Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799620 | XP_003612115.1 | 95.063 | 709 | 33 | 1 | 1 | 709 | 1 | 707 | 0.0 | 1356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799620 | sp|Q9SD34|C3H44_ARATH | 52.000 | 225 | 96 | 5 | 16 | 229 | 46 | 269 | 1.01e-67 | 245 |
| Msa0799620 | sp|Q9SD34|C3H44_ARATH | 46.154 | 78 | 39 | 1 | 324 | 398 | 703 | 780 | 2.12e-12 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799620 | G7KGD1 | 95.063 | 709 | 33 | 1 | 1 | 709 | 1 | 707 | 0.0 | 1356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030480 | Msa0799620 | 0.827810 | 1.273297e-54 | -8.615850e-47 |
| Msa0030530 | Msa0799620 | 0.829719 | 4.398941e-55 | -8.615850e-47 |
| Msa0051050 | Msa0799620 | 0.841651 | 4.175629e-58 | -8.615850e-47 |
| Msa0081940 | Msa0799620 | 0.820516 | 6.583194e-53 | -8.615850e-47 |
| Msa0082050 | Msa0799620 | 0.826011 | 3.428438e-54 | -8.615850e-47 |
| Msa0101240 | Msa0799620 | 0.856348 | 3.417726e-62 | -8.615850e-47 |
| Msa0717180 | Msa0799620 | 0.860026 | 2.750499e-63 | -8.615850e-47 |
| Msa0756170 | Msa0799620 | 0.804447 | 2.151224e-49 | -8.615850e-47 |
| Msa0758250 | Msa0799620 | 0.906735 | 1.080145e-80 | -8.615850e-47 |
| Msa0799620 | Msa0837870 | 0.854049 | 1.594106e-61 | -8.615850e-47 |
| Msa0799620 | Msa0865970 | 0.869761 | 2.430340e-66 | -8.615850e-47 |
| Msa0799620 | Msa0866070 | 0.872532 | 2.959460e-67 | -8.615850e-47 |
| Msa0799620 | Msa0903170 | 0.804456 | 2.141967e-49 | -8.615850e-47 |
| Msa0799620 | Msa1034700 | 0.835912 | 1.273134e-56 | -8.615850e-47 |
| Msa0799620 | Msa1063370 | 0.820228 | 7.663655e-53 | -8.615850e-47 |
| Msa0799620 | Msa1074140 | 0.809143 | 2.188861e-50 | -8.615850e-47 |
| Msa0799620 | Msa1074540 | 0.822000 | 2.993746e-53 | -8.615850e-47 |
| Msa0799620 | Msa1108720 | 0.804173 | 2.453233e-49 | -8.615850e-47 |
| Msa0799620 | Msa1114620 | 0.821295 | 4.355523e-53 | -8.615850e-47 |
| Msa0799620 | Msa1130470 | 0.827422 | 1.578631e-54 | -8.615850e-47 |
| Msa0799620 | Msa1130490 | 0.823471 | 1.360901e-53 | -8.615850e-47 |
| Msa0799620 | Msa1159600 | 0.821553 | 3.797120e-53 | -8.615850e-47 |
| Msa0799620 | Msa1268530 | 0.842035 | 3.305830e-58 | -8.615850e-47 |
| Msa0799620 | Msa1297960 | 0.803045 | 4.204423e-49 | -8.615850e-47 |
| Msa0799620 | Msa1341450 | 0.800750 | 1.244978e-48 | -8.615850e-47 |
| Msa0799620 | Msa1360420 | 0.861186 | 1.224034e-63 | -8.615850e-47 |
| Msa0799620 | Msa1366550 | 0.822254 | 2.613525e-53 | -8.615850e-47 |
| Msa0799620 | Msa1399260 | 0.894097 | 3.395417e-75 | -8.615850e-47 |
| Msa0799620 | Msa1417050 | 0.800430 | 1.446468e-48 | -8.615850e-47 |
| Msa0799620 | Msa1463030 | 0.824213 | 9.119228e-54 | -8.615850e-47 |
| Msa0128430 | Msa0799620 | 0.823433 | 1.389143e-53 | -8.615850e-47 |
| Msa0179100 | Msa0799620 | 0.859202 | 4.870320e-63 | -8.615850e-47 |
| Msa0194010 | Msa0799620 | 0.806866 | 6.680369e-50 | -8.615850e-47 |
| Msa0203400 | Msa0799620 | 0.834437 | 2.999255e-56 | -8.615850e-47 |
| Msa0235880 | Msa0799620 | 0.811437 | 7.005734e-51 | -8.615850e-47 |
| Msa0408340 | Msa0799620 | 0.800563 | 1.359278e-48 | -8.615850e-47 |
| Msa0246540 | Msa0799620 | 0.824942 | 6.141056e-54 | -8.615850e-47 |
| Msa0323880 | Msa0799620 | 0.829428 | 5.176545e-55 | -8.615850e-47 |
| Msa0583670 | Msa0799620 | 0.818142 | 2.287656e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799620 | MtrunA17_Chr5g0405031 | 95.063 | 709 | 33 | 1 | 1 | 709 | 1 | 707 | 0.0 | 1356 |
| Msa0799620 | MtrunA17_Chr5g0405071 | 63.934 | 244 | 78 | 6 | 22 | 262 | 51 | 287 | 1.93e-96 | 310 |
| Msa0799620 | MtrunA17_Chr5g0405061 | 40.936 | 513 | 201 | 11 | 242 | 696 | 15 | 483 | 3.31e-86 | 284 |
| Msa0799620 | MtrunA17_Chr3g0145201 | 56.219 | 201 | 75 | 3 | 46 | 245 | 214 | 402 | 5.29e-68 | 241 |
| Msa0799620 | MtrunA17_Chr3g0109671 | 38.462 | 130 | 77 | 2 | 65 | 192 | 9 | 137 | 1.06e-24 | 100 |
| Msa0799620 | MtrunA17_Chr7g0274551 | 48.515 | 101 | 51 | 1 | 70 | 170 | 25 | 124 | 1.76e-24 | 100 |
| Msa0799620 | MtrunA17_Chr3g0145231 | 60.000 | 60 | 23 | 1 | 116 | 175 | 4 | 62 | 6.39e-23 | 93.2 |
| Msa0799620 | MtrunA17_Chr3g0109641 | 36.184 | 152 | 90 | 3 | 71 | 218 | 15 | 163 | 8.47e-23 | 103 |
| Msa0799620 | MtrunA17_Chr3g0109631 | 35.526 | 152 | 91 | 3 | 71 | 218 | 15 | 163 | 1.35e-22 | 102 |
| Msa0799620 | MtrunA17_Chr3g0109611 | 36.842 | 152 | 89 | 3 | 71 | 218 | 15 | 163 | 1.60e-22 | 102 |
| Msa0799620 | MtrunA17_Chr3g0109591 | 34.839 | 155 | 94 | 3 | 65 | 215 | 9 | 160 | 2.81e-22 | 100 |
| Msa0799620 | MtrunA17_Chr3g0145221 | 58.904 | 73 | 19 | 1 | 46 | 118 | 214 | 275 | 2.69e-20 | 92.8 |
| Msa0799620 | MtrunA17_Chr3g0145251 | 57.895 | 57 | 24 | 0 | 336 | 392 | 160 | 216 | 2.75e-14 | 76.6 |
| Msa0799620 | MtrunA17_Chr3g0145241 | 48.571 | 70 | 36 | 0 | 176 | 245 | 1 | 70 | 7.94e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799620 | AT2G18090.2 | 60.000 | 175 | 67 | 2 | 62 | 234 | 70 | 243 | 5.92e-72 | 249 |
| Msa0799620 | AT2G18090.2 | 39.806 | 103 | 48 | 3 | 336 | 433 | 458 | 551 | 9.02e-11 | 65.9 |
| Msa0799620 | AT2G18090.1 | 60.000 | 175 | 67 | 2 | 62 | 234 | 70 | 243 | 1.06e-71 | 249 |
| Msa0799620 | AT3G51120.1 | 52.000 | 225 | 96 | 5 | 16 | 229 | 46 | 269 | 1.16e-68 | 245 |
| Msa0799620 | AT3G51120.1 | 46.154 | 78 | 39 | 1 | 324 | 398 | 716 | 793 | 2.14e-13 | 74.7 |
| Msa0799620 | AT2G16485.2 | 54.190 | 179 | 79 | 3 | 70 | 247 | 598 | 774 | 4.84e-58 | 214 |
| Msa0799620 | AT2G16485.1 | 54.190 | 179 | 79 | 3 | 70 | 247 | 598 | 774 | 4.95e-58 | 214 |
| Msa0799620 | AT5G63700.1 | 36.478 | 159 | 92 | 4 | 74 | 226 | 25 | 180 | 2.91e-26 | 114 |
| Msa0799620 | AT5G63700.2 | 36.478 | 159 | 92 | 4 | 74 | 226 | 25 | 180 | 4.09e-26 | 113 |
Find 212 sgRNAs with CRISPR-Local
Find 365 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGAAGTGAATGGAAATT+TGG | 0.118164 | 5_3:-12892076 | Msa0799620:CDS |
| CATAATCAGCAAACTATATC+TGG | 0.196965 | 5_3:-12891670 | Msa0799620:CDS |
| TGAGCGGCAATGATACATTT+TGG | 0.197931 | 5_3:+12892508 | None:intergenic |
| GAGAGAGAAACCCTAGAAAT+TGG | 0.201113 | 5_3:+12895160 | None:intergenic |
| CCACCGCGTCCCCAATTTCT+AGG | 0.225575 | 5_3:-12895171 | Msa0799620:five_prime_UTR |
| TGATTCAGTTTCAAATCTTT+TGG | 0.228594 | 5_3:-12891914 | Msa0799620:CDS |
| CCCTTAGCCTTCTTGTTTAT+AGG | 0.232558 | 5_3:+12892921 | None:intergenic |
| TGACAAGAAATTTCACATTT+AGG | 0.235639 | 5_3:+12892204 | None:intergenic |
| GCTATTTATCTTTAGTCTTT+AGG | 0.235773 | 5_3:-12890954 | Msa0799620:three_prime_UTR |
| TCCTTCAAATTCACCTTTCA+TGG | 0.246825 | 5_3:-12895104 | Msa0799620:exon |
| CTCCTTTCCCAGGTATTTGC+TGG | 0.263713 | 5_3:-12891466 | Msa0799620:CDS |
| CCTCGCTCTGCTTGACAATC+TGG | 0.265321 | 5_3:+12892382 | None:intergenic |
| CAGATTCATCTGTACCATTA+GGG | 0.289928 | 5_3:+12892331 | None:intergenic |
| TCTCCTCCGGTGACCGGAAT+TGG | 0.295334 | 5_3:+12895037 | None:intergenic |
| CAACTGTGAACAACAGTCTT+TGG | 0.297579 | 5_3:-12892487 | Msa0799620:CDS |
| CATCCCTTGCACAAGGAATA+TGG | 0.304040 | 5_3:+12893401 | None:intergenic |
| CTTTAAGATGATGACGCTTC+CGG | 0.306685 | 5_3:+12892994 | None:intergenic |
| TTGGAAGTGAATGGAAATTT+GGG | 0.307833 | 5_3:-12892075 | Msa0799620:CDS |
| GTATGCTTCATTTGCTTTGA+TGG | 0.312007 | 5_3:-12894869 | Msa0799620:CDS |
| ACAGATTCATCTGTACCATT+AGG | 0.319043 | 5_3:+12892330 | None:intergenic |
| GAACAGTGCCCAAGGAATTA+AGG | 0.342151 | 5_3:-12893294 | Msa0799620:intron |
| GAGAATCCGGGGCAATCTTC+TGG | 0.344732 | 5_3:-12891985 | Msa0799620:CDS |
| CACAGCAACGACATACTAAA+AGG | 0.351524 | 5_3:+12892639 | None:intergenic |
| TCTCTCCAGATCTCAGAATA+TGG | 0.356724 | 5_3:-12892593 | Msa0799620:CDS |
| AGACCATTACCTTAATTCCT+TGG | 0.360246 | 5_3:+12893285 | None:intergenic |
| ATCAATGATGGCACTGATGC+AGG | 0.365231 | 5_3:-12892777 | Msa0799620:CDS |
| TTTAAGATGATGACGCTTCC+GGG | 0.365840 | 5_3:+12892995 | None:intergenic |
| AAAAGAATGTTGTTATAAAC+AGG | 0.366748 | 5_3:+12890890 | None:intergenic |
| GGAATTGGAGGTGGAATTAC+CGG | 0.371970 | 5_3:+12895052 | None:intergenic |
| TGGATGATGGCAGCACTCTT+TGG | 0.372356 | 5_3:-12891955 | Msa0799620:CDS |
| CCCATGGAAATTGATGAGTT+TGG | 0.376010 | 5_3:+12891441 | None:intergenic |
| AACTGTGAACAACAGTCTTT+GGG | 0.383075 | 5_3:-12892486 | Msa0799620:CDS |
| AGAGAGAAACCCTAGAAATT+GGG | 0.383879 | 5_3:+12895161 | None:intergenic |
| TCATCGTTGCTTCACTCTAC+AGG | 0.389729 | 5_3:-12892714 | Msa0799620:CDS |
| ACAGCCAGTCTGGCATTATC+AGG | 0.391683 | 5_3:-12892685 | Msa0799620:CDS |
| GGTAATTCCACCTCCAATTC+CGG | 0.395388 | 5_3:-12895050 | Msa0799620:CDS |
| CCTTTACCTGCATCAAAATC+TGG | 0.396203 | 5_3:+12891778 | None:intergenic |
| GGCAATCTTCTGGTCAGAAC+TGG | 0.396564 | 5_3:-12891975 | Msa0799620:CDS |
| TCCTTCGGCTTCTTCACAAC+CGG | 0.407221 | 5_3:+12894902 | None:intergenic |
| GACCATTACCTTAATTCCTT+GGG | 0.410068 | 5_3:+12893286 | None:intergenic |
| TACTGTTCATGTTCATTCTC+CGG | 0.412077 | 5_3:-12894921 | Msa0799620:CDS |
| AGAAGGCTAAGGGAAATGTT+TGG | 0.415137 | 5_3:-12892911 | Msa0799620:CDS |
| CATACATCTTCTTCATCCTT+CGG | 0.416063 | 5_3:+12894887 | None:intergenic |
| ATCCGACATTGAAGAGAATC+CGG | 0.417257 | 5_3:-12891998 | Msa0799620:CDS |
| CACATTTAGCTCACAGGTAG+TGG | 0.423134 | 5_3:+12892845 | None:intergenic |
| ACCCTCCATATTCTGAGATC+TGG | 0.425115 | 5_3:+12892588 | None:intergenic |
| GGAATTACCGGTTGCTGAAT+CGG | 0.425535 | 5_3:+12895064 | None:intergenic |
| CAGGGATGGAACAGCCAGTC+TGG | 0.425617 | 5_3:-12892695 | Msa0799620:CDS |
| GATCCAACTGGGAAGGTTCA+TGG | 0.426904 | 5_3:-12892663 | Msa0799620:CDS |
| GAAGGCTAAGGGAAATGTTT+GGG | 0.432087 | 5_3:-12892910 | Msa0799620:CDS |
| TGGCATTATCAGGATCCAAC+TGG | 0.436208 | 5_3:-12892675 | Msa0799620:CDS |
| TGCACATCTGCTTGCTGAAA+CGG | 0.437547 | 5_3:+12891691 | None:intergenic |
| GGTCACCGGAGGAGAATTTA+CGG | 0.438703 | 5_3:-12895029 | Msa0799620:CDS |
| GTTTGGTTCCAGCAAATACC+TGG | 0.442053 | 5_3:+12891458 | None:intergenic |
| TATGTGCAGGCTCCTTTCCC+AGG | 0.444452 | 5_3:-12891476 | Msa0799620:intron |
| CCACCCACCGATTCAGCAAC+CGG | 0.445418 | 5_3:-12895071 | Msa0799620:CDS |
| ATTTCCATTTCTCAGCTAAA+CGG | 0.448596 | 5_3:+12894647 | None:intergenic |
| GGTTCCAATGGGTCTTCTGA+GGG | 0.448819 | 5_3:-12892054 | Msa0799620:CDS |
| CTTAAAGTTGACACTGGTTG+TGG | 0.455952 | 5_3:-12892978 | Msa0799620:CDS |
| GGAATCAACGCTGCTGATGC+TGG | 0.458848 | 5_3:-12894983 | Msa0799620:CDS |
| ATCTACTATACAGGAATTCT+CGG | 0.459300 | 5_3:+12892953 | None:intergenic |
| CACTTGTTCTATGTGATCAT+CGG | 0.460519 | 5_3:-12894841 | Msa0799620:intron |
| ACTATTTGAATCTACTATAC+AGG | 0.461919 | 5_3:+12892944 | None:intergenic |
| CCCCGGATTCTCTTCAATGT+CGG | 0.462369 | 5_3:+12891996 | None:intergenic |
| GGGTTCCAATGGGTCTTCTG+AGG | 0.463383 | 5_3:-12892055 | Msa0799620:CDS |
| TCTGAGGGTCCGAGTAATAG+TGG | 0.465669 | 5_3:-12892039 | Msa0799620:CDS |
| GTTTCAAGACTAGGAGAGTC+TGG | 0.467881 | 5_3:-12892753 | Msa0799620:CDS |
| AAATGTTTGGGACAGTGTCT+TGG | 0.472814 | 5_3:-12892898 | Msa0799620:CDS |
| GTAAATTCTCCTCCGGTGAC+CGG | 0.474128 | 5_3:+12895031 | None:intergenic |
| GGTGATGCTCTGAGCTCCTC+AGG | 0.475026 | 5_3:-12891757 | Msa0799620:CDS |
| GGAAAATAAAGAAAATAGTC+AGG | 0.478338 | 5_3:-12892448 | Msa0799620:CDS |
| CCGATCATCGGAGTATGTTC+AGG | 0.479066 | 5_3:+12895004 | None:intergenic |
| CAAGCAGAGCGAGGAAGAAA+AGG | 0.480349 | 5_3:-12892373 | Msa0799620:CDS |
| CGAAATGAATACTAATGAAT+CGG | 0.480617 | 5_3:-12892802 | Msa0799620:CDS |
| CGCTGCTGATGCTGGCGTGT+CGG | 0.481436 | 5_3:-12894975 | Msa0799620:CDS |
| CCTCCGGTGACCGGAATTGG+AGG | 0.484238 | 5_3:+12895040 | None:intergenic |
| TTCTCATCAAAGGCAGTTGA+AGG | 0.484294 | 5_3:+12892153 | None:intergenic |
| GTCATTCAAATTCTCATCAA+AGG | 0.485039 | 5_3:+12892143 | None:intergenic |
| CGGAACCTTCCGCCGAAGAG+TGG | 0.485800 | 5_3:-12891858 | Msa0799620:CDS |
| CTTCACTGTCGAGGAAGTAA+TGG | 0.486569 | 5_3:-12890844 | Msa0799620:three_prime_UTR |
| GACAGTGTCTTGGACGGTGT+TGG | 0.488955 | 5_3:-12892888 | Msa0799620:CDS |
| CACCGCGTCCCCAATTTCTA+GGG | 0.489872 | 5_3:-12895170 | Msa0799620:five_prime_UTR |
| TCCGACATTGAAGAGAATCC+GGG | 0.491196 | 5_3:-12891997 | Msa0799620:CDS |
| CACATCAATATCCCACTCTT+CGG | 0.493275 | 5_3:+12891846 | None:intergenic |
| ATAATCAGCAAACTATATCT+GGG | 0.493948 | 5_3:-12891669 | Msa0799620:CDS |
| GCTATAACTGATTGTTTACA+AGG | 0.495168 | 5_3:-12891811 | Msa0799620:CDS |
| TCCTATAAACAAGAAGGCTA+AGG | 0.495961 | 5_3:-12892922 | Msa0799620:CDS |
| ACCAAACTCATCAATTTCCA+TGG | 0.504868 | 5_3:-12891442 | Msa0799620:CDS |
| AATGGAAATTTGGGTTCCAA+TGG | 0.512272 | 5_3:-12892066 | Msa0799620:CDS |
| TGAACATGAACAGTACCTTT+CGG | 0.514543 | 5_3:+12894929 | None:intergenic |
| TTGTCCTAAGGCGTATCATC+CGG | 0.517465 | 5_3:-12894698 | Msa0799620:CDS |
| GGTAGTGCAAGGTGTACGTC+GGG | 0.517896 | 5_3:+12892174 | None:intergenic |
| CGGTTGCTCATTTGCTACAG+TGG | 0.521421 | 5_3:+12891711 | None:intergenic |
| CCGGTGACCGGAATTGGAGG+TGG | 0.522586 | 5_3:+12895043 | None:intergenic |
| CATCGTTGCTTCACTCTACA+GGG | 0.522838 | 5_3:-12892713 | Msa0799620:CDS |
| ATGGAAATTTGGGTTCCAAT+GGG | 0.523751 | 5_3:-12892065 | Msa0799620:CDS |
| TTTGGATGCAGTAGCGGCGG+AGG | 0.526604 | 5_3:-12891896 | Msa0799620:CDS |
| AATGAATCGGCAATCAATGA+TGG | 0.530611 | 5_3:-12892789 | Msa0799620:CDS |
| ATTATATAGCAAAATAGAGT+AGG | 0.532114 | 5_3:+12890801 | None:intergenic |
| TCAATGATGGCACTGATGCA+GGG | 0.532158 | 5_3:-12892776 | Msa0799620:CDS |
| CCTTCCACCACTTCATCAGA+AGG | 0.532926 | 5_3:+12892117 | None:intergenic |
| CCTATAAACAAGAAGGCTAA+GGG | 0.533302 | 5_3:-12892921 | Msa0799620:CDS |
| TTCTGACCAGAAGATTGCCC+CGG | 0.533652 | 5_3:+12891979 | None:intergenic |
| AACTTACGAGGTGGACCCCA+TGG | 0.535838 | 5_3:+12891425 | None:intergenic |
| GTGTACTGGTTGTACTTGAA+AGG | 0.537125 | 5_3:-12893104 | Msa0799620:CDS |
| TGCTGTTCGTGCGAGTTGCA+AGG | 0.542742 | 5_3:-12893027 | Msa0799620:CDS |
| TCCATGAAAGGTGAATTTGA+AGG | 0.542867 | 5_3:+12895103 | None:intergenic |
| CCACCTCCAATTCCGGTCAC+CGG | 0.545856 | 5_3:-12895043 | Msa0799620:CDS |
| AGTGTCTTGGACGGTGTTGG+AGG | 0.546056 | 5_3:-12892885 | Msa0799620:CDS |
| TTTGGGAGCCAATGTTACAT+TGG | 0.547021 | 5_3:-12892469 | Msa0799620:CDS |
| TTCTGGTCAGAACTGGATGA+TGG | 0.548380 | 5_3:-12891968 | Msa0799620:CDS |
| TCACTTTGCCCACTATTACT+CGG | 0.553393 | 5_3:+12892030 | None:intergenic |
| AAATGTGAAATTTCTTGTCA+TGG | 0.555258 | 5_3:-12892201 | Msa0799620:CDS |
| GTTAACTTGGCAGATTACAT+TGG | 0.556462 | 5_3:-12890979 | Msa0799620:exon |
| GCAGATGGGAATATCAGTGA+TGG | 0.557781 | 5_3:-12892261 | Msa0799620:CDS |
| ATATCCCACTCTTCGGCGGA+AGG | 0.557902 | 5_3:+12891853 | None:intergenic |
| ATTAAGTATCCGATTCAAGT+TGG | 0.557909 | 5_3:+12890915 | None:intergenic |
| GCACGAACAGCACCTTTCCA+AGG | 0.558666 | 5_3:+12893038 | None:intergenic |
| AGGACCCGTAAATTCTCCTC+CGG | 0.559723 | 5_3:+12895024 | None:intergenic |
| GATGAAGTGGTGGAAGGTCA+TGG | 0.560027 | 5_3:-12892111 | Msa0799620:CDS |
| GCAGAGCGAGGAAGAAAAGG+TGG | 0.561088 | 5_3:-12892370 | Msa0799620:CDS |
| CATTACTTCCTCGACAGTGA+AGG | 0.563336 | 5_3:+12890845 | None:intergenic |
| CCAAACTCATCAATTTCCAT+GGG | 0.564845 | 5_3:-12891441 | Msa0799620:CDS |
| TTGCAGAAATTTATAATCAG+CGG | 0.565688 | 5_3:-12890740 | Msa0799620:three_prime_UTR |
| CCTGAACATACTCCGATGAT+CGG | 0.567053 | 5_3:-12895004 | Msa0799620:CDS |
| TGTATTCACATTTAGCTCAC+AGG | 0.568532 | 5_3:+12892839 | None:intergenic |
| GGATCCTGATAATGCCAGAC+TGG | 0.570283 | 5_3:+12892681 | None:intergenic |
| TGCTTCATTTGCTTTGATGG+TGG | 0.571881 | 5_3:-12894866 | Msa0799620:CDS |
| AAATAGTCCTATAAACAAGA+AGG | 0.573367 | 5_3:-12892928 | Msa0799620:CDS |
| GATATTGATGTGTTCACTGA+TGG | 0.573671 | 5_3:-12891835 | Msa0799620:CDS |
| TGGCATCTATGTAGCGATTG+TGG | 0.573894 | 5_3:-12893455 | Msa0799620:CDS |
| AATAAAGAAAATAGTCAGGA+TGG | 0.574172 | 5_3:-12892444 | Msa0799620:CDS |
| GTCACCGGAGGAGAATTTAC+GGG | 0.579781 | 5_3:-12895028 | Msa0799620:CDS |
| CTTGCACAAGGAATATGGAC+AGG | 0.580161 | 5_3:+12893406 | None:intergenic |
| GATGAATCTGTTAAGAGCAA+CGG | 0.581049 | 5_3:-12892318 | Msa0799620:CDS |
| GTTTGTGCGGAGCATGCTTG+AGG | 0.586691 | 5_3:-12893334 | Msa0799620:CDS |
| GGACCATGAACCTTCCCAGT+TGG | 0.586869 | 5_3:+12892660 | None:intergenic |
| CCTAGAAATTGGGGACGCGG+TGG | 0.587454 | 5_3:+12895171 | None:intergenic |
| CTAGAAATTGGGGACGCGGT+GGG | 0.588421 | 5_3:+12895172 | None:intergenic |
| AAACGCGGCCGTCCGCCGAA+AGG | 0.589025 | 5_3:-12894944 | Msa0799620:CDS |
| GGAACCTTCCGCCGAAGAGT+GGG | 0.589294 | 5_3:-12891857 | Msa0799620:CDS |
| TGTCCATATTCCTTGTGCAA+GGG | 0.590101 | 5_3:-12893404 | Msa0799620:CDS |
| GGCATTATCAGGATCCAACT+GGG | 0.591161 | 5_3:-12892674 | Msa0799620:CDS |
| AGTGTGACTACACAAGCAGA+TGG | 0.591958 | 5_3:-12892276 | Msa0799620:CDS |
| AACCCTAGAAATTGGGGACG+CGG | 0.592171 | 5_3:+12895168 | None:intergenic |
| GTTAGTGTCAGAGGAAACAA+AGG | 0.592996 | 5_3:-12893356 | Msa0799620:CDS |
| GATTCATCTGTACCATTAGG+GGG | 0.594328 | 5_3:+12892333 | None:intergenic |
| CCTTCTGATGAAGTGGTGGA+AGG | 0.595557 | 5_3:-12892117 | Msa0799620:CDS |
| CATCATCTTAAAGTTGACAC+TGG | 0.595832 | 5_3:-12892984 | Msa0799620:CDS |
| CTGATCGAGAACAGTGCCCA+AGG | 0.596069 | 5_3:-12893302 | Msa0799620:CDS |
| CACGCCGGATGATACGCCTT+AGG | 0.596118 | 5_3:+12894694 | None:intergenic |
| CTCCAGATCTCAGAATATGG+AGG | 0.596407 | 5_3:-12892590 | Msa0799620:CDS |
| CGGACCCTCAGAAGACCCAT+TGG | 0.597449 | 5_3:+12892050 | None:intergenic |
| CAATGATGGCACTGATGCAG+GGG | 0.597789 | 5_3:-12892775 | Msa0799620:CDS |
| CTGTCCATATTCCTTGTGCA+AGG | 0.598848 | 5_3:-12893405 | Msa0799620:CDS |
| GAGAGAAACCCTAGAAATTG+GGG | 0.601055 | 5_3:+12895162 | None:intergenic |
| ATTTGCTACAGTGGATTGAG+AGG | 0.601818 | 5_3:+12891720 | None:intergenic |
| TCTGCTTGTGTAGTCACACT+AGG | 0.601867 | 5_3:+12892279 | None:intergenic |
| GATGCAGGGGTTTCAAGACT+AGG | 0.604571 | 5_3:-12892762 | Msa0799620:CDS |
| GTTGCTTCACTCTACAGGGA+TGG | 0.604743 | 5_3:-12892709 | Msa0799620:CDS |
| TTTGCTACAGTGGATTGAGA+GGG | 0.605774 | 5_3:+12891721 | None:intergenic |
| GCAGCGTTGATTCCGATCAT+CGG | 0.607097 | 5_3:+12894992 | None:intergenic |
| GAACAGTACCTTTCGGCGGA+CGG | 0.607767 | 5_3:+12894936 | None:intergenic |
| TCCAGATCTCAGAATATGGA+GGG | 0.608096 | 5_3:-12892589 | Msa0799620:CDS |
| CAGATGGGAATATCAGTGAT+GGG | 0.610058 | 5_3:-12892260 | Msa0799620:CDS |
| GTTGCAAGGTTCAAACTCCC+CGG | 0.610227 | 5_3:-12893013 | Msa0799620:CDS |
| ATTACCGGTTGCTGAATCGG+TGG | 0.610608 | 5_3:+12895067 | None:intergenic |
| ATCAATATCCCACTCTTCGG+CGG | 0.610806 | 5_3:+12891849 | None:intergenic |
| TTACCGGTTGCTGAATCGGT+GGG | 0.611860 | 5_3:+12895068 | None:intergenic |
| CTGAGGGTCCGAGTAATAGT+GGG | 0.616707 | 5_3:-12892038 | Msa0799620:CDS |
| TTCCAGCAAATACCTGGGAA+AGG | 0.617718 | 5_3:+12891464 | None:intergenic |
| ATGAAGTGGTGGAAGGTCAT+GGG | 0.621645 | 5_3:-12892110 | Msa0799620:CDS |
| GACTGTTGTTCACAGTTGAG+CGG | 0.623812 | 5_3:+12892492 | None:intergenic |
| CTCACCTTCCTTCACTGTCG+AGG | 0.626701 | 5_3:-12890853 | Msa0799620:three_prime_UTR |
| GTGTGACTACACAAGCAGAT+GGG | 0.629009 | 5_3:-12892275 | Msa0799620:CDS |
| TTGAAACTGAATCATCAACT+AGG | 0.629198 | 5_3:+12891923 | None:intergenic |
| TTCATCTGTACCATTAGGGG+GGG | 0.630127 | 5_3:+12892335 | None:intergenic |
| TTAAGATGATGACGCTTCCG+GGG | 0.630843 | 5_3:+12892996 | None:intergenic |
| TTATCAGGATCCAACTGGGA+AGG | 0.637004 | 5_3:-12892670 | Msa0799620:CDS |
| CAGAGCGAGGAAGAAAAGGT+GGG | 0.637763 | 5_3:-12892369 | Msa0799620:CDS |
| GAATCTGTTAAGAGCAACGG+AGG | 0.639328 | 5_3:-12892315 | Msa0799620:CDS |
| AATATCAGTGATGGGCAAAG+TGG | 0.641070 | 5_3:-12892252 | Msa0799620:CDS |
| CCAGATTGTCAAGCAGAGCG+AGG | 0.642283 | 5_3:-12892382 | Msa0799620:CDS |
| ACTTCCTCGACAGTGAAGGA+AGG | 0.642538 | 5_3:+12890849 | None:intergenic |
| GACAGGTATAGCACATGTAG+TGG | 0.644673 | 5_3:+12893423 | None:intergenic |
| TTTGGTTCCAGCAAATACCT+GGG | 0.645945 | 5_3:+12891459 | None:intergenic |
| TGACAAACCTTCTGATGAAG+TGG | 0.646213 | 5_3:-12892124 | Msa0799620:CDS |
| AGATTCATCTGTACCATTAG+GGG | 0.648209 | 5_3:+12892332 | None:intergenic |
| CCTCCAATTCCGGTCACCGG+AGG | 0.649112 | 5_3:-12895040 | Msa0799620:CDS |
| TCGTTGCTGTGCAAGTTGAA+AGG | 0.650161 | 5_3:-12892627 | Msa0799620:CDS |
| ATTCATCTGTACCATTAGGG+GGG | 0.651828 | 5_3:+12892334 | None:intergenic |
| AGGCAGTTGAAGGTAGTGCA+AGG | 0.655786 | 5_3:+12892163 | None:intergenic |
| CGACAGTGAAGGAAGGTGAG+AGG | 0.657376 | 5_3:+12890856 | None:intergenic |
| CAAACCTTCTGATGAAGTGG+TGG | 0.658297 | 5_3:-12892121 | Msa0799620:CDS |
| AGAGGAAACAAAGGTTTGTG+CGG | 0.658304 | 5_3:-12893347 | Msa0799620:CDS |
| CCGGTTGCTGAATCGGTGGG+TGG | 0.661540 | 5_3:+12895071 | None:intergenic |
| TCCGGTTGTGAAGAAGCCGA+AGG | 0.661858 | 5_3:-12894903 | Msa0799620:CDS |
| TAATCAGCAAACTATATCTG+GGG | 0.665489 | 5_3:-12891668 | Msa0799620:CDS |
| AGGTAGTGCAAGGTGTACGT+CGG | 0.666824 | 5_3:+12892173 | None:intergenic |
| TGTGTAGTCACACTAGGAGA+CGG | 0.667876 | 5_3:+12892285 | None:intergenic |
| GTTTGGGACAGTGTCTTGGA+CGG | 0.669837 | 5_3:-12892894 | Msa0799620:CDS |
| TTAGCTGAGAAATGGAAATG+TGG | 0.673734 | 5_3:-12894643 | Msa0799620:intron |
| ATGGTCTTAGCAATGCAACA+AGG | 0.681952 | 5_3:-12892425 | Msa0799620:CDS |
| TCATCTCGTTTAACACACGC+CGG | 0.683606 | 5_3:+12894679 | None:intergenic |
| GGAGGAGAAACACAGTGTCA+CGG | 0.684082 | 5_3:-12891878 | Msa0799620:CDS |
| TGTGAAATTTCTTGTCATGG+TGG | 0.684535 | 5_3:-12892198 | Msa0799620:CDS |
| CCGACATTGAAGAGAATCCG+GGG | 0.685264 | 5_3:-12891996 | Msa0799620:CDS |
| GGGTAAATGTAAATCACCTG+AGG | 0.697059 | 5_3:+12891741 | None:intergenic |
| ACATGAACAGTACCTTTCGG+CGG | 0.743025 | 5_3:+12894932 | None:intergenic |
| AATCTGTTAAGAGCAACGGA+GGG | 0.752755 | 5_3:-12892314 | Msa0799620:CDS |
| CAAACTCATCAATTTCCATG+GGG | 0.762481 | 5_3:-12891440 | Msa0799620:CDS |
| GTGTCGGTGAGTAAGAAACG+CGG | 0.785883 | 5_3:-12894959 | Msa0799620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAATAAACGATTTTAT+CGG | + | chr5_3:12891201-12891220 | None:intergenic | 10.0% |
| !!! | AAATTTGATCTTTTTTTTTT+TGG | - | chr5_3:12891577-12891596 | Msa0799620:intron | 10.0% |
| !! | TTAAAGAAAAAATAATACTT+TGG | + | chr5_3:12894741-12894760 | None:intergenic | 10.0% |
| !!! | AATGTTAATCTTTCTATTTT+AGG | - | chr5_3:12891224-12891243 | Msa0799620:intron | 15.0% |
| !!! | ATGTTAATCTTTCTATTTTA+GGG | - | chr5_3:12891225-12891244 | Msa0799620:intron | 15.0% |
| !! | ATATAATTGTATGTAATCAA+TGG | - | chr5_3:12894344-12894363 | Msa0799620:intron | 15.0% |
| !! | TATAATTGTATGTAATCAAT+GGG | - | chr5_3:12894345-12894364 | Msa0799620:intron | 15.0% |
| !! | AAATTATTCTAATCAACTAT+TGG | + | chr5_3:12894775-12894794 | None:intergenic | 15.0% |
| !! | AATAGTTGATTAGAATAATT+TGG | - | chr5_3:12894774-12894793 | Msa0799620:intron | 15.0% |
| !!! | TCATTTTTTTTTGAAACAAA+GGG | - | chr5_3:12894866-12894885 | Msa0799620:CDS | 15.0% |
| !! | AATTTACAATTCATTGAATT+TGG | - | chr5_3:12894914-12894933 | Msa0799620:CDS | 15.0% |
| !!! | TTTTATTTAAATGAGAGAAA+CGG | - | chr5_3:12895168-12895187 | Msa0799620:five_prime_UTR | 15.0% |
| !!! | TGTTAATCTTTCTATTTTAG+GGG | - | chr5_3:12891226-12891245 | Msa0799620:intron | 20.0% |
| !!! | TGTTATTTTTGTGTTTATTG+TGG | - | chr5_3:12891329-12891348 | Msa0799620:intron | 20.0% |
| !!! | AATTGAACTTAATTTTGAGT+TGG | - | chr5_3:12891408-12891427 | Msa0799620:intron | 20.0% |
| !!! | ACTTATTTTAAATGACGTTT+CGG | + | chr5_3:12891512-12891531 | None:intergenic | 20.0% |
| !! | CTCTATATTTGAAAGTAAAA+TGG | - | chr5_3:12891722-12891741 | Msa0799620:CDS | 20.0% |
| !! | AAAAACGTGAATGAAAAATT+AGG | - | chr5_3:12892103-12892122 | Msa0799620:CDS | 20.0% |
| !! | AAAACGTGAATGAAAAATTA+GGG | - | chr5_3:12892104-12892123 | Msa0799620:CDS | 20.0% |
| !!! | ATTTTTATTTGAGTGTCTAA+TGG | - | chr5_3:12892430-12892449 | Msa0799620:CDS | 20.0% |
| !!! | TTAAGCTTTTCATGTATAAA+GGG | + | chr5_3:12892731-12892750 | None:intergenic | 20.0% |
| !!! | ATTAAGCTTTTCATGTATAA+AGG | + | chr5_3:12892732-12892751 | None:intergenic | 20.0% |
| !! | TTTATACATGAAAAGCTTAA+TGG | - | chr5_3:12892731-12892750 | Msa0799620:CDS | 20.0% |
| !!! | TTTATTTTCCAATGTAACAT+TGG | + | chr5_3:12893489-12893508 | None:intergenic | 20.0% |
| !!! | AGTTTAAATTTAGATTTGCT+AGG | - | chr5_3:12894422-12894441 | Msa0799620:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr5_3:12894677-12894696 | None:intergenic | 20.0% |
| !! | GTAACATAGTATTAATTGAA+GGG | + | chr5_3:12894711-12894730 | None:intergenic | 20.0% |
| !! | TGTAACATAGTATTAATTGA+AGG | + | chr5_3:12894712-12894731 | None:intergenic | 20.0% |
| !!! | CTCATTTTTTTTTGAAACAA+AGG | - | chr5_3:12894865-12894884 | Msa0799620:CDS | 20.0% |
| !!! | CTAATAAGTTTTTTGTTTTC+AGG | - | chr5_3:12894946-12894965 | Msa0799620:CDS | 20.0% |
| !! | AAAAGAATGTTGTTATAAAC+AGG | + | chr5_3:12895060-12895079 | None:intergenic | 20.0% |
| !! | ATTATATAGCAAAATAGAGT+AGG | + | chr5_3:12895149-12895168 | None:intergenic | 20.0% |
| ! | ATGAAGTTGAAAAATGAGAA+TGG | + | chr5_3:12890727-12890746 | None:intergenic | 25.0% |
| ! | TTCTACTCATGATTAGAATT+TGG | - | chr5_3:12891480-12891499 | Msa0799620:intron | 25.0% |
| ! | TCTACTCATGATTAGAATTT+GGG | - | chr5_3:12891481-12891500 | Msa0799620:intron | 25.0% |
| !!! | ATGTGATTGTTTTTCTTTTG+TGG | - | chr5_3:12891634-12891653 | Msa0799620:intron | 25.0% |
| !!! | TGTGATTGTTTTTCTTTTGT+GGG | - | chr5_3:12891635-12891654 | Msa0799620:intron | 25.0% |
| !! | GAATTTAGTGTCTTTGTTTA+TGG | - | chr5_3:12891877-12891896 | Msa0799620:CDS | 25.0% |
| ! | TTCCTTGATCTATATGATAT+TGG | - | chr5_3:12891970-12891989 | Msa0799620:CDS | 25.0% |
| ! | TACCAATATCATATAGATCA+AGG | + | chr5_3:12891975-12891994 | None:intergenic | 25.0% |
| ! | AAAAACAGGAATGAAAATGT+AGG | - | chr5_3:12892057-12892076 | Msa0799620:CDS | 25.0% |
| ! | AAAACAGGAATGAAAATGTA+GGG | - | chr5_3:12892058-12892077 | Msa0799620:CDS | 25.0% |
| ! | ATAAAACATGATCTATGCAA+GGG | + | chr5_3:12892209-12892228 | None:intergenic | 25.0% |
| ! | TATAAAACATGATCTATGCA+AGG | + | chr5_3:12892210-12892229 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTGCATTGCCT+AGG | - | chr5_3:12892468-12892487 | Msa0799620:CDS | 25.0% |
| ! | ACTATTTGAATCTACTATAC+AGG | + | chr5_3:12893006-12893025 | None:intergenic | 25.0% |
| ! | AAATAGTCCTATAAACAAGA+AGG | - | chr5_3:12893019-12893038 | Msa0799620:CDS | 25.0% |
| ! | CGAAATGAATACTAATGAAT+CGG | - | chr5_3:12893145-12893164 | Msa0799620:CDS | 25.0% |
| ! | GGAAAATAAAGAAAATAGTC+AGG | - | chr5_3:12893499-12893518 | Msa0799620:intron | 25.0% |
| ! | AATAAAGAAAATAGTCAGGA+TGG | - | chr5_3:12893503-12893522 | Msa0799620:intron | 25.0% |
| ! | TGACAAGAAATTTCACATTT+AGG | + | chr5_3:12893746-12893765 | None:intergenic | 25.0% |
| ! | AAATGTGAAATTTCTTGTCA+TGG | - | chr5_3:12893746-12893765 | Msa0799620:intron | 25.0% |
| ! | TCATGGGAATGATAAAAAAT+TGG | - | chr5_3:12893853-12893872 | Msa0799620:intron | 25.0% |
| ! | GATAAAAAATTGGAAGTGAA+TGG | - | chr5_3:12893863-12893882 | Msa0799620:intron | 25.0% |
| !! | TGATTCAGTTTCAAATCTTT+TGG | - | chr5_3:12894033-12894052 | Msa0799620:intron | 25.0% |
| ! | ATAATCAGCAAACTATATCT+GGG | - | chr5_3:12894278-12894297 | Msa0799620:intron | 25.0% |
| !! | TATATTTTACACAAGACCAA+CGG | + | chr5_3:12894390-12894409 | None:intergenic | 25.0% |
| ! | AAAATAGTCATTAGTGAAGA+AGG | + | chr5_3:12894557-12894576 | None:intergenic | 25.0% |
| !!! | AAACGACACTCATTTTAAAA+CGG | + | chr5_3:12894610-12894629 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTTCAGGTTAACT+TGG | - | chr5_3:12894955-12894974 | Msa0799620:CDS | 25.0% |
| !! | GCTATTTATCTTTAGTCTTT+AGG | - | chr5_3:12894993-12895012 | Msa0799620:CDS | 25.0% |
| ! | TTGCAGAAATTTATAATCAG+CGG | - | chr5_3:12895207-12895226 | Msa0799620:five_prime_UTR | 25.0% |
| ATTTCCATTTCTCAGCTAAA+CGG | + | chr5_3:12891303-12891322 | None:intergenic | 30.0% | |
| !!! | AAGTTTTATTTTGTGCGAAG+TGG | - | chr5_3:12891528-12891547 | Msa0799620:intron | 30.0% |
| CTAAATTCATGCCTAATGAA+GGG | + | chr5_3:12891865-12891884 | None:intergenic | 30.0% | |
| ACTAAATTCATGCCTAATGA+AGG | + | chr5_3:12891866-12891885 | None:intergenic | 30.0% | |
| ATGGAAATTGTTGAAGATCA+AGG | - | chr5_3:12891896-12891915 | Msa0799620:CDS | 30.0% | |
| ! | TTGGTATGTTACTTCATGTT+TGG | - | chr5_3:12891989-12892008 | Msa0799620:CDS | 30.0% |
| GTGTCAAAGATGTACTAATT+TGG | - | chr5_3:12892149-12892168 | Msa0799620:CDS | 30.0% | |
| CAAAGATGTACTAATTTGGA+AGG | - | chr5_3:12892153-12892172 | Msa0799620:CDS | 30.0% | |
| TACAATAGATTTCTCATGCA+TGG | - | chr5_3:12892228-12892247 | Msa0799620:CDS | 30.0% | |
| AAACATGTGGATAAATGTCT+TGG | - | chr5_3:12892271-12892290 | Msa0799620:CDS | 30.0% | |
| ATAAATGTCTTGGATTATGC+AGG | - | chr5_3:12892281-12892300 | Msa0799620:CDS | 30.0% | |
| TGATCAGCTTGTCAAAAATA+GGG | + | chr5_3:12892394-12892413 | None:intergenic | 30.0% | |
| ATCTACTATACAGGAATTCT+CGG | + | chr5_3:12892997-12893016 | None:intergenic | 30.0% | |
| !!! | AAAGTGGTTATTTTGAACGA+AGG | - | chr5_3:12893711-12893730 | Msa0799620:intron | 30.0% |
| !!! | AAGTGGTTATTTTGAACGAA+GGG | - | chr5_3:12893712-12893731 | Msa0799620:intron | 30.0% |
| GTCATTCAAATTCTCATCAA+AGG | + | chr5_3:12893807-12893826 | None:intergenic | 30.0% | |
| ATTGGAAGTGAATGGAAATT+TGG | - | chr5_3:12893871-12893890 | Msa0799620:intron | 30.0% | |
| TTGGAAGTGAATGGAAATTT+GGG | - | chr5_3:12893872-12893891 | Msa0799620:intron | 30.0% | |
| TTGAAACTGAATCATCAACT+AGG | + | chr5_3:12894027-12894046 | None:intergenic | 30.0% | |
| GCTATAACTGATTGTTTACA+AGG | - | chr5_3:12894136-12894155 | Msa0799620:intron | 30.0% | |
| CATAATCAGCAAACTATATC+TGG | - | chr5_3:12894277-12894296 | Msa0799620:intron | 30.0% | |
| TAATCAGCAAACTATATCTG+GGG | - | chr5_3:12894279-12894298 | Msa0799620:intron | 30.0% | |
| ! | ATATTTTACACAAGACCAAC+GGG | + | chr5_3:12894389-12894408 | None:intergenic | 30.0% |
| CTAATCAATCAATTATGTGC+AGG | - | chr5_3:12894458-12894477 | Msa0799620:intron | 30.0% | |
| ! | GATTTTAGACCAACTTGAAT+CGG | - | chr5_3:12895023-12895042 | Msa0799620:CDS | 30.0% |
| ATTAAGTATCCGATTCAAGT+TGG | + | chr5_3:12895035-12895054 | None:intergenic | 30.0% | |
| AGAGAGAAACCCTAGAAATT+GGG | + | chr5_3:12890789-12890808 | None:intergenic | 35.0% | |
| TCCTTCAAATTCACCTTTCA+TGG | - | chr5_3:12890843-12890862 | Msa0799620:three_prime_UTR | 35.0% | |
| TCCATGAAAGGTGAATTTGA+AGG | + | chr5_3:12890847-12890866 | None:intergenic | 35.0% | |
| ! | TGGTGATTTTGTTCCATGAA+AGG | + | chr5_3:12890859-12890878 | None:intergenic | 35.0% |
| TGAACATGAACAGTACCTTT+CGG | + | chr5_3:12891021-12891040 | None:intergenic | 35.0% | |
| TACTGTTCATGTTCATTCTC+CGG | - | chr5_3:12891026-12891045 | Msa0799620:intron | 35.0% | |
| CATACATCTTCTTCATCCTT+CGG | + | chr5_3:12891063-12891082 | None:intergenic | 35.0% | |
| GTATGCTTCATTTGCTTTGA+TGG | - | chr5_3:12891078-12891097 | Msa0799620:intron | 35.0% | |
| CACTTGTTCTATGTGATCAT+CGG | - | chr5_3:12891106-12891125 | Msa0799620:intron | 35.0% | |
| ! | TTTTCCGTTTAGCTGAGAAA+TGG | - | chr5_3:12891296-12891315 | Msa0799620:intron | 35.0% |
| TTAGCTGAGAAATGGAAATG+TGG | - | chr5_3:12891304-12891323 | Msa0799620:intron | 35.0% | |
| TTGCTTGTGTATTTGATGTC+TGG | - | chr5_3:12891827-12891846 | Msa0799620:CDS | 35.0% | |
| TGCTTGTGTATTTGATGTCT+GGG | - | chr5_3:12891828-12891847 | Msa0799620:CDS | 35.0% | |
| AATTGTTGAAGATCAAGGAG+TGG | - | chr5_3:12891901-12891920 | Msa0799620:CDS | 35.0% | |
| CAAGGAAAGAGAGAGAATTA+GGG | + | chr5_3:12891957-12891976 | None:intergenic | 35.0% | |
| TCAAGGAAAGAGAGAGAATT+AGG | + | chr5_3:12891958-12891977 | None:intergenic | 35.0% | |
| ! | ATGTTACTTCATGTTTGGTG+AGG | - | chr5_3:12891994-12892013 | Msa0799620:CDS | 35.0% |
| ! | TGTTACTTCATGTTTGGTGA+GGG | - | chr5_3:12891995-12892014 | Msa0799620:CDS | 35.0% |
| ! | CATTCACGTTTTTGTGATTC+TGG | + | chr5_3:12892096-12892115 | None:intergenic | 35.0% |
| !! | GTGTTTTTGCTTGAAACATG+TGG | - | chr5_3:12892258-12892277 | Msa0799620:CDS | 35.0% |
| GTGATCAGCTTGTCAAAAAT+AGG | + | chr5_3:12892395-12892414 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCATTGCCTAGGT+TGG | - | chr5_3:12892472-12892491 | Msa0799620:CDS | 35.0% |
| ! | TCTGATTTTGTTAGTGTCAG+AGG | - | chr5_3:12892582-12892601 | Msa0799620:CDS | 35.0% |
| GACCATTACCTTAATTCCTT+GGG | + | chr5_3:12892664-12892683 | None:intergenic | 35.0% | |
| AGACCATTACCTTAATTCCT+TGG | + | chr5_3:12892665-12892684 | None:intergenic | 35.0% | |
| ! | GCTTTTCATGTATAAAGGGA+GGG | + | chr5_3:12892727-12892746 | None:intergenic | 35.0% |
| ! | AGCTTTTCATGTATAAAGGG+AGG | + | chr5_3:12892728-12892747 | None:intergenic | 35.0% |
| CGCACTAAAAAAATAGCACA+AGG | + | chr5_3:12892779-12892798 | None:intergenic | 35.0% | |
| !!! | GCTATTTTTTTAGTGCGAAG+TGG | - | chr5_3:12892782-12892801 | Msa0799620:CDS | 35.0% |
| !! | ATTTTGATGATAGAAGCAGC+TGG | - | chr5_3:12892805-12892824 | Msa0799620:CDS | 35.0% |
| !! | TTTTGATGATAGAAGCAGCT+GGG | - | chr5_3:12892806-12892825 | Msa0799620:CDS | 35.0% |
| !! | AGTATCTTTTCAAGGTGTAC+TGG | - | chr5_3:12892829-12892848 | Msa0799620:CDS | 35.0% |
| CATCATCTTAAAGTTGACAC+TGG | - | chr5_3:12892963-12892982 | Msa0799620:CDS | 35.0% | |
| TCCTATAAACAAGAAGGCTA+AGG | - | chr5_3:12893025-12893044 | Msa0799620:CDS | 35.0% | |
| CCTATAAACAAGAAGGCTAA+GGG | - | chr5_3:12893026-12893045 | Msa0799620:CDS | 35.0% | |
| ! | TGTATTCACATTTAGCTCAC+AGG | + | chr5_3:12893111-12893130 | None:intergenic | 35.0% |
| AATGAATCGGCAATCAATGA+TGG | - | chr5_3:12893158-12893177 | Msa0799620:intron | 35.0% | |
| AACTGTGAACAACAGTCTTT+GGG | - | chr5_3:12893461-12893480 | Msa0799620:intron | 35.0% | |
| AGATTCATCTGTACCATTAG+GGG | + | chr5_3:12893618-12893637 | None:intergenic | 35.0% | |
| CAGATTCATCTGTACCATTA+GGG | + | chr5_3:12893619-12893638 | None:intergenic | 35.0% | |
| ACAGATTCATCTGTACCATT+AGG | + | chr5_3:12893620-12893639 | None:intergenic | 35.0% | |
| GATGAATCTGTTAAGAGCAA+CGG | - | chr5_3:12893629-12893648 | Msa0799620:intron | 35.0% | |
| TGTGAAATTTCTTGTCATGG+TGG | - | chr5_3:12893749-12893768 | Msa0799620:intron | 35.0% | |
| ! | AATGGAAATTTGGGTTCCAA+TGG | - | chr5_3:12893881-12893900 | Msa0799620:intron | 35.0% |
| ! | ATGGAAATTTGGGTTCCAAT+GGG | - | chr5_3:12893882-12893901 | Msa0799620:intron | 35.0% |
| ! | AAATCTTTTGGATGCAGTAG+CGG | - | chr5_3:12894045-12894064 | Msa0799620:intron | 35.0% |
| GATATTGATGTGTTCACTGA+TGG | - | chr5_3:12894112-12894131 | Msa0799620:intron | 35.0% | |
| !! | ATACTACCAGATTTTGATGC+AGG | - | chr5_3:12894163-12894182 | Msa0799620:intron | 35.0% |
| TTCAAAAACTCCTGAAGTTG+AGG | - | chr5_3:12894309-12894328 | Msa0799620:intron | 35.0% | |
| ACCAAACTCATCAATTTCCA+TGG | - | chr5_3:12894505-12894524 | Msa0799620:intron | 35.0% | |
| CCAAACTCATCAATTTCCAT+GGG | - | chr5_3:12894506-12894525 | Msa0799620:intron | 35.0% | |
| CAAACTCATCAATTTCCATG+GGG | - | chr5_3:12894507-12894526 | Msa0799620:intron | 35.0% | |
| !!! | GACACTCATTTTAAAACGGA+GGG | + | chr5_3:12894606-12894625 | None:intergenic | 35.0% |
| TTCCTTAATCTGTGTGCAAT+TGG | - | chr5_3:12894831-12894850 | Msa0799620:intron | 35.0% | |
| ! | GTTAACTTGGCAGATTACAT+TGG | - | chr5_3:12894968-12894987 | Msa0799620:CDS | 35.0% |
| GAGAGAAACCCTAGAAATTG+GGG | + | chr5_3:12890788-12890807 | None:intergenic | 40.0% | |
| GAGAGAGAAACCCTAGAAAT+TGG | + | chr5_3:12890790-12890809 | None:intergenic | 40.0% | |
| TGCTTCATTTGCTTTGATGG+TGG | - | chr5_3:12891081-12891100 | Msa0799620:intron | 40.0% | |
| !! | CTATTTTAGGGGTTGTCCTA+AGG | - | chr5_3:12891237-12891256 | Msa0799620:intron | 40.0% |
| AATGGTTCGTGTCTTTGTTC+TGG | - | chr5_3:12891740-12891759 | Msa0799620:CDS | 40.0% | |
| ATGGTTCGTGTCTTTGTTCT+GGG | - | chr5_3:12891741-12891760 | Msa0799620:CDS | 40.0% | |
| GCTTGTGTATTTGATGTCTG+GGG | - | chr5_3:12891829-12891848 | Msa0799620:CDS | 40.0% | |
| CTTGTGTATTTGATGTCTGG+GGG | - | chr5_3:12891830-12891849 | Msa0799620:CDS | 40.0% | |
| TTGTGTATTTGATGTCTGGG+GGG | - | chr5_3:12891831-12891850 | Msa0799620:CDS | 40.0% | |
| GATCCCAAATTCCCAATACT+TGG | + | chr5_3:12892026-12892045 | None:intergenic | 40.0% | |
| ! | TATTGGGAATTTGGGATCCT+TGG | - | chr5_3:12892028-12892047 | Msa0799620:CDS | 40.0% |
| ! | ATTGGGAATTTGGGATCCTT+GGG | - | chr5_3:12892029-12892048 | Msa0799620:CDS | 40.0% |
| CAGCTTGTCAAAAATAGGGA+AGG | + | chr5_3:12892390-12892409 | None:intergenic | 40.0% | |
| TGTCCATATTCCTTGTGCAA+GGG | - | chr5_3:12892543-12892562 | Msa0799620:CDS | 40.0% | |
| ! | TTTTGTACATCCCTTGCACA+AGG | + | chr5_3:12892556-12892575 | None:intergenic | 40.0% |
| GTTAGTGTCAGAGGAAACAA+AGG | - | chr5_3:12892591-12892610 | Msa0799620:CDS | 40.0% | |
| AGAGGAAACAAAGGTTTGTG+CGG | - | chr5_3:12892600-12892619 | Msa0799620:CDS | 40.0% | |
| TGCCCAAGGAATTAAGGTAA+TGG | - | chr5_3:12892659-12892678 | Msa0799620:CDS | 40.0% | |
| TTCATGTATAAAGGGAGGGA+GGG | + | chr5_3:12892723-12892742 | None:intergenic | 40.0% | |
| TTTCATGTATAAAGGGAGGG+AGG | + | chr5_3:12892724-12892743 | None:intergenic | 40.0% | |
| !! | GTGTACTGGTTGTACTTGAA+AGG | - | chr5_3:12892843-12892862 | Msa0799620:CDS | 40.0% |
| TCCTTCGAGCTAAAAATCCT+TGG | - | chr5_3:12892892-12892911 | Msa0799620:CDS | 40.0% | |
| !!! | TCCAAGGATTTTTAGCTCGA+AGG | + | chr5_3:12892896-12892915 | None:intergenic | 40.0% |
| CGAGCTAAAAATCCTTGGAA+AGG | - | chr5_3:12892897-12892916 | Msa0799620:CDS | 40.0% | |
| ! | TTTAAGATGATGACGCTTCC+GGG | + | chr5_3:12892955-12892974 | None:intergenic | 40.0% |
| !! | CTTTAAGATGATGACGCTTC+CGG | + | chr5_3:12892956-12892975 | None:intergenic | 40.0% |
| ! | CTTAAAGTTGACACTGGTTG+TGG | - | chr5_3:12892969-12892988 | Msa0799620:CDS | 40.0% |
| ! | CCCTTAGCCTTCTTGTTTAT+AGG | + | chr5_3:12893029-12893048 | None:intergenic | 40.0% |
| AGAAGGCTAAGGGAAATGTT+TGG | - | chr5_3:12893036-12893055 | Msa0799620:CDS | 40.0% | |
| GAAGGCTAAGGGAAATGTTT+GGG | - | chr5_3:12893037-12893056 | Msa0799620:CDS | 40.0% | |
| ! | AAATGTTTGGGACAGTGTCT+TGG | - | chr5_3:12893049-12893068 | Msa0799620:CDS | 40.0% |
| CACAGCAACGACATACTAAA+AGG | + | chr5_3:12893311-12893330 | None:intergenic | 40.0% | |
| TCTCTCCAGATCTCAGAATA+TGG | - | chr5_3:12893354-12893373 | Msa0799620:CDS | 40.0% | |
| TCCAGATCTCAGAATATGGA+GGG | - | chr5_3:12893358-12893377 | Msa0799620:CDS | 40.0% | |
| ! | GAGCGGCAATGATACATTTT+GGG | + | chr5_3:12893441-12893460 | None:intergenic | 40.0% |
| ! | TGAGCGGCAATGATACATTT+TGG | + | chr5_3:12893442-12893461 | None:intergenic | 40.0% |
| CAACTGTGAACAACAGTCTT+TGG | - | chr5_3:12893460-12893479 | Msa0799620:CDS | 40.0% | |
| TTTGGGAGCCAATGTTACAT+TGG | - | chr5_3:12893478-12893497 | Msa0799620:intron | 40.0% | |
| ! | ATGGTCTTAGCAATGCAACA+AGG | - | chr5_3:12893522-12893541 | Msa0799620:intron | 40.0% |
| ATTCATCTGTACCATTAGGG+GGG | + | chr5_3:12893616-12893635 | None:intergenic | 40.0% | |
| GATTCATCTGTACCATTAGG+GGG | + | chr5_3:12893617-12893636 | None:intergenic | 40.0% | |
| AATCTGTTAAGAGCAACGGA+GGG | - | chr5_3:12893633-12893652 | Msa0799620:intron | 40.0% | |
| CAGATGGGAATATCAGTGAT+GGG | - | chr5_3:12893687-12893706 | Msa0799620:intron | 40.0% | |
| !! | AATATCAGTGATGGGCAAAG+TGG | - | chr5_3:12893695-12893714 | Msa0799620:intron | 40.0% |
| TTCTCATCAAAGGCAGTTGA+AGG | + | chr5_3:12893797-12893816 | None:intergenic | 40.0% | |
| TGACAAACCTTCTGATGAAG+TGG | - | chr5_3:12893823-12893842 | Msa0799620:intron | 40.0% | |
| TCACTTTGCCCACTATTACT+CGG | + | chr5_3:12893920-12893939 | None:intergenic | 40.0% | |
| ATCCGACATTGAAGAGAATC+CGG | - | chr5_3:12893949-12893968 | Msa0799620:intron | 40.0% | |
| CACATCAATATCCCACTCTT+CGG | + | chr5_3:12894104-12894123 | None:intergenic | 40.0% | |
| CCTTTACCTGCATCAAAATC+TGG | + | chr5_3:12894172-12894191 | None:intergenic | 40.0% | |
| !! | CCAGATTTTGATGCAGGTAA+AGG | - | chr5_3:12894169-12894188 | Msa0799620:intron | 40.0% |
| GGGTAAATGTAAATCACCTG+AGG | + | chr5_3:12894209-12894228 | None:intergenic | 40.0% | |
| !! | TTTGCTACAGTGGATTGAGA+GGG | + | chr5_3:12894229-12894248 | None:intergenic | 40.0% |
| !! | ATTTGCTACAGTGGATTGAG+AGG | + | chr5_3:12894230-12894249 | None:intergenic | 40.0% |
| ! | ATTTTACGCACCTCAACTTC+AGG | + | chr5_3:12894322-12894341 | None:intergenic | 40.0% |
| ! | TTTGGTTCCAGCAAATACCT+GGG | + | chr5_3:12894491-12894510 | None:intergenic | 40.0% |
| CCCATGGAAATTGATGAGTT+TGG | + | chr5_3:12894509-12894528 | None:intergenic | 40.0% | |
| TAGAGAAACAACTTACGAGG+TGG | + | chr5_3:12894534-12894553 | None:intergenic | 40.0% | |
| AGGTAGAGAAACAACTTACG+AGG | + | chr5_3:12894537-12894556 | None:intergenic | 40.0% | |
| !!! | CGACACTCATTTTAAAACGG+AGG | + | chr5_3:12894607-12894626 | None:intergenic | 40.0% |
| AGCCAATTGCACACAGATTA+AGG | + | chr5_3:12894836-12894855 | None:intergenic | 40.0% | |
| ! | AAGGGAGTATAATCGTTGCT+AGG | - | chr5_3:12894884-12894903 | Msa0799620:CDS | 40.0% |
| !! | GGTTTTGATCTGAGTGGACA+CGG | + | chr5_3:12890757-12890776 | None:intergenic | 45.0% |
| ! | GGAATTACCGGTTGCTGAAT+CGG | + | chr5_3:12890886-12890905 | None:intergenic | 45.0% |
| GGAATTGGAGGTGGAATTAC+CGG | + | chr5_3:12890898-12890917 | None:intergenic | 45.0% | |
| GGTAATTCCACCTCCAATTC+CGG | - | chr5_3:12890897-12890916 | Msa0799620:three_prime_UTR | 45.0% | |
| CCTGAACATACTCCGATGAT+CGG | - | chr5_3:12890943-12890962 | Msa0799620:three_prime_UTR | 45.0% | |
| ACATGAACAGTACCTTTCGG+CGG | + | chr5_3:12891018-12891037 | None:intergenic | 45.0% | |
| TTGTCCTAAGGCGTATCATC+CGG | - | chr5_3:12891249-12891268 | Msa0799620:intron | 45.0% | |
| TCATCTCGTTTAACACACGC+CGG | + | chr5_3:12891271-12891290 | None:intergenic | 45.0% | |
| TGGTTCGTGTCTTTGTTCTG+GGG | - | chr5_3:12891742-12891761 | Msa0799620:CDS | 45.0% | |
| ! | ATTGTCGCTGGTTGAGAAGA+TGG | - | chr5_3:12891784-12891803 | Msa0799620:CDS | 45.0% |
| CCAAATTCCCAATACTTGGC+CGG | + | chr5_3:12892022-12892041 | None:intergenic | 45.0% | |
| !! | CGGCCAAGTATTGGGAATTT+GGG | - | chr5_3:12892020-12892039 | Msa0799620:CDS | 45.0% |
| ! | TTGGGAATTTGGGATCCTTG+GGG | - | chr5_3:12892030-12892049 | Msa0799620:CDS | 45.0% |
| ! | ATCCTTGGGGGTACAAAAAC+AGG | - | chr5_3:12892043-12892062 | Msa0799620:CDS | 45.0% |
| !!! | TTCCTGTTTTTGTACCCCCA+AGG | + | chr5_3:12892048-12892067 | None:intergenic | 45.0% |
| TGGCATCTATGTAGCGATTG+TGG | - | chr5_3:12892492-12892511 | Msa0799620:CDS | 45.0% | |
| GACAGGTATAGCACATGTAG+TGG | + | chr5_3:12892527-12892546 | None:intergenic | 45.0% | |
| CTTGCACAAGGAATATGGAC+AGG | + | chr5_3:12892544-12892563 | None:intergenic | 45.0% | |
| CTGTCCATATTCCTTGTGCA+AGG | - | chr5_3:12892542-12892561 | Msa0799620:CDS | 45.0% | |
| CATCCCTTGCACAAGGAATA+TGG | + | chr5_3:12892549-12892568 | None:intergenic | 45.0% | |
| GAACAGTGCCCAAGGAATTA+AGG | - | chr5_3:12892653-12892672 | Msa0799620:CDS | 45.0% | |
| TCATGTATAAAGGGAGGGAG+GGG | + | chr5_3:12892722-12892741 | None:intergenic | 45.0% | |
| !!! | CAGCTGGGAGTATCTTTTCA+AGG | - | chr5_3:12892821-12892840 | Msa0799620:CDS | 45.0% |
| ! | TTAAGATGATGACGCTTCCG+GGG | + | chr5_3:12892954-12892973 | None:intergenic | 45.0% |
| ! | CACATTTAGCTCACAGGTAG+TGG | + | chr5_3:12893105-12893124 | None:intergenic | 45.0% |
| !! | ATCAATGATGGCACTGATGC+AGG | - | chr5_3:12893170-12893189 | Msa0799620:intron | 45.0% |
| !! | TCAATGATGGCACTGATGCA+GGG | - | chr5_3:12893171-12893190 | Msa0799620:intron | 45.0% |
| GTTTCAAGACTAGGAGAGTC+TGG | - | chr5_3:12893194-12893213 | Msa0799620:intron | 45.0% | |
| TCATCGTTGCTTCACTCTAC+AGG | - | chr5_3:12893233-12893252 | Msa0799620:intron | 45.0% | |
| CATCGTTGCTTCACTCTACA+GGG | - | chr5_3:12893234-12893253 | Msa0799620:intron | 45.0% | |
| TGGCATTATCAGGATCCAAC+TGG | - | chr5_3:12893272-12893291 | Msa0799620:intron | 45.0% | |
| GGCATTATCAGGATCCAACT+GGG | - | chr5_3:12893273-12893292 | Msa0799620:intron | 45.0% | |
| TTATCAGGATCCAACTGGGA+AGG | - | chr5_3:12893277-12893296 | Msa0799620:intron | 45.0% | |
| ! | TCGTTGCTGTGCAAGTTGAA+AGG | - | chr5_3:12893320-12893339 | Msa0799620:CDS | 45.0% |
| CTCCAGATCTCAGAATATGG+AGG | - | chr5_3:12893357-12893376 | Msa0799620:CDS | 45.0% | |
| !! | ACCCTCCATATTCTGAGATC+TGG | + | chr5_3:12893362-12893381 | None:intergenic | 45.0% |
| GACTGTTGTTCACAGTTGAG+CGG | + | chr5_3:12893458-12893477 | None:intergenic | 45.0% | |
| TTCATCTGTACCATTAGGGG+GGG | + | chr5_3:12893615-12893634 | None:intergenic | 45.0% | |
| GAATCTGTTAAGAGCAACGG+AGG | - | chr5_3:12893632-12893651 | Msa0799620:intron | 45.0% | |
| TGTGTAGTCACACTAGGAGA+CGG | + | chr5_3:12893665-12893684 | None:intergenic | 45.0% | |
| TCTGCTTGTGTAGTCACACT+AGG | + | chr5_3:12893671-12893690 | None:intergenic | 45.0% | |
| AGTGTGACTACACAAGCAGA+TGG | - | chr5_3:12893671-12893690 | Msa0799620:intron | 45.0% | |
| GTGTGACTACACAAGCAGAT+GGG | - | chr5_3:12893672-12893691 | Msa0799620:intron | 45.0% | |
| GCAGATGGGAATATCAGTGA+TGG | - | chr5_3:12893686-12893705 | Msa0799620:intron | 45.0% | |
| CAAACCTTCTGATGAAGTGG+TGG | - | chr5_3:12893826-12893845 | Msa0799620:intron | 45.0% | |
| ! | ATGAAGTGGTGGAAGGTCAT+GGG | - | chr5_3:12893837-12893856 | Msa0799620:intron | 45.0% |
| TCCGACATTGAAGAGAATCC+GGG | - | chr5_3:12893950-12893969 | Msa0799620:intron | 45.0% | |
| TTCTGGTCAGAACTGGATGA+TGG | - | chr5_3:12893979-12893998 | Msa0799620:intron | 45.0% | |
| ATCAATATCCCACTCTTCGG+CGG | + | chr5_3:12894101-12894120 | None:intergenic | 45.0% | |
| ! | TGCACATCTGCTTGCTGAAA+CGG | + | chr5_3:12894259-12894278 | None:intergenic | 45.0% |
| TTTACACAAGACCAACGGGT+GGG | + | chr5_3:12894385-12894404 | None:intergenic | 45.0% | |
| ! | TTTTACACAAGACCAACGGG+TGG | + | chr5_3:12894386-12894405 | None:intergenic | 45.0% |
| TTCCAGCAAATACCTGGGAA+AGG | + | chr5_3:12894486-12894505 | None:intergenic | 45.0% | |
| ! | GTTTGGTTCCAGCAAATACC+TGG | + | chr5_3:12894492-12894511 | None:intergenic | 45.0% |
| CATTACTTCCTCGACAGTGA+AGG | + | chr5_3:12895105-12895124 | None:intergenic | 45.0% | |
| CTTCACTGTCGAGGAAGTAA+TGG | - | chr5_3:12895103-12895122 | Msa0799620:exon | 45.0% | |
| AACCCTAGAAATTGGGGACG+CGG | + | chr5_3:12890782-12890801 | None:intergenic | 50.0% | |
| ! | TTACCGGTTGCTGAATCGGT+GGG | + | chr5_3:12890882-12890901 | None:intergenic | 50.0% |
| ! | ATTACCGGTTGCTGAATCGG+TGG | + | chr5_3:12890883-12890902 | None:intergenic | 50.0% |
| GTAAATTCTCCTCCGGTGAC+CGG | + | chr5_3:12890919-12890938 | None:intergenic | 50.0% | |
| GGTCACCGGAGGAGAATTTA+CGG | - | chr5_3:12890918-12890937 | Msa0799620:three_prime_UTR | 50.0% | |
| GTCACCGGAGGAGAATTTAC+GGG | - | chr5_3:12890919-12890938 | Msa0799620:three_prime_UTR | 50.0% | |
| AGGACCCGTAAATTCTCCTC+CGG | + | chr5_3:12890926-12890945 | None:intergenic | 50.0% | |
| CCGATCATCGGAGTATGTTC+AGG | + | chr5_3:12890946-12890965 | None:intergenic | 50.0% | |
| !! | GCAGCGTTGATTCCGATCAT+CGG | + | chr5_3:12890958-12890977 | None:intergenic | 50.0% |
| ! | GTGTCGGTGAGTAAGAAACG+CGG | - | chr5_3:12890988-12891007 | Msa0799620:intron | 50.0% |
| TCCTTCGGCTTCTTCACAAC+CGG | + | chr5_3:12891048-12891067 | None:intergenic | 50.0% | |
| GGTTCGTGTCTTTGTTCTGG+GGG | - | chr5_3:12891743-12891762 | Msa0799620:CDS | 50.0% | |
| TCAACCAGCGACAATTTCGC+CGG | + | chr5_3:12891779-12891798 | None:intergenic | 50.0% | |
| TATTTGATGTCTGGGGGGCT+TGG | - | chr5_3:12891836-12891855 | Msa0799620:CDS | 50.0% | |
| ! | GGGCTTGGTTTCCCTTCATT+AGG | - | chr5_3:12891851-12891870 | Msa0799620:CDS | 50.0% |
| AAGGAGTGGCGCTTGTAACT+GGG | - | chr5_3:12891915-12891934 | Msa0799620:CDS | 50.0% | |
| ! | CTTCATGTTTGGTGAGGGTC+CGG | - | chr5_3:12892000-12892019 | Msa0799620:CDS | 50.0% |
| !! | CCGGCCAAGTATTGGGAATT+TGG | - | chr5_3:12892019-12892038 | Msa0799620:CDS | 50.0% |
| ! | TGGGAATTTGGGATCCTTGG+GGG | - | chr5_3:12892031-12892050 | Msa0799620:CDS | 50.0% |
| CGCTACATAGATGCCAACCT+AGG | + | chr5_3:12892488-12892507 | None:intergenic | 50.0% | |
| GTTGCAAGGTTCAAACTCCC+CGG | - | chr5_3:12892934-12892953 | Msa0799620:CDS | 50.0% | |
| ! | GTTTGGGACAGTGTCTTGGA+CGG | - | chr5_3:12893053-12893072 | Msa0799620:CDS | 50.0% |
| !! | CAATGATGGCACTGATGCAG+GGG | - | chr5_3:12893172-12893191 | Msa0799620:intron | 50.0% |
| GATGCAGGGGTTTCAAGACT+AGG | - | chr5_3:12893185-12893204 | Msa0799620:intron | 50.0% | |
| GTTGCTTCACTCTACAGGGA+TGG | - | chr5_3:12893238-12893257 | Msa0799620:intron | 50.0% | |
| ACAGCCAGTCTGGCATTATC+AGG | - | chr5_3:12893262-12893281 | Msa0799620:intron | 50.0% | |
| ! | GGATCCTGATAATGCCAGAC+TGG | + | chr5_3:12893269-12893288 | None:intergenic | 50.0% |
| GATCCAACTGGGAAGGTTCA+TGG | - | chr5_3:12893284-12893303 | Msa0799620:intron | 50.0% | |
| CAAGCAGAGCGAGGAAGAAA+AGG | - | chr5_3:12893574-12893593 | Msa0799620:intron | 50.0% | |
| CAGAGCGAGGAAGAAAAGGT+GGG | - | chr5_3:12893578-12893597 | Msa0799620:intron | 50.0% | |
| GATACTTGTACCCCCCCTAA+TGG | - | chr5_3:12893602-12893621 | Msa0799620:intron | 50.0% | |
| AGGTAGTGCAAGGTGTACGT+CGG | + | chr5_3:12893777-12893796 | None:intergenic | 50.0% | |
| AGGCAGTTGAAGGTAGTGCA+AGG | + | chr5_3:12893787-12893806 | None:intergenic | 50.0% | |
| CCTTCCACCACTTCATCAGA+AGG | + | chr5_3:12893833-12893852 | None:intergenic | 50.0% | |
| ! | CCTTCTGATGAAGTGGTGGA+AGG | - | chr5_3:12893830-12893849 | Msa0799620:intron | 50.0% |
| ! | GATGAAGTGGTGGAAGGTCA+TGG | - | chr5_3:12893836-12893855 | Msa0799620:intron | 50.0% |
| GGTTCCAATGGGTCTTCTGA+GGG | - | chr5_3:12893893-12893912 | Msa0799620:intron | 50.0% | |
| TCTGAGGGTCCGAGTAATAG+TGG | - | chr5_3:12893908-12893927 | Msa0799620:intron | 50.0% | |
| CTGAGGGTCCGAGTAATAGT+GGG | - | chr5_3:12893909-12893928 | Msa0799620:intron | 50.0% | |
| CCCCGGATTCTCTTCAATGT+CGG | + | chr5_3:12893954-12893973 | None:intergenic | 50.0% | |
| CCGACATTGAAGAGAATCCG+GGG | - | chr5_3:12893951-12893970 | Msa0799620:intron | 50.0% | |
| TTCTGACCAGAAGATTGCCC+CGG | + | chr5_3:12893971-12893990 | None:intergenic | 50.0% | |
| GGCAATCTTCTGGTCAGAAC+TGG | - | chr5_3:12893972-12893991 | Msa0799620:intron | 50.0% | |
| ! | TGGATGATGGCAGCACTCTT+TGG | - | chr5_3:12893992-12894011 | Msa0799620:intron | 50.0% |
| ! | TCTTTTGGATGCAGTAGCGG+CGG | - | chr5_3:12894048-12894067 | Msa0799620:intron | 50.0% |
| GGAGGAGAAACACAGTGTCA+CGG | - | chr5_3:12894069-12894088 | Msa0799620:intron | 50.0% | |
| ! | CGGTTGCTCATTTGCTACAG+TGG | + | chr5_3:12894239-12894258 | None:intergenic | 50.0% |
| CTCCTTTCCCAGGTATTTGC+TGG | - | chr5_3:12894481-12894500 | Msa0799620:intron | 50.0% | |
| ACTTCCTCGACAGTGAAGGA+AGG | + | chr5_3:12895101-12895120 | None:intergenic | 50.0% | |
| !! | GCGGTGGGTTTTGATCTGAG+TGG | + | chr5_3:12890763-12890782 | None:intergenic | 55.0% |
| CTAGAAATTGGGGACGCGGT+GGG | + | chr5_3:12890778-12890797 | None:intergenic | 55.0% | |
| CACCGCGTCCCCAATTTCTA+GGG | - | chr5_3:12890777-12890796 | Msa0799620:three_prime_UTR | 55.0% | |
| GGAATCAACGCTGCTGATGC+TGG | - | chr5_3:12890964-12890983 | Msa0799620:three_prime_UTR | 55.0% | |
| GAACAGTACCTTTCGGCGGA+CGG | + | chr5_3:12891014-12891033 | None:intergenic | 55.0% | |
| TCCGGTTGTGAAGAAGCCGA+AGG | - | chr5_3:12891044-12891063 | Msa0799620:intron | 55.0% | |
| ! | TTCTGGGGGCTGAACTGAAC+CGG | - | chr5_3:12891757-12891776 | Msa0799620:CDS | 55.0% |
| TGAACCGGCGAAATTGTCGC+TGG | - | chr5_3:12891772-12891791 | Msa0799620:CDS | 55.0% | |
| CAAGGAGTGGCGCTTGTAAC+TGG | - | chr5_3:12891914-12891933 | Msa0799620:CDS | 55.0% | |
| AGGAGTGGCGCTTGTAACTG+GGG | - | chr5_3:12891916-12891935 | Msa0799620:CDS | 55.0% | |
| TGAGGGTCCGGCCAAGTATT+GGG | - | chr5_3:12892012-12892031 | Msa0799620:CDS | 55.0% | |
| GTTTGTGCGGAGCATGCTTG+AGG | - | chr5_3:12892613-12892632 | Msa0799620:CDS | 55.0% | |
| CTGATCGAGAACAGTGCCCA+AGG | - | chr5_3:12892645-12892664 | Msa0799620:CDS | 55.0% | |
| GCACGAACAGCACCTTTCCA+AGG | + | chr5_3:12892912-12892931 | None:intergenic | 55.0% | |
| TGCTGTTCGTGCGAGTTGCA+AGG | - | chr5_3:12892920-12892939 | Msa0799620:CDS | 55.0% | |
| GACAGTGTCTTGGACGGTGT+TGG | - | chr5_3:12893059-12893078 | Msa0799620:CDS | 55.0% | |
| ! | AGTGTCTTGGACGGTGTTGG+AGG | - | chr5_3:12893062-12893081 | Msa0799620:CDS | 55.0% |
| GGACCATGAACCTTCCCAGT+TGG | + | chr5_3:12893290-12893309 | None:intergenic | 55.0% | |
| CCTCGCTCTGCTTGACAATC+TGG | + | chr5_3:12893568-12893587 | None:intergenic | 55.0% | |
| CCAGATTGTCAAGCAGAGCG+AGG | - | chr5_3:12893565-12893584 | Msa0799620:intron | 55.0% | |
| GCAGAGCGAGGAAGAAAAGG+TGG | - | chr5_3:12893577-12893596 | Msa0799620:intron | 55.0% | |
| GGTAGTGCAAGGTGTACGTC+GGG | + | chr5_3:12893776-12893795 | None:intergenic | 55.0% | |
| GGGTTCCAATGGGTCTTCTG+AGG | - | chr5_3:12893892-12893911 | Msa0799620:intron | 55.0% | |
| GAGAATCCGGGGCAATCTTC+TGG | - | chr5_3:12893962-12893981 | Msa0799620:intron | 55.0% | |
| ATATCCCACTCTTCGGCGGA+AGG | + | chr5_3:12894097-12894116 | None:intergenic | 55.0% | |
| CTGAAAACCATCCCACCCGT+TGG | - | chr5_3:12894371-12894390 | Msa0799620:intron | 55.0% | |
| TATGTGCAGGCTCCTTTCCC+AGG | - | chr5_3:12894471-12894490 | Msa0799620:intron | 55.0% | |
| AACTTACGAGGTGGACCCCA+TGG | + | chr5_3:12894525-12894544 | None:intergenic | 55.0% | |
| CGACAGTGAAGGAAGGTGAG+AGG | + | chr5_3:12895094-12895113 | None:intergenic | 55.0% | |
| CTCACCTTCCTTCACTGTCG+AGG | - | chr5_3:12895094-12895113 | Msa0799620:exon | 55.0% | |
| CCTAGAAATTGGGGACGCGG+TGG | + | chr5_3:12890779-12890798 | None:intergenic | 60.0% | |
| CCACCGCGTCCCCAATTTCT+AGG | - | chr5_3:12890776-12890795 | Msa0799620:three_prime_UTR | 60.0% | |
| !! | CCACCCACCGATTCAGCAAC+CGG | - | chr5_3:12890876-12890895 | Msa0799620:three_prime_UTR | 60.0% |
| CCACCTCCAATTCCGGTCAC+CGG | - | chr5_3:12890904-12890923 | Msa0799620:three_prime_UTR | 60.0% | |
| TCTCCTCCGGTGACCGGAAT+TGG | + | chr5_3:12890913-12890932 | None:intergenic | 60.0% | |
| CACGCCGGATGATACGCCTT+AGG | + | chr5_3:12891256-12891275 | None:intergenic | 60.0% | |
| GGAGTGGCGCTTGTAACTGG+GGG | - | chr5_3:12891917-12891936 | Msa0799620:CDS | 60.0% | |
| GCGCTTGTAACTGGGGGAGT+GGG | - | chr5_3:12891923-12891942 | Msa0799620:CDS | 60.0% | |
| CGCTTGTAACTGGGGGAGTG+GGG | - | chr5_3:12891924-12891943 | Msa0799620:CDS | 60.0% | |
| GCTTGTAACTGGGGGAGTGG+GGG | - | chr5_3:12891925-12891944 | Msa0799620:CDS | 60.0% | |
| GTGAGGGTCCGGCCAAGTAT+TGG | - | chr5_3:12892011-12892030 | Msa0799620:CDS | 60.0% | |
| CAGGGATGGAACAGCCAGTC+TGG | - | chr5_3:12893252-12893271 | Msa0799620:intron | 60.0% | |
| CGGACCCTCAGAAGACCCAT+TGG | + | chr5_3:12893900-12893919 | None:intergenic | 60.0% | |
| TTTGGATGCAGTAGCGGCGG+AGG | - | chr5_3:12894051-12894070 | Msa0799620:intron | 60.0% | |
| GGAACCTTCCGCCGAAGAGT+GGG | - | chr5_3:12894090-12894109 | Msa0799620:intron | 60.0% | |
| ! | GGTGATGCTCTGAGCTCCTC+AGG | - | chr5_3:12894190-12894209 | Msa0799620:intron | 60.0% |
| CACAAGACCAACGGGTGGGA+TGG | + | chr5_3:12894381-12894400 | None:intergenic | 60.0% | |
| CCGGTTGCTGAATCGGTGGG+TGG | + | chr5_3:12890879-12890898 | None:intergenic | 65.0% | |
| CCGGTGACCGGAATTGGAGG+TGG | + | chr5_3:12890907-12890926 | None:intergenic | 65.0% | |
| CCTCCGGTGACCGGAATTGG+AGG | + | chr5_3:12890910-12890929 | None:intergenic | 65.0% | |
| CCTCCAATTCCGGTCACCGG+AGG | - | chr5_3:12890907-12890926 | Msa0799620:three_prime_UTR | 65.0% | |
| CGCTGCTGATGCTGGCGTGT+CGG | - | chr5_3:12890972-12890991 | Msa0799620:three_prime_UTR | 65.0% | |
| GGCGCTTGTAACTGGGGGAG+TGG | - | chr5_3:12891922-12891941 | Msa0799620:CDS | 65.0% | |
| CGGAACCTTCCGCCGAAGAG+TGG | - | chr5_3:12894089-12894108 | Msa0799620:intron | 65.0% | |
| AAACGCGGCCGTCCGCCGAA+AGG | - | chr5_3:12891003-12891022 | Msa0799620:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 12890722 | 12895247 | 12890722 | ID=Msa0799620;Name=Msa0799620 |
| chr5_3 | mRNA | 12890722 | 12895247 | 12890722 | ID=Msa0799620-mRNA-1;Parent=Msa0799620;Name=Msa0799620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=140|1|1|1|0.4|0.66|6|275|709 |
| chr5_3 | exon | 12890722 | 12891001 | 12890722 | ID=Msa0799620-mRNA-1:exon:5343;Parent=Msa0799620-mRNA-1 |
| chr5_3 | exon | 12891432 | 12891489 | 12891432 | ID=Msa0799620-mRNA-1:exon:5342;Parent=Msa0799620-mRNA-1 |
| chr5_3 | exon | 12891639 | 12893174 | 12891639 | ID=Msa0799620-mRNA-1:exon:5341;Parent=Msa0799620-mRNA-1 |
| chr5_3 | exon | 12893295 | 12893479 | 12893295 | ID=Msa0799620-mRNA-1:exon:5340;Parent=Msa0799620-mRNA-1 |
| chr5_3 | exon | 12894644 | 12894723 | 12894644 | ID=Msa0799620-mRNA-1:exon:5339;Parent=Msa0799620-mRNA-1 |
| chr5_3 | exon | 12894842 | 12895247 | 12894842 | ID=Msa0799620-mRNA-1:exon:5338;Parent=Msa0799620-mRNA-1 |
| chr5_3 | five_prime_UTR | 12895108 | 12895247 | 12895108 | ID=Msa0799620-mRNA-1:five_prime_utr;Parent=Msa0799620-mRNA-1 |
| chr5_3 | CDS | 12894842 | 12895107 | 12894842 | ID=Msa0799620-mRNA-1:cds;Parent=Msa0799620-mRNA-1 |
| chr5_3 | CDS | 12894644 | 12894723 | 12894644 | ID=Msa0799620-mRNA-1:cds;Parent=Msa0799620-mRNA-1 |
| chr5_3 | CDS | 12893295 | 12893479 | 12893295 | ID=Msa0799620-mRNA-1:cds;Parent=Msa0799620-mRNA-1 |
| chr5_3 | CDS | 12891639 | 12893174 | 12891639 | ID=Msa0799620-mRNA-1:cds;Parent=Msa0799620-mRNA-1 |
| chr5_3 | CDS | 12891432 | 12891489 | 12891432 | ID=Msa0799620-mRNA-1:cds;Parent=Msa0799620-mRNA-1 |
| chr5_3 | CDS | 12890997 | 12891001 | 12890997 | ID=Msa0799620-mRNA-1:cds;Parent=Msa0799620-mRNA-1 |
| chr5_3 | three_prime_UTR | 12890722 | 12890996 | 12890722 | ID=Msa0799620-mRNA-1:three_prime_utr;Parent=Msa0799620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
