Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717180 | XP_003612115.1 | 94.781 | 709 | 35 | 1 | 1 | 709 | 1 | 707 | 0.0 | 1351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717180 | sp|Q9SD34|C3H44_ARATH | 53.304 | 227 | 90 | 5 | 16 | 229 | 46 | 269 | 8.20e-68 | 246 |
| Msa0717180 | sp|Q9SD34|C3H44_ARATH | 47.436 | 78 | 38 | 1 | 324 | 398 | 703 | 780 | 3.46e-13 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717180 | G7KGD1 | 94.781 | 709 | 35 | 1 | 1 | 709 | 1 | 707 | 0.0 | 1351 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0717180 | Msa0758250 | 0.818854 | 1.577597e-52 | -8.615850e-47 |
| Msa0717180 | Msa0799620 | 0.860026 | 2.750499e-63 | -8.615850e-47 |
| Msa0717180 | Msa0865970 | 0.806870 | 6.668094e-50 | -8.615850e-47 |
| Msa0717180 | Msa0866070 | 0.801394 | 9.194007e-49 | -8.615850e-47 |
| Msa0179100 | Msa0717180 | 0.814316 | 1.639536e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717180 | MtrunA17_Chr5g0405031 | 94.781 | 709 | 35 | 1 | 1 | 709 | 1 | 707 | 0.0 | 1351 |
| Msa0717180 | MtrunA17_Chr5g0405071 | 63.525 | 244 | 79 | 5 | 22 | 262 | 51 | 287 | 5.72e-96 | 309 |
| Msa0717180 | MtrunA17_Chr5g0405061 | 40.936 | 513 | 201 | 11 | 242 | 696 | 15 | 483 | 8.20e-86 | 283 |
| Msa0717180 | MtrunA17_Chr3g0145201 | 55.941 | 202 | 76 | 3 | 46 | 246 | 214 | 403 | 6.12e-68 | 241 |
| Msa0717180 | MtrunA17_Chr3g0109671 | 38.462 | 130 | 77 | 2 | 65 | 192 | 9 | 137 | 1.06e-24 | 100 |
| Msa0717180 | MtrunA17_Chr7g0274551 | 48.515 | 101 | 51 | 1 | 70 | 170 | 25 | 124 | 1.66e-24 | 100 |
| Msa0717180 | MtrunA17_Chr3g0145231 | 60.000 | 60 | 23 | 1 | 116 | 175 | 4 | 62 | 7.39e-23 | 93.2 |
| Msa0717180 | MtrunA17_Chr3g0109641 | 36.184 | 152 | 90 | 3 | 71 | 218 | 15 | 163 | 8.62e-23 | 103 |
| Msa0717180 | MtrunA17_Chr3g0109631 | 35.526 | 152 | 91 | 3 | 71 | 218 | 15 | 163 | 1.19e-22 | 102 |
| Msa0717180 | MtrunA17_Chr3g0109611 | 36.842 | 152 | 89 | 3 | 71 | 218 | 15 | 163 | 1.72e-22 | 102 |
| Msa0717180 | MtrunA17_Chr3g0109591 | 34.839 | 155 | 94 | 3 | 65 | 215 | 9 | 160 | 2.75e-22 | 100 |
| Msa0717180 | MtrunA17_Chr3g0145221 | 58.904 | 73 | 19 | 1 | 46 | 118 | 214 | 275 | 3.01e-20 | 92.4 |
| Msa0717180 | MtrunA17_Chr3g0145251 | 59.649 | 57 | 23 | 0 | 336 | 392 | 160 | 216 | 2.60e-15 | 79.7 |
| Msa0717180 | MtrunA17_Chr3g0145241 | 47.887 | 71 | 37 | 0 | 176 | 246 | 1 | 71 | 6.41e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717180 | AT2G18090.2 | 60.000 | 175 | 67 | 2 | 62 | 234 | 70 | 243 | 7.03e-72 | 249 |
| Msa0717180 | AT2G18090.2 | 40.777 | 103 | 47 | 3 | 336 | 433 | 458 | 551 | 1.39e-11 | 68.6 |
| Msa0717180 | AT2G18090.1 | 60.000 | 175 | 67 | 2 | 62 | 234 | 70 | 243 | 1.21e-71 | 249 |
| Msa0717180 | AT2G18090.1 | 55.769 | 52 | 23 | 0 | 336 | 387 | 458 | 509 | 2.49e-11 | 67.8 |
| Msa0717180 | AT3G51120.1 | 53.304 | 227 | 90 | 5 | 16 | 229 | 46 | 269 | 1.01e-68 | 246 |
| Msa0717180 | AT3G51120.1 | 47.436 | 78 | 38 | 1 | 324 | 398 | 716 | 793 | 3.41e-14 | 77.4 |
| Msa0717180 | AT2G16485.2 | 54.190 | 179 | 79 | 3 | 70 | 247 | 598 | 774 | 5.30e-58 | 214 |
| Msa0717180 | AT2G16485.2 | 50.909 | 55 | 27 | 0 | 334 | 388 | 1292 | 1346 | 1.63e-11 | 68.6 |
| Msa0717180 | AT2G16485.1 | 54.190 | 179 | 79 | 3 | 70 | 247 | 598 | 774 | 6.12e-58 | 214 |
| Msa0717180 | AT2G16485.1 | 50.909 | 55 | 27 | 0 | 334 | 388 | 1307 | 1361 | 1.74e-11 | 68.6 |
| Msa0717180 | AT5G63700.1 | 36.478 | 159 | 92 | 4 | 74 | 226 | 25 | 180 | 2.66e-26 | 114 |
| Msa0717180 | AT5G63700.2 | 36.478 | 159 | 92 | 4 | 74 | 226 | 25 | 180 | 3.98e-26 | 113 |
Find 209 sgRNAs with CRISPR-Local
Find 365 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGAAGTGAATGGAAATT+TGG | 0.118164 | 5_1:-10857888 | Msa0717180:CDS |
| CATAATCAGCAAACTATATC+TGG | 0.196965 | 5_1:-10857482 | Msa0717180:CDS |
| GAGAGAGAAACCCTAGAAAT+TGG | 0.197010 | 5_1:+10860972 | None:intergenic |
| TGAGCGGCAATGATACATTT+TGG | 0.197931 | 5_1:+10858320 | None:intergenic |
| CCACCGCGTCCCCAATTTCT+AGG | 0.225575 | 5_1:-10860983 | Msa0717180:five_prime_UTR |
| TGATTCAGTTTCAAATCTTT+TGG | 0.228594 | 5_1:-10857726 | Msa0717180:CDS |
| CCCTTAGCCTTCTTGTTTAT+AGG | 0.232558 | 5_1:+10858733 | None:intergenic |
| TGACAAGAAATTTCACATTT+AGG | 0.235639 | 5_1:+10858016 | None:intergenic |
| GCTATTTATCTTTAGTCTTT+AGG | 0.235773 | 5_1:-10856783 | Msa0717180:three_prime_UTR |
| TCCTTCAAATTCACCTTTCA+TGG | 0.246825 | 5_1:-10860914 | Msa0717180:exon |
| CTCCTTTCCCAGGTATTTGC+TGG | 0.263713 | 5_1:-10857278 | Msa0717180:CDS |
| CCTCGCTCTGCTTGACAATC+TGG | 0.265321 | 5_1:+10858194 | None:intergenic |
| CAGATTCATCTGTACCATTA+GGG | 0.289928 | 5_1:+10858143 | None:intergenic |
| TCTCCTCCGGTGACCGGAAT+TGG | 0.295334 | 5_1:+10860847 | None:intergenic |
| CAACTGTGAACAACAGTCTT+TGG | 0.297579 | 5_1:-10858299 | Msa0717180:CDS |
| CATCCCTTGCACAAGGAATA+TGG | 0.304040 | 5_1:+10859213 | None:intergenic |
| CTTTAAGATGATGACGCTTC+CGG | 0.306685 | 5_1:+10858806 | None:intergenic |
| TTGGAAGTGAATGGAAATTT+GGG | 0.307833 | 5_1:-10857887 | Msa0717180:CDS |
| GTATGCTTCATTTGCTTTGA+TGG | 0.312007 | 5_1:-10860679 | Msa0717180:CDS |
| GGAATTGGAGGTGGAATTAC+AGG | 0.313689 | 5_1:+10860862 | None:intergenic |
| ACAGATTCATCTGTACCATT+AGG | 0.319043 | 5_1:+10858142 | None:intergenic |
| GAACAGTGCCCAAGGAATTA+AGG | 0.342151 | 5_1:-10859106 | Msa0717180:intron |
| GAGAATCCGGGGCAATCTTC+TGG | 0.344732 | 5_1:-10857797 | Msa0717180:CDS |
| CACAGCAACGACATACTAAA+AGG | 0.351524 | 5_1:+10858451 | None:intergenic |
| TCTCTCCAGATCTCAGAATA+TGG | 0.356724 | 5_1:-10858405 | Msa0717180:CDS |
| AGACCATTACCTTAATTCCT+TGG | 0.360246 | 5_1:+10859097 | None:intergenic |
| ATCAATGATGGCACTGATGC+AGG | 0.365231 | 5_1:-10858589 | Msa0717180:CDS |
| TTTAAGATGATGACGCTTCC+GGG | 0.365840 | 5_1:+10858807 | None:intergenic |
| AAAAGAATGTTGTTATAAAC+AGG | 0.366748 | 5_1:+10856719 | None:intergenic |
| TGGATGATGGCAGCACTCTT+TGG | 0.372356 | 5_1:-10857767 | Msa0717180:CDS |
| CCCATGGAAATTGATGAGTT+TGG | 0.376010 | 5_1:+10857253 | None:intergenic |
| AACTGTGAACAACAGTCTTT+GGG | 0.383075 | 5_1:-10858298 | Msa0717180:CDS |
| TGTAATTCCACCTCCAATTC+CGG | 0.384890 | 5_1:-10860860 | Msa0717180:CDS |
| TCATCGTTGCTTCACTCTAC+AGG | 0.389729 | 5_1:-10858526 | Msa0717180:CDS |
| ACAGCCAGTCTGGCATTATC+AGG | 0.391683 | 5_1:-10858497 | Msa0717180:CDS |
| CCTTTACCTGCATCAAAATC+TGG | 0.396203 | 5_1:+10857590 | None:intergenic |
| GGCAATCTTCTGGTCAGAAC+TGG | 0.396564 | 5_1:-10857787 | Msa0717180:CDS |
| AGAGAGAAACCCTAGAAATT+GGG | 0.403990 | 5_1:+10860973 | None:intergenic |
| TCCTTCGGCTTCTTCACAAC+CGG | 0.406121 | 5_1:+10860712 | None:intergenic |
| GACCATTACCTTAATTCCTT+GGG | 0.410068 | 5_1:+10859098 | None:intergenic |
| AGAAGGCTAAGGGAAATGTT+TGG | 0.415137 | 5_1:-10858723 | Msa0717180:CDS |
| CATACATCTTCTTCATCCTT+CGG | 0.416063 | 5_1:+10860697 | None:intergenic |
| ATCCGACATTGAAGAGAATC+CGG | 0.417257 | 5_1:-10857810 | Msa0717180:CDS |
| CACATTTAGCTCACAGGTAG+TGG | 0.423134 | 5_1:+10858657 | None:intergenic |
| ACCCTCCATATTCTGAGATC+TGG | 0.425115 | 5_1:+10858400 | None:intergenic |
| CAGGGATGGAACAGCCAGTC+TGG | 0.425617 | 5_1:-10858507 | Msa0717180:CDS |
| GATCCAACTGGGAAGGTTCA+TGG | 0.426904 | 5_1:-10858475 | Msa0717180:CDS |
| GAAGGCTAAGGGAAATGTTT+GGG | 0.432087 | 5_1:-10858722 | Msa0717180:CDS |
| TGGCATTATCAGGATCCAAC+TGG | 0.436208 | 5_1:-10858487 | Msa0717180:CDS |
| GGTCACCGGAGGAGAATTTA+CGG | 0.438703 | 5_1:-10860839 | Msa0717180:CDS |
| GTTTGGTTCCAGCAAATACC+TGG | 0.442053 | 5_1:+10857270 | None:intergenic |
| TATGTGCAGGCTCCTTTCCC+AGG | 0.444452 | 5_1:-10857288 | Msa0717180:intron |
| ATTTCCATTTCTCAGCTAAA+CGG | 0.448596 | 5_1:+10860458 | None:intergenic |
| GGTTCCAATGGGTCTTCTGA+GGG | 0.448819 | 5_1:-10857866 | Msa0717180:CDS |
| AGAATCAACGCTGCTGATGC+TGG | 0.453959 | 5_1:-10860793 | Msa0717180:CDS |
| GGAATTACAGGTTGCTGAAT+CGG | 0.454794 | 5_1:+10860874 | None:intergenic |
| CTTAAAGTTGACACTGGTTG+TGG | 0.455952 | 5_1:-10858790 | Msa0717180:CDS |
| CTTCATTGTCGAGGAAGTAA+TGG | 0.458491 | 5_1:-10856673 | Msa0717180:three_prime_UTR |
| ATCTACTATACAGGAATTCT+CGG | 0.459300 | 5_1:+10858765 | None:intergenic |
| CACTTGTTCTATGTGATCAT+CGG | 0.460519 | 5_1:-10860651 | Msa0717180:intron |
| ACTATTTGAATCTACTATAC+AGG | 0.461919 | 5_1:+10858756 | None:intergenic |
| CCCCGGATTCTCTTCAATGT+CGG | 0.462369 | 5_1:+10857808 | None:intergenic |
| GGGTTCCAATGGGTCTTCTG+AGG | 0.463383 | 5_1:-10857867 | Msa0717180:CDS |
| GGTAGTGCAAGGTGCACGTC+GGG | 0.464070 | 5_1:+10857986 | None:intergenic |
| CAAGCAGAGCGAGGAAGATA+AGG | 0.465546 | 5_1:-10858185 | Msa0717180:CDS |
| TCTGAGGGTCCGAGTAATAG+TGG | 0.465669 | 5_1:-10857851 | Msa0717180:CDS |
| CATTACTTCCTCGACAATGA+AGG | 0.466624 | 5_1:+10856674 | None:intergenic |
| GTTTCAAGACTAGGAGAGTC+TGG | 0.467881 | 5_1:-10858565 | Msa0717180:CDS |
| CTGATCATCGGAGTATGTTC+AGG | 0.468435 | 5_1:+10860814 | None:intergenic |
| AAATGTTTGGGACAGTGTCT+TGG | 0.472814 | 5_1:-10858710 | Msa0717180:CDS |
| GTAAATTCTCCTCCGGTGAC+CGG | 0.474128 | 5_1:+10860841 | None:intergenic |
| GGTGATGCTCTGAGCTCCTC+AGG | 0.475026 | 5_1:-10857569 | Msa0717180:CDS |
| GGAAAATAAAGAAAATAGTC+AGG | 0.478338 | 5_1:-10858260 | Msa0717180:CDS |
| CGAAATGAATACTAATGAAT+CGG | 0.480617 | 5_1:-10858614 | Msa0717180:CDS |
| CGCTGCTGATGCTGGCGTGT+CGG | 0.481436 | 5_1:-10860785 | Msa0717180:CDS |
| CCTCCGGTGACCGGAATTGG+AGG | 0.484238 | 5_1:+10860850 | None:intergenic |
| TTCTCATCAAAGGCAGTTGA+AGG | 0.484294 | 5_1:+10857965 | None:intergenic |
| GTCATTCAAATTCTCATCAA+AGG | 0.485039 | 5_1:+10857955 | None:intergenic |
| CGGAACCTTCCGCCGAAGAG+TGG | 0.485800 | 5_1:-10857670 | Msa0717180:CDS |
| TGCACATCTGCTTGATGAAA+CGG | 0.487421 | 5_1:+10857503 | None:intergenic |
| GACAGTGTCTTGGACGGTGT+TGG | 0.488955 | 5_1:-10858700 | Msa0717180:CDS |
| CACCGCGTCCCCAATTTCTA+GGG | 0.489872 | 5_1:-10860982 | Msa0717180:five_prime_UTR |
| TCCGACATTGAAGAGAATCC+GGG | 0.491196 | 5_1:-10857809 | Msa0717180:CDS |
| CACATCAATATCCCACTCTT+CGG | 0.493275 | 5_1:+10857658 | None:intergenic |
| ATAATCAGCAAACTATATCT+GGG | 0.493948 | 5_1:-10857481 | Msa0717180:CDS |
| GCTATAACTGATTGTTTACA+AGG | 0.495168 | 5_1:-10857623 | Msa0717180:CDS |
| TCCTATAAACAAGAAGGCTA+AGG | 0.495961 | 5_1:-10858734 | Msa0717180:CDS |
| ACCAAACTCATCAATTTCCA+TGG | 0.504868 | 5_1:-10857254 | Msa0717180:CDS |
| AATGGAAATTTGGGTTCCAA+TGG | 0.512272 | 5_1:-10857878 | Msa0717180:CDS |
| TGAACATGAACAGTACCTTT+CGG | 0.514543 | 5_1:+10860739 | None:intergenic |
| TTGTCCTAAGGCGTATCATC+CGG | 0.517465 | 5_1:-10860509 | Msa0717180:CDS |
| CGGTTGCTCATTTGCTACAG+TGG | 0.521421 | 5_1:+10857523 | None:intergenic |
| CCGGTGACCGGAATTGGAGG+TGG | 0.522586 | 5_1:+10860853 | None:intergenic |
| CATCGTTGCTTCACTCTACA+GGG | 0.522838 | 5_1:-10858525 | Msa0717180:CDS |
| ATGGAAATTTGGGTTCCAAT+GGG | 0.523751 | 5_1:-10857877 | Msa0717180:CDS |
| TTTGGATGCAGTAGCGGCGG+AGG | 0.526604 | 5_1:-10857708 | Msa0717180:CDS |
| AATGAATCGGCAATCAATGA+TGG | 0.530611 | 5_1:-10858601 | Msa0717180:CDS |
| ATTATATAGCAAAATAGAGT+AGG | 0.532114 | 5_1:+10856630 | None:intergenic |
| TCAATGATGGCACTGATGCA+GGG | 0.532158 | 5_1:-10858588 | Msa0717180:CDS |
| CCTTCCACCACTTCATCAGA+AGG | 0.532926 | 5_1:+10857929 | None:intergenic |
| CCTATAAACAAGAAGGCTAA+GGG | 0.533302 | 5_1:-10858733 | Msa0717180:CDS |
| TTCTGACCAGAAGATTGCCC+CGG | 0.533652 | 5_1:+10857791 | None:intergenic |
| AACTTACGAGGTGGACCCCA+TGG | 0.535838 | 5_1:+10857237 | None:intergenic |
| GTGTACTGGTTGTACTTGAA+AGG | 0.537125 | 5_1:-10858916 | Msa0717180:CDS |
| TACTGTTCATGTTCATACTC+CGG | 0.539740 | 5_1:-10860731 | Msa0717180:CDS |
| TGCTGTTCGTGCGAGTTGCA+AGG | 0.542742 | 5_1:-10858839 | Msa0717180:CDS |
| TCCATGAAAGGTGAATTTGA+AGG | 0.542867 | 5_1:+10860913 | None:intergenic |
| CCACCTCCAATTCCGGTCAC+CGG | 0.545856 | 5_1:-10860853 | Msa0717180:CDS |
| AGTGTCTTGGACGGTGTTGG+AGG | 0.546056 | 5_1:-10858697 | Msa0717180:CDS |
| TTTGGGAGCCAATGTTACAT+TGG | 0.547021 | 5_1:-10858281 | Msa0717180:CDS |
| TTCTGGTCAGAACTGGATGA+TGG | 0.548380 | 5_1:-10857780 | Msa0717180:CDS |
| GCAGAGCGAGGAAGATAAGG+TGG | 0.553195 | 5_1:-10858182 | Msa0717180:CDS |
| TCACTTTGCCCACTATTACT+CGG | 0.553393 | 5_1:+10857842 | None:intergenic |
| AAATGTGAAATTTCTTGTCA+TGG | 0.555258 | 5_1:-10858013 | Msa0717180:CDS |
| GTTAACTTGGCAGATTACAT+TGG | 0.556462 | 5_1:-10856808 | Msa0717180:exon |
| GCAGATGGGAATATCAGTGA+TGG | 0.557781 | 5_1:-10858073 | Msa0717180:CDS |
| ATATCCCACTCTTCGGCGGA+AGG | 0.557902 | 5_1:+10857665 | None:intergenic |
| ATTAAGTATCCGATTCAAGT+TGG | 0.557909 | 5_1:+10856744 | None:intergenic |
| GCACGAACAGCACCTTTCCA+AGG | 0.558666 | 5_1:+10858850 | None:intergenic |
| AGGACCCGTAAATTCTCCTC+CGG | 0.559723 | 5_1:+10860834 | None:intergenic |
| GATGAAGTGGTGGAAGGTCA+TGG | 0.560027 | 5_1:-10857923 | Msa0717180:CDS |
| CCAAACTCATCAATTTCCAT+GGG | 0.564845 | 5_1:-10857253 | Msa0717180:CDS |
| TTGCAGAAATTTATAATCAG+CGG | 0.565688 | 5_1:-10856569 | Msa0717180:three_prime_UTR |
| TGTATTCACATTTAGCTCAC+AGG | 0.568532 | 5_1:+10858651 | None:intergenic |
| GGATCCTGATAATGCCAGAC+TGG | 0.570283 | 5_1:+10858493 | None:intergenic |
| TGCTTCATTTGCTTTGATGG+TGG | 0.571881 | 5_1:-10860676 | Msa0717180:CDS |
| AAATAGTCCTATAAACAAGA+AGG | 0.573367 | 5_1:-10858740 | Msa0717180:CDS |
| GATATTGATGTGTTCACTGA+TGG | 0.573671 | 5_1:-10857647 | Msa0717180:CDS |
| TGGCATCTATGTAGCGATTG+TGG | 0.573894 | 5_1:-10859267 | Msa0717180:CDS |
| AATAAAGAAAATAGTCAGGA+TGG | 0.574172 | 5_1:-10858256 | Msa0717180:CDS |
| GTCACCGGAGGAGAATTTAC+GGG | 0.579781 | 5_1:-10860838 | Msa0717180:CDS |
| CTTGCACAAGGAATATGGAC+AGG | 0.580161 | 5_1:+10859218 | None:intergenic |
| GATGAATCTGTTAAGAGCAA+CGG | 0.581049 | 5_1:-10858130 | Msa0717180:CDS |
| CTCACCTTCCTTCATTGTCG+AGG | 0.583723 | 5_1:-10856682 | Msa0717180:three_prime_UTR |
| GTTTGTGCGGAGCATGCTTG+AGG | 0.586691 | 5_1:-10859146 | Msa0717180:CDS |
| GGACCATGAACCTTCCCAGT+TGG | 0.586869 | 5_1:+10858472 | None:intergenic |
| CCTAGAAATTGGGGACGCGG+TGG | 0.587454 | 5_1:+10860983 | None:intergenic |
| CTAGAAATTGGGGACGCGGT+GGG | 0.588421 | 5_1:+10860984 | None:intergenic |
| GGAACCTTCCGCCGAAGAGT+GGG | 0.589294 | 5_1:-10857669 | Msa0717180:CDS |
| TGTCCATATTCCTTGTGCAA+GGG | 0.590101 | 5_1:-10859216 | Msa0717180:CDS |
| GGCATTATCAGGATCCAACT+GGG | 0.591161 | 5_1:-10858486 | Msa0717180:CDS |
| AGTGTGACTACACAAGCAGA+TGG | 0.591958 | 5_1:-10858088 | Msa0717180:CDS |
| AACCCTAGAAATTGGGGACG+CGG | 0.592171 | 5_1:+10860980 | None:intergenic |
| GTTAGTGTCAGAGGAAACAA+AGG | 0.592996 | 5_1:-10859168 | Msa0717180:CDS |
| GATTCATCTGTACCATTAGG+GGG | 0.594328 | 5_1:+10858145 | None:intergenic |
| CCTTCTGATGAAGTGGTGGA+AGG | 0.595557 | 5_1:-10857929 | Msa0717180:CDS |
| CATCATCTTAAAGTTGACAC+TGG | 0.595832 | 5_1:-10858796 | Msa0717180:CDS |
| CTGATCGAGAACAGTGCCCA+AGG | 0.596069 | 5_1:-10859114 | Msa0717180:CDS |
| CACGCCGGATGATACGCCTT+AGG | 0.596118 | 5_1:+10860505 | None:intergenic |
| CTCCAGATCTCAGAATATGG+AGG | 0.596407 | 5_1:-10858402 | Msa0717180:CDS |
| CGGACCCTCAGAAGACCCAT+TGG | 0.597449 | 5_1:+10857862 | None:intergenic |
| CAATGATGGCACTGATGCAG+GGG | 0.597789 | 5_1:-10858587 | Msa0717180:CDS |
| CTGTCCATATTCCTTGTGCA+AGG | 0.598848 | 5_1:-10859217 | Msa0717180:CDS |
| ATTTGCTACAGTGGATTGAG+AGG | 0.601818 | 5_1:+10857532 | None:intergenic |
| TCTGCTTGTGTAGTCACACT+AGG | 0.601867 | 5_1:+10858091 | None:intergenic |
| GATGCAGGGGTTTCAAGACT+AGG | 0.604571 | 5_1:-10858574 | Msa0717180:CDS |
| GTTGCTTCACTCTACAGGGA+TGG | 0.604743 | 5_1:-10858521 | Msa0717180:CDS |
| TTTGCTACAGTGGATTGAGA+GGG | 0.605774 | 5_1:+10857533 | None:intergenic |
| GCAGCGTTGATTCTGATCAT+CGG | 0.607804 | 5_1:+10860802 | None:intergenic |
| GAGAGAAACCCTAGAAATTG+GGG | 0.607875 | 5_1:+10860974 | None:intergenic |
| TCCAGATCTCAGAATATGGA+GGG | 0.608096 | 5_1:-10858401 | Msa0717180:CDS |
| CAGATGGGAATATCAGTGAT+GGG | 0.610058 | 5_1:-10858072 | Msa0717180:CDS |
| GTTGCAAGGTTCAAACTCCC+CGG | 0.610227 | 5_1:-10858825 | Msa0717180:CDS |
| ATCAATATCCCACTCTTCGG+CGG | 0.610806 | 5_1:+10857661 | None:intergenic |
| CTGAGGGTCCGAGTAATAGT+GGG | 0.616707 | 5_1:-10857850 | Msa0717180:CDS |
| TTCCAGCAAATACCTGGGAA+AGG | 0.617718 | 5_1:+10857276 | None:intergenic |
| AAACGCGGTCGTCCGCCGAA+AGG | 0.620370 | 5_1:-10860754 | Msa0717180:CDS |
| ATGAAGTGGTGGAAGGTCAT+GGG | 0.621645 | 5_1:-10857922 | Msa0717180:CDS |
| GACTGTTGTTCACAGTTGAG+CGG | 0.623812 | 5_1:+10858304 | None:intergenic |
| ATTACAGGTTGCTGAATCGG+TGG | 0.627324 | 5_1:+10860877 | None:intergenic |
| GTGTGACTACACAAGCAGAT+GGG | 0.629009 | 5_1:-10858087 | Msa0717180:CDS |
| TTGAAACTGAATCATCAACT+AGG | 0.629198 | 5_1:+10857735 | None:intergenic |
| CAGAGCGAGGAAGATAAGGT+GGG | 0.629870 | 5_1:-10858181 | Msa0717180:CDS |
| TTCATCTGTACCATTAGGGG+GGG | 0.630127 | 5_1:+10858147 | None:intergenic |
| TTAAGATGATGACGCTTCCG+GGG | 0.630843 | 5_1:+10858808 | None:intergenic |
| TTACAGGTTGCTGAATCGGT+GGG | 0.635375 | 5_1:+10860878 | None:intergenic |
| TTATCAGGATCCAACTGGGA+AGG | 0.637004 | 5_1:-10858482 | Msa0717180:CDS |
| GAATCTGTTAAGAGCAACGG+AGG | 0.639328 | 5_1:-10858127 | Msa0717180:CDS |
| GGAGGAGAAACACAGCGTCA+CGG | 0.640508 | 5_1:-10857690 | Msa0717180:CDS |
| AATATCAGTGATGGGCAAAG+TGG | 0.641070 | 5_1:-10858064 | Msa0717180:CDS |
| CCAGATTGTCAAGCAGAGCG+AGG | 0.642283 | 5_1:-10858194 | Msa0717180:CDS |
| GACAGGTATAGCACATGTAG+TGG | 0.644673 | 5_1:+10859235 | None:intergenic |
| TTTGGTTCCAGCAAATACCT+GGG | 0.645945 | 5_1:+10857271 | None:intergenic |
| TGACAAACCTTCTGATGAAG+TGG | 0.646213 | 5_1:-10857936 | Msa0717180:CDS |
| AGATTCATCTGTACCATTAG+GGG | 0.648209 | 5_1:+10858144 | None:intergenic |
| CCTCCAATTCCGGTCACCGG+AGG | 0.649112 | 5_1:-10860850 | Msa0717180:CDS |
| TCGTTGCTGTGCAAGTTGAA+AGG | 0.650161 | 5_1:-10858439 | Msa0717180:CDS |
| ATTCATCTGTACCATTAGGG+GGG | 0.651828 | 5_1:+10858146 | None:intergenic |
| AGGCAGTTGAAGGTAGTGCA+AGG | 0.655786 | 5_1:+10857975 | None:intergenic |
| CGACAATGAAGGAAGGTGAG+AGG | 0.657376 | 5_1:+10856685 | None:intergenic |
| CAAACCTTCTGATGAAGTGG+TGG | 0.658297 | 5_1:-10857933 | Msa0717180:CDS |
| AGAGGAAACAAAGGTTTGTG+CGG | 0.658304 | 5_1:-10859159 | Msa0717180:CDS |
| ACTTCCTCGACAATGAAGGA+AGG | 0.664200 | 5_1:+10856678 | None:intergenic |
| TAATCAGCAAACTATATCTG+GGG | 0.665489 | 5_1:-10857480 | Msa0717180:CDS |
| TGTGTAGTCACACTAGGAGA+CGG | 0.667876 | 5_1:+10858097 | None:intergenic |
| GTTTGGGACAGTGTCTTGGA+CGG | 0.669837 | 5_1:-10858706 | Msa0717180:CDS |
| TTAGCTGAGAAATGGAAATG+TGG | 0.673734 | 5_1:-10860454 | Msa0717180:intron |
| TCCGGTTGTGAAGAAGCCGA+AGG | 0.679103 | 5_1:-10860713 | Msa0717180:CDS |
| ATGGTCTTAGCAATGCAACA+AGG | 0.681952 | 5_1:-10858237 | Msa0717180:CDS |
| TCATCTCGTTTAACACACGC+CGG | 0.683606 | 5_1:+10860490 | None:intergenic |
| TGTGAAATTTCTTGTCATGG+TGG | 0.684535 | 5_1:-10858010 | Msa0717180:CDS |
| CCGACATTGAAGAGAATCCG+GGG | 0.685264 | 5_1:-10857808 | Msa0717180:CDS |
| CAGGTTGCTGAATCGGTGGG+TGG | 0.688693 | 5_1:+10860881 | None:intergenic |
| AGGTAGTGCAAGGTGCACGT+CGG | 0.689430 | 5_1:+10857985 | None:intergenic |
| GGGTAAATGTAAATCACCTG+AGG | 0.697059 | 5_1:+10857553 | None:intergenic |
| ACATGAACAGTACCTTTCGG+CGG | 0.743025 | 5_1:+10860742 | None:intergenic |
| AATCTGTTAAGAGCAACGGA+GGG | 0.752755 | 5_1:-10858126 | Msa0717180:CDS |
| CAAACTCATCAATTTCCATG+GGG | 0.762481 | 5_1:-10857252 | Msa0717180:CDS |
| GTGTCGGTGAGTAAGAAACG+CGG | 0.800922 | 5_1:-10860769 | Msa0717180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAATAAACGATTTTAT+CGG | + | chr5_1:10857031-10857050 | None:intergenic | 10.0% |
| !!! | AAATTTGATCTTTTTTTTTT+TGG | - | chr5_1:10857407-10857426 | Msa0717180:intron | 10.0% |
| !!! | AATGTTATTCTTTCTATTTT+AGG | - | chr5_1:10857054-10857073 | Msa0717180:intron | 15.0% |
| !!! | ATGTTATTCTTTCTATTTTA+GGG | - | chr5_1:10857055-10857074 | Msa0717180:intron | 15.0% |
| !! | ATATAATTGTATGTAATCAA+TGG | - | chr5_1:10860173-10860192 | Msa0717180:intron | 15.0% |
| !! | TATAATTGTATGTAATCAAT+GGG | - | chr5_1:10860174-10860193 | Msa0717180:intron | 15.0% |
| !! | AATTTACAATTCATTGAATT+TGG | - | chr5_1:10860726-10860745 | Msa0717180:CDS | 15.0% |
| !!! | TTTTATTTAAATGAGAGAAA+CGG | - | chr5_1:10860980-10860999 | Msa0717180:five_prime_UTR | 15.0% |
| !!! | TGTTATTCTTTCTATTTTAG+GGG | - | chr5_1:10857056-10857075 | Msa0717180:intron | 20.0% |
| !!! | TGTTATTTTTGTGTTTATTG+TGG | - | chr5_1:10857159-10857178 | Msa0717180:intron | 20.0% |
| !! | AATTGAACTTAATTATGAGT+TGG | - | chr5_1:10857238-10857257 | Msa0717180:intron | 20.0% |
| !!! | ACTTATTTTAAATGACGTTT+CGG | + | chr5_1:10857342-10857361 | None:intergenic | 20.0% |
| !!! | ATGTGATTGTTTTTCTTTTA+TGG | - | chr5_1:10857464-10857483 | Msa0717180:CDS | 20.0% |
| !!! | TGTGATTGTTTTTCTTTTAT+GGG | - | chr5_1:10857465-10857484 | Msa0717180:CDS | 20.0% |
| !! | CTCTATATTTGAAAGTAAAA+TGG | - | chr5_1:10857552-10857571 | Msa0717180:CDS | 20.0% |
| !! | AAAAACGTGAATGAAAAATT+AGG | - | chr5_1:10857933-10857952 | Msa0717180:CDS | 20.0% |
| !! | AAAACGTGAATGAAAAATTA+GGG | - | chr5_1:10857934-10857953 | Msa0717180:CDS | 20.0% |
| !!! | ATTTTTATTTGAGTGTCTAA+TGG | - | chr5_1:10858260-10858279 | Msa0717180:CDS | 20.0% |
| !!! | TTAAGCTTTTCATGTATAAA+GGG | + | chr5_1:10858560-10858579 | None:intergenic | 20.0% |
| !!! | ATTAAGCTTTTCATGTATAA+AGG | + | chr5_1:10858561-10858580 | None:intergenic | 20.0% |
| !! | TTTATACATGAAAAGCTTAA+TGG | - | chr5_1:10858560-10858579 | Msa0717180:CDS | 20.0% |
| !!! | TTTATTTTCCAATGTAACAT+TGG | + | chr5_1:10859318-10859337 | None:intergenic | 20.0% |
| !!! | AGTTTAAATTTAGATTTGCT+AGG | - | chr5_1:10860251-10860270 | Msa0717180:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr5_1:10860490-10860509 | None:intergenic | 20.0% |
| !! | GTAACATAGTATTAATTGAA+GGG | + | chr5_1:10860524-10860543 | None:intergenic | 20.0% |
| !! | TGTAACATAGTATTAATTGA+AGG | + | chr5_1:10860525-10860544 | None:intergenic | 20.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | + | chr5_1:10860588-10860607 | None:intergenic | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | - | chr5_1:10860587-10860606 | Msa0717180:intron | 20.0% |
| !!! | CTAATAAGTTTTTTGTTTTC+AGG | - | chr5_1:10860758-10860777 | Msa0717180:CDS | 20.0% |
| !! | AAAAGAATGTTGTTATAAAC+AGG | + | chr5_1:10860872-10860891 | None:intergenic | 20.0% |
| !! | ATTATATAGCAAAATAGAGT+AGG | + | chr5_1:10860961-10860980 | None:intergenic | 20.0% |
| ! | ATGAAGTTGAAAAATGAGAA+TGG | + | chr5_1:10856556-10856575 | None:intergenic | 25.0% |
| ! | TTCTACTGATGATTAGAATT+TGG | - | chr5_1:10857310-10857329 | Msa0717180:intron | 25.0% |
| ! | TCTACTGATGATTAGAATTT+GGG | - | chr5_1:10857311-10857330 | Msa0717180:intron | 25.0% |
| !! | GAATTTAGTGTCTTTGTTTA+TGG | - | chr5_1:10857707-10857726 | Msa0717180:CDS | 25.0% |
| ! | TTCCTTGATCTATATGATAT+TGG | - | chr5_1:10857800-10857819 | Msa0717180:CDS | 25.0% |
| ! | TACCAATATCATATAGATCA+AGG | + | chr5_1:10857805-10857824 | None:intergenic | 25.0% |
| ! | AAAAACAGGAATGAAAATGT+AGG | - | chr5_1:10857887-10857906 | Msa0717180:CDS | 25.0% |
| ! | AAAACAGGAATGAAAATGTA+GGG | - | chr5_1:10857888-10857907 | Msa0717180:CDS | 25.0% |
| ! | TTATACAATTGTGTCAAAGA+TGG | - | chr5_1:10857969-10857988 | Msa0717180:CDS | 25.0% |
| ! | ATAAAACATGATCTATGCAA+GGG | + | chr5_1:10858039-10858058 | None:intergenic | 25.0% |
| ! | TATAAAACATGATCTATGCA+AGG | + | chr5_1:10858040-10858059 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTGCATTGCCT+AGG | - | chr5_1:10858297-10858316 | Msa0717180:CDS | 25.0% |
| ! | ACTATTTGAATCTACTATAC+AGG | + | chr5_1:10858835-10858854 | None:intergenic | 25.0% |
| ! | AAATAGTCCTATAAACAAGA+AGG | - | chr5_1:10858848-10858867 | Msa0717180:CDS | 25.0% |
| ! | CGAAATGAATACTAATGAAT+CGG | - | chr5_1:10858974-10858993 | Msa0717180:intron | 25.0% |
| ! | GGAAAATAAAGAAAATAGTC+AGG | - | chr5_1:10859328-10859347 | Msa0717180:intron | 25.0% |
| ! | AATAAAGAAAATAGTCAGGA+TGG | - | chr5_1:10859332-10859351 | Msa0717180:intron | 25.0% |
| ! | TGACAAGAAATTTCACATTT+AGG | + | chr5_1:10859575-10859594 | None:intergenic | 25.0% |
| ! | AAATGTGAAATTTCTTGTCA+TGG | - | chr5_1:10859575-10859594 | Msa0717180:intron | 25.0% |
| ! | TCATGGGAATGATAAAAAAT+TGG | - | chr5_1:10859682-10859701 | Msa0717180:intron | 25.0% |
| ! | GATAAAAAATTGGAAGTGAA+TGG | - | chr5_1:10859692-10859711 | Msa0717180:intron | 25.0% |
| !! | TGATTCAGTTTCAAATCTTT+TGG | - | chr5_1:10859862-10859881 | Msa0717180:intron | 25.0% |
| ! | ATAATCAGCAAACTATATCT+GGG | - | chr5_1:10860107-10860126 | Msa0717180:intron | 25.0% |
| !! | TATATTTTACACAAGACCAA+CGG | + | chr5_1:10860219-10860238 | None:intergenic | 25.0% |
| !!! | AAACGACACTCATTTTAAAA+CGG | + | chr5_1:10860424-10860443 | None:intergenic | 25.0% |
| ! | AAACAAACCAATAGTTGATT+AGG | - | chr5_1:10860578-10860597 | Msa0717180:intron | 25.0% |
| !!! | ACTCATTTTTTTTGAAACAG+AGG | - | chr5_1:10860677-10860696 | Msa0717180:CDS | 25.0% |
| !!! | CTCATTTTTTTTGAAACAGA+GGG | - | chr5_1:10860678-10860697 | Msa0717180:CDS | 25.0% |
| !!! | TTTTTGTTTTCAGGTTAACT+TGG | - | chr5_1:10860767-10860786 | Msa0717180:CDS | 25.0% |
| !! | GCTATTTATCTTTAGTCTTT+AGG | - | chr5_1:10860805-10860824 | Msa0717180:CDS | 25.0% |
| ! | TTGCAGAAATTTATAATCAG+CGG | - | chr5_1:10861019-10861038 | Msa0717180:five_prime_UTR | 25.0% |
| ATTTCCATTTCTCAGCTAAA+CGG | + | chr5_1:10857133-10857152 | None:intergenic | 30.0% | |
| !!! | AAGTTTTATTTTGTGCGAAG+TGG | - | chr5_1:10857358-10857377 | Msa0717180:intron | 30.0% |
| CTAAATTCATGCCTAATGAA+GGG | + | chr5_1:10857695-10857714 | None:intergenic | 30.0% | |
| ACTAAATTCATGCCTAATGA+AGG | + | chr5_1:10857696-10857715 | None:intergenic | 30.0% | |
| ATGGAAATTGTTGAAGATCA+AGG | - | chr5_1:10857726-10857745 | Msa0717180:CDS | 30.0% | |
| ! | TTGGTATGTTACTTCATGTT+TGG | - | chr5_1:10857819-10857838 | Msa0717180:CDS | 30.0% |
| TACAATAGATTTCTCATGCA+TGG | - | chr5_1:10858058-10858077 | Msa0717180:CDS | 30.0% | |
| AAACATGTGGATAAATGTCT+TGG | - | chr5_1:10858101-10858120 | Msa0717180:CDS | 30.0% | |
| ATAAATGTCTTGGATTATGC+AGG | - | chr5_1:10858111-10858130 | Msa0717180:CDS | 30.0% | |
| TGATCAGCTTGTCAAAAATA+GGG | + | chr5_1:10858224-10858243 | None:intergenic | 30.0% | |
| ATCTACTATACAGGAATTCT+CGG | + | chr5_1:10858826-10858845 | None:intergenic | 30.0% | |
| !!! | AAAGTGGTTATTTTGAACGA+AGG | - | chr5_1:10859540-10859559 | Msa0717180:intron | 30.0% |
| !!! | AAGTGGTTATTTTGAACGAA+GGG | - | chr5_1:10859541-10859560 | Msa0717180:intron | 30.0% |
| GTCATTCAAATTCTCATCAA+AGG | + | chr5_1:10859636-10859655 | None:intergenic | 30.0% | |
| ATTGGAAGTGAATGGAAATT+TGG | - | chr5_1:10859700-10859719 | Msa0717180:intron | 30.0% | |
| TTGGAAGTGAATGGAAATTT+GGG | - | chr5_1:10859701-10859720 | Msa0717180:intron | 30.0% | |
| TTGAAACTGAATCATCAACT+AGG | + | chr5_1:10859856-10859875 | None:intergenic | 30.0% | |
| GCTATAACTGATTGTTTACA+AGG | - | chr5_1:10859965-10859984 | Msa0717180:intron | 30.0% | |
| CATAATCAGCAAACTATATC+TGG | - | chr5_1:10860106-10860125 | Msa0717180:intron | 30.0% | |
| TAATCAGCAAACTATATCTG+GGG | - | chr5_1:10860108-10860127 | Msa0717180:intron | 30.0% | |
| ! | ATATTTTACACAAGACCAAC+GGG | + | chr5_1:10860218-10860237 | None:intergenic | 30.0% |
| CTAATCAATCAATTATGTGC+AGG | - | chr5_1:10860287-10860306 | Msa0717180:intron | 30.0% | |
| !! | TTCCTTAATTTGTGTGCAAT+TGG | - | chr5_1:10860644-10860663 | Msa0717180:intron | 30.0% |
| ! | GATTTTAGACCAACTTGAAT+CGG | - | chr5_1:10860835-10860854 | Msa0717180:CDS | 30.0% |
| ATTAAGTATCCGATTCAAGT+TGG | + | chr5_1:10860847-10860866 | None:intergenic | 30.0% | |
| AGAGAGAAACCCTAGAAATT+GGG | + | chr5_1:10856618-10856637 | None:intergenic | 35.0% | |
| TCCTTCAAATTCACCTTTCA+TGG | - | chr5_1:10856674-10856693 | Msa0717180:three_prime_UTR | 35.0% | |
| TCCATGAAAGGTGAATTTGA+AGG | + | chr5_1:10856678-10856697 | None:intergenic | 35.0% | |
| ! | TGGTGATTTTGTTCCATGAA+AGG | + | chr5_1:10856690-10856709 | None:intergenic | 35.0% |
| TGAACATGAACAGTACCTTT+CGG | + | chr5_1:10856852-10856871 | None:intergenic | 35.0% | |
| TACTGTTCATGTTCATACTC+CGG | - | chr5_1:10856857-10856876 | Msa0717180:intron | 35.0% | |
| CATACATCTTCTTCATCCTT+CGG | + | chr5_1:10856894-10856913 | None:intergenic | 35.0% | |
| GTATGCTTCATTTGCTTTGA+TGG | - | chr5_1:10856909-10856928 | Msa0717180:intron | 35.0% | |
| CACTTGTTCTATGTGATCAT+CGG | - | chr5_1:10856937-10856956 | Msa0717180:intron | 35.0% | |
| ! | TTTTCCGTTTAGCTGAGAAA+TGG | - | chr5_1:10857126-10857145 | Msa0717180:intron | 35.0% |
| TTAGCTGAGAAATGGAAATG+TGG | - | chr5_1:10857134-10857153 | Msa0717180:intron | 35.0% | |
| TTGCTTGTGTATTTGATGTC+TGG | - | chr5_1:10857657-10857676 | Msa0717180:CDS | 35.0% | |
| TGCTTGTGTATTTGATGTCT+GGG | - | chr5_1:10857658-10857677 | Msa0717180:CDS | 35.0% | |
| AATTGTTGAAGATCAAGGAG+TGG | - | chr5_1:10857731-10857750 | Msa0717180:CDS | 35.0% | |
| CAAGGAAAGAGAGAGAATTA+GGG | + | chr5_1:10857787-10857806 | None:intergenic | 35.0% | |
| TCAAGGAAAGAGAGAGAATT+AGG | + | chr5_1:10857788-10857807 | None:intergenic | 35.0% | |
| ! | ATGTTACTTCATGTTTGGTG+AGG | - | chr5_1:10857824-10857843 | Msa0717180:CDS | 35.0% |
| ! | TGTTACTTCATGTTTGGTGA+GGG | - | chr5_1:10857825-10857844 | Msa0717180:CDS | 35.0% |
| ! | CATTCACGTTTTTGTGATTC+TGG | + | chr5_1:10857926-10857945 | None:intergenic | 35.0% |
| !! | GTGTCAAAGATGGACTAATT+TGG | - | chr5_1:10857979-10857998 | Msa0717180:CDS | 35.0% |
| !! | CAAAGATGGACTAATTTGGA+AGG | - | chr5_1:10857983-10858002 | Msa0717180:CDS | 35.0% |
| !! | GTGTTTTTGCTTGAAACATG+TGG | - | chr5_1:10858088-10858107 | Msa0717180:CDS | 35.0% |
| GTGATCAGCTTGTCAAAAAT+AGG | + | chr5_1:10858225-10858244 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCATTGCCTAGGT+TGG | - | chr5_1:10858301-10858320 | Msa0717180:CDS | 35.0% |
| ! | TCTGATTTTGTTAGTGTCAG+AGG | - | chr5_1:10858411-10858430 | Msa0717180:CDS | 35.0% |
| GACCATTACCTTAATTCCTT+GGG | + | chr5_1:10858493-10858512 | None:intergenic | 35.0% | |
| AGACCATTACCTTAATTCCT+TGG | + | chr5_1:10858494-10858513 | None:intergenic | 35.0% | |
| ! | GCTTTTCATGTATAAAGGGA+GGG | + | chr5_1:10858556-10858575 | None:intergenic | 35.0% |
| ! | AGCTTTTCATGTATAAAGGG+AGG | + | chr5_1:10858557-10858576 | None:intergenic | 35.0% |
| CGCACTAAAAAAATAGCACA+AGG | + | chr5_1:10858608-10858627 | None:intergenic | 35.0% | |
| !!! | GCTATTTTTTTAGTGCGAAG+TGG | - | chr5_1:10858611-10858630 | Msa0717180:CDS | 35.0% |
| !! | ATTTTGATGATAGAAGCAGC+TGG | - | chr5_1:10858634-10858653 | Msa0717180:CDS | 35.0% |
| !! | TTTTGATGATAGAAGCAGCT+GGG | - | chr5_1:10858635-10858654 | Msa0717180:CDS | 35.0% |
| !! | AGTATCTTTTCAAGGTGTAC+TGG | - | chr5_1:10858658-10858677 | Msa0717180:CDS | 35.0% |
| CATCATCTTAAAGTTGACAC+TGG | - | chr5_1:10858792-10858811 | Msa0717180:CDS | 35.0% | |
| TCCTATAAACAAGAAGGCTA+AGG | - | chr5_1:10858854-10858873 | Msa0717180:CDS | 35.0% | |
| CCTATAAACAAGAAGGCTAA+GGG | - | chr5_1:10858855-10858874 | Msa0717180:CDS | 35.0% | |
| ! | TGTATTCACATTTAGCTCAC+AGG | + | chr5_1:10858940-10858959 | None:intergenic | 35.0% |
| AATGAATCGGCAATCAATGA+TGG | - | chr5_1:10858987-10859006 | Msa0717180:intron | 35.0% | |
| AACTGTGAACAACAGTCTTT+GGG | - | chr5_1:10859290-10859309 | Msa0717180:intron | 35.0% | |
| AGATTCATCTGTACCATTAG+GGG | + | chr5_1:10859447-10859466 | None:intergenic | 35.0% | |
| CAGATTCATCTGTACCATTA+GGG | + | chr5_1:10859448-10859467 | None:intergenic | 35.0% | |
| ACAGATTCATCTGTACCATT+AGG | + | chr5_1:10859449-10859468 | None:intergenic | 35.0% | |
| GATGAATCTGTTAAGAGCAA+CGG | - | chr5_1:10859458-10859477 | Msa0717180:intron | 35.0% | |
| TGTGAAATTTCTTGTCATGG+TGG | - | chr5_1:10859578-10859597 | Msa0717180:intron | 35.0% | |
| ! | AATGGAAATTTGGGTTCCAA+TGG | - | chr5_1:10859710-10859729 | Msa0717180:intron | 35.0% |
| ! | ATGGAAATTTGGGTTCCAAT+GGG | - | chr5_1:10859711-10859730 | Msa0717180:intron | 35.0% |
| ! | AAATCTTTTGGATGCAGTAG+CGG | - | chr5_1:10859874-10859893 | Msa0717180:intron | 35.0% |
| GATATTGATGTGTTCACTGA+TGG | - | chr5_1:10859941-10859960 | Msa0717180:intron | 35.0% | |
| !! | ATACTACCAGATTTTGATGC+AGG | - | chr5_1:10859992-10860011 | Msa0717180:intron | 35.0% |
| TTCAAAAACTCCTGAAGTTG+AGG | - | chr5_1:10860138-10860157 | Msa0717180:intron | 35.0% | |
| ACCAAACTCATCAATTTCCA+TGG | - | chr5_1:10860334-10860353 | Msa0717180:intron | 35.0% | |
| CCAAACTCATCAATTTCCAT+GGG | - | chr5_1:10860335-10860354 | Msa0717180:intron | 35.0% | |
| CAAACTCATCAATTTCCATG+GGG | - | chr5_1:10860336-10860355 | Msa0717180:intron | 35.0% | |
| TGATAGCAACTTAGTGAAGA+AGG | + | chr5_1:10860386-10860405 | None:intergenic | 35.0% | |
| !!! | GACACTCATTTTAAAACGGA+GGG | + | chr5_1:10860420-10860439 | None:intergenic | 35.0% |
| AGCCAATTGCACACAAATTA+AGG | + | chr5_1:10860649-10860668 | None:intergenic | 35.0% | |
| ! | GTTAACTTGGCAGATTACAT+TGG | - | chr5_1:10860780-10860799 | Msa0717180:CDS | 35.0% |
| GAGAGAAACCCTAGAAATTG+GGG | + | chr5_1:10856617-10856636 | None:intergenic | 40.0% | |
| GAGAGAGAAACCCTAGAAAT+TGG | + | chr5_1:10856619-10856638 | None:intergenic | 40.0% | |
| GGAATTACAGGTTGCTGAAT+CGG | + | chr5_1:10856717-10856736 | None:intergenic | 40.0% | |
| TGTAATTCCACCTCCAATTC+CGG | - | chr5_1:10856728-10856747 | Msa0717180:three_prime_UTR | 40.0% | |
| TGCTTCATTTGCTTTGATGG+TGG | - | chr5_1:10856912-10856931 | Msa0717180:intron | 40.0% | |
| !! | CTATTTTAGGGGTTGTCCTA+AGG | - | chr5_1:10857067-10857086 | Msa0717180:intron | 40.0% |
| AATGGTTCGTGTCTTTGTTC+TGG | - | chr5_1:10857570-10857589 | Msa0717180:CDS | 40.0% | |
| ATGGTTCGTGTCTTTGTTCT+GGG | - | chr5_1:10857571-10857590 | Msa0717180:CDS | 40.0% | |
| ! | ATTGTTGCTGGTTGAGAAGA+TGG | - | chr5_1:10857614-10857633 | Msa0717180:CDS | 40.0% |
| GCTTGTGTATTTGATGTCTG+GGG | - | chr5_1:10857659-10857678 | Msa0717180:CDS | 40.0% | |
| CTTGTGTATTTGATGTCTGG+GGG | - | chr5_1:10857660-10857679 | Msa0717180:CDS | 40.0% | |
| TTGTGTATTTGATGTCTGGG+GGG | - | chr5_1:10857661-10857680 | Msa0717180:CDS | 40.0% | |
| GATCCCAAATTCCCAATACT+TGG | + | chr5_1:10857856-10857875 | None:intergenic | 40.0% | |
| ! | TATTGGGAATTTGGGATCCT+TGG | - | chr5_1:10857858-10857877 | Msa0717180:CDS | 40.0% |
| ! | ATTGGGAATTTGGGATCCTT+GGG | - | chr5_1:10857859-10857878 | Msa0717180:CDS | 40.0% |
| CAGCTTGTCAAAAATAGGGA+AGG | + | chr5_1:10858220-10858239 | None:intergenic | 40.0% | |
| TGTCCATATTCCTTGTGCAA+GGG | - | chr5_1:10858372-10858391 | Msa0717180:CDS | 40.0% | |
| ! | TTTTGTACATCCCTTGCACA+AGG | + | chr5_1:10858385-10858404 | None:intergenic | 40.0% |
| GTTAGTGTCAGAGGAAACAA+AGG | - | chr5_1:10858420-10858439 | Msa0717180:CDS | 40.0% | |
| AGAGGAAACAAAGGTTTGTG+CGG | - | chr5_1:10858429-10858448 | Msa0717180:CDS | 40.0% | |
| TGCCCAAGGAATTAAGGTAA+TGG | - | chr5_1:10858488-10858507 | Msa0717180:CDS | 40.0% | |
| TTCATGTATAAAGGGAGGGA+GGG | + | chr5_1:10858552-10858571 | None:intergenic | 40.0% | |
| TTTCATGTATAAAGGGAGGG+AGG | + | chr5_1:10858553-10858572 | None:intergenic | 40.0% | |
| !! | GTGTACTGGTTGTACTTGAA+AGG | - | chr5_1:10858672-10858691 | Msa0717180:CDS | 40.0% |
| TCCTTCGAGCTAAAAATCCT+TGG | - | chr5_1:10858721-10858740 | Msa0717180:CDS | 40.0% | |
| !!! | TCCAAGGATTTTTAGCTCGA+AGG | + | chr5_1:10858725-10858744 | None:intergenic | 40.0% |
| CGAGCTAAAAATCCTTGGAA+AGG | - | chr5_1:10858726-10858745 | Msa0717180:CDS | 40.0% | |
| ! | TTTAAGATGATGACGCTTCC+GGG | + | chr5_1:10858784-10858803 | None:intergenic | 40.0% |
| !! | CTTTAAGATGATGACGCTTC+CGG | + | chr5_1:10858785-10858804 | None:intergenic | 40.0% |
| ! | CTTAAAGTTGACACTGGTTG+TGG | - | chr5_1:10858798-10858817 | Msa0717180:CDS | 40.0% |
| ! | CCCTTAGCCTTCTTGTTTAT+AGG | + | chr5_1:10858858-10858877 | None:intergenic | 40.0% |
| AGAAGGCTAAGGGAAATGTT+TGG | - | chr5_1:10858865-10858884 | Msa0717180:CDS | 40.0% | |
| GAAGGCTAAGGGAAATGTTT+GGG | - | chr5_1:10858866-10858885 | Msa0717180:CDS | 40.0% | |
| ! | AAATGTTTGGGACAGTGTCT+TGG | - | chr5_1:10858878-10858897 | Msa0717180:CDS | 40.0% |
| CACAGCAACGACATACTAAA+AGG | + | chr5_1:10859140-10859159 | None:intergenic | 40.0% | |
| TCTCTCCAGATCTCAGAATA+TGG | - | chr5_1:10859183-10859202 | Msa0717180:CDS | 40.0% | |
| TCCAGATCTCAGAATATGGA+GGG | - | chr5_1:10859187-10859206 | Msa0717180:CDS | 40.0% | |
| ! | GAGCGGCAATGATACATTTT+GGG | + | chr5_1:10859270-10859289 | None:intergenic | 40.0% |
| ! | TGAGCGGCAATGATACATTT+TGG | + | chr5_1:10859271-10859290 | None:intergenic | 40.0% |
| CAACTGTGAACAACAGTCTT+TGG | - | chr5_1:10859289-10859308 | Msa0717180:intron | 40.0% | |
| TTTGGGAGCCAATGTTACAT+TGG | - | chr5_1:10859307-10859326 | Msa0717180:intron | 40.0% | |
| ! | ATGGTCTTAGCAATGCAACA+AGG | - | chr5_1:10859351-10859370 | Msa0717180:intron | 40.0% |
| ATTCATCTGTACCATTAGGG+GGG | + | chr5_1:10859445-10859464 | None:intergenic | 40.0% | |
| GATTCATCTGTACCATTAGG+GGG | + | chr5_1:10859446-10859465 | None:intergenic | 40.0% | |
| AATCTGTTAAGAGCAACGGA+GGG | - | chr5_1:10859462-10859481 | Msa0717180:intron | 40.0% | |
| CAGATGGGAATATCAGTGAT+GGG | - | chr5_1:10859516-10859535 | Msa0717180:intron | 40.0% | |
| !! | AATATCAGTGATGGGCAAAG+TGG | - | chr5_1:10859524-10859543 | Msa0717180:intron | 40.0% |
| TTCTCATCAAAGGCAGTTGA+AGG | + | chr5_1:10859626-10859645 | None:intergenic | 40.0% | |
| TGACAAACCTTCTGATGAAG+TGG | - | chr5_1:10859652-10859671 | Msa0717180:intron | 40.0% | |
| TCACTTTGCCCACTATTACT+CGG | + | chr5_1:10859749-10859768 | None:intergenic | 40.0% | |
| ATCCGACATTGAAGAGAATC+CGG | - | chr5_1:10859778-10859797 | Msa0717180:intron | 40.0% | |
| CACATCAATATCCCACTCTT+CGG | + | chr5_1:10859933-10859952 | None:intergenic | 40.0% | |
| CCTTTACCTGCATCAAAATC+TGG | + | chr5_1:10860001-10860020 | None:intergenic | 40.0% | |
| !! | CCAGATTTTGATGCAGGTAA+AGG | - | chr5_1:10859998-10860017 | Msa0717180:intron | 40.0% |
| GGGTAAATGTAAATCACCTG+AGG | + | chr5_1:10860038-10860057 | None:intergenic | 40.0% | |
| !! | TTTGCTACAGTGGATTGAGA+GGG | + | chr5_1:10860058-10860077 | None:intergenic | 40.0% |
| !! | ATTTGCTACAGTGGATTGAG+AGG | + | chr5_1:10860059-10860078 | None:intergenic | 40.0% |
| TGCACATCTGCTTGATGAAA+CGG | + | chr5_1:10860088-10860107 | None:intergenic | 40.0% | |
| ! | ATTTTACGCACCTCAACTTC+AGG | + | chr5_1:10860151-10860170 | None:intergenic | 40.0% |
| ! | TTTGGTTCCAGCAAATACCT+GGG | + | chr5_1:10860320-10860339 | None:intergenic | 40.0% |
| CCCATGGAAATTGATGAGTT+TGG | + | chr5_1:10860338-10860357 | None:intergenic | 40.0% | |
| TAGAGAAACAACTTACGAGG+TGG | + | chr5_1:10860363-10860382 | None:intergenic | 40.0% | |
| AGGTAGAGAAACAACTTACG+AGG | + | chr5_1:10860366-10860385 | None:intergenic | 40.0% | |
| !!! | CGACACTCATTTTAAAACGG+AGG | + | chr5_1:10860421-10860440 | None:intergenic | 40.0% |
| ! | AAACAGAGGGAGTATAATCG+TGG | - | chr5_1:10860691-10860710 | Msa0717180:CDS | 40.0% |
| CATTACTTCCTCGACAATGA+AGG | + | chr5_1:10860917-10860936 | None:intergenic | 40.0% | |
| CTTCATTGTCGAGGAAGTAA+TGG | - | chr5_1:10860915-10860934 | Msa0717180:exon | 40.0% | |
| !! | GGTTTTGATCTGAGTGGACA+CGG | + | chr5_1:10856586-10856605 | None:intergenic | 45.0% |
| TTACAGGTTGCTGAATCGGT+GGG | + | chr5_1:10856713-10856732 | None:intergenic | 45.0% | |
| ATTACAGGTTGCTGAATCGG+TGG | + | chr5_1:10856714-10856733 | None:intergenic | 45.0% | |
| GGAATTGGAGGTGGAATTAC+AGG | + | chr5_1:10856729-10856748 | None:intergenic | 45.0% | |
| CTGATCATCGGAGTATGTTC+AGG | + | chr5_1:10856777-10856796 | None:intergenic | 45.0% | |
| !! | GCAGCGTTGATTCTGATCAT+CGG | + | chr5_1:10856789-10856808 | None:intergenic | 45.0% |
| ACATGAACAGTACCTTTCGG+CGG | + | chr5_1:10856849-10856868 | None:intergenic | 45.0% | |
| TTGTCCTAAGGCGTATCATC+CGG | - | chr5_1:10857079-10857098 | Msa0717180:intron | 45.0% | |
| TCATCTCGTTTAACACACGC+CGG | + | chr5_1:10857101-10857120 | None:intergenic | 45.0% | |
| TGGTTCGTGTCTTTGTTCTG+GGG | - | chr5_1:10857572-10857591 | Msa0717180:CDS | 45.0% | |
| TCAACCAGCAACAATTTCGC+CGG | + | chr5_1:10857609-10857628 | None:intergenic | 45.0% | |
| CCAAATTCCCAATACTTGGC+CGG | + | chr5_1:10857852-10857871 | None:intergenic | 45.0% | |
| !! | CGGCCAAGTATTGGGAATTT+GGG | - | chr5_1:10857850-10857869 | Msa0717180:CDS | 45.0% |
| ! | TTGGGAATTTGGGATCCTTG+GGG | - | chr5_1:10857860-10857879 | Msa0717180:CDS | 45.0% |
| ! | ATCCTTGGGGGTACAAAAAC+AGG | - | chr5_1:10857873-10857892 | Msa0717180:CDS | 45.0% |
| !!! | TTCCTGTTTTTGTACCCCCA+AGG | + | chr5_1:10857878-10857897 | None:intergenic | 45.0% |
| TGGCATCTATGTAGCGATTG+TGG | - | chr5_1:10858321-10858340 | Msa0717180:CDS | 45.0% | |
| GACAGGTATAGCACATGTAG+TGG | + | chr5_1:10858356-10858375 | None:intergenic | 45.0% | |
| CTTGCACAAGGAATATGGAC+AGG | + | chr5_1:10858373-10858392 | None:intergenic | 45.0% | |
| CTGTCCATATTCCTTGTGCA+AGG | - | chr5_1:10858371-10858390 | Msa0717180:CDS | 45.0% | |
| CATCCCTTGCACAAGGAATA+TGG | + | chr5_1:10858378-10858397 | None:intergenic | 45.0% | |
| GAACAGTGCCCAAGGAATTA+AGG | - | chr5_1:10858482-10858501 | Msa0717180:CDS | 45.0% | |
| TCATGTATAAAGGGAGGGAG+GGG | + | chr5_1:10858551-10858570 | None:intergenic | 45.0% | |
| !!! | CAGCTGGGAGTATCTTTTCA+AGG | - | chr5_1:10858650-10858669 | Msa0717180:CDS | 45.0% |
| ! | TTAAGATGATGACGCTTCCG+GGG | + | chr5_1:10858783-10858802 | None:intergenic | 45.0% |
| ! | CACATTTAGCTCACAGGTAG+TGG | + | chr5_1:10858934-10858953 | None:intergenic | 45.0% |
| !! | ATCAATGATGGCACTGATGC+AGG | - | chr5_1:10858999-10859018 | Msa0717180:intron | 45.0% |
| !! | TCAATGATGGCACTGATGCA+GGG | - | chr5_1:10859000-10859019 | Msa0717180:intron | 45.0% |
| GTTTCAAGACTAGGAGAGTC+TGG | - | chr5_1:10859023-10859042 | Msa0717180:intron | 45.0% | |
| TCATCGTTGCTTCACTCTAC+AGG | - | chr5_1:10859062-10859081 | Msa0717180:intron | 45.0% | |
| CATCGTTGCTTCACTCTACA+GGG | - | chr5_1:10859063-10859082 | Msa0717180:intron | 45.0% | |
| TGGCATTATCAGGATCCAAC+TGG | - | chr5_1:10859101-10859120 | Msa0717180:intron | 45.0% | |
| GGCATTATCAGGATCCAACT+GGG | - | chr5_1:10859102-10859121 | Msa0717180:intron | 45.0% | |
| TTATCAGGATCCAACTGGGA+AGG | - | chr5_1:10859106-10859125 | Msa0717180:intron | 45.0% | |
| ! | TCGTTGCTGTGCAAGTTGAA+AGG | - | chr5_1:10859149-10859168 | Msa0717180:CDS | 45.0% |
| CTCCAGATCTCAGAATATGG+AGG | - | chr5_1:10859186-10859205 | Msa0717180:CDS | 45.0% | |
| !! | ACCCTCCATATTCTGAGATC+TGG | + | chr5_1:10859191-10859210 | None:intergenic | 45.0% |
| GACTGTTGTTCACAGTTGAG+CGG | + | chr5_1:10859287-10859306 | None:intergenic | 45.0% | |
| TTCATCTGTACCATTAGGGG+GGG | + | chr5_1:10859444-10859463 | None:intergenic | 45.0% | |
| GAATCTGTTAAGAGCAACGG+AGG | - | chr5_1:10859461-10859480 | Msa0717180:intron | 45.0% | |
| TGTGTAGTCACACTAGGAGA+CGG | + | chr5_1:10859494-10859513 | None:intergenic | 45.0% | |
| TCTGCTTGTGTAGTCACACT+AGG | + | chr5_1:10859500-10859519 | None:intergenic | 45.0% | |
| AGTGTGACTACACAAGCAGA+TGG | - | chr5_1:10859500-10859519 | Msa0717180:intron | 45.0% | |
| GTGTGACTACACAAGCAGAT+GGG | - | chr5_1:10859501-10859520 | Msa0717180:intron | 45.0% | |
| GCAGATGGGAATATCAGTGA+TGG | - | chr5_1:10859515-10859534 | Msa0717180:intron | 45.0% | |
| CAAACCTTCTGATGAAGTGG+TGG | - | chr5_1:10859655-10859674 | Msa0717180:intron | 45.0% | |
| ! | ATGAAGTGGTGGAAGGTCAT+GGG | - | chr5_1:10859666-10859685 | Msa0717180:intron | 45.0% |
| TCCGACATTGAAGAGAATCC+GGG | - | chr5_1:10859779-10859798 | Msa0717180:intron | 45.0% | |
| TTCTGGTCAGAACTGGATGA+TGG | - | chr5_1:10859808-10859827 | Msa0717180:intron | 45.0% | |
| ATCAATATCCCACTCTTCGG+CGG | + | chr5_1:10859930-10859949 | None:intergenic | 45.0% | |
| TTTACACAAGACCAACGGGT+GGG | + | chr5_1:10860214-10860233 | None:intergenic | 45.0% | |
| ! | TTTTACACAAGACCAACGGG+TGG | + | chr5_1:10860215-10860234 | None:intergenic | 45.0% |
| TTCCAGCAAATACCTGGGAA+AGG | + | chr5_1:10860315-10860334 | None:intergenic | 45.0% | |
| ! | GTTTGGTTCCAGCAAATACC+TGG | + | chr5_1:10860321-10860340 | None:intergenic | 45.0% |
| ACTTCCTCGACAATGAAGGA+AGG | + | chr5_1:10860913-10860932 | None:intergenic | 45.0% | |
| !!! | TTAAAGAAAAAATAATATTT+TGG | + | chr5_1:10860554-10860573 | None:intergenic | 5.0% |
| AACCCTAGAAATTGGGGACG+CGG | + | chr5_1:10856611-10856630 | None:intergenic | 50.0% | |
| GTAAATTCTCCTCCGGTGAC+CGG | + | chr5_1:10856750-10856769 | None:intergenic | 50.0% | |
| GGTCACCGGAGGAGAATTTA+CGG | - | chr5_1:10856749-10856768 | Msa0717180:three_prime_UTR | 50.0% | |
| GTCACCGGAGGAGAATTTAC+GGG | - | chr5_1:10856750-10856769 | Msa0717180:three_prime_UTR | 50.0% | |
| AGGACCCGTAAATTCTCCTC+CGG | + | chr5_1:10856757-10856776 | None:intergenic | 50.0% | |
| AGAATCAACGCTGCTGATGC+TGG | - | chr5_1:10856795-10856814 | Msa0717180:three_prime_UTR | 50.0% | |
| ! | GTGTCGGTGAGTAAGAAACG+CGG | - | chr5_1:10856819-10856838 | Msa0717180:intron | 50.0% |
| TCCTTCGGCTTCTTCACAAC+CGG | + | chr5_1:10856879-10856898 | None:intergenic | 50.0% | |
| GGTTCGTGTCTTTGTTCTGG+GGG | - | chr5_1:10857573-10857592 | Msa0717180:CDS | 50.0% | |
| TGAACCGGCGAAATTGTTGC+TGG | - | chr5_1:10857602-10857621 | Msa0717180:CDS | 50.0% | |
| TATTTGATGTCTGGGGGGCT+TGG | - | chr5_1:10857666-10857685 | Msa0717180:CDS | 50.0% | |
| ! | GGGCTTGGTTTCCCTTCATT+AGG | - | chr5_1:10857681-10857700 | Msa0717180:CDS | 50.0% |
| AAGGAGTGGCGCTTGTAACT+GGG | - | chr5_1:10857745-10857764 | Msa0717180:CDS | 50.0% | |
| ! | CTTCATGTTTGGTGAGGGTC+CGG | - | chr5_1:10857830-10857849 | Msa0717180:CDS | 50.0% |
| !! | CCGGCCAAGTATTGGGAATT+TGG | - | chr5_1:10857849-10857868 | Msa0717180:CDS | 50.0% |
| ! | TGGGAATTTGGGATCCTTGG+GGG | - | chr5_1:10857861-10857880 | Msa0717180:CDS | 50.0% |
| CGCTACATAGATGCCAACCT+AGG | + | chr5_1:10858317-10858336 | None:intergenic | 50.0% | |
| GTTGCAAGGTTCAAACTCCC+CGG | - | chr5_1:10858763-10858782 | Msa0717180:CDS | 50.0% | |
| ! | GTTTGGGACAGTGTCTTGGA+CGG | - | chr5_1:10858882-10858901 | Msa0717180:CDS | 50.0% |
| !! | CAATGATGGCACTGATGCAG+GGG | - | chr5_1:10859001-10859020 | Msa0717180:intron | 50.0% |
| GATGCAGGGGTTTCAAGACT+AGG | - | chr5_1:10859014-10859033 | Msa0717180:intron | 50.0% | |
| GTTGCTTCACTCTACAGGGA+TGG | - | chr5_1:10859067-10859086 | Msa0717180:intron | 50.0% | |
| ACAGCCAGTCTGGCATTATC+AGG | - | chr5_1:10859091-10859110 | Msa0717180:intron | 50.0% | |
| ! | GGATCCTGATAATGCCAGAC+TGG | + | chr5_1:10859098-10859117 | None:intergenic | 50.0% |
| GATCCAACTGGGAAGGTTCA+TGG | - | chr5_1:10859113-10859132 | Msa0717180:CDS | 50.0% | |
| CAAGCAGAGCGAGGAAGATA+AGG | - | chr5_1:10859403-10859422 | Msa0717180:intron | 50.0% | |
| CAGAGCGAGGAAGATAAGGT+GGG | - | chr5_1:10859407-10859426 | Msa0717180:intron | 50.0% | |
| GATACTTGTACCCCCCCTAA+TGG | - | chr5_1:10859431-10859450 | Msa0717180:intron | 50.0% | |
| AGGCAGTTGAAGGTAGTGCA+AGG | + | chr5_1:10859616-10859635 | None:intergenic | 50.0% | |
| CCTTCCACCACTTCATCAGA+AGG | + | chr5_1:10859662-10859681 | None:intergenic | 50.0% | |
| ! | CCTTCTGATGAAGTGGTGGA+AGG | - | chr5_1:10859659-10859678 | Msa0717180:intron | 50.0% |
| ! | GATGAAGTGGTGGAAGGTCA+TGG | - | chr5_1:10859665-10859684 | Msa0717180:intron | 50.0% |
| GGTTCCAATGGGTCTTCTGA+GGG | - | chr5_1:10859722-10859741 | Msa0717180:intron | 50.0% | |
| TCTGAGGGTCCGAGTAATAG+TGG | - | chr5_1:10859737-10859756 | Msa0717180:intron | 50.0% | |
| CTGAGGGTCCGAGTAATAGT+GGG | - | chr5_1:10859738-10859757 | Msa0717180:intron | 50.0% | |
| CCCCGGATTCTCTTCAATGT+CGG | + | chr5_1:10859783-10859802 | None:intergenic | 50.0% | |
| CCGACATTGAAGAGAATCCG+GGG | - | chr5_1:10859780-10859799 | Msa0717180:intron | 50.0% | |
| TTCTGACCAGAAGATTGCCC+CGG | + | chr5_1:10859800-10859819 | None:intergenic | 50.0% | |
| GGCAATCTTCTGGTCAGAAC+TGG | - | chr5_1:10859801-10859820 | Msa0717180:intron | 50.0% | |
| ! | TGGATGATGGCAGCACTCTT+TGG | - | chr5_1:10859821-10859840 | Msa0717180:intron | 50.0% |
| ! | TCTTTTGGATGCAGTAGCGG+CGG | - | chr5_1:10859877-10859896 | Msa0717180:intron | 50.0% |
| ! | CGGTTGCTCATTTGCTACAG+TGG | + | chr5_1:10860068-10860087 | None:intergenic | 50.0% |
| CTCCTTTCCCAGGTATTTGC+TGG | - | chr5_1:10860310-10860329 | Msa0717180:intron | 50.0% | |
| ! | GAGGGAGTATAATCGTGGCT+AGG | - | chr5_1:10860696-10860715 | Msa0717180:CDS | 50.0% |
| CGACAATGAAGGAAGGTGAG+AGG | + | chr5_1:10860906-10860925 | None:intergenic | 50.0% | |
| CTCACCTTCCTTCATTGTCG+AGG | - | chr5_1:10860906-10860925 | Msa0717180:exon | 50.0% | |
| !! | GCGGTGGGTTTTGATCTGAG+TGG | + | chr5_1:10856592-10856611 | None:intergenic | 55.0% |
| CTAGAAATTGGGGACGCGGT+GGG | + | chr5_1:10856607-10856626 | None:intergenic | 55.0% | |
| CACCGCGTCCCCAATTTCTA+GGG | - | chr5_1:10856606-10856625 | Msa0717180:three_prime_UTR | 55.0% | |
| TCCGGTTGTGAAGAAGCCGA+AGG | - | chr5_1:10856875-10856894 | Msa0717180:intron | 55.0% | |
| ! | TTCTGGGGGCTGAACTGAAC+CGG | - | chr5_1:10857587-10857606 | Msa0717180:CDS | 55.0% |
| CAAGGAGTGGCGCTTGTAAC+TGG | - | chr5_1:10857744-10857763 | Msa0717180:CDS | 55.0% | |
| AGGAGTGGCGCTTGTAACTG+GGG | - | chr5_1:10857746-10857765 | Msa0717180:CDS | 55.0% | |
| TGAGGGTCCGGCCAAGTATT+GGG | - | chr5_1:10857842-10857861 | Msa0717180:CDS | 55.0% | |
| GTTTGTGCGGAGCATGCTTG+AGG | - | chr5_1:10858442-10858461 | Msa0717180:CDS | 55.0% | |
| CTGATCGAGAACAGTGCCCA+AGG | - | chr5_1:10858474-10858493 | Msa0717180:CDS | 55.0% | |
| GCACGAACAGCACCTTTCCA+AGG | + | chr5_1:10858741-10858760 | None:intergenic | 55.0% | |
| TGCTGTTCGTGCGAGTTGCA+AGG | - | chr5_1:10858749-10858768 | Msa0717180:CDS | 55.0% | |
| GACAGTGTCTTGGACGGTGT+TGG | - | chr5_1:10858888-10858907 | Msa0717180:CDS | 55.0% | |
| ! | AGTGTCTTGGACGGTGTTGG+AGG | - | chr5_1:10858891-10858910 | Msa0717180:CDS | 55.0% |
| GGACCATGAACCTTCCCAGT+TGG | + | chr5_1:10859119-10859138 | None:intergenic | 55.0% | |
| CCTCGCTCTGCTTGACAATC+TGG | + | chr5_1:10859397-10859416 | None:intergenic | 55.0% | |
| CCAGATTGTCAAGCAGAGCG+AGG | - | chr5_1:10859394-10859413 | Msa0717180:intron | 55.0% | |
| GCAGAGCGAGGAAGATAAGG+TGG | - | chr5_1:10859406-10859425 | Msa0717180:intron | 55.0% | |
| AGGTAGTGCAAGGTGCACGT+CGG | + | chr5_1:10859606-10859625 | None:intergenic | 55.0% | |
| GGGTTCCAATGGGTCTTCTG+AGG | - | chr5_1:10859721-10859740 | Msa0717180:intron | 55.0% | |
| GAGAATCCGGGGCAATCTTC+TGG | - | chr5_1:10859791-10859810 | Msa0717180:intron | 55.0% | |
| GGAGGAGAAACACAGCGTCA+CGG | - | chr5_1:10859898-10859917 | Msa0717180:intron | 55.0% | |
| ATATCCCACTCTTCGGCGGA+AGG | + | chr5_1:10859926-10859945 | None:intergenic | 55.0% | |
| CTGAAAACCATCCCACCCGT+TGG | - | chr5_1:10860200-10860219 | Msa0717180:intron | 55.0% | |
| TATGTGCAGGCTCCTTTCCC+AGG | - | chr5_1:10860300-10860319 | Msa0717180:intron | 55.0% | |
| AACTTACGAGGTGGACCCCA+TGG | + | chr5_1:10860354-10860373 | None:intergenic | 55.0% | |
| CCTAGAAATTGGGGACGCGG+TGG | + | chr5_1:10856608-10856627 | None:intergenic | 60.0% | |
| CCACCGCGTCCCCAATTTCT+AGG | - | chr5_1:10856605-10856624 | Msa0717180:three_prime_UTR | 60.0% | |
| CAGGTTGCTGAATCGGTGGG+TGG | + | chr5_1:10856710-10856729 | None:intergenic | 60.0% | |
| CCACCTCCAATTCCGGTCAC+CGG | - | chr5_1:10856735-10856754 | Msa0717180:three_prime_UTR | 60.0% | |
| TCTCCTCCGGTGACCGGAAT+TGG | + | chr5_1:10856744-10856763 | None:intergenic | 60.0% | |
| CACGCCGGATGATACGCCTT+AGG | + | chr5_1:10857086-10857105 | None:intergenic | 60.0% | |
| GGAGTGGCGCTTGTAACTGG+GGG | - | chr5_1:10857747-10857766 | Msa0717180:CDS | 60.0% | |
| GCGCTTGTAACTGGGGGAGT+GGG | - | chr5_1:10857753-10857772 | Msa0717180:CDS | 60.0% | |
| CGCTTGTAACTGGGGGAGTG+GGG | - | chr5_1:10857754-10857773 | Msa0717180:CDS | 60.0% | |
| GCTTGTAACTGGGGGAGTGG+GGG | - | chr5_1:10857755-10857774 | Msa0717180:CDS | 60.0% | |
| GTGAGGGTCCGGCCAAGTAT+TGG | - | chr5_1:10857841-10857860 | Msa0717180:CDS | 60.0% | |
| CAGGGATGGAACAGCCAGTC+TGG | - | chr5_1:10859081-10859100 | Msa0717180:intron | 60.0% | |
| GGTAGTGCAAGGTGCACGTC+GGG | + | chr5_1:10859605-10859624 | None:intergenic | 60.0% | |
| CGGACCCTCAGAAGACCCAT+TGG | + | chr5_1:10859729-10859748 | None:intergenic | 60.0% | |
| TTTGGATGCAGTAGCGGCGG+AGG | - | chr5_1:10859880-10859899 | Msa0717180:intron | 60.0% | |
| GGAACCTTCCGCCGAAGAGT+GGG | - | chr5_1:10859919-10859938 | Msa0717180:intron | 60.0% | |
| ! | GGTGATGCTCTGAGCTCCTC+AGG | - | chr5_1:10860019-10860038 | Msa0717180:intron | 60.0% |
| CACAAGACCAACGGGTGGGA+TGG | + | chr5_1:10860210-10860229 | None:intergenic | 60.0% | |
| CCGGTGACCGGAATTGGAGG+TGG | + | chr5_1:10856738-10856757 | None:intergenic | 65.0% | |
| CCTCCGGTGACCGGAATTGG+AGG | + | chr5_1:10856741-10856760 | None:intergenic | 65.0% | |
| CCTCCAATTCCGGTCACCGG+AGG | - | chr5_1:10856738-10856757 | Msa0717180:three_prime_UTR | 65.0% | |
| CGCTGCTGATGCTGGCGTGT+CGG | - | chr5_1:10856803-10856822 | Msa0717180:three_prime_UTR | 65.0% | |
| AAACGCGGTCGTCCGCCGAA+AGG | - | chr5_1:10856834-10856853 | Msa0717180:intron | 65.0% | |
| GGCGCTTGTAACTGGGGGAG+TGG | - | chr5_1:10857752-10857771 | Msa0717180:CDS | 65.0% | |
| CGGAACCTTCCGCCGAAGAG+TGG | - | chr5_1:10859918-10859937 | Msa0717180:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 10856551 | 10861059 | 10856551 | ID=Msa0717180;Name=Msa0717180 |
| chr5_1 | mRNA | 10856551 | 10861059 | 10856551 | ID=Msa0717180-mRNA-1;Parent=Msa0717180;Name=Msa0717180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=142|1|1|1|0.4|0.66|6|275|709 |
| chr5_1 | exon | 10856551 | 10856830 | 10856551 | ID=Msa0717180-mRNA-1:exon:4415;Parent=Msa0717180-mRNA-1 |
| chr5_1 | exon | 10857244 | 10857301 | 10857244 | ID=Msa0717180-mRNA-1:exon:4414;Parent=Msa0717180-mRNA-1 |
| chr5_1 | exon | 10857451 | 10858986 | 10857451 | ID=Msa0717180-mRNA-1:exon:4413;Parent=Msa0717180-mRNA-1 |
| chr5_1 | exon | 10859107 | 10859291 | 10859107 | ID=Msa0717180-mRNA-1:exon:4412;Parent=Msa0717180-mRNA-1 |
| chr5_1 | exon | 10860455 | 10860534 | 10860455 | ID=Msa0717180-mRNA-1:exon:4411;Parent=Msa0717180-mRNA-1 |
| chr5_1 | exon | 10860652 | 10861059 | 10860652 | ID=Msa0717180-mRNA-1:exon:4410;Parent=Msa0717180-mRNA-1 |
| chr5_1 | five_prime_UTR | 10860918 | 10861059 | 10860918 | ID=Msa0717180-mRNA-1:five_prime_utr;Parent=Msa0717180-mRNA-1 |
| chr5_1 | CDS | 10860652 | 10860917 | 10860652 | ID=Msa0717180-mRNA-1:cds;Parent=Msa0717180-mRNA-1 |
| chr5_1 | CDS | 10860455 | 10860534 | 10860455 | ID=Msa0717180-mRNA-1:cds;Parent=Msa0717180-mRNA-1 |
| chr5_1 | CDS | 10859107 | 10859291 | 10859107 | ID=Msa0717180-mRNA-1:cds;Parent=Msa0717180-mRNA-1 |
| chr5_1 | CDS | 10857451 | 10858986 | 10857451 | ID=Msa0717180-mRNA-1:cds;Parent=Msa0717180-mRNA-1 |
| chr5_1 | CDS | 10857244 | 10857301 | 10857244 | ID=Msa0717180-mRNA-1:cds;Parent=Msa0717180-mRNA-1 |
| chr5_1 | CDS | 10856826 | 10856830 | 10856826 | ID=Msa0717180-mRNA-1:cds;Parent=Msa0717180-mRNA-1 |
| chr5_1 | three_prime_UTR | 10856551 | 10856825 | 10856551 | ID=Msa0717180-mRNA-1:three_prime_utr;Parent=Msa0717180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
