTTCCATAGCTCTAGCTATTTACTTTCTTCCTGGTTGTCCTCAAGCTATACTACAATTGAGGGTTGTGAACGAGACACTTAGGCTGGGTAATGTTGTGAGGTTCCTTCATAGGAAGGCTCTTAAAGATGTTCGGTACAAAGGTTATGATATTCCATGTGGGTGGAAAGTCCTTCCGGTCATTGCAGCCGTGCATTTGGATCCTTTACTTTTTGACCAACCTCAACACTTTAATCCATGGAGATGGCAGAACAATGGTAATAATGGACCAAACTCAAGTGCATCTGGCAATAGTAATATTTTCTTACCGTTTGGAGGAGGACCAAGATTATGCGCAGGATCAGAATTAGCAAAGCTTGAAATGGCTGTTTTCATTCATCATCTCATTCTCAACTACAATTGGGAATTAACTGATAATAACGATCAAGCTTTTGCATATCCTTTTGTTGATTTTCCTAAAGGCCTACAAATTAGAGTCCAAGCCCACTCTATAATATGA
Protein sequence

>Msa0799060

MSDSDVTFYFLSSILSLLIFIFFLIKTKHAKPKLNLPPGRMGWPFIGETIGYLKPYSATTIGKFMEQHIARYGKIYKSNLFGGPTIVSADAGLNRFILQNEGKLFECSYPSSIGGILGKWSMLVLVGDMHRDMRNISLNFLCHARLRTHLLKEVEKHSRLVVSSWKEKTTFAAQDEAKKFTFNLMAEHIMSLQPGKIETENLKKEYVTFMKGVVSAPLNFPGTAYWRALKSRCTILKFIEGKMEERIKRMQEGNENSEENDLLNWVLKHSNLSTEQILDLILSLLFAGHETSSVSIALAIYFLPGCPQAILQLRVVNETLRLGNVVRFLHRKALKDVRYKGYDIPCGWKVLPVIAAVHLDPLLFDQPQHFNPWRWQNNGNNGPNSSASGNSNIFLPFGGGPRLCAGSELAKLEMAVFIHHLILNYNWELTDNNDQAFAYPFVDFPKGLQIRVQAHSII*