AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0718120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718120 MtrunA17_Chr5g0407171 96.203 948 36 0 1 948 1 948 0.0 1862
Msa0718120 MtrunA17_Chr8g0370261 71.521 927 261 2 1 926 1 925 0.0 1397
Msa0718120 MtrunA17_Chr3g0144141 56.828 908 371 8 4 909 53 941 0.0 1066
Msa0718120 MtrunA17_Chr2g0322691 52.737 895 403 7 26 907 32 919 0.0 958
Msa0718120 MtrunA17_Chr8g0370281 56.953 827 340 8 94 911 1 820 0.0 946
Msa0718120 MtrunA17_Chr2g0322681 43.584 904 488 10 1 897 10 898 0.0 810
Msa0718120 MtrunA17_Chr3g0136611 34.763 886 535 24 1 863 11 876 2.17e-151 473
Msa0718120 MtrunA17_Chr3g0136621 33.778 900 528 23 1 863 13 881 2.30e-150 470
Msa0718120 MtrunA17_Chr4g0046101 31.243 893 530 26 5 872 19 852 4.36e-117 380
Msa0718120 MtrunA17_Chr2g0283231 28.320 964 587 29 1 929 11 905 2.66e-104 346
Msa0718120 MtrunA17_Chr2g0283241 27.146 862 533 25 27 867 32 819 1.42e-86 298
Msa0718120 MtrunA17_Chr2g0283261 27.483 866 530 26 34 874 41 833 1.93e-85 294
Msa0718120 MtrunA17_Chr5g0424541 27.968 876 530 28 28 862 36 851 1.72e-80 280
Msa0718120 MtrunA17_Chr7g0230091 30.482 643 357 20 242 862 6 580 6.77e-75 259
Msa0718120 MtrunA17_Chr5g0424521 27.979 747 442 22 94 803 3 690 8.68e-71 248
Msa0718120 MtrunA17_Chr7g0230081 26.719 887 522 31 28 862 48 858 7.34e-70 250
Msa0718120 MtrunA17_Chr2g0283251 26.187 779 478 24 27 779 33 740 4.37e-62 226
Msa0718120 MtrunA17_Chr2g0283211 27.891 588 324 18 208 784 32 530 2.86e-55 201
Msa0718120 MtrunA17_Chr6g0467751 32.000 400 250 10 472 851 46 443 8.02e-49 181
Msa0718120 MtrunA17_Chr5g0424621 26.000 550 343 18 28 555 36 543 8.87e-33 134
Msa0718120 MtrunA17_Chr8g0370291 41.593 113 63 2 1 112 1 111 1.06e-21 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718120 AT3G51480.4 57.033 910 377 5 5 913 3 899 0.0 1100
Msa0718120 AT3G51480.1 57.033 910 377 5 5 913 3 899 0.0 1100
Msa0718120 AT1G42540.1 57.096 916 372 8 25 931 22 925 0.0 1073
Msa0718120 AT1G42540.4 57.096 916 372 8 25 931 22 925 0.0 1073
Msa0718120 AT1G42540.2 57.096 916 372 8 25 931 22 925 0.0 1073
Msa0718120 AT3G51480.2 58.465 821 328 4 94 913 1 809 0.0 1020
Msa0718120 AT4G35290.4 52.711 922 410 10 5 914 3 910 0.0 984
Msa0718120 AT4G35290.3 52.711 922 410 10 5 914 3 910 0.0 984
Msa0718120 AT4G35290.1 52.711 922 410 10 5 914 3 910 0.0 984
Msa0718120 AT4G35290.2 52.711 922 410 10 5 914 3 910 0.0 984
Msa0718120 AT4G35290.5 52.711 922 410 10 5 914 3 910 0.0 984
Msa0718120 AT2G17260.1 53.187 910 404 12 5 904 7 904 0.0 954
Msa0718120 AT3G51480.3 57.677 775 315 4 5 779 3 764 0.0 948
Msa0718120 AT1G05200.6 52.440 881 401 6 28 897 57 930 0.0 938
Msa0718120 AT1G05200.2 52.440 881 401 6 28 897 57 930 0.0 938
Msa0718120 AT1G05200.1 52.440 881 401 6 28 897 57 930 0.0 938
Msa0718120 AT2G32390.5 50.171 877 425 5 32 897 48 923 0.0 885
Msa0718120 AT4G35290.6 54.278 783 336 8 5 779 3 771 0.0 857
Msa0718120 AT2G32390.2 50.978 818 390 4 91 897 4 821 0.0 843
Msa0718120 AT2G32390.1 50.796 817 391 4 92 897 49 865 0.0 839
Msa0718120 AT1G05200.7 54.582 753 334 3 28 779 57 802 0.0 839
Msa0718120 AT1G05200.3 54.582 753 334 3 28 779 57 802 0.0 839
Msa0718120 AT2G32400.1 43.581 888 478 10 25 902 24 898 0.0 751
Msa0718120 AT1G42540.3 56.501 623 261 5 25 643 22 638 0.0 731
Msa0718120 AT2G32390.6 51.369 621 301 1 32 652 48 667 0.0 674
Msa0718120 AT1G05200.4 52.657 621 287 2 28 648 57 670 0.0 673
Msa0718120 AT2G32390.4 50.485 618 305 1 32 649 48 664 0.0 661
Msa0718120 AT2G32390.3 50.485 618 305 1 32 649 48 664 0.0 661
Msa0718120 AT1G05200.5 52.224 607 283 2 28 634 57 656 0.0 651
Msa0718120 AT2G32390.7 49.917 603 301 1 32 634 48 649 0.0 637
Msa0718120 AT5G27100.1 33.869 871 513 23 32 873 32 868 2.88e-154 478
Msa0718120 AT5G11180.2 34.109 859 537 16 32 879 36 876 7.28e-153 476
Msa0718120 AT2G29100.2 34.812 879 527 21 32 900 32 874 1.46e-152 475
Msa0718120 AT2G29100.1 34.812 879 527 21 32 900 30 872 1.75e-152 474
Msa0718120 AT5G11210.1 34.112 856 518 19 68 905 14 841 2.23e-151 469
Msa0718120 AT5G11210.5 33.296 892 548 20 32 905 37 899 4.08e-151 470
Msa0718120 AT5G11210.9 34.217 830 502 17 93 905 15 817 4.19e-151 468
Msa0718120 AT2G29110.2 35.223 829 503 16 32 852 34 836 5.37e-151 471
Msa0718120 AT2G29110.1 35.223 829 503 16 32 852 33 835 6.07e-151 471
Msa0718120 AT2G29120.1 32.751 916 558 24 32 933 39 910 2.05e-149 467
Msa0718120 AT2G24720.1 34.837 798 481 17 32 815 32 804 3.24e-145 455
Msa0718120 AT4G31710.1 34.185 822 472 20 30 817 7 793 6.79e-144 451
Msa0718120 AT4G31710.2 34.125 800 470 20 31 817 54 809 4.02e-141 444
Msa0718120 AT5G11210.3 36.261 706 408 15 90 779 20 699 1.03e-139 434
Msa0718120 AT5G11210.2 34.902 765 453 18 32 779 37 773 2.92e-139 436
Msa0718120 AT5G11210.4 34.902 765 453 18 32 779 37 773 2.92e-139 436
Msa0718120 AT5G11210.7 36.131 703 407 15 93 779 15 691 4.51e-139 432
Msa0718120 AT5G11210.6 36.131 703 407 15 93 779 15 691 4.51e-139 432
Msa0718120 AT5G11210.8 36.131 703 407 15 93 779 15 691 4.64e-139 432
Msa0718120 AT5G11210.10 34.902 765 453 18 32 779 37 773 6.35e-139 435
Msa0718120 AT2G24710.1 31.972 857 544 17 43 882 42 876 2.03e-135 428
Msa0718120 AT2G24710.3 31.972 857 544 17 43 882 66 900 2.89e-135 429
Msa0718120 AT2G24710.2 33.110 746 471 13 43 779 66 792 1.33e-127 405
Msa0718120 AT5G11180.1 31.002 858 504 18 32 879 36 815 1.80e-117 381
Msa0718120 AT3G07520.1 27.466 892 552 24 5 864 12 840 6.90e-94 317
Msa0718120 AT5G48400.2 28.521 845 518 24 32 859 40 815 1.32e-92 313
Msa0718120 AT5G48410.1 27.712 848 536 23 32 869 42 822 1.21e-88 302
Msa0718120 AT5G48400.1 29.020 765 459 23 32 779 40 737 1.48e-86 294
Msa0718120 AT5G48410.2 28.496 758 467 22 32 779 42 734 1.10e-83 286
Msa0718120 AT3G04110.1 26.381 887 546 24 6 870 4 805 4.19e-80 277
Msa0718120 AT5G48410.4 26.404 837 512 23 32 858 42 784 1.07e-74 263
Msa0718120 AT3G04110.3 28.343 688 424 18 6 683 4 632 2.80e-73 257
Msa0718120 AT5G48410.3 26.284 837 509 24 32 858 42 780 1.06e-71 254
Msa0718120 AT5G11210.11 34.949 392 241 7 522 905 6 391 6.85e-69 236
Msa0718120 AT3G04110.2 24.915 887 531 24 6 870 4 777 3.77e-67 240

Find 229 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCAGAAGTTGGATATTT+TGG 0.108501 5_1:-12291971 None:intergenic
TGAAAACATGTGAGAAATTT+TGG 0.147502 5_1:-12291875 None:intergenic
TAAGCTTTCAATGCCTTTAA+TGG 0.174089 5_1:-12295547 None:intergenic
GGTTTGGAATGAATTGTTTC+TGG 0.183646 5_1:-12294173 None:intergenic
TGGAACTGTAGTTTGGATTT+TGG 0.188541 5_1:+12294786 Msa0718120:CDS
CTGAGCATCATAATCTTTAT+TGG 0.204930 5_1:-12296457 None:intergenic
TCGCAACACTAAACACTTTC+GGG 0.205231 5_1:-12293590 None:intergenic
TACAAATCCCCAGCCGTTTC+TGG 0.207905 5_1:-12295808 None:intergenic
TCTTTCTTTGTTCCTACTTT+TGG 0.219865 5_1:+12292136 Msa0718120:five_prime_UTR
TTTAAGCATTGTGGAGAAAA+TGG 0.225840 5_1:-12292112 None:intergenic
AACCACATCCTTGGTGTAAA+TGG 0.226841 5_1:-12294736 None:intergenic
TTGTCTAAGTGGTGTAATTA+TGG 0.228054 5_1:+12296532 Msa0718120:exon
GGCTTCTGAGCTGTGTTTCC+AGG 0.230286 5_1:-12294242 None:intergenic
CTTAAATTTATATTCTTCTA+AGG 0.234121 5_1:-12296622 None:intergenic
TTGGTCTTGCCGAGAATATT+TGG 0.235404 5_1:-12292777 None:intergenic
GGCATTGAAAGCTTAGTAAT+TGG 0.241024 5_1:+12295555 Msa0718120:CDS
AAAGAAAGTTTGTTTCTAAA+TGG 0.241296 5_1:+12293766 Msa0718120:CDS
CCATATGGAATAAACTTATA+AGG 0.245835 5_1:-12294428 None:intergenic
ACTTGTTCACTTCCACAATT+AGG 0.259020 5_1:-12296507 None:intergenic
CCTTATAAGTTTATTCCATA+TGG 0.280340 5_1:+12294428 Msa0718120:CDS
GCTCCAATATTTACAATATC+AGG 0.286846 5_1:-12292675 None:intergenic
AACTATTTAATCCAAGATAT+TGG 0.289008 5_1:+12295618 Msa0718120:CDS
CCTGAAGTTATTGCCTGGTT+TGG 0.296388 5_1:-12294189 None:intergenic
CCGATCAAAGAGAAAGAAAA+TGG 0.305618 5_1:+12296386 Msa0718120:CDS
AAGCTTTCAATGCCTTTAAT+GGG 0.306277 5_1:-12295546 None:intergenic
TTCGCAACACTAAACACTTT+CGG 0.306463 5_1:-12293591 None:intergenic
ATCTCCTCTGCAGTTGCTTC+GGG 0.310294 5_1:-12293495 None:intergenic
AGGCCTGATATTGTAAATAT+TGG 0.310296 5_1:+12292672 Msa0718120:CDS
CATCAACCATGGTTAAAGTT+TGG 0.314545 5_1:+12292583 Msa0718120:exon
AAGACATACCTTAGAGCTTC+AGG 0.319955 5_1:-12292213 None:intergenic
AGACACAATGTGGCAATAAT+TGG 0.321739 5_1:+12293171 Msa0718120:CDS
CAAGTTGAAGCTCTCTCTTC+AGG 0.325134 5_1:+12292797 Msa0718120:CDS
TGAGATTCTGCAACGCTTCT+CGG 0.330906 5_1:-12293454 None:intergenic
CATGGTTAAAGTTTGGCTAT+TGG 0.335807 5_1:+12292590 Msa0718120:exon
ATTGTCTACCATTTGCAAAA+TGG 0.336897 5_1:-12296073 None:intergenic
TATCTCCTCTGCAGTTGCTT+CGG 0.342196 5_1:-12293496 None:intergenic
CTAGTTTCTGTCTCCCTAAC+AGG 0.342346 5_1:-12294694 None:intergenic
TATTAGTTGGAACTGTAGTT+TGG 0.343379 5_1:+12294779 Msa0718120:CDS
CAGCCATCTCCACGCATAAC+TGG 0.344607 5_1:+12296477 Msa0718120:CDS
ACGATCCTGAGCTAGGGTTT+TGG 0.345127 5_1:-12296308 None:intergenic
ATCATCAATGTGGTTGGAAC+CGG 0.347020 5_1:+12294098 Msa0718120:CDS
TAGTGGTAGTAGCACCTGTT+AGG 0.348845 5_1:+12294680 Msa0718120:CDS
ACTAAACCAGACTCAATATA+TGG 0.349812 5_1:-12294661 None:intergenic
ATTTCCTTCCTGAAGCTCTA+AGG 0.352837 5_1:+12292205 Msa0718120:five_prime_UTR
GTCGTTGTGTGCTACTTATA+TGG 0.356677 5_1:+12295445 Msa0718120:CDS
TTTAGTGTTGCGAAGAATCT+TGG 0.359196 5_1:+12293600 Msa0718120:CDS
AGTAGTTCACGCCAACACTA+TGG 0.359304 5_1:+12293563 Msa0718120:CDS
AGTGCTCTAGCAGCTTCTTC+AGG 0.368684 5_1:-12295675 None:intergenic
GTCTAATCACTCTGGATTAT+CGG 0.372751 5_1:+12294142 Msa0718120:CDS
AGCTCAGAAGCCTCGCGGTT+GGG 0.374479 5_1:+12294253 Msa0718120:CDS
TGGTGTAAATGGAGCCAAAA+AGG 0.374511 5_1:-12294725 None:intergenic
GAAAATACAGTGAGCACATT+TGG 0.377522 5_1:+12295423 Msa0718120:CDS
GCAGACCTTGTTGACTACTA+TGG 0.377656 5_1:+12293354 Msa0718120:CDS
AAATGCTAGTCCCTGTGATT+TGG 0.381125 5_1:+12294219 Msa0718120:CDS
CTTGAGAAGGGTCCTCAAAA+TGG 0.382532 5_1:+12295696 Msa0718120:CDS
ACTCACGGAAATACCGATAA+TGG 0.387132 5_1:+12293798 Msa0718120:CDS
CTTATAAGTTTATTCCATAT+GGG 0.389021 5_1:+12294429 Msa0718120:CDS
CGGTGTAAATTTACTATTGT+AGG 0.389253 5_1:+12295774 Msa0718120:CDS
CGGACAAGCTTGGTGTTACT+AGG 0.390831 5_1:-12294467 None:intergenic
CAGGAAGATTCTAAATATAG+AGG 0.393980 5_1:+12292816 Msa0718120:CDS
CTTAATAGCCTTCCATTGTT+CGG 0.398580 5_1:-12294281 None:intergenic
CATTTACAATTCTAAGCTAC+TGG 0.399527 5_1:+12292168 Msa0718120:five_prime_UTR
GGTCTCGGAGGATCGGTTAT+TGG 0.400571 5_1:+12294120 Msa0718120:CDS
AATGGAAGGCTATTAAGAAT+TGG 0.401016 5_1:+12294287 Msa0718120:CDS
GATAACAAATGTGCTAGTTC+AGG 0.402634 5_1:+12293515 Msa0718120:CDS
ACTCAGCCATATATTGAGTC+TGG 0.404527 5_1:+12294655 Msa0718120:CDS
CTCTCCCTGAAGTTATTGCC+TGG 0.405725 5_1:-12294194 None:intergenic
CCAAACCAGGCAATAACTTC+AGG 0.406252 5_1:+12294189 Msa0718120:CDS
ATAATCTTTATTGGAGATGA+TGG 0.413687 5_1:-12296448 None:intergenic
GTTTCATTATTTCTTGACTT+TGG 0.413832 5_1:-12291753 None:intergenic
AGGAACGGAATTGGTGCATT+AGG 0.414414 5_1:+12293420 Msa0718120:CDS
ACTCATCAATACCAATATCT+TGG 0.416136 5_1:-12295629 None:intergenic
TACAAAGGATTCATGACAAA+TGG 0.421966 5_1:+12296103 Msa0718120:CDS
GGCTTCTCTTCAACTGTGGC+TGG 0.425877 5_1:+12292633 Msa0718120:CDS
CATATGGAATAAACTTATAA+GGG 0.429868 5_1:-12294427 None:intergenic
TTTGCAAAATGGCAGTTGAT+AGG 0.431842 5_1:-12296062 None:intergenic
TGGCGGTAACTAACGCCTAT+TGG 0.432370 5_1:-12294314 None:intergenic
AATCATTTGAGAATGTGATT+TGG 0.434174 5_1:-12293911 None:intergenic
GTAATTGGCAAAGAACCAAT+TGG 0.435302 5_1:+12295570 Msa0718120:CDS
GATCTGTGGATCAGCATGTT+TGG 0.435879 5_1:+12296209 Msa0718120:CDS
GTATACATTGATGATGATAA+TGG 0.436911 5_1:+12293396 Msa0718120:CDS
AACTTATAAGGGACAGCATA+AGG 0.436939 5_1:-12294416 None:intergenic
TGACAAGTTCTGATAAAGAA+TGG 0.437045 5_1:-12293303 None:intergenic
CTGGTACTTGCGAGACAAAT+TGG 0.437291 5_1:-12294334 None:intergenic
CAACTTCTGAGGAGTGTGAT+TGG 0.440361 5_1:+12291981 Msa0718120:five_prime_UTR
CGCGTGCTGTCAACACTCCT+TGG 0.443293 5_1:-12293719 None:intergenic
ATATATTGAGTCTGGTTTAG+TGG 0.447740 5_1:+12294663 Msa0718120:CDS
TGCGGTCGACGATGTAAATT+CGG 0.449520 5_1:+12292752 Msa0718120:CDS
AAGTCCAAGAGGGCCATTAT+CGG 0.451799 5_1:-12293811 None:intergenic
ATTGCTAATGGTGAGTCTCT+TGG 0.452500 5_1:-12296036 None:intergenic
CAATTTGTCTCGCAAGTACC+AGG 0.453271 5_1:+12294335 Msa0718120:CDS
AAGGGACAGCATAAGGCAAT+AGG 0.454426 5_1:-12294409 None:intergenic
TCACAGCGATCTTTATCAAA+TGG 0.455581 5_1:+12293323 Msa0718120:CDS
GAAAGTGGAGAAGTTAATCA+AGG 0.456253 5_1:-12292075 None:intergenic
GGAGACAGAAACTAGTGCTT+TGG 0.456942 5_1:+12294702 Msa0718120:CDS
AATCTTGGAATGATGGGAAC+TGG 0.458661 5_1:+12293615 Msa0718120:CDS
GAACCTTGAGTGTAACCAAT+TGG 0.458763 5_1:-12295585 None:intergenic
CTGAAGAGAGAGCTTCAACT+TGG 0.460309 5_1:-12292796 None:intergenic
TTGTTCTTACCATCCCCATA+TGG 0.461876 5_1:-12294443 None:intergenic
TTAAGAATTGGAGTACCAAT+AGG 0.462054 5_1:+12294299 Msa0718120:CDS
AATACCGATAATGGCCCTCT+TGG 0.465354 5_1:+12293807 Msa0718120:CDS
AACCCTAGCTCAGGATCGTC+GGG 0.470053 5_1:+12296312 Msa0718120:CDS
ACTGGTTCTGTTCCTAATTG+TGG 0.470541 5_1:+12296495 Msa0718120:CDS
CTAGTCCCTGTGATTTGGCC+TGG 0.471114 5_1:+12294224 Msa0718120:CDS
GTACGGACAAGAGGGACAAT+TGG 0.472644 5_1:-12291915 None:intergenic
ACGCGTGCACACACCAGATT+CGG 0.475897 5_1:+12293737 Msa0718120:CDS
CCAGGCACAGATACATTTCA+AGG 0.476169 5_1:+12294353 Msa0718120:CDS
CTTGTCCGTCTGATAACAAC+TGG 0.476371 5_1:+12294482 Msa0718120:CDS
ATGTGGTTGGAACCGGGTCT+CGG 0.476531 5_1:+12294105 Msa0718120:CDS
TGCAAGGAAGATGTCGATAT+AGG 0.479803 5_1:-12295748 None:intergenic
CAATCACACTCCTCAGAAGT+TGG 0.482973 5_1:-12291980 None:intergenic
TGTTGCATGAAAGTGTCAAT+TGG 0.484651 5_1:-12296725 None:intergenic
GCAGTTGCTTCGGGTCTCAC+AGG 0.488039 5_1:-12293486 None:intergenic
GACAAGTTCTGATAAAGAAT+GGG 0.488714 5_1:-12293302 None:intergenic
GTAGTTCACGCCAACACTAT+GGG 0.489805 5_1:+12293564 Msa0718120:CDS
ACATTGATGATTTCATATGT+AGG 0.491964 5_1:-12294086 None:intergenic
GGTCAAGAGTTCACCAGAAA+CGG 0.492133 5_1:+12295795 Msa0718120:CDS
TGATGGGAACTGGTTATGTA+TGG 0.493409 5_1:+12293625 Msa0718120:CDS
TGGGAATTGAAGTGAAGAAA+GGG 0.497041 5_1:-12293283 None:intergenic
CTTAGAATTGTAAATGAAGA+AGG 0.497459 5_1:-12292161 None:intergenic
CTCCATTTACACCAAGGATG+TGG 0.498261 5_1:+12294734 Msa0718120:CDS
AGCTGCTAGAGCACTTGAGA+AGG 0.498564 5_1:+12295683 Msa0718120:CDS
AAAGCTGAAAATGAGATAAG+AGG 0.499953 5_1:-12293252 None:intergenic
AAACCCGACGATCCTGAGCT+AGG 0.500062 5_1:-12296315 None:intergenic
GATAATGGAAGGAACGGAAT+TGG 0.500398 5_1:+12293411 Msa0718120:CDS
TAAATTTACACCGGCTTGCA+AGG 0.500407 5_1:-12295764 None:intergenic
AATTCGGATCCAAATATTCT+CGG 0.501823 5_1:+12292768 Msa0718120:CDS
GTGTTTCCAGGCCAAATCAC+AGG 0.502009 5_1:-12294230 None:intergenic
GAAAATGGACAAGGCACTAA+AGG 0.505355 5_1:-12292097 None:intergenic
ATCTCTTATAGAGGTAGTGA+GGG 0.507274 5_1:+12296414 Msa0718120:CDS
GTTGATAGGTCAATTGCTAA+TGG 0.508345 5_1:-12296048 None:intergenic
GATAATTGTCACTGTGAAAG+TGG 0.508548 5_1:-12291838 None:intergenic
TGAACAAGTATTTGTCTAAG+TGG 0.509281 5_1:+12296521 Msa0718120:exon
AAGAGTTCACCAGAAACGGC+TGG 0.511076 5_1:+12295799 Msa0718120:CDS
AGTGGTAGTAGCACCTGTTA+GGG 0.511309 5_1:+12294681 Msa0718120:CDS
CCTTGAAATGTATCTGTGCC+TGG 0.511367 5_1:-12294353 None:intergenic
CTCTACTAATATACTTCATA+CGG 0.511636 5_1:+12296235 Msa0718120:CDS
TATGAAATCATCAATGTGGT+TGG 0.513116 5_1:+12294092 Msa0718120:CDS
TGCGAAGAATCTTGGAATGA+TGG 0.515559 5_1:+12293608 Msa0718120:CDS
ATGGGAATTGAAGTGAAGAA+AGG 0.515929 5_1:-12293284 None:intergenic
AAGAAAGAGTTTAAGCATTG+TGG 0.517701 5_1:-12292121 None:intergenic
GTTAACATGACAGGTGTGAC+AGG 0.520717 5_1:+12294026 Msa0718120:CDS
TATTATATATGCTATTTGCA+TGG 0.532849 5_1:-12296654 None:intergenic
GGAACCGGGTCTCGGAGGAT+CGG 0.535259 5_1:+12294113 Msa0718120:CDS
GGTTATTGGTCTAATCACTC+TGG 0.537000 5_1:+12294134 Msa0718120:CDS
GAACCAGTTATGCGTGGAGA+TGG 0.540357 5_1:-12296480 None:intergenic
AGAGTTCACCAGAAACGGCT+GGG 0.541125 5_1:+12295800 Msa0718120:CDS
GAACCAATTGGTTACACTCA+AGG 0.542568 5_1:+12295582 Msa0718120:CDS
AACCCGACGATCCTGAGCTA+GGG 0.542874 5_1:-12296314 None:intergenic
CCTGACCAAAACCCTAGCTC+AGG 0.544007 5_1:+12296303 Msa0718120:CDS
AAGTTTATTCCATATGGGGA+TGG 0.544461 5_1:+12294434 Msa0718120:CDS
CAGGAATTTGACGGTGCAGT+AGG 0.544564 5_1:+12294589 Msa0718120:intron
ATGGAGAGAATCTCTTATAG+AGG 0.548030 5_1:+12296405 Msa0718120:CDS
CAAACCAGGCAATAACTTCA+GGG 0.551751 5_1:+12294190 Msa0718120:CDS
AAACCCTAGCTCAGGATCGT+CGG 0.552997 5_1:+12296311 Msa0718120:CDS
CAATGGCTTCTCTTCAACTG+TGG 0.554201 5_1:+12292629 Msa0718120:CDS
GCTGCTAGAGCACTTGAGAA+GGG 0.555149 5_1:+12295684 Msa0718120:CDS
TGGGGACTGTATGTGATCTG+TGG 0.555651 5_1:+12296195 Msa0718120:CDS
AATCTCTTATAGAGGTAGTG+AGG 0.556154 5_1:+12296413 Msa0718120:CDS
CAGCTCAGAAGCCTCGCGGT+TGG 0.558518 5_1:+12294252 Msa0718120:CDS
GACAAGGCACTAAAGGAAAG+TGG 0.558982 5_1:-12292090 None:intergenic
ACCTTGTTGACTACTATGGA+TGG 0.559074 5_1:+12293358 Msa0718120:CDS
TTATAAGTTTATTCCATATG+GGG 0.559101 5_1:+12294430 Msa0718120:CDS
ATTTATGAAGTTAACATGAC+AGG 0.559107 5_1:+12294017 Msa0718120:CDS
TGAGCTGTTACAGAACTATG+AGG 0.559881 5_1:-12293195 None:intergenic
AAATTATTTGTACGGACAAG+AGG 0.562235 5_1:-12291924 None:intergenic
TCATCAATGTGGTTGGAACC+GGG 0.562645 5_1:+12294099 Msa0718120:CDS
TCCATTGCCATCTGATGCAA+TGG 0.562987 5_1:+12293689 Msa0718120:CDS
AAAGTGGAGAAGTTAATCAA+GGG 0.564231 5_1:-12292074 None:intergenic
GATGATGATAATGGAAGGAA+CGG 0.567888 5_1:+12293405 Msa0718120:CDS
TGTTATCAGACGGACAAGCT+TGG 0.570826 5_1:-12294477 None:intergenic
AGCTTTCAATGCCTTTAATG+GGG 0.571429 5_1:-12295545 None:intergenic
GCTGTGACAAACCACATCCT+TGG 0.572660 5_1:-12294745 None:intergenic
GATGCATTGAACATCTTCGA+TGG 0.577411 5_1:+12293972 Msa0718120:CDS
ATATTGGTATTGATGAGTCT+AGG 0.579574 5_1:+12295634 Msa0718120:CDS
TCGACATCTTCCTTGCAAGC+CGG 0.580299 5_1:+12295754 Msa0718120:CDS
AATAGCAGAAAGAAAAGCAG+TGG 0.580483 5_1:-12293652 None:intergenic
ATGAAGAAGGAACCAAAAGT+AGG 0.581073 5_1:-12292148 None:intergenic
ATATCATCCATTGCATCAGA+TGG 0.582487 5_1:-12293696 None:intergenic
CTGGCATTCATAATACATCA+AGG 0.584689 5_1:+12292652 Msa0718120:CDS
GCGAAGAATCTTGGAATGAT+GGG 0.585664 5_1:+12293609 Msa0718120:CDS
CAATAGCCAAACTTTAACCA+TGG 0.590621 5_1:-12292589 None:intergenic
AACAAATGTGCTAGTTCAGG+TGG 0.591116 5_1:+12293518 Msa0718120:CDS
GCTCTAATGATTCTCTACAA+TGG 0.591176 5_1:+12292612 Msa0718120:CDS
TCCATTGCATCAGATGGCAA+TGG 0.602552 5_1:-12293690 None:intergenic
AAATGGCAAAACTTGACTCA+CGG 0.603058 5_1:+12293783 Msa0718120:CDS
AGTAGAGCTTGTTTAACACA+AGG 0.608489 5_1:+12296132 Msa0718120:CDS
GAAACACAAACATCTTGTGA+TGG 0.609914 5_1:-12291781 None:intergenic
ATTGAAGTGAAGAAAGGGTA+GGG 0.610945 5_1:-12293278 None:intergenic
AGGGTGAATGATGAATTTAG+AGG 0.611358 5_1:+12294814 Msa0718120:CDS
AATTATTTGTACGGACAAGA+GGG 0.612764 5_1:-12291923 None:intergenic
GAGTTCACCAGAAACGGCTG+GGG 0.618854 5_1:+12295801 Msa0718120:CDS
ATCTTTATTGGAGATGATGG+AGG 0.618940 5_1:-12296445 None:intergenic
ATAACCGATCCTCCGAGACC+CGG 0.622653 5_1:-12294117 None:intergenic
AATTGAAGTGAAGAAAGGGT+AGG 0.623429 5_1:-12293279 None:intergenic
TCACACCAGTTGTTATCAGA+CGG 0.627621 5_1:-12294487 None:intergenic
GCTTTCAATGCCTTTAATGG+GGG 0.630168 5_1:-12295544 None:intergenic
TGTTTCCAGGCCAAATCACA+GGG 0.630570 5_1:-12294229 None:intergenic
CTACAATAGTAAATTTACAC+CGG 0.630833 5_1:-12295773 None:intergenic
ACATTGATGATGATAATGGA+AGG 0.631961 5_1:+12293400 Msa0718120:CDS
TAGACAATGGGGACTTACAA+AGG 0.633097 5_1:+12296088 Msa0718120:CDS
TCTTATAGAGGTAGTGAGGG+AGG 0.636380 5_1:+12296417 Msa0718120:CDS
TTTCATATGTAGGATTAACA+AGG 0.639032 5_1:-12294076 None:intergenic
CATTGTGGAGAAAATGGACA+AGG 0.642314 5_1:-12292106 None:intergenic
GTACTTGCGAGACAAATTGG+CGG 0.642717 5_1:-12294331 None:intergenic
GCATTGAACATCTTCGATGG+AGG 0.646368 5_1:+12293975 Msa0718120:CDS
TCCATCCATAGTAGTCAACA+AGG 0.646917 5_1:-12293359 None:intergenic
GATGCAATGGATGATATCCA+AGG 0.647811 5_1:+12293702 Msa0718120:CDS
GAGCTGTTACAGAACTATGA+GGG 0.647851 5_1:-12293194 None:intergenic
GTATATCAAGCACCGCTCAG+AGG 0.649063 5_1:+12296269 Msa0718120:CDS
ATGGAGGAAACACATTGCGT+AGG 0.650471 5_1:+12293991 Msa0718120:CDS
GCCAAAATATCCAACTTCTG+AGG 0.651090 5_1:+12291970 Msa0718120:five_prime_UTR
TATAGGTAAATCATCAACCA+TGG 0.651297 5_1:+12292572 Msa0718120:intron
CATACCTTAGAGCTTCAGGA+AGG 0.653153 5_1:-12292209 None:intergenic
TAGTTCACGCCAACACTATG+GGG 0.654856 5_1:+12293565 Msa0718120:CDS
GAAACAATTCATTCCAAACC+AGG 0.659152 5_1:+12294176 Msa0718120:CDS
GGAACAGAACCAGTTATGCG+TGG 0.659697 5_1:-12296486 None:intergenic
GAGACCCGAAGCAACTGCAG+AGG 0.663454 5_1:+12293491 Msa0718120:CDS
TTTGCAAATGGTAGACAATG+GGG 0.667655 5_1:+12296077 Msa0718120:CDS
TACATATGAAATCATCAATG+TGG 0.671358 5_1:+12294088 Msa0718120:CDS
AGTTCACGCCAACACTATGG+GGG 0.676435 5_1:+12293566 Msa0718120:CDS
GAGAAGGGTCCTCAAAATGG+CGG 0.676519 5_1:+12295699 Msa0718120:CDS
TGGTTGGAACCGGGTCTCGG+AGG 0.677436 5_1:+12294108 Msa0718120:CDS
AAGAAAGCTGTTGAACTGTG+AGG 0.698394 5_1:-12295521 None:intergenic
GGTCATGGCTAGACACAATG+TGG 0.699792 5_1:+12293161 Msa0718120:CDS
GTTCACGCCAACACTATGGG+GGG 0.717244 5_1:+12293567 Msa0718120:CDS
AACACAGCTCAGAAGCCTCG+CGG 0.732843 5_1:+12294248 Msa0718120:CDS
TCAAAGTTATCTACACTACG+TGG 0.734230 5_1:+12293933 Msa0718120:CDS
GAGAATCAAGTTCCTCTGAG+CGG 0.762406 5_1:-12296281 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTCAAATTATTTGTA+CGG - chr5_1:12291935-12291954 None:intergenic 15.0%
!!! AAAGTTTTTTTTACTCTATA+TGG - chr5_1:12292034-12292053 None:intergenic 15.0%
!! CTTTATGTTTATTGTTATAT+AGG + chr5_1:12292555-12292574 Msa0718120:intron 15.0%
!!! TTTAAGTCAAATCTTTTTTA+TGG - chr5_1:12293026-12293045 None:intergenic 15.0%
!!! GGTTTTGAATAAATTTATTT+TGG - chr5_1:12295191-12295210 None:intergenic 15.0%
!!! TCACATTAATTCTTTTAAAT+TGG - chr5_1:12295878-12295897 None:intergenic 15.0%
!!! TGGAATTTTATTAATTTCAT+GGG + chr5_1:12295926-12295945 Msa0718120:intron 15.0%
!!! TAAATGTACAAGTTTTATTT+AGG + chr5_1:12296587-12296606 Msa0718120:three_prime_UTR 15.0%
!! CTTAAATTTATATTCTTCTA+AGG - chr5_1:12296625-12296644 None:intergenic 15.0%
!!! TTTTTTATTAGCAGATACTT+TGG + chr5_1:12292322-12292341 Msa0718120:intron 20.0%
!!! AAATCTTTTTTATGGTCTAA+CGG - chr5_1:12293018-12293037 None:intergenic 20.0%
!!! ATAAGCGTAAATTTTTTACA+TGG - chr5_1:12293091-12293110 None:intergenic 20.0%
!!! AAAGAAAGTTTGTTTCTAAA+TGG + chr5_1:12293766-12293785 Msa0718120:CDS 20.0%
!!! TTGATGCATTTTTTAAACAA+GGG + chr5_1:12293886-12293905 Msa0718120:CDS 20.0%
!! CATATGGAATAAACTTATAA+GGG - chr5_1:12294430-12294449 None:intergenic 20.0%
!! CTTATAAGTTTATTCCATAT+GGG + chr5_1:12294429-12294448 Msa0718120:CDS 20.0%
!! TTATAAGTTTATTCCATATG+GGG + chr5_1:12294430-12294449 Msa0718120:CDS 20.0%
!!! ATCATGTCAATAATCTTTTA+TGG + chr5_1:12294512-12294531 Msa0718120:intron 20.0%
!!! TGATTTTTGAATTTTCATAC+AGG + chr5_1:12294570-12294589 Msa0718120:intron 20.0%
!!! ATAGTAACCATTTGTTTTTT+AGG - chr5_1:12294844-12294863 None:intergenic 20.0%
!!! AACAAATGGTTACTATTTTT+TGG + chr5_1:12294848-12294867 Msa0718120:CDS 20.0%
!! GTTTAAAAAAGGTTCAATAT+TGG - chr5_1:12294912-12294931 None:intergenic 20.0%
!!! AAATTGATTTTAACGTGTTT+AGG + chr5_1:12295012-12295031 Msa0718120:intron 20.0%
!! TTAAAACTAAAATTCACGTT+TGG - chr5_1:12295097-12295116 None:intergenic 20.0%
!! AACTATTTAATCCAAGATAT+TGG + chr5_1:12295618-12295637 Msa0718120:CDS 20.0%
!!! CTGGAATTTTATTAATTTCA+TGG + chr5_1:12295925-12295944 Msa0718120:intron 20.0%
!!! TATTATATATGCTATTTGCA+TGG - chr5_1:12296657-12296676 None:intergenic 20.0%
!! GTTTCATTATTTCTTGACTT+TGG - chr5_1:12291756-12291775 None:intergenic 25.0%
!! TGAAAACATGTGAGAAATTT+TGG - chr5_1:12291878-12291897 None:intergenic 25.0%
! AAGAAAAAAAGACAAGAAGT+CGG + chr5_1:12291948-12291967 Msa0718120:five_prime_UTR 25.0%
!! CTATATGGTGTTGAAAAATA+TGG - chr5_1:12292019-12292038 None:intergenic 25.0%
! CTTAGAATTGTAAATGAAGA+AGG - chr5_1:12292164-12292183 None:intergenic 25.0%
!! TTTTGCATGAACAAAGATTT+TGG - chr5_1:12292448-12292467 None:intergenic 25.0%
!!! ATGCAAAATCTTGTTTTTCT+TGG + chr5_1:12292460-12292479 Msa0718120:intron 25.0%
! CATAACAACAACAAAACAAA+GGG - chr5_1:12292528-12292547 None:intergenic 25.0%
! ACATAACAACAACAAAACAA+AGG - chr5_1:12292529-12292548 None:intergenic 25.0%
!! TTTTCTTTCAATACTAGTGT+TGG + chr5_1:12292702-12292721 Msa0718120:CDS 25.0%
!! TATGTAATATACAGTTTTGC+AGG + chr5_1:12293140-12293159 Msa0718120:intron 25.0%
!!! GTATACATTGATGATGATAA+TGG + chr5_1:12293396-12293415 Msa0718120:CDS 25.0%
!!! CTTGATGCATTTTTTAAACA+AGG + chr5_1:12293885-12293904 Msa0718120:CDS 25.0%
! AATCATTTGAGAATGTGATT+TGG - chr5_1:12293914-12293933 None:intergenic 25.0%
! ATTTATGAAGTTAACATGAC+AGG + chr5_1:12294017-12294036 Msa0718120:CDS 25.0%
! TTTCATATGTAGGATTAACA+AGG - chr5_1:12294079-12294098 None:intergenic 25.0%
!! ACATTGATGATTTCATATGT+AGG - chr5_1:12294089-12294108 None:intergenic 25.0%
! TACATATGAAATCATCAATG+TGG + chr5_1:12294088-12294107 Msa0718120:CDS 25.0%
! CCATATGGAATAAACTTATA+AGG - chr5_1:12294431-12294450 None:intergenic 25.0%
! CCTTATAAGTTTATTCCATA+TGG + chr5_1:12294428-12294447 Msa0718120:CDS 25.0%
!! CAATAATCTTTTATGGAGTT+TGG + chr5_1:12294519-12294538 Msa0718120:intron 25.0%
!! ATTTTCATACAGGAATTTGA+CGG + chr5_1:12294580-12294599 Msa0718120:intron 25.0%
! TACTACAACAAGAACAAAAA+TGG + chr5_1:12294624-12294643 Msa0718120:CDS 25.0%
! TAATGCATGCAATATTTATG+TGG + chr5_1:12294946-12294965 Msa0718120:intron 25.0%
! TAACTTGAAGTTGAGATTAA+AGG + chr5_1:12295062-12295081 Msa0718120:intron 25.0%
! AATGAAACTTGATTACTCAA+AGG - chr5_1:12295384-12295403 None:intergenic 25.0%
! CTACAATAGTAAATTTACAC+CGG - chr5_1:12295776-12295795 None:intergenic 25.0%
!! TGAATAACAATTTTAGACTC+TGG - chr5_1:12295977-12295996 None:intergenic 25.0%
!! ACTCAAACTAAAAAGCTTTT+GGG + chr5_1:12296176-12296195 Msa0718120:CDS 25.0%
! ATAATCTTTATTGGAGATGA+TGG - chr5_1:12296451-12296470 None:intergenic 25.0%
! AATTTCTCACATGTTTTCAG+TGG + chr5_1:12291879-12291898 Msa0718120:five_prime_UTR 30.0%
AATTATTTGTACGGACAAGA+GGG - chr5_1:12291926-12291945 None:intergenic 30.0%
AAATTATTTGTACGGACAAG+AGG - chr5_1:12291927-12291946 None:intergenic 30.0%
AAAGTGGAGAAGTTAATCAA+GGG - chr5_1:12292077-12292096 None:intergenic 30.0%
! TTTAAGCATTGTGGAGAAAA+TGG - chr5_1:12292115-12292134 None:intergenic 30.0%
! AAGAAAGAGTTTAAGCATTG+TGG - chr5_1:12292124-12292143 None:intergenic 30.0%
! TCTTTCTTTGTTCCTACTTT+TGG + chr5_1:12292136-12292155 Msa0718120:five_prime_UTR 30.0%
CATTTACAATTCTAAGCTAC+TGG + chr5_1:12292168-12292187 Msa0718120:five_prime_UTR 30.0%
! TTTTTGTCCTTTCACATGTT+AGG + chr5_1:12292268-12292287 Msa0718120:intron 30.0%
! TTTTGTCCTTTCACATGTTA+GGG + chr5_1:12292269-12292288 Msa0718120:intron 30.0%
! GCATAAGATAAAGCAGATTT+TGG - chr5_1:12292361-12292380 None:intergenic 30.0%
TATAGGTAAATCATCAACCA+TGG + chr5_1:12292572-12292591 Msa0718120:intron 30.0%
AGGCCTGATATTGTAAATAT+TGG + chr5_1:12292672-12292691 Msa0718120:CDS 30.0%
GCTCCAATATTTACAATATC+AGG - chr5_1:12292678-12292697 None:intergenic 30.0%
!! AAAAATTGCTTTAGAAGCTG+CGG + chr5_1:12292734-12292753 Msa0718120:CDS 30.0%
AATTCGGATCCAAATATTCT+CGG + chr5_1:12292768-12292787 Msa0718120:CDS 30.0%
CAGGAAGATTCTAAATATAG+AGG + chr5_1:12292816-12292835 Msa0718120:CDS 30.0%
AAAGCTGAAAATGAGATAAG+AGG - chr5_1:12293255-12293274 None:intergenic 30.0%
! GACAAGTTCTGATAAAGAAT+GGG - chr5_1:12293305-12293324 None:intergenic 30.0%
! TGACAAGTTCTGATAAAGAA+TGG - chr5_1:12293306-12293325 None:intergenic 30.0%
!! ACATTGATGATGATAATGGA+AGG + chr5_1:12293400-12293419 Msa0718120:CDS 30.0%
ACAAAAAACTAAGTCCAAGA+GGG - chr5_1:12293824-12293843 None:intergenic 30.0%
TATGAAATCATCAATGTGGT+TGG + chr5_1:12294092-12294111 Msa0718120:CDS 30.0%
AATGGAAGGCTATTAAGAAT+TGG + chr5_1:12294287-12294306 Msa0718120:CDS 30.0%
! TTAAGAATTGGAGTACCAAT+AGG + chr5_1:12294299-12294318 Msa0718120:CDS 30.0%
!! GGAGTTTGGATGTTTTATTA+TGG + chr5_1:12294533-12294552 Msa0718120:intron 30.0%
TACAACAAGAACAAAAATGG+TGG + chr5_1:12294627-12294646 Msa0718120:CDS 30.0%
ACTAAACCAGACTCAATATA+TGG - chr5_1:12294664-12294683 None:intergenic 30.0%
! ATATATTGAGTCTGGTTTAG+TGG + chr5_1:12294663-12294682 Msa0718120:CDS 30.0%
!! GCTCTCTTTTTCATATTAGT+TGG + chr5_1:12294766-12294785 Msa0718120:CDS 30.0%
TATTAGTTGGAACTGTAGTT+TGG + chr5_1:12294779-12294798 Msa0718120:CDS 30.0%
!!! GTAACCATTTGTTTTTTAGG+TGG - chr5_1:12294841-12294860 None:intergenic 30.0%
!! GCATTGGTTTGGTTTAAAAA+AGG - chr5_1:12294923-12294942 None:intergenic 30.0%
!! ATGCATTATTAGCATTGGTT+TGG - chr5_1:12294934-12294953 None:intergenic 30.0%
ATTGCATGCATTATTAGCAT+TGG - chr5_1:12294939-12294958 None:intergenic 30.0%
TCAAACACACACTAATATCA+AGG + chr5_1:12295231-12295250 Msa0718120:intron 30.0%
TTGTTTGTGTTGTATTTGAC+AGG + chr5_1:12295274-12295293 Msa0718120:intron 30.0%
ATGTCATAGAAGACAAGAAT+TGG - chr5_1:12295338-12295357 None:intergenic 30.0%
CTTGTCTTCTATGACATATA+TGG + chr5_1:12295341-12295360 Msa0718120:intron 30.0%
! TCATTTTATCCACACTATGT+AGG + chr5_1:12295399-12295418 Msa0718120:intron 30.0%
! CATTTTATCCACACTATGTA+GGG + chr5_1:12295400-12295419 Msa0718120:intron 30.0%
! ATTTTATCCACACTATGTAG+GGG + chr5_1:12295401-12295420 Msa0718120:intron 30.0%
AAGCTTTCAATGCCTTTAAT+GGG - chr5_1:12295549-12295568 None:intergenic 30.0%
TAAGCTTTCAATGCCTTTAA+TGG - chr5_1:12295550-12295569 None:intergenic 30.0%
ACTCATCAATACCAATATCT+TGG - chr5_1:12295632-12295651 None:intergenic 30.0%
!! ATATTGGTATTGATGAGTCT+AGG + chr5_1:12295634-12295653 Msa0718120:CDS 30.0%
CGGTGTAAATTTACTATTGT+AGG + chr5_1:12295774-12295793 Msa0718120:CDS 30.0%
GCAATTTCTTGCAACAAAAT+TGG + chr5_1:12295852-12295871 Msa0718120:intron 30.0%
ATAAAATTCCAGAATCATGC+TGG - chr5_1:12295917-12295936 None:intergenic 30.0%
ATTGTCTACCATTTGCAAAA+TGG - chr5_1:12296076-12296095 None:intergenic 30.0%
! ATTTTGCAAATGGTAGACAA+TGG + chr5_1:12296075-12296094 Msa0718120:CDS 30.0%
! TTTTGCAAATGGTAGACAAT+GGG + chr5_1:12296076-12296095 Msa0718120:CDS 30.0%
TACAAAGGATTCATGACAAA+TGG + chr5_1:12296103-12296122 Msa0718120:CDS 30.0%
! GACTCAAACTAAAAAGCTTT+TGG + chr5_1:12296175-12296194 Msa0718120:CDS 30.0%
! CTCAAACTAAAAAGCTTTTG+GGG + chr5_1:12296177-12296196 Msa0718120:CDS 30.0%
! CCATTTTCTTTCTCTTTGAT+CGG - chr5_1:12296389-12296408 None:intergenic 30.0%
CTGAGCATCATAATCTTTAT+TGG - chr5_1:12296460-12296479 None:intergenic 30.0%
TGAACAAGTATTTGTCTAAG+TGG + chr5_1:12296521-12296540 Msa0718120:exon 30.0%
TTGTCTAAGTGGTGTAATTA+TGG + chr5_1:12296532-12296551 Msa0718120:exon 30.0%
GAAACACAAACATCTTGTGA+TGG - chr5_1:12291784-12291803 None:intergenic 35.0%
GATAATTGTCACTGTGAAAG+TGG - chr5_1:12291841-12291860 None:intergenic 35.0%
! TCCTCAGAAGTTGGATATTT+TGG - chr5_1:12291974-12291993 None:intergenic 35.0%
GAAAGTGGAGAAGTTAATCA+AGG - chr5_1:12292078-12292097 None:intergenic 35.0%
ATGAAGAAGGAACCAAAAGT+AGG - chr5_1:12292151-12292170 None:intergenic 35.0%
CAAAATCCCTAACATGTGAA+AGG - chr5_1:12292278-12292297 None:intergenic 35.0%
!!! CTTGGTGCTTTATGACTTTT+TGG + chr5_1:12292478-12292497 Msa0718120:intron 35.0%
CATCAACCATGGTTAAAGTT+TGG + chr5_1:12292583-12292602 Msa0718120:exon 35.0%
CAATAGCCAAACTTTAACCA+TGG - chr5_1:12292592-12292611 None:intergenic 35.0%
CATGGTTAAAGTTTGGCTAT+TGG + chr5_1:12292590-12292609 Msa0718120:exon 35.0%
GCTCTAATGATTCTCTACAA+TGG + chr5_1:12292612-12292631 Msa0718120:CDS 35.0%
CTGGCATTCATAATACATCA+AGG + chr5_1:12292652-12292671 Msa0718120:CDS 35.0%
GGTTCATCAACTCATGAAAA+GGG - chr5_1:12292882-12292901 None:intergenic 35.0%
AGGTTCATCAACTCATGAAA+AGG - chr5_1:12292883-12292902 None:intergenic 35.0%
! ATATACAGTTTTGCAGGTCA+TGG + chr5_1:12293146-12293165 Msa0718120:intron 35.0%
AGACACAATGTGGCAATAAT+TGG + chr5_1:12293171-12293190 Msa0718120:CDS 35.0%
ATTGAAGTGAAGAAAGGGTA+GGG - chr5_1:12293281-12293300 None:intergenic 35.0%
AATTGAAGTGAAGAAAGGGT+AGG - chr5_1:12293282-12293301 None:intergenic 35.0%
TGGGAATTGAAGTGAAGAAA+GGG - chr5_1:12293286-12293305 None:intergenic 35.0%
ATGGGAATTGAAGTGAAGAA+AGG - chr5_1:12293287-12293306 None:intergenic 35.0%
TCACAGCGATCTTTATCAAA+TGG + chr5_1:12293323-12293342 Msa0718120:CDS 35.0%
!! GATGATGATAATGGAAGGAA+CGG + chr5_1:12293405-12293424 Msa0718120:CDS 35.0%
GATAACAAATGTGCTAGTTC+AGG + chr5_1:12293515-12293534 Msa0718120:CDS 35.0%
TTCGCAACACTAAACACTTT+CGG - chr5_1:12293594-12293613 None:intergenic 35.0%
TTTAGTGTTGCGAAGAATCT+TGG + chr5_1:12293600-12293619 Msa0718120:CDS 35.0%
AATAGCAGAAAGAAAAGCAG+TGG - chr5_1:12293655-12293674 None:intergenic 35.0%
ATATCATCCATTGCATCAGA+TGG - chr5_1:12293699-12293718 None:intergenic 35.0%
! TTTCTTTTAAGCTCCGAATC+TGG - chr5_1:12293753-12293772 None:intergenic 35.0%
AAATGGCAAAACTTGACTCA+CGG + chr5_1:12293783-12293802 Msa0718120:CDS 35.0%
GACAAAAAACTAAGTCCAAG+AGG - chr5_1:12293825-12293844 None:intergenic 35.0%
TCAAAGTTATCTACACTACG+TGG + chr5_1:12293933-12293952 Msa0718120:CDS 35.0%
GTCTAATCACTCTGGATTAT+CGG + chr5_1:12294142-12294161 Msa0718120:CDS 35.0%
! GGTTTGGAATGAATTGTTTC+TGG - chr5_1:12294176-12294195 None:intergenic 35.0%
GAAACAATTCATTCCAAACC+AGG + chr5_1:12294176-12294195 Msa0718120:CDS 35.0%
CTTAATAGCCTTCCATTGTT+CGG - chr5_1:12294284-12294303 None:intergenic 35.0%
AACTTATAAGGGACAGCATA+AGG - chr5_1:12294419-12294438 None:intergenic 35.0%
AAGTTTATTCCATATGGGGA+TGG + chr5_1:12294434-12294453 Msa0718120:CDS 35.0%
! TGGAACTGTAGTTTGGATTT+TGG + chr5_1:12294786-12294805 Msa0718120:CDS 35.0%
!!! TAGTTTGGATTTTGGAGCAT+AGG + chr5_1:12294794-12294813 Msa0718120:CDS 35.0%
!!! AGTTTGGATTTTGGAGCATA+GGG + chr5_1:12294795-12294814 Msa0718120:CDS 35.0%
AGGGTGAATGATGAATTTAG+AGG + chr5_1:12294814-12294833 Msa0718120:CDS 35.0%
AGGACCACCTAAAAAACAAA+TGG + chr5_1:12294834-12294853 Msa0718120:CDS 35.0%
TGCATGCAATATTTATGTGG+AGG + chr5_1:12294949-12294968 Msa0718120:intron 35.0%
ATTCTACAACAAGCGGAAAT+TGG - chr5_1:12295212-12295231 None:intergenic 35.0%
GTGTTTGATTCTACAACAAG+CGG - chr5_1:12295219-12295238 None:intergenic 35.0%
GAAAATACAGTGAGCACATT+TGG + chr5_1:12295423-12295442 Msa0718120:CDS 35.0%
AGCTTTCAATGCCTTTAATG+GGG - chr5_1:12295548-12295567 None:intergenic 35.0%
! GGCATTGAAAGCTTAGTAAT+TGG + chr5_1:12295555-12295574 Msa0718120:CDS 35.0%
GTAATTGGCAAAGAACCAAT+TGG + chr5_1:12295570-12295589 Msa0718120:CDS 35.0%
! TTTTAGTACCAGCATGATTC+TGG + chr5_1:12295906-12295925 Msa0718120:intron 35.0%
TTGTAGGACTTCAGAGAATT+TGG - chr5_1:12295952-12295971 None:intergenic 35.0%
! ATTTTAGACTCTGGCATTGT+AGG - chr5_1:12295968-12295987 None:intergenic 35.0%
! TGTTCTTAATTGTGCTGTTC+AGG + chr5_1:12296008-12296027 Msa0718120:intron 35.0%
! GTTCTTAATTGTGCTGTTCA+GGG + chr5_1:12296009-12296028 Msa0718120:intron 35.0%
! GTTGATAGGTCAATTGCTAA+TGG - chr5_1:12296051-12296070 None:intergenic 35.0%
TTTGCAAAATGGCAGTTGAT+AGG - chr5_1:12296065-12296084 None:intergenic 35.0%
!!! ATCAACTGCCATTTTGCAAA+TGG + chr5_1:12296065-12296084 Msa0718120:CDS 35.0%
TTTGCAAATGGTAGACAATG+GGG + chr5_1:12296077-12296096 Msa0718120:CDS 35.0%
! AGTAGAGCTTGTTTAACACA+AGG + chr5_1:12296132-12296151 Msa0718120:CDS 35.0%
!! CTCTTCTTTTTCATCTGCAA+AGG - chr5_1:12296355-12296374 None:intergenic 35.0%
CCGATCAAAGAGAAAGAAAA+TGG + chr5_1:12296386-12296405 Msa0718120:CDS 35.0%
ATGGAGAGAATCTCTTATAG+AGG + chr5_1:12296405-12296424 Msa0718120:CDS 35.0%
AATCTCTTATAGAGGTAGTG+AGG + chr5_1:12296413-12296432 Msa0718120:CDS 35.0%
ATCTCTTATAGAGGTAGTGA+GGG + chr5_1:12296414-12296433 Msa0718120:CDS 35.0%
! ATCTTTATTGGAGATGATGG+AGG - chr5_1:12296448-12296467 None:intergenic 35.0%
ACTTGTTCACTTCCACAATT+AGG - chr5_1:12296510-12296529 None:intergenic 35.0%
!! TGTTGCATGAAAGTGTCAAT+TGG - chr5_1:12296728-12296747 None:intergenic 35.0%
GCCAAAATATCCAACTTCTG+AGG + chr5_1:12291970-12291989 Msa0718120:five_prime_UTR 40.0%
! GAAAATGGACAAGGCACTAA+AGG - chr5_1:12292100-12292119 None:intergenic 40.0%
CATTGTGGAGAAAATGGACA+AGG - chr5_1:12292109-12292128 None:intergenic 40.0%
ATTTCCTTCCTGAAGCTCTA+AGG + chr5_1:12292205-12292224 Msa0718120:five_prime_UTR 40.0%
AAGACATACCTTAGAGCTTC+AGG - chr5_1:12292216-12292235 None:intergenic 40.0%
!! TTGGTCTTGCCGAGAATATT+TGG - chr5_1:12292780-12292799 None:intergenic 40.0%
!! AGGTTTTCTAAGCATTGCTG+AGG + chr5_1:12292836-12292855 Msa0718120:CDS 40.0%
!! GGTTTTCTAAGCATTGCTGA+GGG + chr5_1:12292837-12292856 Msa0718120:CDS 40.0%
GAGCTGTTACAGAACTATGA+GGG - chr5_1:12293197-12293216 None:intergenic 40.0%
TGAGCTGTTACAGAACTATG+AGG - chr5_1:12293198-12293217 None:intergenic 40.0%
! ACCTTGTTGACTACTATGGA+TGG + chr5_1:12293358-12293377 Msa0718120:CDS 40.0%
TCCATCCATAGTAGTCAACA+AGG - chr5_1:12293362-12293381 None:intergenic 40.0%
!! GATAATGGAAGGAACGGAAT+TGG + chr5_1:12293411-12293430 Msa0718120:CDS 40.0%
AACAAATGTGCTAGTTCAGG+TGG + chr5_1:12293518-12293537 Msa0718120:CDS 40.0%
TCGCAACACTAAACACTTTC+GGG - chr5_1:12293593-12293612 None:intergenic 40.0%
TGCGAAGAATCTTGGAATGA+TGG + chr5_1:12293608-12293627 Msa0718120:CDS 40.0%
GCGAAGAATCTTGGAATGAT+GGG + chr5_1:12293609-12293628 Msa0718120:CDS 40.0%
! AATCTTGGAATGATGGGAAC+TGG + chr5_1:12293615-12293634 Msa0718120:CDS 40.0%
TGATGGGAACTGGTTATGTA+TGG + chr5_1:12293625-12293644 Msa0718120:CDS 40.0%
GATGCAATGGATGATATCCA+AGG + chr5_1:12293702-12293721 Msa0718120:CDS 40.0%
ACTCACGGAAATACCGATAA+TGG + chr5_1:12293798-12293817 Msa0718120:CDS 40.0%
GATGCATTGAACATCTTCGA+TGG + chr5_1:12293972-12293991 Msa0718120:CDS 40.0%
ATCATCAATGTGGTTGGAAC+CGG + chr5_1:12294098-12294117 Msa0718120:CDS 40.0%
! GGTTATTGGTCTAATCACTC+TGG + chr5_1:12294134-12294153 Msa0718120:CDS 40.0%
CAAACCAGGCAATAACTTCA+GGG + chr5_1:12294190-12294209 Msa0718120:CDS 40.0%
AAATGCTAGTCCCTGTGATT+TGG + chr5_1:12294219-12294238 Msa0718120:CDS 40.0%
TTGTTCTTACCATCCCCATA+TGG - chr5_1:12294446-12294465 None:intergenic 40.0%
TCACACCAGTTGTTATCAGA+CGG - chr5_1:12294490-12294509 None:intergenic 40.0%
ACTCAGCCATATATTGAGTC+TGG + chr5_1:12294655-12294674 Msa0718120:CDS 40.0%
!! AACTAGTGCTTTGGCCTTTT+TGG + chr5_1:12294711-12294730 Msa0718120:CDS 40.0%
TGGTGTAAATGGAGCCAAAA+AGG - chr5_1:12294728-12294747 None:intergenic 40.0%
!!! TTTTGGCTCCATTTACACCA+AGG + chr5_1:12294728-12294747 Msa0718120:CDS 40.0%
! AACCACATCCTTGGTGTAAA+TGG - chr5_1:12294739-12294758 None:intergenic 40.0%
! TATTATCTCCCCCTTTTCCA+TGG + chr5_1:12294882-12294901 Msa0718120:intron 40.0%
TATTGGTGAGCCATGGAAAA+GGG - chr5_1:12294895-12294914 None:intergenic 40.0%
ATATTGGTGAGCCATGGAAA+AGG - chr5_1:12294896-12294915 None:intergenic 40.0%
TGCAATTCTGTGAGAGGAAA+AGG + chr5_1:12294973-12294992 Msa0718120:intron 40.0%
! GTATTTTCCCCTACATAGTG+TGG - chr5_1:12295411-12295430 None:intergenic 40.0%
!! GTCGTTGTGTGCTACTTATA+TGG + chr5_1:12295445-12295464 Msa0718120:CDS 40.0%
AAGAAAGCTGTTGAACTGTG+AGG - chr5_1:12295524-12295543 None:intergenic 40.0%
GCTTTCAATGCCTTTAATGG+GGG - chr5_1:12295547-12295566 None:intergenic 40.0%
GAACCAATTGGTTACACTCA+AGG + chr5_1:12295582-12295601 Msa0718120:CDS 40.0%
GAACCTTGAGTGTAACCAAT+TGG - chr5_1:12295588-12295607 None:intergenic 40.0%
TGCAAGGAAGATGTCGATAT+AGG - chr5_1:12295751-12295770 None:intergenic 40.0%
!! TAAATTTACACCGGCTTGCA+AGG - chr5_1:12295767-12295786 None:intergenic 40.0%
ATTGCTAATGGTGAGTCTCT+TGG - chr5_1:12296039-12296058 None:intergenic 40.0%
TAGACAATGGGGACTTACAA+AGG + chr5_1:12296088-12296107 Msa0718120:CDS 40.0%
!! ACTGGTTCTGTTCCTAATTG+TGG + chr5_1:12296495-12296514 Msa0718120:CDS 40.0%
CAATCACACTCCTCAGAAGT+TGG - chr5_1:12291983-12292002 None:intergenic 45.0%
! CAACTTCTGAGGAGTGTGAT+TGG + chr5_1:12291981-12292000 Msa0718120:five_prime_UTR 45.0%
! GACAAGGCACTAAAGGAAAG+TGG - chr5_1:12292093-12292112 None:intergenic 45.0%
CATACCTTAGAGCTTCAGGA+AGG - chr5_1:12292212-12292231 None:intergenic 45.0%
CAATGGCTTCTCTTCAACTG+TGG + chr5_1:12292629-12292648 Msa0718120:CDS 45.0%
TGCGGTCGACGATGTAAATT+CGG + chr5_1:12292752-12292771 Msa0718120:CDS 45.0%
CTGAAGAGAGAGCTTCAACT+TGG - chr5_1:12292799-12292818 None:intergenic 45.0%
! CAAGTTGAAGCTCTCTCTTC+AGG + chr5_1:12292797-12292816 Msa0718120:CDS 45.0%
! GCAGACCTTGTTGACTACTA+TGG + chr5_1:12293354-12293373 Msa0718120:CDS 45.0%
AGGAACGGAATTGGTGCATT+AGG + chr5_1:12293420-12293439 Msa0718120:CDS 45.0%
TGAGATTCTGCAACGCTTCT+CGG - chr5_1:12293457-12293476 None:intergenic 45.0%
TATCTCCTCTGCAGTTGCTT+CGG - chr5_1:12293499-12293518 None:intergenic 45.0%
AGTAGTTCACGCCAACACTA+TGG + chr5_1:12293563-12293582 Msa0718120:CDS 45.0%
GTAGTTCACGCCAACACTAT+GGG + chr5_1:12293564-12293583 Msa0718120:CDS 45.0%
TAGTTCACGCCAACACTATG+GGG + chr5_1:12293565-12293584 Msa0718120:CDS 45.0%
TCCATTGCCATCTGATGCAA+TGG + chr5_1:12293689-12293708 Msa0718120:CDS 45.0%
TCCATTGCATCAGATGGCAA+TGG - chr5_1:12293693-12293712 None:intergenic 45.0%
! AATACCGATAATGGCCCTCT+TGG + chr5_1:12293807-12293826 Msa0718120:CDS 45.0%
AAGTCCAAGAGGGCCATTAT+CGG - chr5_1:12293814-12293833 None:intergenic 45.0%
GCATTGAACATCTTCGATGG+AGG + chr5_1:12293975-12293994 Msa0718120:CDS 45.0%
ATGGAGGAAACACATTGCGT+AGG + chr5_1:12293991-12294010 Msa0718120:CDS 45.0%
GTTAACATGACAGGTGTGAC+AGG + chr5_1:12294026-12294045 Msa0718120:CDS 45.0%
TCATCAATGTGGTTGGAACC+GGG + chr5_1:12294099-12294118 Msa0718120:CDS 45.0%
CCTGAAGTTATTGCCTGGTT+TGG - chr5_1:12294192-12294211 None:intergenic 45.0%
CCAAACCAGGCAATAACTTC+AGG + chr5_1:12294189-12294208 Msa0718120:CDS 45.0%
TGTTTCCAGGCCAAATCACA+GGG - chr5_1:12294232-12294251 None:intergenic 45.0%
! GGTTGGGTTTTTCCGAACAA+TGG + chr5_1:12294269-12294288 Msa0718120:CDS 45.0%
! GGGTTTTTCCGAACAATGGA+AGG + chr5_1:12294273-12294292 Msa0718120:CDS 45.0%
GTACTTGCGAGACAAATTGG+CGG - chr5_1:12294334-12294353 None:intergenic 45.0%
CTGGTACTTGCGAGACAAAT+TGG - chr5_1:12294337-12294356 None:intergenic 45.0%
CAATTTGTCTCGCAAGTACC+AGG + chr5_1:12294335-12294354 Msa0718120:CDS 45.0%
CCTTGAAATGTATCTGTGCC+TGG - chr5_1:12294356-12294375 None:intergenic 45.0%
CCAGGCACAGATACATTTCA+AGG + chr5_1:12294353-12294372 Msa0718120:CDS 45.0%
AAGGGACAGCATAAGGCAAT+AGG - chr5_1:12294412-12294431 None:intergenic 45.0%
TGTTATCAGACGGACAAGCT+TGG - chr5_1:12294480-12294499 None:intergenic 45.0%
CTTGTCCGTCTGATAACAAC+TGG + chr5_1:12294482-12294501 Msa0718120:CDS 45.0%
TAGTGGTAGTAGCACCTGTT+AGG + chr5_1:12294680-12294699 Msa0718120:CDS 45.0%
AGTGGTAGTAGCACCTGTTA+GGG + chr5_1:12294681-12294700 Msa0718120:CDS 45.0%
CTAGTTTCTGTCTCCCTAAC+AGG - chr5_1:12294697-12294716 None:intergenic 45.0%
GGAGACAGAAACTAGTGCTT+TGG + chr5_1:12294702-12294721 Msa0718120:CDS 45.0%
CTCCATTTACACCAAGGATG+TGG + chr5_1:12294734-12294753 Msa0718120:CDS 45.0%
ATTGGTGAGCCATGGAAAAG+GGG - chr5_1:12294894-12294913 None:intergenic 45.0%
GGTTCAATATTGGTGAGCCA+TGG - chr5_1:12294902-12294921 None:intergenic 45.0%
CAGCTTTCTTCCCCCATTAA+AGG + chr5_1:12295534-12295553 Msa0718120:CDS 45.0%
CTTGAGAAGGGTCCTCAAAA+TGG + chr5_1:12295696-12295715 Msa0718120:CDS 45.0%
GGTCAAGAGTTCACCAGAAA+CGG + chr5_1:12295795-12295814 Msa0718120:CDS 45.0%
GATCTGTGGATCAGCATGTT+TGG + chr5_1:12296209-12296228 Msa0718120:CDS 45.0%
GAGAATCAAGTTCCTCTGAG+CGG - chr5_1:12296284-12296303 None:intergenic 45.0%
TCTTATAGAGGTAGTGAGGG+AGG + chr5_1:12296417-12296436 Msa0718120:CDS 45.0%
!! AAAAAAATAAAAAATTTACA+AGG - chr5_1:12292903-12292922 None:intergenic 5.0%
!!! TTGTAAATTTTTTATTTTTT+TGG + chr5_1:12292902-12292921 Msa0718120:intron 5.0%
GTACGGACAAGAGGGACAAT+TGG - chr5_1:12291918-12291937 None:intergenic 50.0%
GGTCATGGCTAGACACAATG+TGG + chr5_1:12293161-12293180 Msa0718120:CDS 50.0%
ATCTCCTCTGCAGTTGCTTC+GGG - chr5_1:12293498-12293517 None:intergenic 50.0%
AGTTCACGCCAACACTATGG+GGG + chr5_1:12293566-12293585 Msa0718120:CDS 50.0%
CTCTCCCTGAAGTTATTGCC+TGG - chr5_1:12294197-12294216 None:intergenic 50.0%
GTGTTTCCAGGCCAAATCAC+AGG - chr5_1:12294233-12294252 None:intergenic 50.0%
TGGCGGTAACTAACGCCTAT+TGG - chr5_1:12294317-12294336 None:intergenic 50.0%
!! CGGACAAGCTTGGTGTTACT+AGG - chr5_1:12294470-12294489 None:intergenic 50.0%
CAGGAATTTGACGGTGCAGT+AGG + chr5_1:12294589-12294608 Msa0718120:intron 50.0%
GCTGTGACAAACCACATCCT+TGG - chr5_1:12294748-12294767 None:intergenic 50.0%
TTGGTGAGCCATGGAAAAGG+GGG - chr5_1:12294893-12294912 None:intergenic 50.0%
AGTGCTCTAGCAGCTTCTTC+AGG - chr5_1:12295678-12295697 None:intergenic 50.0%
! AGCTGCTAGAGCACTTGAGA+AGG + chr5_1:12295683-12295702 Msa0718120:CDS 50.0%
! GCTGCTAGAGCACTTGAGAA+GGG + chr5_1:12295684-12295703 Msa0718120:CDS 50.0%
GAGAAGGGTCCTCAAAATGG+CGG + chr5_1:12295699-12295718 Msa0718120:CDS 50.0%
TCGACATCTTCCTTGCAAGC+CGG + chr5_1:12295754-12295773 Msa0718120:CDS 50.0%
AAGAGTTCACCAGAAACGGC+TGG + chr5_1:12295799-12295818 Msa0718120:CDS 50.0%
AGAGTTCACCAGAAACGGCT+GGG + chr5_1:12295800-12295819 Msa0718120:CDS 50.0%
TACAAATCCCCAGCCGTTTC+TGG - chr5_1:12295811-12295830 None:intergenic 50.0%
TGGGGACTGTATGTGATCTG+TGG + chr5_1:12296195-12296214 Msa0718120:CDS 50.0%
! GTATATCAAGCACCGCTCAG+AGG + chr5_1:12296269-12296288 Msa0718120:CDS 50.0%
! ACGATCCTGAGCTAGGGTTT+TGG - chr5_1:12296311-12296330 None:intergenic 50.0%
AAACCCTAGCTCAGGATCGT+CGG + chr5_1:12296311-12296330 Msa0718120:CDS 50.0%
GAACCAGTTATGCGTGGAGA+TGG - chr5_1:12296483-12296502 None:intergenic 50.0%
GGAACAGAACCAGTTATGCG+TGG - chr5_1:12296489-12296508 None:intergenic 50.0%
GGCTTCTCTTCAACTGTGGC+TGG + chr5_1:12292633-12292652 Msa0718120:CDS 55.0%
GTTCACGCCAACACTATGGG+GGG + chr5_1:12293567-12293586 Msa0718120:CDS 55.0%
ACGCGTGCACACACCAGATT+CGG + chr5_1:12293737-12293756 Msa0718120:CDS 55.0%
ATGTGGTTGGAACCGGGTCT+CGG + chr5_1:12294105-12294124 Msa0718120:CDS 55.0%
ATAACCGATCCTCCGAGACC+CGG - chr5_1:12294120-12294139 None:intergenic 55.0%
GGTCTCGGAGGATCGGTTAT+TGG + chr5_1:12294120-12294139 Msa0718120:CDS 55.0%
! CTAGTCCCTGTGATTTGGCC+TGG + chr5_1:12294224-12294243 Msa0718120:CDS 55.0%
GGCTTCTGAGCTGTGTTTCC+AGG - chr5_1:12294245-12294264 None:intergenic 55.0%
AACACAGCTCAGAAGCCTCG+CGG + chr5_1:12294248-12294267 Msa0718120:CDS 55.0%
TTCGGAAAAACCCAACCGCG+AGG - chr5_1:12294266-12294285 None:intergenic 55.0%
GGAGGCTGCAATTCTGTGAG+AGG + chr5_1:12294967-12294986 Msa0718120:intron 55.0%
GAGTTCACCAGAAACGGCTG+GGG + chr5_1:12295801-12295820 Msa0718120:CDS 55.0%
!! CCTGAGCTAGGGTTTTGGTC+AGG - chr5_1:12296306-12296325 None:intergenic 55.0%
CCTGACCAAAACCCTAGCTC+AGG + chr5_1:12296303-12296322 Msa0718120:CDS 55.0%
AACCCTAGCTCAGGATCGTC+GGG + chr5_1:12296312-12296331 Msa0718120:CDS 55.0%
AACCCGACGATCCTGAGCTA+GGG - chr5_1:12296317-12296336 None:intergenic 55.0%
AAACCCGACGATCCTGAGCT+AGG - chr5_1:12296318-12296337 None:intergenic 55.0%
CAGCCATCTCCACGCATAAC+TGG + chr5_1:12296477-12296496 Msa0718120:CDS 55.0%
GCAGTTGCTTCGGGTCTCAC+AGG - chr5_1:12293489-12293508 None:intergenic 60.0%
GAGACCCGAAGCAACTGCAG+AGG + chr5_1:12293491-12293510 Msa0718120:CDS 60.0%
TTTCGGGCCCCCCATAGTGT+TGG - chr5_1:12293577-12293596 None:intergenic 60.0%
CGCGTGCTGTCAACACTCCT+TGG - chr5_1:12293722-12293741 None:intergenic 60.0%
AGCTCAGAAGCCTCGCGGTT+GGG + chr5_1:12294253-12294272 Msa0718120:CDS 60.0%
!! GCAGCAACGCCGCCATTTTG+AGG - chr5_1:12295711-12295730 None:intergenic 60.0%
TGGTTGGAACCGGGTCTCGG+AGG + chr5_1:12294108-12294127 Msa0718120:CDS 65.0%
GGAACCGGGTCTCGGAGGAT+CGG + chr5_1:12294113-12294132 Msa0718120:CDS 65.0%
CAGCTCAGAAGCCTCGCGGT+TGG + chr5_1:12294252-12294271 Msa0718120:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 12291742 12296766 12291742 ID=Msa0718120;Name=Msa0718120
chr5_1 mRNA 12291742 12296766 12291742 ID=Msa0718120-mRNA-1;Parent=Msa0718120;Name=Msa0718120-mRNA-1;_AED=0.13;_eAED=0.13;_QI=499|1|1|1|0.71|0.5|8|207|948
chr5_1 exon 12291742 12292226 12291742 ID=Msa0718120-mRNA-1:exon:5007;Parent=Msa0718120-mRNA-1
chr5_1 exon 12292577 12292858 12292577 ID=Msa0718120-mRNA-1:exon:5008;Parent=Msa0718120-mRNA-1
chr5_1 exon 12293154 12294505 12293154 ID=Msa0718120-mRNA-1:exon:5009;Parent=Msa0718120-mRNA-1
chr5_1 exon 12294592 12294869 12294592 ID=Msa0718120-mRNA-1:exon:5010;Parent=Msa0718120-mRNA-1
chr5_1 exon 12295296 12295327 12295296 ID=Msa0718120-mRNA-1:exon:5011;Parent=Msa0718120-mRNA-1
chr5_1 exon 12295421 12295827 12295421 ID=Msa0718120-mRNA-1:exon:5012;Parent=Msa0718120-mRNA-1
chr5_1 exon 12296030 12296698 12296030 ID=Msa0718120-mRNA-1:exon:5013;Parent=Msa0718120-mRNA-1
chr5_1 exon 12296719 12296766 12296719 ID=Msa0718120-mRNA-1:exon:5014;Parent=Msa0718120-mRNA-1
chr5_1 five_prime_UTR 12291742 12292226 12291742 ID=Msa0718120-mRNA-1:five_prime_utr;Parent=Msa0718120-mRNA-1
chr5_1 five_prime_UTR 12292577 12292590 12292577 ID=Msa0718120-mRNA-1:five_prime_utr;Parent=Msa0718120-mRNA-1
chr5_1 CDS 12292591 12292858 12292591 ID=Msa0718120-mRNA-1:cds;Parent=Msa0718120-mRNA-1
chr5_1 CDS 12293154 12294505 12293154 ID=Msa0718120-mRNA-1:cds;Parent=Msa0718120-mRNA-1
chr5_1 CDS 12294592 12294869 12294592 ID=Msa0718120-mRNA-1:cds;Parent=Msa0718120-mRNA-1
chr5_1 CDS 12295296 12295327 12295296 ID=Msa0718120-mRNA-1:cds;Parent=Msa0718120-mRNA-1
chr5_1 CDS 12295421 12295827 12295421 ID=Msa0718120-mRNA-1:cds;Parent=Msa0718120-mRNA-1
chr5_1 CDS 12296030 12296539 12296030 ID=Msa0718120-mRNA-1:cds;Parent=Msa0718120-mRNA-1
chr5_1 three_prime_UTR 12296540 12296698 12296540 ID=Msa0718120-mRNA-1:three_prime_utr;Parent=Msa0718120-mRNA-1
chr5_1 three_prime_UTR 12296719 12296766 12296719 ID=Msa0718120-mRNA-1:three_prime_utr;Parent=Msa0718120-mRNA-1
Gene Sequence

>Msa0718120

ATGGTTAAAGTTTGGCTATTGGCTCTAATGATTCTCTACAATGGCTTCTCTTCAACTGTGGCTGGCATTCATAATACATCAAGGCCTGATATTGTAAATATTGGAGCTCTCTTTTCTTTCAATACTAGTGTTGGTAAGATTATAAAAATTGCTTTAGAAGCTGCGGTCGACGATGTAAATTCGGATCCAAATATTCTCGGCAAGACCAAGTTGAAGCTCTCTCTTCAGGAAGATTCTAAATATAGAGGTTTTCTAAGCATTGCTGAGGTTTTGCAGGTCATGGCTAGACACAATGTGGCAATAATTGGCCCTCATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTTCAAGTTCCTCTTATCTCATTTTCAGCTTTAGACCCTACCCTTTCTTCACTTCAATTCCCATTCTTTATCAGAACTTGTCACAGCGATCTTTATCAAATGGCTGCAATAGCAGACCTTGTTGACTACTATGGATGGAAAGAAGTCATTGCTGTATACATTGATGATGATAATGGAAGGAACGGAATTGGTGCATTAGGTGATAAGCTTGCCGAGAAGCGTTGCAGAATCTCATATAAAGCGCCTGTGAGACCCGAAGCAACTGCAGAGGAGATAACAAATGTGCTAGTTCAGGTGGCTCTTGCTGAATCAAGAGTTATAGTAGTTCACGCCAACACTATGGGGGGCCCGAAAGTGTTTAGTGTTGCGAAGAATCTTGGAATGATGGGAACTGGTTATGTATGGATAGCCACTGCTTTTCTTTCTGCTATTCTTGATATAAATAGTCCATTGCCATCTGATGCAATGGATGATATCCAAGGAGTGTTGACAGCACGCGTGCACACACCAGATTCGGAGCTTAAAAGAAAGTTTGTTTCTAAATGGCAAAACTTGACTCACGGAAATACCGATAATGGCCCTCTTGGACTTAGTTTTTTGTCTCTTTATGCATATGATACTATTTATGCTCTTGCTCATGCACTTGATGCATTTTTTAAACAAGGGAACCAAATCACATTCTCAAATGATTCAAAGTTATCTACACTACGTGGAGACAACTTGCGTCTTGATGCATTGAACATCTTCGATGGAGGAAACACATTGCGTAGGAACATTTATGAAGTTAACATGACAGGTGTGACAGGCTTGTTCAAGTATGCAGATGATAAAAACCTTGTTAATCCTACATATGAAATCATCAATGTGGTTGGAACCGGGTCTCGGAGGATCGGTTATTGGTCTAATCACTCTGGATTATCGGCTGTTTCTCCAGAAACAATTCATTCCAAACCAGGCAATAACTTCAGGGAGAGTAAAATGCTAGTCCCTGTGATTTGGCCTGGAAACACAGCTCAGAAGCCTCGCGGTTGGGTTTTTCCGAACAATGGAAGGCTATTAAGAATTGGAGTACCAATAGGCGTTAGTTACCGCCAATTTGTCTCGCAAGTACCAGGCACAGATACATTTCAAGGATTCTGCATTGATGTATTTCTTTCTGCAGTTAACCTATTGCCTTATGCTGTCCCTTATAAGTTTATTCCATATGGGGATGGTAAGAACAATCCTAGTAACACCAAGCTTGTCCGTCTGATAACAACTGGTGAATTTGACGGTGCAGTAGGTGACATTGCAATTACTACAACAAGAACAAAAATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTTTAGTGGTAGTAGCACCTGTTAGGGAGACAGAAACTAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGGATGTGGTTTGTCACAGCTCTCTTTTTCATATTAGTTGGAACTGTAGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCTAAAAAACAAATGGTTACTATTTTTTGGTTTAGCTTTTCAACAATGTTCTTTTCACATAGGGAAAATACAGTGAGCACATTTGGTCGTTGTGTGCTACTTATATGGTTATTTGTAGTACTTATAATTACTTCAAGTTACACAGCAAGTCTAACATCAATCCTCACAGTTCAACAGCTTTCTTCCCCCATTAAAGGCATTGAAAGCTTAGTAATTGGCAAAGAACCAATTGGTTACACTCAAGGTTCTTTTTCTAAAAACTATTTAATCCAAGATATTGGTATTGATGAGTCTAGGCTTGTTGCTTTAAGAACACCTGAAGAAGCTGCTAGAGCACTTGAGAAGGGTCCTCAAAATGGCGGCGTTGCTGCTTATATCGATCAACGTGCCTATATCGACATCTTCCTTGCAAGCCGGTGTAAATTTACTATTGTAGGTCAAGAGTTCACCAGAAACGGCTGGGGATTTGGCTTTCCAAGAGACTCACCATTAGCAATTGACCTATCAACTGCCATTTTGCAAATGGTAGACAATGGGGACTTACAAAGGATTCATGACAAATGGCTTTTGAGTAGAGCTTGTTTAACACAAGGTGCAAAGCTTGAAGTTCAAAGACTCAAACTAAAAAGCTTTTGGGGACTGTATGTGATCTGTGGATCAGCATGTTTGGTTGCTCTACTAATATACTTCATACGGATAATTAGACAGTATATCAAGCACCGCTCAGAGGAACTTGATTCTCCTGACCAAAACCCTAGCTCAGGATCGTCGGGTTTGAAAAAATTCATGTCCTTTGCAGATGAAAAAGAAGAGACTATTAAGAACCGATCAAAGAGAAAGAAAATGGAGAGAATCTCTTATAGAGGTAGTGAGGGAGGATCATCCTCCATCATCTCCAATAAAGATTATGATGCTCAGCCATCTCCACGCATAACTGGTTCTGTTCCTAATTGTGGAAGTGAACAAGTATTTGTCTAA
Protein sequence

>Msa0718120

MVKVWLLALMILYNGFSSTVAGIHNTSRPDIVNIGALFSFNTSVGKIIKIALEAAVDDVNSDPNILGKTKLKLSLQEDSKYRGFLSIAEVLQVMARHNVAIIGPHSSVTAHVITHIANELQVPLISFSALDPTLSSLQFPFFIRTCHSDLYQMAAIADLVDYYGWKEVIAVYIDDDNGRNGIGALGDKLAEKRCRISYKAPVRPEATAEEITNVLVQVALAESRVIVVHANTMGGPKVFSVAKNLGMMGTGYVWIATAFLSAILDINSPLPSDAMDDIQGVLTARVHTPDSELKRKFVSKWQNLTHGNTDNGPLGLSFLSLYAYDTIYALAHALDAFFKQGNQITFSNDSKLSTLRGDNLRLDALNIFDGGNTLRRNIYEVNMTGVTGLFKYADDKNLVNPTYEIINVVGTGSRRIGYWSNHSGLSAVSPETIHSKPGNNFRESKMLVPVIWPGNTAQKPRGWVFPNNGRLLRIGVPIGVSYRQFVSQVPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSNTKLVRLITTGEFDGAVGDIAITTTRTKMVDFTQPYIESGLVVVAPVRETETSALAFLAPFTPRMWFVTALFFILVGTVVWILEHRVNDEFRGPPKKQMVTIFWFSFSTMFFSHRENTVSTFGRCVLLIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIESLVIGKEPIGYTQGSFSKNYLIQDIGIDESRLVALRTPEEAARALEKGPQNGGVAAYIDQRAYIDIFLASRCKFTIVGQEFTRNGWGFGFPRDSPLAIDLSTAILQMVDNGDLQRIHDKWLLSRACLTQGAKLEVQRLKLKSFWGLYVICGSACLVALLIYFIRIIRQYIKHRSEELDSPDQNPSSGSSGLKKFMSFADEKEETIKNRSKRKKMERISYRGSEGGSSSIISNKDYDAQPSPRITGSVPNCGSEQVFV*