AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0838990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838990 MtrunA17_Chr5g0407171 96.277 779 29 0 1 779 1 779 0.0 1551
Msa0838990 MtrunA17_Chr8g0370261 72.821 780 211 1 1 779 1 780 0.0 1204
Msa0838990 MtrunA17_Chr3g0144141 58.483 778 309 5 4 779 53 818 0.0 938
Msa0838990 MtrunA17_Chr2g0322691 53.501 757 342 4 26 779 32 781 0.0 830
Msa0838990 MtrunA17_Chr8g0370281 58.273 695 275 7 94 779 1 689 0.0 822
Msa0838990 MtrunA17_Chr2g0322681 44.914 757 410 4 25 779 24 775 0.0 720
Msa0838990 MtrunA17_Chr3g0136611 34.085 798 490 21 6 779 7 792 4.84e-131 415
Msa0838990 MtrunA17_Chr3g0136621 33.745 809 482 22 1 779 13 797 8.29e-128 406
Msa0838990 MtrunA17_Chr4g0046101 30.538 799 476 23 5 780 19 761 3.42e-98 326
Msa0838990 MtrunA17_Chr2g0283231 28.799 816 482 26 1 784 11 759 7.52e-87 295
Msa0838990 MtrunA17_Chr5g0424541 28.880 786 466 26 28 780 36 761 1.68e-71 252
Msa0838990 MtrunA17_Chr2g0283241 26.581 775 476 24 27 780 32 734 1.83e-66 238
Msa0838990 MtrunA17_Chr2g0283251 26.429 787 482 24 27 787 33 748 1.63e-65 233
Msa0838990 MtrunA17_Chr5g0424521 28.116 722 427 23 94 780 3 667 4.76e-65 230
Msa0838990 MtrunA17_Chr2g0283261 26.813 772 468 25 33 780 40 738 6.68e-65 233
Msa0838990 MtrunA17_Chr7g0230081 27.785 781 460 29 28 780 48 752 1.25e-63 230
Msa0838990 MtrunA17_Chr7g0230091 31.047 554 298 19 242 780 6 490 3.82e-63 224
Msa0838990 MtrunA17_Chr2g0283211 27.986 586 322 18 208 781 32 529 4.89e-56 201
Msa0838990 MtrunA17_Chr6g0467751 31.534 352 217 9 472 806 46 390 8.75e-41 157
Msa0838990 MtrunA17_Chr5g0424621 26.582 553 336 18 28 555 36 543 8.36e-34 137
Msa0838990 MtrunA17_Chr8g0370291 40.708 113 64 2 1 112 1 111 1.96e-20 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838990 AT3G51480.3 58.355 778 311 4 5 782 3 767 0.0 964
Msa0838990 AT3G51480.4 58.194 775 311 4 5 779 3 764 0.0 959
Msa0838990 AT3G51480.1 58.194 775 311 4 5 779 3 764 0.0 959
Msa0838990 AT1G42540.1 57.707 785 315 8 1 779 1 774 0.0 925
Msa0838990 AT1G42540.4 57.707 785 315 8 1 779 1 774 0.0 925
Msa0838990 AT1G42540.2 57.707 785 315 8 1 779 1 774 0.0 925
Msa0838990 AT3G51480.2 59.913 686 263 3 94 779 1 674 0.0 877
Msa0838990 AT4G35290.6 54.384 787 337 7 5 783 3 775 0.0 869
Msa0838990 AT4G35290.4 54.278 783 336 7 5 779 3 771 0.0 863
Msa0838990 AT4G35290.3 54.278 783 336 7 5 779 3 771 0.0 863
Msa0838990 AT4G35290.1 54.278 783 336 7 5 779 3 771 0.0 863
Msa0838990 AT4G35290.2 54.278 783 336 7 5 779 3 771 0.0 863
Msa0838990 AT4G35290.5 54.278 783 336 7 5 779 3 771 0.0 863
Msa0838990 AT2G17260.1 54.487 780 339 8 5 779 7 775 0.0 844
Msa0838990 AT1G05200.6 54.449 753 335 3 28 779 57 802 0.0 838
Msa0838990 AT1G05200.2 54.449 753 335 3 28 779 57 802 0.0 838
Msa0838990 AT1G05200.7 54.509 754 335 3 28 780 57 803 0.0 838
Msa0838990 AT1G05200.3 54.509 754 335 3 28 780 57 803 0.0 838
Msa0838990 AT1G05200.1 54.449 753 335 3 28 779 57 802 0.0 838
Msa0838990 AT2G32390.5 52.336 749 355 2 32 779 48 795 0.0 800
Msa0838990 AT2G32390.2 53.478 690 320 1 91 779 4 693 0.0 758
Msa0838990 AT2G32390.1 53.266 689 321 1 92 779 49 737 0.0 754
Msa0838990 AT1G42540.3 55.267 655 273 9 1 646 1 644 0.0 735
Msa0838990 AT2G32390.6 51.369 621 301 1 32 652 48 667 0.0 677
Msa0838990 AT1G05200.4 52.496 621 288 2 28 648 57 670 0.0 671
Msa0838990 AT2G32390.4 50.485 618 305 1 32 649 48 664 0.0 663
Msa0838990 AT2G32390.3 50.485 618 305 1 32 649 48 664 0.0 663
Msa0838990 AT2G32400.1 43.989 757 409 7 25 779 24 767 0.0 659
Msa0838990 AT1G05200.5 52.059 607 284 2 28 634 57 656 0.0 649
Msa0838990 AT2G32390.7 49.917 603 301 1 32 634 48 649 0.0 639
Msa0838990 AT5G11210.3 36.441 708 408 15 90 781 20 701 1.75e-141 435
Msa0838990 AT2G24720.1 35.125 763 456 17 32 780 32 769 3.58e-141 440
Msa0838990 AT5G11210.7 36.312 705 407 15 93 781 15 693 5.06e-141 433
Msa0838990 AT5G11210.6 36.312 705 407 15 93 781 15 693 5.06e-141 433
Msa0838990 AT5G11210.8 36.312 705 407 15 93 781 15 693 6.05e-141 433
Msa0838990 AT5G11210.10 34.465 766 459 16 32 781 37 775 8.27e-141 435
Msa0838990 AT5G11210.2 34.465 766 459 16 32 781 37 775 8.40e-141 436
Msa0838990 AT5G11210.4 34.465 766 459 16 32 781 37 775 8.40e-141 436
Msa0838990 AT5G11210.1 35.302 728 429 15 68 779 14 715 1.29e-138 431
Msa0838990 AT5G27100.1 34.902 765 448 19 32 780 32 762 1.87e-138 432
Msa0838990 AT5G11180.2 34.478 757 472 12 32 779 36 777 2.93e-138 434
Msa0838990 AT5G11210.9 36.131 703 407 15 93 779 15 691 3.39e-138 430
Msa0838990 AT5G11210.5 34.293 764 459 16 32 779 37 773 4.81e-138 432
Msa0838990 AT4G31710.1 34.474 760 452 18 31 780 31 754 2.90e-135 424
Msa0838990 AT2G29100.2 35.535 757 446 20 32 779 32 755 1.31e-132 418
Msa0838990 AT2G29100.1 35.535 757 446 20 32 779 30 753 1.51e-132 418
Msa0838990 AT4G31710.2 34.079 760 448 18 31 780 54 770 2.95e-132 416
Msa0838990 AT2G24710.2 33.158 760 479 14 43 792 66 806 3.75e-132 413
Msa0838990 AT2G29120.1 33.114 761 465 18 32 780 39 767 1.02e-131 416
Msa0838990 AT2G24710.1 33.333 747 470 13 43 780 42 769 1.48e-130 411
Msa0838990 AT2G24710.3 33.601 747 468 14 43 780 66 793 2.21e-130 412
Msa0838990 AT2G29110.1 34.305 755 463 15 32 779 33 761 3.18e-126 401
Msa0838990 AT2G29110.2 34.305 755 463 15 32 779 34 762 3.57e-126 401
Msa0838990 AT5G11180.1 30.952 756 439 14 32 779 36 716 9.12e-103 338
Msa0838990 AT5G48400.1 28.999 769 462 23 32 783 40 741 1.23e-87 293
Msa0838990 AT5G48410.2 28.384 761 472 22 32 783 42 738 7.32e-86 289
Msa0838990 AT5G48400.2 28.643 796 476 25 32 804 40 766 1.21e-85 291
Msa0838990 AT3G07520.1 28.084 762 472 20 32 779 46 745 1.81e-84 288
Msa0838990 AT5G48410.1 28.005 782 488 23 32 804 42 757 3.08e-84 287
Msa0838990 AT3G04110.3 28.198 688 425 18 6 683 4 632 6.57e-75 259
Msa0838990 AT3G04110.1 28.198 688 425 18 6 683 4 632 1.57e-74 259
Msa0838990 AT5G48410.4 26.471 782 473 23 32 804 42 730 1.87e-70 248
Msa0838990 AT5G48410.3 26.343 782 470 24 32 804 42 726 2.48e-67 239
Msa0838990 AT3G04110.2 26.308 688 410 18 6 683 4 604 1.49e-61 222
Msa0838990 AT5G11210.11 40.000 265 147 5 522 779 6 265 1.85e-56 199

Find 215 sgRNAs with CRISPR-Local

Find 636 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCAGAAGTTGGATATTT+TGG 0.108501 5_4:-13600902 None:intergenic
TGAAAACATGTGAGAAATTT+TGG 0.147502 5_4:-13600821 None:intergenic
GGTTTGGAATGAATTGTTTC+TGG 0.166017 5_4:-13603105 None:intergenic
TAAGCTTTCAATGCCTTTAA+TGG 0.174089 5_4:-13604479 None:intergenic
TGGAACTGTAGTTTGGATTT+TGG 0.188541 5_4:+13603718 Msa0838990:CDS
TGTTCTTAATTGTGCTGTTC+AGG 0.193904 5_4:+13604944 Msa0838990:three_prime_UTR
ACAATTTCTTGCAACAAAAT+TGG 0.203933 5_4:+13604784 Msa0838990:CDS
TCGCAACACTAAACACTTTC+GGG 0.205231 5_4:-13602522 None:intergenic
TACAAATCCCCAGCCGTTTC+TGG 0.207905 5_4:-13604740 None:intergenic
TCTTTCTTTGTTCCTACTTT+TGG 0.219865 5_4:+13601068 Msa0838990:five_prime_UTR
TTTAAGCATTGTGGAGAAAA+TGG 0.225840 5_4:-13601044 None:intergenic
AACCACATCCTTGGTGTAAA+TGG 0.226841 5_4:-13603668 None:intergenic
GGCTTCTGAGCTGTGTTTCC+AGG 0.230286 5_4:-13603174 None:intergenic
TTGGTCTTGCCGAGAATATT+TGG 0.235404 5_4:-13601709 None:intergenic
GGCATTGAAAGCTTAGTAAT+TGG 0.241024 5_4:+13604487 Msa0838990:CDS
AAAGAAAGTTTGTTTCTAAA+TGG 0.241296 5_4:+13602698 Msa0838990:CDS
CCATATGGAATAAACTTATA+AGG 0.245835 5_4:-13603360 None:intergenic
TTGTAGGACTTCAGAGAATT+TGG 0.249453 5_4:-13604881 None:intergenic
CCTTATAAGTTTATTCCATA+TGG 0.280340 5_4:+13603360 Msa0838990:CDS
GCTCCAATATTTACAATATC+AGG 0.286846 5_4:-13601607 None:intergenic
AACTATTTAATCCAAGATAT+TGG 0.289008 5_4:+13604550 Msa0838990:CDS
CCTGAAGTTATTGCCTGGTT+TGG 0.296388 5_4:-13603121 None:intergenic
CCGATCAAAGAGAAAGAAAA+TGG 0.305618 5_4:+13605322 Msa0838990:three_prime_UTR
AAGCTTTCAATGCCTTTAAT+GGG 0.306277 5_4:-13604478 None:intergenic
TTCGCAACACTAAACACTTT+CGG 0.306463 5_4:-13602523 None:intergenic
ATCTCCTCTGCAGTTGCTTC+GGG 0.310294 5_4:-13602427 None:intergenic
AGGCCTGATATTGTAAATAT+TGG 0.310296 5_4:+13601604 Msa0838990:CDS
CATCAACCATGGTTAAAGTT+TGG 0.314545 5_4:+13601515 Msa0838990:exon
AAGACATACCTTAGAGCTTC+AGG 0.319955 5_4:-13601145 None:intergenic
AGACACAATGTGGCAATAAT+TGG 0.321739 5_4:+13602103 Msa0838990:CDS
CAAGTTGAAGCTCTCTCTTC+AGG 0.325134 5_4:+13601729 Msa0838990:CDS
TGAGATTCTGCAACGCTTCT+CGG 0.332145 5_4:-13602386 None:intergenic
CATGGTTAAAGTTTGGCTAT+TGG 0.335807 5_4:+13601522 Msa0838990:exon
ATTGTCTACCATTTGCAAAA+TGG 0.336897 5_4:-13605009 None:intergenic
AAATGCTATTCCATGTGATT+TGG 0.338197 5_4:+13603151 Msa0838990:CDS
TATCTCCTCTGCAGTTGCTT+CGG 0.342196 5_4:-13602428 None:intergenic
CTAGTTTCTGTCTCCCTAAC+AGG 0.342346 5_4:-13603626 None:intergenic
TATTAGTTGGAACTGTAGTT+TGG 0.343379 5_4:+13603711 Msa0838990:CDS
ACGATCCTGAGCTAGGGTTT+TGG 0.345127 5_4:-13605244 None:intergenic
ATCATCAATGTGGTTGGAAC+CGG 0.347020 5_4:+13603030 Msa0838990:CDS
TAGTGGTAGTAGCACCTGTT+AGG 0.348845 5_4:+13603612 Msa0838990:CDS
ACTAAACCAGACTCAATATA+TGG 0.349812 5_4:-13603593 None:intergenic
GTCGTTGTGTGCTACTTATA+TGG 0.356677 5_4:+13604377 Msa0838990:CDS
TTTAGTGTTGCGAAGAATCT+TGG 0.359196 5_4:+13602532 Msa0838990:CDS
AGTAGTTCACGCCAACACTA+TGG 0.359304 5_4:+13602495 Msa0838990:CDS
AGTGCTCTAGCAGCTTCTTC+AGG 0.368684 5_4:-13604607 None:intergenic
GTTCTTAATTGTGCTGTTCA+GGG 0.370054 5_4:+13604945 Msa0838990:three_prime_UTR
GTCTAATCACTCTGGATTAT+CGG 0.372751 5_4:+13603074 Msa0838990:CDS
AGCTCAGAAGCCTCGCGGTT+GGG 0.374479 5_4:+13603185 Msa0838990:CDS
TGGTGTAAATGGAGCCAAAA+AGG 0.374511 5_4:-13603657 None:intergenic
GAAAATACAGTGAGCACATT+TGG 0.377522 5_4:+13604355 Msa0838990:CDS
GCAGACCTTGTTGACTACTA+TGG 0.377656 5_4:+13602286 Msa0838990:CDS
CTTGAGAAGGGTCCTCAAAA+TGG 0.382532 5_4:+13604628 Msa0838990:CDS
ACTCACGGAAATACCGATAA+TGG 0.387132 5_4:+13602730 Msa0838990:CDS
CTTATAAGTTTATTCCATAT+GGG 0.389021 5_4:+13603361 Msa0838990:CDS
CGGTGTAAATTTACTATTGT+AGG 0.389253 5_4:+13604706 Msa0838990:CDS
CATTCACAATTCTAAGCTAC+TGG 0.391368 5_4:+13601100 Msa0838990:five_prime_UTR
CAGGAAGATTCTAAATATAG+AGG 0.393980 5_4:+13601748 Msa0838990:CDS
CTTAATAGCCTTCCATTGTT+CGG 0.398580 5_4:-13603213 None:intergenic
GGTCTCGGAGGATCGGTTAT+TGG 0.400571 5_4:+13603052 Msa0838990:CDS
AATGGAAGGCTATTAAGAAT+TGG 0.401016 5_4:+13603219 Msa0838990:CDS
ATATCCTTCCTGAAGCTCTA+AGG 0.401191 5_4:+13601137 Msa0838990:five_prime_UTR
GATAACAAATGTGCTAGTTC+AGG 0.402634 5_4:+13602447 Msa0838990:CDS
ACTCAGCCATATATTGAGTC+TGG 0.404527 5_4:+13603587 Msa0838990:CDS
CTCTCCCTGAAGTTATTGCC+TGG 0.405725 5_4:-13603126 None:intergenic
CCAAACCAGGCAATAACTTC+AGG 0.406252 5_4:+13603121 Msa0838990:CDS
GTTTCATTATTTCTTGACTT+TGG 0.413832 5_4:-13600699 None:intergenic
AGGAACGGAATTGGTGCATT+AGG 0.414414 5_4:+13602352 Msa0838990:CDS
ACTCATCAATACCAATATCT+TGG 0.416136 5_4:-13604561 None:intergenic
TACAAAGGATTCATGACAAA+TGG 0.421966 5_4:+13605039 Msa0838990:three_prime_UTR
CGGACAAGCTCGGTGTTACT+AGG 0.423128 5_4:-13603399 None:intergenic
GGCTTCTCTTCAACTGTGGC+TGG 0.425877 5_4:+13601565 Msa0838990:CDS
CATATGGAATAAACTTATAA+GGG 0.429868 5_4:-13603359 None:intergenic
TTTGCAAAATGGCAGTTGAT+AGG 0.431842 5_4:-13604998 None:intergenic
TGGCGGTAACTAACGCCTAT+TGG 0.432370 5_4:-13603246 None:intergenic
TTACGGACAAGAGGGACAAT+TGG 0.433272 5_4:-13600861 None:intergenic
AATCATTTGAGAATGTGATT+TGG 0.434174 5_4:-13602843 None:intergenic
GTAATTGGCAAAGAACCAAT+TGG 0.435302 5_4:+13604502 Msa0838990:CDS
GATCTGTGGATCAGCATGTT+TGG 0.435879 5_4:+13605145 Msa0838990:three_prime_UTR
GTATACATTGATGATGATAA+TGG 0.436911 5_4:+13602328 Msa0838990:CDS
AACTTATAAGGGACAGCATA+AGG 0.436939 5_4:-13603348 None:intergenic
TGACAAGTTCTGATAAAGAA+TGG 0.437045 5_4:-13602235 None:intergenic
CTGGTACTTGCGAGACAAAT+TGG 0.437291 5_4:-13603266 None:intergenic
CAACTTCTGAGGAGTGTGAT+TGG 0.440361 5_4:+13600912 Msa0838990:five_prime_UTR
CGCGTGCTGTCAACACTCCT+TGG 0.443293 5_4:-13602651 None:intergenic
ATATATTGAGTCTGGTTTAG+TGG 0.447740 5_4:+13603595 Msa0838990:CDS
TGCGGTCGACGATGTAAATT+CGG 0.449520 5_4:+13601684 Msa0838990:CDS
AAGTCCAAGAGGGCCATTAT+CGG 0.451799 5_4:-13602743 None:intergenic
ATTGCTAATGGTGAGTCTCT+TGG 0.452500 5_4:-13604972 None:intergenic
CAATTTGTCTCGCAAGTACC+AGG 0.453271 5_4:+13603267 Msa0838990:CDS
AAGGGACAGCATAAGGCAAT+AGG 0.454426 5_4:-13603341 None:intergenic
TCACAGCGATCTTTATCAAA+TGG 0.455581 5_4:+13602255 Msa0838990:CDS
GAAAGTGGAGAAGTTAATCA+AGG 0.456253 5_4:-13601007 None:intergenic
GGAGACAGAAACTAGTGCTT+TGG 0.456942 5_4:+13603634 Msa0838990:CDS
AATCTTGGAATGATGGGAAC+TGG 0.458661 5_4:+13602547 Msa0838990:CDS
GAACCTTGAGTGTAACCAAT+TGG 0.458763 5_4:-13604517 None:intergenic
CTGAAGAGAGAGCTTCAACT+TGG 0.460309 5_4:-13601728 None:intergenic
TTGTTCTTACCATCCCCATA+TGG 0.461876 5_4:-13603375 None:intergenic
TTAAGAATTGGAGTACCAAT+AGG 0.462054 5_4:+13603231 Msa0838990:CDS
AATACCGATAATGGCCCTCT+TGG 0.465354 5_4:+13602739 Msa0838990:CDS
AACCCTAGCTCAGGATCGTC+GGG 0.470053 5_4:+13605248 Msa0838990:three_prime_UTR
CTATTCCATGTGATTTGGCC+TGG 0.474979 5_4:+13603156 Msa0838990:CDS
ACGCGTGCACACACCAGATT+CGG 0.475897 5_4:+13602669 Msa0838990:CDS
CCAGGCACAGATACATTTCA+AGG 0.476169 5_4:+13603285 Msa0838990:CDS
CTTGTCCGTCTGATAACAAC+TGG 0.476371 5_4:+13603414 Msa0838990:CDS
ATGTGGTTGGAACCGGGTCT+CGG 0.476531 5_4:+13603037 Msa0838990:CDS
TGCAAGGAAGATGTCGATAT+AGG 0.479803 5_4:-13604680 None:intergenic
CTTAGAATTGTGAATGAAGA+AGG 0.482617 5_4:-13601093 None:intergenic
CAATCACACTCCTCAGAAGT+TGG 0.482973 5_4:-13600911 None:intergenic
GCAGTTGCTTCGGGTCTCAC+AGG 0.488039 5_4:-13602418 None:intergenic
GACAAGTTCTGATAAAGAAT+GGG 0.488714 5_4:-13602234 None:intergenic
GTAGTTCACGCCAACACTAT+GGG 0.489805 5_4:+13602496 Msa0838990:CDS
ACATTGATGATTTCATATGT+AGG 0.491964 5_4:-13603018 None:intergenic
GGTCAAGAGTTCACCAGAAA+CGG 0.492133 5_4:+13604727 Msa0838990:CDS
TGATGGGAACTGGTTATGTA+TGG 0.493409 5_4:+13602557 Msa0838990:CDS
TGGGAATTGAAGTGAAGAAA+GGG 0.497041 5_4:-13602215 None:intergenic
CTCCATTTACACCAAGGATG+TGG 0.498261 5_4:+13603666 Msa0838990:CDS
AGCTGCTAGAGCACTTGAGA+AGG 0.498564 5_4:+13604615 Msa0838990:CDS
AAAGCTGAAAATGAGATAAG+AGG 0.499953 5_4:-13602184 None:intergenic
AAACCCGACGATCCTGAGCT+AGG 0.500062 5_4:-13605251 None:intergenic
GATAATGGAAGGAACGGAAT+TGG 0.500398 5_4:+13602343 Msa0838990:CDS
TAAATTTACACCGGCTTGCA+AGG 0.500407 5_4:-13604696 None:intergenic
AATTCGGATCCAAATATTCT+CGG 0.501823 5_4:+13601700 Msa0838990:CDS
GAAAATGGACAAGGCACTAA+AGG 0.505355 5_4:-13601029 None:intergenic
GTTGATAGGTCAATTGCTAA+TGG 0.508345 5_4:-13604984 None:intergenic
GATAATTGTCACTGTGAAAG+TGG 0.508548 5_4:-13600784 None:intergenic
AAGAGTTCACCAGAAACGGC+TGG 0.511076 5_4:+13604731 Msa0838990:CDS
AGTGGTAGTAGCACCTGTTA+GGG 0.511309 5_4:+13603613 Msa0838990:CDS
CCTTGAAATGTATCTGTGCC+TGG 0.511367 5_4:-13603285 None:intergenic
CTCTACTAATATACTTCATA+CGG 0.511636 5_4:+13605171 Msa0838990:three_prime_UTR
TATGAAATCATCAATGTGGT+TGG 0.513116 5_4:+13603024 Msa0838990:CDS
TGCGAAGAATCTTGGAATGA+TGG 0.515559 5_4:+13602540 Msa0838990:CDS
ATGGGAATTGAAGTGAAGAA+AGG 0.515929 5_4:-13602216 None:intergenic
AAGAAAGAGTTTAAGCATTG+TGG 0.517701 5_4:-13601053 None:intergenic
GTTAACATGACAGGTGTGAC+AGG 0.520717 5_4:+13602958 Msa0838990:CDS
GGAACCGGGTCTCGGAGGAT+CGG 0.535259 5_4:+13603045 Msa0838990:CDS
GGTTATTGGTCTAATCACTC+TGG 0.537000 5_4:+13603066 Msa0838990:CDS
AGAGTTCACCAGAAACGGCT+GGG 0.541125 5_4:+13604732 Msa0838990:CDS
CAATGGCTTCTCTTCAACTG+TGG 0.542234 5_4:+13601561 Msa0838990:CDS
GAACCAATTGGTTACACTCA+AGG 0.542568 5_4:+13604514 Msa0838990:CDS
AACCCGACGATCCTGAGCTA+GGG 0.542874 5_4:-13605250 None:intergenic
CCTGACCAAAACCCTAGCTC+AGG 0.544007 5_4:+13605239 Msa0838990:three_prime_UTR
AAGTTTATTCCATATGGGGA+TGG 0.544461 5_4:+13603366 Msa0838990:CDS
CAGGAATTTGACGGTGCAGT+AGG 0.544564 5_4:+13603521 Msa0838990:intron
CAAACCAGGCAATAACTTCA+GGG 0.551751 5_4:+13603122 Msa0838990:CDS
AAACCCTAGCTCAGGATCGT+CGG 0.552997 5_4:+13605247 Msa0838990:three_prime_UTR
ATAAAATTCCAGAATCATGC+TGG 0.553415 5_4:-13604846 None:intergenic
GCTGCTAGAGCACTTGAGAA+GGG 0.555149 5_4:+13604616 Msa0838990:CDS
TGGGGACTGTATGTGATCTG+TGG 0.555651 5_4:+13605131 Msa0838990:three_prime_UTR
CAGCTCAGAAGCCTCGCGGT+TGG 0.558518 5_4:+13603184 Msa0838990:CDS
GACAAGGCACTAAAGGAAAG+TGG 0.558982 5_4:-13601022 None:intergenic
ACCTTGTTGACTACTATGGA+TGG 0.559074 5_4:+13602290 Msa0838990:CDS
TTATAAGTTTATTCCATATG+GGG 0.559101 5_4:+13603362 Msa0838990:CDS
ATTTATGAAGTTAACATGAC+AGG 0.559107 5_4:+13602949 Msa0838990:CDS
TGAGCTGTTACAGAACTATG+AGG 0.559881 5_4:-13602127 None:intergenic
TCATCAATGTGGTTGGAACC+GGG 0.562645 5_4:+13603031 Msa0838990:CDS
TCCATTGCCATCTGATGCAA+TGG 0.562987 5_4:+13602621 Msa0838990:CDS
AAAGTGGAGAAGTTAATCAA+GGG 0.564231 5_4:-13601006 None:intergenic
GATGATGATAATGGAAGGAA+CGG 0.567888 5_4:+13602337 Msa0838990:CDS
AGCTTTCAATGCCTTTAATG+GGG 0.571429 5_4:-13604477 None:intergenic
GCTGTGACAAACCACATCCT+TGG 0.572660 5_4:-13603677 None:intergenic
TGTTTCCAGGCCAAATCACA+TGG 0.575127 5_4:-13603161 None:intergenic
GCTCTAATGATTCTCTGCAA+TGG 0.576486 5_4:+13601544 Msa0838990:CDS
GATGCATTGAACATCTTCGA+TGG 0.577411 5_4:+13602904 Msa0838990:CDS
ATATTGGTATTGATGAGTCT+AGG 0.579574 5_4:+13604566 Msa0838990:CDS
TCGACATCTTCCTTGCAAGC+CGG 0.580299 5_4:+13604686 Msa0838990:CDS
AATAGCAGAAAGAAAAGCAG+TGG 0.580483 5_4:-13602584 None:intergenic
ATATCATCCATTGCATCAGA+TGG 0.582487 5_4:-13602628 None:intergenic
CTGGCATTCATAATACATCA+AGG 0.584689 5_4:+13601584 Msa0838990:CDS
GCGAAGAATCTTGGAATGAT+GGG 0.585664 5_4:+13602541 Msa0838990:CDS
CAATAGCCAAACTTTAACCA+TGG 0.590621 5_4:-13601521 None:intergenic
AACAAATGTGCTAGTTCAGG+TGG 0.591116 5_4:+13602450 Msa0838990:CDS
TATAGGTAAATCATCAACCA+TGG 0.591718 5_4:+13601504 Msa0838990:intron
ATGAAGAAGGAACCAAAAGT+AGG 0.597085 5_4:-13601080 None:intergenic
TCCATTGCATCAGATGGCAA+TGG 0.602552 5_4:-13602622 None:intergenic
AAATGGCAAAACTTGACTCA+CGG 0.603058 5_4:+13602715 Msa0838990:CDS
AGTAGAGCTTGTTTAACACA+AGG 0.608489 5_4:+13605068 Msa0838990:three_prime_UTR
GAAACACAAACATCTTGTGA+TGG 0.609914 5_4:-13600727 None:intergenic
ATTGAAGTGAAGAAAGGGTA+GGG 0.610945 5_4:-13602210 None:intergenic
AGGGTGAATGATGAATTTAG+AGG 0.611358 5_4:+13603746 Msa0838990:CDS
TGTTATCAGACGGACAAGCT+CGG 0.614402 5_4:-13603409 None:intergenic
GAGTTCACCAGAAACGGCTG+GGG 0.618854 5_4:+13604733 Msa0838990:CDS
ATAACCGATCCTCCGAGACC+CGG 0.622653 5_4:-13603049 None:intergenic
AATTGAAGTGAAGAAAGGGT+AGG 0.623429 5_4:-13602211 None:intergenic
TCACACCAGTTGTTATCAGA+CGG 0.627621 5_4:-13603419 None:intergenic
GCTTTCAATGCCTTTAATGG+GGG 0.630168 5_4:-13604476 None:intergenic
CTACAATAGTAAATTTACAC+CGG 0.630833 5_4:-13604705 None:intergenic
ACATTGATGATGATAATGGA+AGG 0.631961 5_4:+13602332 Msa0838990:CDS
TAGACAATGGGGACTTACAA+AGG 0.633097 5_4:+13605024 Msa0838990:three_prime_UTR
TTTCATATGTAGGATTAACA+AGG 0.639032 5_4:-13603008 None:intergenic
CATTGTGGAGAAAATGGACA+AGG 0.642314 5_4:-13601038 None:intergenic
GTACTTGCGAGACAAATTGG+CGG 0.642717 5_4:-13603263 None:intergenic
GCATTGAACATCTTCGATGG+AGG 0.646368 5_4:+13602907 Msa0838990:CDS
TTGGAATGAATTGTTTCTGG+AGG 0.646837 5_4:-13603102 None:intergenic
TCCATCCATAGTAGTCAACA+AGG 0.646917 5_4:-13602291 None:intergenic
GATGCAATGGATGATATCCA+AGG 0.647811 5_4:+13602634 Msa0838990:CDS
GAGCTGTTACAGAACTATGA+GGG 0.647851 5_4:-13602126 None:intergenic
GTATATCAAGCACCGCTCAG+AGG 0.649063 5_4:+13605205 Msa0838990:three_prime_UTR
ATGGAGGAAACACATTGCGT+AGG 0.650471 5_4:+13602923 Msa0838990:CDS
GCCAAAATATCCAACTTCTG+AGG 0.651090 5_4:+13600901 Msa0838990:five_prime_UTR
TAGTTCACGCCAACACTATG+GGG 0.654856 5_4:+13602497 Msa0838990:CDS
GAAACAATTCATTCCAAACC+AGG 0.659152 5_4:+13603108 Msa0838990:CDS
CATACCTTAGAGCTTCAGGA+AGG 0.662211 5_4:-13601141 None:intergenic
GAGACCCGAAGCAACTGCAG+AGG 0.663454 5_4:+13602423 Msa0838990:CDS
TTTGCAAATGGTAGACAATG+GGG 0.667655 5_4:+13605013 Msa0838990:three_prime_UTR
TACATATGAAATCATCAATG+TGG 0.671358 5_4:+13603020 Msa0838990:CDS
AGTTCACGCCAACACTATGG+GGG 0.676435 5_4:+13602498 Msa0838990:CDS
GAGAAGGGTCCTCAAAATGG+CGG 0.676519 5_4:+13604631 Msa0838990:CDS
TGGTTGGAACCGGGTCTCGG+AGG 0.677436 5_4:+13603040 Msa0838990:CDS
AAGAAAGCTGTTGAACTGTG+AGG 0.698394 5_4:-13604453 None:intergenic
GGTCATGGCTAGACACAATG+TGG 0.699792 5_4:+13602093 Msa0838990:CDS
GTTCACGCCAACACTATGGG+GGG 0.717244 5_4:+13602499 Msa0838990:CDS
AACACAGCTCAGAAGCCTCG+CGG 0.732843 5_4:+13603180 Msa0838990:CDS
TCAAAGTTATCTACACTACG+TGG 0.734230 5_4:+13602865 Msa0838990:CDS
GAGAATCAAGTTCCTCTGAG+CGG 0.762406 5_4:-13605217 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTTTTTTTACTCTATA+TGG - chr5_4:13600965-13600984 None:intergenic 15.0%
!!! CTTTATGTTTATTGTTTTAT+AGG + chr5_4:13601487-13601506 Msa0838990:intron 15.0%
!!! TTTAAGTCAAATCTTTTTTA+TGG - chr5_4:13601958-13601977 None:intergenic 15.0%
!!! AAATTGATTTTAACATGTTT+AGG + chr5_4:13603944-13603963 Msa0838990:intron 15.0%
!!! TCACATTAATTCTTTTAAAT+TGG - chr5_4:13604810-13604829 None:intergenic 15.0%
!!! TGGAATTTTATTAATTTCAT+GGG + chr5_4:13604858-13604877 Msa0838990:three_prime_UTR 15.0%
!!! AAGTTTTTTTTTACTCTATA+TGG - chr5_4:13600965-13600984 None:intergenic 15.0%
!!! CTTTATGTTTATTGTTTTAT+AGG + chr5_4:13601487-13601506 Msa0838990:intron 15.0%
!!! TTTAAGTCAAATCTTTTTTA+TGG - chr5_4:13601958-13601977 None:intergenic 15.0%
!!! AAATTGATTTTAACATGTTT+AGG + chr5_4:13603944-13603963 Msa0838990:intron 15.0%
!!! TCACATTAATTCTTTTAAAT+TGG - chr5_4:13604810-13604829 None:intergenic 15.0%
!!! TGGAATTTTATTAATTTCAT+GGG + chr5_4:13604858-13604877 Msa0838990:three_prime_UTR 15.0%
!!! TTTTTTATTAGCAGATACTT+TGG + chr5_4:13601254-13601273 Msa0838990:intron 20.0%
!!! AAATCTTTTTTATGGTCTAA+AGG - chr5_4:13601950-13601969 None:intergenic 20.0%
!!! ATAAGCGTAAATTTTTTACA+TGG - chr5_4:13602023-13602042 None:intergenic 20.0%
!!! AAAGAAAGTTTGTTTCTAAA+TGG + chr5_4:13602698-13602717 Msa0838990:CDS 20.0%
!!! TTGATGCATTTTTTAAACAA+GGG + chr5_4:13602818-13602837 Msa0838990:CDS 20.0%
!! CATATGGAATAAACTTATAA+GGG - chr5_4:13603362-13603381 None:intergenic 20.0%
!! CTTATAAGTTTATTCCATAT+GGG + chr5_4:13603361-13603380 Msa0838990:CDS 20.0%
!! TTATAAGTTTATTCCATATG+GGG + chr5_4:13603362-13603381 Msa0838990:CDS 20.0%
!!! ATCATGTCAATAATCTTTTA+TGG + chr5_4:13603444-13603463 Msa0838990:intron 20.0%
!!! TGATTTTTGAATTTTCATAC+AGG + chr5_4:13603502-13603521 Msa0838990:intron 20.0%
!!! ATAGTAACCATTTGTTTTTT+AGG - chr5_4:13603776-13603795 None:intergenic 20.0%
!!! AACAAATGGTTACTATTTTT+TGG + chr5_4:13603780-13603799 Msa0838990:CDS 20.0%
!! GTTTAAAAAAGGTTCAATAT+TGG - chr5_4:13603844-13603863 None:intergenic 20.0%
!! TTAAAACTAAAATTCACGTT+TGG - chr5_4:13604029-13604048 None:intergenic 20.0%
!!! GGTTCTGAATAAATTTATTT+TGG - chr5_4:13604123-13604142 None:intergenic 20.0%
!! AACTATTTAATCCAAGATAT+TGG + chr5_4:13604550-13604569 Msa0838990:CDS 20.0%
!!! CTGGAATTTTATTAATTTCA+TGG + chr5_4:13604857-13604876 Msa0838990:three_prime_UTR 20.0%
!!! TTTTTTATTAGCAGATACTT+TGG + chr5_4:13601254-13601273 Msa0838990:intron 20.0%
!!! AAATCTTTTTTATGGTCTAA+AGG - chr5_4:13601950-13601969 None:intergenic 20.0%
!!! ATAAGCGTAAATTTTTTACA+TGG - chr5_4:13602023-13602042 None:intergenic 20.0%
!!! AAAGAAAGTTTGTTTCTAAA+TGG + chr5_4:13602698-13602717 Msa0838990:CDS 20.0%
!!! TTGATGCATTTTTTAAACAA+GGG + chr5_4:13602818-13602837 Msa0838990:CDS 20.0%
!! CATATGGAATAAACTTATAA+GGG - chr5_4:13603362-13603381 None:intergenic 20.0%
!! CTTATAAGTTTATTCCATAT+GGG + chr5_4:13603361-13603380 Msa0838990:CDS 20.0%
!! TTATAAGTTTATTCCATATG+GGG + chr5_4:13603362-13603381 Msa0838990:CDS 20.0%
!!! ATCATGTCAATAATCTTTTA+TGG + chr5_4:13603444-13603463 Msa0838990:intron 20.0%
!!! TGATTTTTGAATTTTCATAC+AGG + chr5_4:13603502-13603521 Msa0838990:intron 20.0%
!!! ATAGTAACCATTTGTTTTTT+AGG - chr5_4:13603776-13603795 None:intergenic 20.0%
!!! AACAAATGGTTACTATTTTT+TGG + chr5_4:13603780-13603799 Msa0838990:CDS 20.0%
!! GTTTAAAAAAGGTTCAATAT+TGG - chr5_4:13603844-13603863 None:intergenic 20.0%
!! TTAAAACTAAAATTCACGTT+TGG - chr5_4:13604029-13604048 None:intergenic 20.0%
!!! GGTTCTGAATAAATTTATTT+TGG - chr5_4:13604123-13604142 None:intergenic 20.0%
!! AACTATTTAATCCAAGATAT+TGG + chr5_4:13604550-13604569 Msa0838990:CDS 20.0%
!!! CTGGAATTTTATTAATTTCA+TGG + chr5_4:13604857-13604876 Msa0838990:three_prime_UTR 20.0%
!! GTTTCATTATTTCTTGACTT+TGG - chr5_4:13600702-13600721 None:intergenic 25.0%
!! TGAAAACATGTGAGAAATTT+TGG - chr5_4:13600824-13600843 None:intergenic 25.0%
!! CTATATGGTGTTGAAAAATA+TGG - chr5_4:13600950-13600969 None:intergenic 25.0%
!! TTTTGCATGAACAAAGATTT+TGG - chr5_4:13601380-13601399 None:intergenic 25.0%
!!! ATGCAAAATCTTGTTTTTCT+TGG + chr5_4:13601392-13601411 Msa0838990:intron 25.0%
! CATAACAACAACAAAACAAA+GGG - chr5_4:13601460-13601479 None:intergenic 25.0%
! ACATAACAACAACAAAACAA+AGG - chr5_4:13601461-13601480 None:intergenic 25.0%
!! TTTTCTTTCAATACTAGTGT+TGG + chr5_4:13601634-13601653 Msa0838990:CDS 25.0%
!! TATGTAATATACAGTTTTGC+AGG + chr5_4:13602072-13602091 Msa0838990:intron 25.0%
!!! GTATACATTGATGATGATAA+TGG + chr5_4:13602328-13602347 Msa0838990:CDS 25.0%
!!! CTTGATGCATTTTTTAAACA+AGG + chr5_4:13602817-13602836 Msa0838990:CDS 25.0%
! AATCATTTGAGAATGTGATT+TGG - chr5_4:13602846-13602865 None:intergenic 25.0%
! ATTTATGAAGTTAACATGAC+AGG + chr5_4:13602949-13602968 Msa0838990:CDS 25.0%
! TTTCATATGTAGGATTAACA+AGG - chr5_4:13603011-13603030 None:intergenic 25.0%
!! ACATTGATGATTTCATATGT+AGG - chr5_4:13603021-13603040 None:intergenic 25.0%
! TACATATGAAATCATCAATG+TGG + chr5_4:13603020-13603039 Msa0838990:CDS 25.0%
! CCATATGGAATAAACTTATA+AGG - chr5_4:13603363-13603382 None:intergenic 25.0%
! CCTTATAAGTTTATTCCATA+TGG + chr5_4:13603360-13603379 Msa0838990:CDS 25.0%
!! CAATAATCTTTTATGGAGTT+TGG + chr5_4:13603451-13603470 Msa0838990:intron 25.0%
!! ATTTTCATACAGGAATTTGA+CGG + chr5_4:13603512-13603531 Msa0838990:intron 25.0%
! TACTACAACAAGAACAAAAA+TGG + chr5_4:13603556-13603575 Msa0838990:CDS 25.0%
! TAATGCATGCAATATTTATG+TGG + chr5_4:13603878-13603897 Msa0838990:intron 25.0%
! TAACTTGAAGTTGAGATTAA+AGG + chr5_4:13603994-13604013 Msa0838990:intron 25.0%
! AATGAAACTTGATTACTCAA+AGG - chr5_4:13604316-13604335 None:intergenic 25.0%
! CTACAATAGTAAATTTACAC+CGG - chr5_4:13604708-13604727 None:intergenic 25.0%
! ACAATTTCTTGCAACAAAAT+TGG + chr5_4:13604784-13604803 Msa0838990:CDS 25.0%
!!! TGAATAACAATTTTAGAGTC+TGG - chr5_4:13604909-13604928 None:intergenic 25.0%
!! ACTCAAACTAAAAAGCTTTT+GGG + chr5_4:13605112-13605131 Msa0838990:three_prime_UTR 25.0%
! CTCTACTAATATACTTCATA+CGG + chr5_4:13605171-13605190 Msa0838990:three_prime_UTR 25.0%
!! GTTTCATTATTTCTTGACTT+TGG - chr5_4:13600702-13600721 None:intergenic 25.0%
!! TGAAAACATGTGAGAAATTT+TGG - chr5_4:13600824-13600843 None:intergenic 25.0%
!! CTATATGGTGTTGAAAAATA+TGG - chr5_4:13600950-13600969 None:intergenic 25.0%
!! TTTTGCATGAACAAAGATTT+TGG - chr5_4:13601380-13601399 None:intergenic 25.0%
!!! ATGCAAAATCTTGTTTTTCT+TGG + chr5_4:13601392-13601411 Msa0838990:intron 25.0%
! CATAACAACAACAAAACAAA+GGG - chr5_4:13601460-13601479 None:intergenic 25.0%
! ACATAACAACAACAAAACAA+AGG - chr5_4:13601461-13601480 None:intergenic 25.0%
!! TTTTCTTTCAATACTAGTGT+TGG + chr5_4:13601634-13601653 Msa0838990:CDS 25.0%
!! TATGTAATATACAGTTTTGC+AGG + chr5_4:13602072-13602091 Msa0838990:intron 25.0%
!!! GTATACATTGATGATGATAA+TGG + chr5_4:13602328-13602347 Msa0838990:CDS 25.0%
!!! CTTGATGCATTTTTTAAACA+AGG + chr5_4:13602817-13602836 Msa0838990:CDS 25.0%
! AATCATTTGAGAATGTGATT+TGG - chr5_4:13602846-13602865 None:intergenic 25.0%
! ATTTATGAAGTTAACATGAC+AGG + chr5_4:13602949-13602968 Msa0838990:CDS 25.0%
! TTTCATATGTAGGATTAACA+AGG - chr5_4:13603011-13603030 None:intergenic 25.0%
!! ACATTGATGATTTCATATGT+AGG - chr5_4:13603021-13603040 None:intergenic 25.0%
! TACATATGAAATCATCAATG+TGG + chr5_4:13603020-13603039 Msa0838990:CDS 25.0%
! CCATATGGAATAAACTTATA+AGG - chr5_4:13603363-13603382 None:intergenic 25.0%
! CCTTATAAGTTTATTCCATA+TGG + chr5_4:13603360-13603379 Msa0838990:CDS 25.0%
!! CAATAATCTTTTATGGAGTT+TGG + chr5_4:13603451-13603470 Msa0838990:intron 25.0%
!! ATTTTCATACAGGAATTTGA+CGG + chr5_4:13603512-13603531 Msa0838990:intron 25.0%
! TACTACAACAAGAACAAAAA+TGG + chr5_4:13603556-13603575 Msa0838990:CDS 25.0%
! TAATGCATGCAATATTTATG+TGG + chr5_4:13603878-13603897 Msa0838990:intron 25.0%
! TAACTTGAAGTTGAGATTAA+AGG + chr5_4:13603994-13604013 Msa0838990:intron 25.0%
! AATGAAACTTGATTACTCAA+AGG - chr5_4:13604316-13604335 None:intergenic 25.0%
! CTACAATAGTAAATTTACAC+CGG - chr5_4:13604708-13604727 None:intergenic 25.0%
! ACAATTTCTTGCAACAAAAT+TGG + chr5_4:13604784-13604803 Msa0838990:CDS 25.0%
!!! TGAATAACAATTTTAGAGTC+TGG - chr5_4:13604909-13604928 None:intergenic 25.0%
!! ACTCAAACTAAAAAGCTTTT+GGG + chr5_4:13605112-13605131 Msa0838990:three_prime_UTR 25.0%
! CTCTACTAATATACTTCATA+CGG + chr5_4:13605171-13605190 Msa0838990:three_prime_UTR 25.0%
! AATTTCTCACATGTTTTCAG+TGG + chr5_4:13600825-13600844 Msa0838990:five_prime_UTR 30.0%
!!! CGACTTCTTGTCTTTTTTTA+CGG - chr5_4:13600881-13600900 None:intergenic 30.0%
CGTAAAAAAAGACAAGAAGT+CGG + chr5_4:13600879-13600898 Msa0838990:five_prime_UTR 30.0%
AAAGTGGAGAAGTTAATCAA+GGG - chr5_4:13601009-13601028 None:intergenic 30.0%
! TTTAAGCATTGTGGAGAAAA+TGG - chr5_4:13601047-13601066 None:intergenic 30.0%
! AAGAAAGAGTTTAAGCATTG+TGG - chr5_4:13601056-13601075 None:intergenic 30.0%
! TCTTTCTTTGTTCCTACTTT+TGG + chr5_4:13601068-13601087 Msa0838990:five_prime_UTR 30.0%
CTTAGAATTGTGAATGAAGA+AGG - chr5_4:13601096-13601115 None:intergenic 30.0%
! TTTTTGTCCTTTCACATGTT+AGG + chr5_4:13601200-13601219 Msa0838990:intron 30.0%
! TTTTGTCCTTTCACATGTTA+GGG + chr5_4:13601201-13601220 Msa0838990:intron 30.0%
! GCATAAGATAAAGCAGATTT+TGG - chr5_4:13601293-13601312 None:intergenic 30.0%
TATAGGTAAATCATCAACCA+TGG + chr5_4:13601504-13601523 Msa0838990:intron 30.0%
AGGCCTGATATTGTAAATAT+TGG + chr5_4:13601604-13601623 Msa0838990:CDS 30.0%
GCTCCAATATTTACAATATC+AGG - chr5_4:13601610-13601629 None:intergenic 30.0%
!! AAAAATTGCTTTAGAAGCTG+CGG + chr5_4:13601666-13601685 Msa0838990:CDS 30.0%
AATTCGGATCCAAATATTCT+CGG + chr5_4:13601700-13601719 Msa0838990:CDS 30.0%
CAGGAAGATTCTAAATATAG+AGG + chr5_4:13601748-13601767 Msa0838990:CDS 30.0%
AAAGCTGAAAATGAGATAAG+AGG - chr5_4:13602187-13602206 None:intergenic 30.0%
! GACAAGTTCTGATAAAGAAT+GGG - chr5_4:13602237-13602256 None:intergenic 30.0%
! TGACAAGTTCTGATAAAGAA+TGG - chr5_4:13602238-13602257 None:intergenic 30.0%
!! ACATTGATGATGATAATGGA+AGG + chr5_4:13602332-13602351 Msa0838990:CDS 30.0%
ACAAAAAACTAAGTCCAAGA+GGG - chr5_4:13602756-13602775 None:intergenic 30.0%
TATGAAATCATCAATGTGGT+TGG + chr5_4:13603024-13603043 Msa0838990:CDS 30.0%
AAATGCTATTCCATGTGATT+TGG + chr5_4:13603151-13603170 Msa0838990:CDS 30.0%
AATGGAAGGCTATTAAGAAT+TGG + chr5_4:13603219-13603238 Msa0838990:CDS 30.0%
! TTAAGAATTGGAGTACCAAT+AGG + chr5_4:13603231-13603250 Msa0838990:CDS 30.0%
!! GGAGTTTGGATGTTTTATTA+TGG + chr5_4:13603465-13603484 Msa0838990:intron 30.0%
TACAACAAGAACAAAAATGG+TGG + chr5_4:13603559-13603578 Msa0838990:CDS 30.0%
ACTAAACCAGACTCAATATA+TGG - chr5_4:13603596-13603615 None:intergenic 30.0%
! ATATATTGAGTCTGGTTTAG+TGG + chr5_4:13603595-13603614 Msa0838990:CDS 30.0%
!! GCTCTCTTTTTCATATTAGT+TGG + chr5_4:13603698-13603717 Msa0838990:CDS 30.0%
TATTAGTTGGAACTGTAGTT+TGG + chr5_4:13603711-13603730 Msa0838990:CDS 30.0%
!!! GTAACCATTTGTTTTTTAGG+TGG - chr5_4:13603773-13603792 None:intergenic 30.0%
!! GCATTGGTTTGGTTTAAAAA+AGG - chr5_4:13603855-13603874 None:intergenic 30.0%
!! ATGCATTATTAGCATTGGTT+TGG - chr5_4:13603866-13603885 None:intergenic 30.0%
ATTGCATGCATTATTAGCAT+TGG - chr5_4:13603871-13603890 None:intergenic 30.0%
TCAAACACACACTAATATCA+AGG + chr5_4:13604163-13604182 Msa0838990:intron 30.0%
TTGTTTGTGTTGTATTTGAC+AGG + chr5_4:13604206-13604225 Msa0838990:intron 30.0%
ATGTCATAGAAGACAAGAAT+TGG - chr5_4:13604270-13604289 None:intergenic 30.0%
CTTGTCTTCTATGACATATA+TGG + chr5_4:13604273-13604292 Msa0838990:intron 30.0%
! TCATTTTATCCACACTATGT+AGG + chr5_4:13604331-13604350 Msa0838990:intron 30.0%
! CATTTTATCCACACTATGTA+GGG + chr5_4:13604332-13604351 Msa0838990:intron 30.0%
! ATTTTATCCACACTATGTAG+GGG + chr5_4:13604333-13604352 Msa0838990:intron 30.0%
AAGCTTTCAATGCCTTTAAT+GGG - chr5_4:13604481-13604500 None:intergenic 30.0%
TAAGCTTTCAATGCCTTTAA+TGG - chr5_4:13604482-13604501 None:intergenic 30.0%
ACTCATCAATACCAATATCT+TGG - chr5_4:13604564-13604583 None:intergenic 30.0%
!! ATATTGGTATTGATGAGTCT+AGG + chr5_4:13604566-13604585 Msa0838990:CDS 30.0%
CGGTGTAAATTTACTATTGT+AGG + chr5_4:13604706-13604725 Msa0838990:CDS 30.0%
ATAAAATTCCAGAATCATGC+TGG - chr5_4:13604849-13604868 None:intergenic 30.0%
ATTGTCTACCATTTGCAAAA+TGG - chr5_4:13605012-13605031 None:intergenic 30.0%
! ATTTTGCAAATGGTAGACAA+TGG + chr5_4:13605011-13605030 Msa0838990:three_prime_UTR 30.0%
! TTTTGCAAATGGTAGACAAT+GGG + chr5_4:13605012-13605031 Msa0838990:three_prime_UTR 30.0%
TACAAAGGATTCATGACAAA+TGG + chr5_4:13605039-13605058 Msa0838990:three_prime_UTR 30.0%
! GACTCAAACTAAAAAGCTTT+TGG + chr5_4:13605111-13605130 Msa0838990:three_prime_UTR 30.0%
! CTCAAACTAAAAAGCTTTTG+GGG + chr5_4:13605113-13605132 Msa0838990:three_prime_UTR 30.0%
! CCATTTTCTTTCTCTTTGAT+CGG - chr5_4:13605325-13605344 None:intergenic 30.0%
! AATTTCTCACATGTTTTCAG+TGG + chr5_4:13600825-13600844 Msa0838990:five_prime_UTR 30.0%
!!! CGACTTCTTGTCTTTTTTTA+CGG - chr5_4:13600881-13600900 None:intergenic 30.0%
CGTAAAAAAAGACAAGAAGT+CGG + chr5_4:13600879-13600898 Msa0838990:five_prime_UTR 30.0%
AAAGTGGAGAAGTTAATCAA+GGG - chr5_4:13601009-13601028 None:intergenic 30.0%
! TTTAAGCATTGTGGAGAAAA+TGG - chr5_4:13601047-13601066 None:intergenic 30.0%
! AAGAAAGAGTTTAAGCATTG+TGG - chr5_4:13601056-13601075 None:intergenic 30.0%
! TCTTTCTTTGTTCCTACTTT+TGG + chr5_4:13601068-13601087 Msa0838990:five_prime_UTR 30.0%
CTTAGAATTGTGAATGAAGA+AGG - chr5_4:13601096-13601115 None:intergenic 30.0%
! TTTTTGTCCTTTCACATGTT+AGG + chr5_4:13601200-13601219 Msa0838990:intron 30.0%
! TTTTGTCCTTTCACATGTTA+GGG + chr5_4:13601201-13601220 Msa0838990:intron 30.0%
! GCATAAGATAAAGCAGATTT+TGG - chr5_4:13601293-13601312 None:intergenic 30.0%
TATAGGTAAATCATCAACCA+TGG + chr5_4:13601504-13601523 Msa0838990:intron 30.0%
AGGCCTGATATTGTAAATAT+TGG + chr5_4:13601604-13601623 Msa0838990:CDS 30.0%
GCTCCAATATTTACAATATC+AGG - chr5_4:13601610-13601629 None:intergenic 30.0%
!! AAAAATTGCTTTAGAAGCTG+CGG + chr5_4:13601666-13601685 Msa0838990:CDS 30.0%
AATTCGGATCCAAATATTCT+CGG + chr5_4:13601700-13601719 Msa0838990:CDS 30.0%
CAGGAAGATTCTAAATATAG+AGG + chr5_4:13601748-13601767 Msa0838990:CDS 30.0%
AAAGCTGAAAATGAGATAAG+AGG - chr5_4:13602187-13602206 None:intergenic 30.0%
! GACAAGTTCTGATAAAGAAT+GGG - chr5_4:13602237-13602256 None:intergenic 30.0%
! TGACAAGTTCTGATAAAGAA+TGG - chr5_4:13602238-13602257 None:intergenic 30.0%
!! ACATTGATGATGATAATGGA+AGG + chr5_4:13602332-13602351 Msa0838990:CDS 30.0%
ACAAAAAACTAAGTCCAAGA+GGG - chr5_4:13602756-13602775 None:intergenic 30.0%
TATGAAATCATCAATGTGGT+TGG + chr5_4:13603024-13603043 Msa0838990:CDS 30.0%
AAATGCTATTCCATGTGATT+TGG + chr5_4:13603151-13603170 Msa0838990:CDS 30.0%
AATGGAAGGCTATTAAGAAT+TGG + chr5_4:13603219-13603238 Msa0838990:CDS 30.0%
! TTAAGAATTGGAGTACCAAT+AGG + chr5_4:13603231-13603250 Msa0838990:CDS 30.0%
!! GGAGTTTGGATGTTTTATTA+TGG + chr5_4:13603465-13603484 Msa0838990:intron 30.0%
TACAACAAGAACAAAAATGG+TGG + chr5_4:13603559-13603578 Msa0838990:CDS 30.0%
ACTAAACCAGACTCAATATA+TGG - chr5_4:13603596-13603615 None:intergenic 30.0%
! ATATATTGAGTCTGGTTTAG+TGG + chr5_4:13603595-13603614 Msa0838990:CDS 30.0%
!! GCTCTCTTTTTCATATTAGT+TGG + chr5_4:13603698-13603717 Msa0838990:CDS 30.0%
TATTAGTTGGAACTGTAGTT+TGG + chr5_4:13603711-13603730 Msa0838990:CDS 30.0%
!!! GTAACCATTTGTTTTTTAGG+TGG - chr5_4:13603773-13603792 None:intergenic 30.0%
!! GCATTGGTTTGGTTTAAAAA+AGG - chr5_4:13603855-13603874 None:intergenic 30.0%
!! ATGCATTATTAGCATTGGTT+TGG - chr5_4:13603866-13603885 None:intergenic 30.0%
ATTGCATGCATTATTAGCAT+TGG - chr5_4:13603871-13603890 None:intergenic 30.0%
TCAAACACACACTAATATCA+AGG + chr5_4:13604163-13604182 Msa0838990:intron 30.0%
TTGTTTGTGTTGTATTTGAC+AGG + chr5_4:13604206-13604225 Msa0838990:intron 30.0%
ATGTCATAGAAGACAAGAAT+TGG - chr5_4:13604270-13604289 None:intergenic 30.0%
CTTGTCTTCTATGACATATA+TGG + chr5_4:13604273-13604292 Msa0838990:intron 30.0%
! TCATTTTATCCACACTATGT+AGG + chr5_4:13604331-13604350 Msa0838990:intron 30.0%
! CATTTTATCCACACTATGTA+GGG + chr5_4:13604332-13604351 Msa0838990:intron 30.0%
! ATTTTATCCACACTATGTAG+GGG + chr5_4:13604333-13604352 Msa0838990:intron 30.0%
AAGCTTTCAATGCCTTTAAT+GGG - chr5_4:13604481-13604500 None:intergenic 30.0%
TAAGCTTTCAATGCCTTTAA+TGG - chr5_4:13604482-13604501 None:intergenic 30.0%
ACTCATCAATACCAATATCT+TGG - chr5_4:13604564-13604583 None:intergenic 30.0%
!! ATATTGGTATTGATGAGTCT+AGG + chr5_4:13604566-13604585 Msa0838990:CDS 30.0%
CGGTGTAAATTTACTATTGT+AGG + chr5_4:13604706-13604725 Msa0838990:CDS 30.0%
ATAAAATTCCAGAATCATGC+TGG - chr5_4:13604849-13604868 None:intergenic 30.0%
ATTGTCTACCATTTGCAAAA+TGG - chr5_4:13605012-13605031 None:intergenic 30.0%
! ATTTTGCAAATGGTAGACAA+TGG + chr5_4:13605011-13605030 Msa0838990:three_prime_UTR 30.0%
! TTTTGCAAATGGTAGACAAT+GGG + chr5_4:13605012-13605031 Msa0838990:three_prime_UTR 30.0%
TACAAAGGATTCATGACAAA+TGG + chr5_4:13605039-13605058 Msa0838990:three_prime_UTR 30.0%
! GACTCAAACTAAAAAGCTTT+TGG + chr5_4:13605111-13605130 Msa0838990:three_prime_UTR 30.0%
! CTCAAACTAAAAAGCTTTTG+GGG + chr5_4:13605113-13605132 Msa0838990:three_prime_UTR 30.0%
! CCATTTTCTTTCTCTTTGAT+CGG - chr5_4:13605325-13605344 None:intergenic 30.0%
GAAACACAAACATCTTGTGA+TGG - chr5_4:13600730-13600749 None:intergenic 35.0%
GATAATTGTCACTGTGAAAG+TGG - chr5_4:13600787-13600806 None:intergenic 35.0%
!!! GTCTTTTTTTACGGACAAGA+GGG - chr5_4:13600872-13600891 None:intergenic 35.0%
!!! TGTCTTTTTTTACGGACAAG+AGG - chr5_4:13600873-13600892 None:intergenic 35.0%
! TCCTCAGAAGTTGGATATTT+TGG - chr5_4:13600905-13600924 None:intergenic 35.0%
GAAAGTGGAGAAGTTAATCA+AGG - chr5_4:13601010-13601029 None:intergenic 35.0%
ATGAAGAAGGAACCAAAAGT+AGG - chr5_4:13601083-13601102 None:intergenic 35.0%
CATTCACAATTCTAAGCTAC+TGG + chr5_4:13601100-13601119 Msa0838990:five_prime_UTR 35.0%
CAAAATCCCTAACATGTGAA+AGG - chr5_4:13601210-13601229 None:intergenic 35.0%
!!! CTTGGTGCTTTATGACTTTT+TGG + chr5_4:13601410-13601429 Msa0838990:intron 35.0%
CATCAACCATGGTTAAAGTT+TGG + chr5_4:13601515-13601534 Msa0838990:exon 35.0%
CAATAGCCAAACTTTAACCA+TGG - chr5_4:13601524-13601543 None:intergenic 35.0%
CATGGTTAAAGTTTGGCTAT+TGG + chr5_4:13601522-13601541 Msa0838990:exon 35.0%
CTGGCATTCATAATACATCA+AGG + chr5_4:13601584-13601603 Msa0838990:CDS 35.0%
GGTTCATCAACTCATGAAAA+GGG - chr5_4:13601814-13601833 None:intergenic 35.0%
AGGTTCATCAACTCATGAAA+AGG - chr5_4:13601815-13601834 None:intergenic 35.0%
! ATATACAGTTTTGCAGGTCA+TGG + chr5_4:13602078-13602097 Msa0838990:intron 35.0%
AGACACAATGTGGCAATAAT+TGG + chr5_4:13602103-13602122 Msa0838990:CDS 35.0%
ATTGAAGTGAAGAAAGGGTA+GGG - chr5_4:13602213-13602232 None:intergenic 35.0%
AATTGAAGTGAAGAAAGGGT+AGG - chr5_4:13602214-13602233 None:intergenic 35.0%
TGGGAATTGAAGTGAAGAAA+GGG - chr5_4:13602218-13602237 None:intergenic 35.0%
ATGGGAATTGAAGTGAAGAA+AGG - chr5_4:13602219-13602238 None:intergenic 35.0%
TCACAGCGATCTTTATCAAA+TGG + chr5_4:13602255-13602274 Msa0838990:CDS 35.0%
!! GATGATGATAATGGAAGGAA+CGG + chr5_4:13602337-13602356 Msa0838990:CDS 35.0%
GATAACAAATGTGCTAGTTC+AGG + chr5_4:13602447-13602466 Msa0838990:CDS 35.0%
TTCGCAACACTAAACACTTT+CGG - chr5_4:13602526-13602545 None:intergenic 35.0%
TTTAGTGTTGCGAAGAATCT+TGG + chr5_4:13602532-13602551 Msa0838990:CDS 35.0%
AATAGCAGAAAGAAAAGCAG+TGG - chr5_4:13602587-13602606 None:intergenic 35.0%
ATATCATCCATTGCATCAGA+TGG - chr5_4:13602631-13602650 None:intergenic 35.0%
! TTTCTTTTAAGCTCCGAATC+TGG - chr5_4:13602685-13602704 None:intergenic 35.0%
AAATGGCAAAACTTGACTCA+CGG + chr5_4:13602715-13602734 Msa0838990:CDS 35.0%
GACAAAAAACTAAGTCCAAG+AGG - chr5_4:13602757-13602776 None:intergenic 35.0%
TCAAAGTTATCTACACTACG+TGG + chr5_4:13602865-13602884 Msa0838990:CDS 35.0%
GTCTAATCACTCTGGATTAT+CGG + chr5_4:13603074-13603093 Msa0838990:CDS 35.0%
!! TTGGAATGAATTGTTTCTGG+AGG - chr5_4:13603105-13603124 None:intergenic 35.0%
! GGTTTGGAATGAATTGTTTC+TGG - chr5_4:13603108-13603127 None:intergenic 35.0%
GAAACAATTCATTCCAAACC+AGG + chr5_4:13603108-13603127 Msa0838990:CDS 35.0%
CTTAATAGCCTTCCATTGTT+CGG - chr5_4:13603216-13603235 None:intergenic 35.0%
AACTTATAAGGGACAGCATA+AGG - chr5_4:13603351-13603370 None:intergenic 35.0%
AAGTTTATTCCATATGGGGA+TGG + chr5_4:13603366-13603385 Msa0838990:CDS 35.0%
! TGGAACTGTAGTTTGGATTT+TGG + chr5_4:13603718-13603737 Msa0838990:CDS 35.0%
!!! TAGTTTGGATTTTGGAGCAT+AGG + chr5_4:13603726-13603745 Msa0838990:CDS 35.0%
!!! AGTTTGGATTTTGGAGCATA+GGG + chr5_4:13603727-13603746 Msa0838990:CDS 35.0%
AGGGTGAATGATGAATTTAG+AGG + chr5_4:13603746-13603765 Msa0838990:CDS 35.0%
AGGACCACCTAAAAAACAAA+TGG + chr5_4:13603766-13603785 Msa0838990:CDS 35.0%
TGCATGCAATATTTATGTGG+AGG + chr5_4:13603881-13603900 Msa0838990:intron 35.0%
ATTCTACAACAAGCGGAAAT+TGG - chr5_4:13604144-13604163 None:intergenic 35.0%
GTGTTTGATTCTACAACAAG+CGG - chr5_4:13604151-13604170 None:intergenic 35.0%
GAAAATACAGTGAGCACATT+TGG + chr5_4:13604355-13604374 Msa0838990:CDS 35.0%
AGCTTTCAATGCCTTTAATG+GGG - chr5_4:13604480-13604499 None:intergenic 35.0%
! GGCATTGAAAGCTTAGTAAT+TGG + chr5_4:13604487-13604506 Msa0838990:CDS 35.0%
GTAATTGGCAAAGAACCAAT+TGG + chr5_4:13604502-13604521 Msa0838990:CDS 35.0%
! TTTTAGTACCAGCATGATTC+TGG + chr5_4:13604838-13604857 Msa0838990:exon 35.0%
TTGTAGGACTTCAGAGAATT+TGG - chr5_4:13604884-13604903 None:intergenic 35.0%
!!! ATTTTAGAGTCTGGCATTGT+AGG - chr5_4:13604900-13604919 None:intergenic 35.0%
! TGTTCTTAATTGTGCTGTTC+AGG + chr5_4:13604944-13604963 Msa0838990:three_prime_UTR 35.0%
! GTTCTTAATTGTGCTGTTCA+GGG + chr5_4:13604945-13604964 Msa0838990:three_prime_UTR 35.0%
! GTTGATAGGTCAATTGCTAA+TGG - chr5_4:13604987-13605006 None:intergenic 35.0%
TTTGCAAAATGGCAGTTGAT+AGG - chr5_4:13605001-13605020 None:intergenic 35.0%
!!! ATCAACTGCCATTTTGCAAA+TGG + chr5_4:13605001-13605020 Msa0838990:three_prime_UTR 35.0%
TTTGCAAATGGTAGACAATG+GGG + chr5_4:13605013-13605032 Msa0838990:three_prime_UTR 35.0%
! AGTAGAGCTTGTTTAACACA+AGG + chr5_4:13605068-13605087 Msa0838990:three_prime_UTR 35.0%
!! CTCTTCTTTTTCATCTGCAA+AGG - chr5_4:13605291-13605310 None:intergenic 35.0%
CCGATCAAAGAGAAAGAAAA+TGG + chr5_4:13605322-13605341 Msa0838990:three_prime_UTR 35.0%
ATGGAGAGAATCTCTTATAG+AGG + chr5_4:13605341-13605360 Msa0838990:three_prime_UTR 35.0%
GAAACACAAACATCTTGTGA+TGG - chr5_4:13600730-13600749 None:intergenic 35.0%
GATAATTGTCACTGTGAAAG+TGG - chr5_4:13600787-13600806 None:intergenic 35.0%
!!! GTCTTTTTTTACGGACAAGA+GGG - chr5_4:13600872-13600891 None:intergenic 35.0%
!!! TGTCTTTTTTTACGGACAAG+AGG - chr5_4:13600873-13600892 None:intergenic 35.0%
! TCCTCAGAAGTTGGATATTT+TGG - chr5_4:13600905-13600924 None:intergenic 35.0%
GAAAGTGGAGAAGTTAATCA+AGG - chr5_4:13601010-13601029 None:intergenic 35.0%
ATGAAGAAGGAACCAAAAGT+AGG - chr5_4:13601083-13601102 None:intergenic 35.0%
CATTCACAATTCTAAGCTAC+TGG + chr5_4:13601100-13601119 Msa0838990:five_prime_UTR 35.0%
CAAAATCCCTAACATGTGAA+AGG - chr5_4:13601210-13601229 None:intergenic 35.0%
!!! CTTGGTGCTTTATGACTTTT+TGG + chr5_4:13601410-13601429 Msa0838990:intron 35.0%
CATCAACCATGGTTAAAGTT+TGG + chr5_4:13601515-13601534 Msa0838990:exon 35.0%
CAATAGCCAAACTTTAACCA+TGG - chr5_4:13601524-13601543 None:intergenic 35.0%
CATGGTTAAAGTTTGGCTAT+TGG + chr5_4:13601522-13601541 Msa0838990:exon 35.0%
CTGGCATTCATAATACATCA+AGG + chr5_4:13601584-13601603 Msa0838990:CDS 35.0%
GGTTCATCAACTCATGAAAA+GGG - chr5_4:13601814-13601833 None:intergenic 35.0%
AGGTTCATCAACTCATGAAA+AGG - chr5_4:13601815-13601834 None:intergenic 35.0%
! ATATACAGTTTTGCAGGTCA+TGG + chr5_4:13602078-13602097 Msa0838990:intron 35.0%
AGACACAATGTGGCAATAAT+TGG + chr5_4:13602103-13602122 Msa0838990:CDS 35.0%
ATTGAAGTGAAGAAAGGGTA+GGG - chr5_4:13602213-13602232 None:intergenic 35.0%
AATTGAAGTGAAGAAAGGGT+AGG - chr5_4:13602214-13602233 None:intergenic 35.0%
TGGGAATTGAAGTGAAGAAA+GGG - chr5_4:13602218-13602237 None:intergenic 35.0%
ATGGGAATTGAAGTGAAGAA+AGG - chr5_4:13602219-13602238 None:intergenic 35.0%
TCACAGCGATCTTTATCAAA+TGG + chr5_4:13602255-13602274 Msa0838990:CDS 35.0%
!! GATGATGATAATGGAAGGAA+CGG + chr5_4:13602337-13602356 Msa0838990:CDS 35.0%
GATAACAAATGTGCTAGTTC+AGG + chr5_4:13602447-13602466 Msa0838990:CDS 35.0%
TTCGCAACACTAAACACTTT+CGG - chr5_4:13602526-13602545 None:intergenic 35.0%
TTTAGTGTTGCGAAGAATCT+TGG + chr5_4:13602532-13602551 Msa0838990:CDS 35.0%
AATAGCAGAAAGAAAAGCAG+TGG - chr5_4:13602587-13602606 None:intergenic 35.0%
ATATCATCCATTGCATCAGA+TGG - chr5_4:13602631-13602650 None:intergenic 35.0%
! TTTCTTTTAAGCTCCGAATC+TGG - chr5_4:13602685-13602704 None:intergenic 35.0%
AAATGGCAAAACTTGACTCA+CGG + chr5_4:13602715-13602734 Msa0838990:CDS 35.0%
GACAAAAAACTAAGTCCAAG+AGG - chr5_4:13602757-13602776 None:intergenic 35.0%
TCAAAGTTATCTACACTACG+TGG + chr5_4:13602865-13602884 Msa0838990:CDS 35.0%
GTCTAATCACTCTGGATTAT+CGG + chr5_4:13603074-13603093 Msa0838990:CDS 35.0%
!! TTGGAATGAATTGTTTCTGG+AGG - chr5_4:13603105-13603124 None:intergenic 35.0%
! GGTTTGGAATGAATTGTTTC+TGG - chr5_4:13603108-13603127 None:intergenic 35.0%
GAAACAATTCATTCCAAACC+AGG + chr5_4:13603108-13603127 Msa0838990:CDS 35.0%
CTTAATAGCCTTCCATTGTT+CGG - chr5_4:13603216-13603235 None:intergenic 35.0%
AACTTATAAGGGACAGCATA+AGG - chr5_4:13603351-13603370 None:intergenic 35.0%
AAGTTTATTCCATATGGGGA+TGG + chr5_4:13603366-13603385 Msa0838990:CDS 35.0%
! TGGAACTGTAGTTTGGATTT+TGG + chr5_4:13603718-13603737 Msa0838990:CDS 35.0%
!!! TAGTTTGGATTTTGGAGCAT+AGG + chr5_4:13603726-13603745 Msa0838990:CDS 35.0%
!!! AGTTTGGATTTTGGAGCATA+GGG + chr5_4:13603727-13603746 Msa0838990:CDS 35.0%
AGGGTGAATGATGAATTTAG+AGG + chr5_4:13603746-13603765 Msa0838990:CDS 35.0%
AGGACCACCTAAAAAACAAA+TGG + chr5_4:13603766-13603785 Msa0838990:CDS 35.0%
TGCATGCAATATTTATGTGG+AGG + chr5_4:13603881-13603900 Msa0838990:intron 35.0%
ATTCTACAACAAGCGGAAAT+TGG - chr5_4:13604144-13604163 None:intergenic 35.0%
GTGTTTGATTCTACAACAAG+CGG - chr5_4:13604151-13604170 None:intergenic 35.0%
GAAAATACAGTGAGCACATT+TGG + chr5_4:13604355-13604374 Msa0838990:CDS 35.0%
AGCTTTCAATGCCTTTAATG+GGG - chr5_4:13604480-13604499 None:intergenic 35.0%
! GGCATTGAAAGCTTAGTAAT+TGG + chr5_4:13604487-13604506 Msa0838990:CDS 35.0%
GTAATTGGCAAAGAACCAAT+TGG + chr5_4:13604502-13604521 Msa0838990:CDS 35.0%
! TTTTAGTACCAGCATGATTC+TGG + chr5_4:13604838-13604857 Msa0838990:exon 35.0%
TTGTAGGACTTCAGAGAATT+TGG - chr5_4:13604884-13604903 None:intergenic 35.0%
!!! ATTTTAGAGTCTGGCATTGT+AGG - chr5_4:13604900-13604919 None:intergenic 35.0%
! TGTTCTTAATTGTGCTGTTC+AGG + chr5_4:13604944-13604963 Msa0838990:three_prime_UTR 35.0%
! GTTCTTAATTGTGCTGTTCA+GGG + chr5_4:13604945-13604964 Msa0838990:three_prime_UTR 35.0%
! GTTGATAGGTCAATTGCTAA+TGG - chr5_4:13604987-13605006 None:intergenic 35.0%
TTTGCAAAATGGCAGTTGAT+AGG - chr5_4:13605001-13605020 None:intergenic 35.0%
!!! ATCAACTGCCATTTTGCAAA+TGG + chr5_4:13605001-13605020 Msa0838990:three_prime_UTR 35.0%
TTTGCAAATGGTAGACAATG+GGG + chr5_4:13605013-13605032 Msa0838990:three_prime_UTR 35.0%
! AGTAGAGCTTGTTTAACACA+AGG + chr5_4:13605068-13605087 Msa0838990:three_prime_UTR 35.0%
!! CTCTTCTTTTTCATCTGCAA+AGG - chr5_4:13605291-13605310 None:intergenic 35.0%
CCGATCAAAGAGAAAGAAAA+TGG + chr5_4:13605322-13605341 Msa0838990:three_prime_UTR 35.0%
ATGGAGAGAATCTCTTATAG+AGG + chr5_4:13605341-13605360 Msa0838990:three_prime_UTR 35.0%
GCCAAAATATCCAACTTCTG+AGG + chr5_4:13600901-13600920 Msa0838990:five_prime_UTR 40.0%
! GAAAATGGACAAGGCACTAA+AGG - chr5_4:13601032-13601051 None:intergenic 40.0%
CATTGTGGAGAAAATGGACA+AGG - chr5_4:13601041-13601060 None:intergenic 40.0%
ATATCCTTCCTGAAGCTCTA+AGG + chr5_4:13601137-13601156 Msa0838990:five_prime_UTR 40.0%
AAGACATACCTTAGAGCTTC+AGG - chr5_4:13601148-13601167 None:intergenic 40.0%
GCTCTAATGATTCTCTGCAA+TGG + chr5_4:13601544-13601563 Msa0838990:CDS 40.0%
!! TTGGTCTTGCCGAGAATATT+TGG - chr5_4:13601712-13601731 None:intergenic 40.0%
!! AGGTTTTCTAAGCATTGCTG+AGG + chr5_4:13601768-13601787 Msa0838990:CDS 40.0%
!! GGTTTTCTAAGCATTGCTGA+GGG + chr5_4:13601769-13601788 Msa0838990:CDS 40.0%
GAGCTGTTACAGAACTATGA+GGG - chr5_4:13602129-13602148 None:intergenic 40.0%
TGAGCTGTTACAGAACTATG+AGG - chr5_4:13602130-13602149 None:intergenic 40.0%
! ACCTTGTTGACTACTATGGA+TGG + chr5_4:13602290-13602309 Msa0838990:CDS 40.0%
TCCATCCATAGTAGTCAACA+AGG - chr5_4:13602294-13602313 None:intergenic 40.0%
!! GATAATGGAAGGAACGGAAT+TGG + chr5_4:13602343-13602362 Msa0838990:CDS 40.0%
AACAAATGTGCTAGTTCAGG+TGG + chr5_4:13602450-13602469 Msa0838990:CDS 40.0%
TCGCAACACTAAACACTTTC+GGG - chr5_4:13602525-13602544 None:intergenic 40.0%
TGCGAAGAATCTTGGAATGA+TGG + chr5_4:13602540-13602559 Msa0838990:CDS 40.0%
GCGAAGAATCTTGGAATGAT+GGG + chr5_4:13602541-13602560 Msa0838990:CDS 40.0%
! AATCTTGGAATGATGGGAAC+TGG + chr5_4:13602547-13602566 Msa0838990:CDS 40.0%
TGATGGGAACTGGTTATGTA+TGG + chr5_4:13602557-13602576 Msa0838990:CDS 40.0%
GATGCAATGGATGATATCCA+AGG + chr5_4:13602634-13602653 Msa0838990:CDS 40.0%
ACTCACGGAAATACCGATAA+TGG + chr5_4:13602730-13602749 Msa0838990:CDS 40.0%
GATGCATTGAACATCTTCGA+TGG + chr5_4:13602904-13602923 Msa0838990:CDS 40.0%
ATCATCAATGTGGTTGGAAC+CGG + chr5_4:13603030-13603049 Msa0838990:CDS 40.0%
! GGTTATTGGTCTAATCACTC+TGG + chr5_4:13603066-13603085 Msa0838990:CDS 40.0%
CAAACCAGGCAATAACTTCA+GGG + chr5_4:13603122-13603141 Msa0838990:CDS 40.0%
TTGTTCTTACCATCCCCATA+TGG - chr5_4:13603378-13603397 None:intergenic 40.0%
TCACACCAGTTGTTATCAGA+CGG - chr5_4:13603422-13603441 None:intergenic 40.0%
ACTCAGCCATATATTGAGTC+TGG + chr5_4:13603587-13603606 Msa0838990:CDS 40.0%
!! AACTAGTGCTTTGGCCTTTT+TGG + chr5_4:13603643-13603662 Msa0838990:CDS 40.0%
TGGTGTAAATGGAGCCAAAA+AGG - chr5_4:13603660-13603679 None:intergenic 40.0%
!!! TTTTGGCTCCATTTACACCA+AGG + chr5_4:13603660-13603679 Msa0838990:CDS 40.0%
! AACCACATCCTTGGTGTAAA+TGG - chr5_4:13603671-13603690 None:intergenic 40.0%
! TATTATCTCCCCCTTTTCCA+TGG + chr5_4:13603814-13603833 Msa0838990:intron 40.0%
TATTGGTGAGCCATGGAAAA+GGG - chr5_4:13603827-13603846 None:intergenic 40.0%
ATATTGGTGAGCCATGGAAA+AGG - chr5_4:13603828-13603847 None:intergenic 40.0%
TGCAATTCTGTGAGAGGAAA+AGG + chr5_4:13603905-13603924 Msa0838990:intron 40.0%
! GTATTTTCCCCTACATAGTG+TGG - chr5_4:13604343-13604362 None:intergenic 40.0%
!! GTCGTTGTGTGCTACTTATA+TGG + chr5_4:13604377-13604396 Msa0838990:CDS 40.0%
AAGAAAGCTGTTGAACTGTG+AGG - chr5_4:13604456-13604475 None:intergenic 40.0%
GCTTTCAATGCCTTTAATGG+GGG - chr5_4:13604479-13604498 None:intergenic 40.0%
GAACCAATTGGTTACACTCA+AGG + chr5_4:13604514-13604533 Msa0838990:CDS 40.0%
GAACCTTGAGTGTAACCAAT+TGG - chr5_4:13604520-13604539 None:intergenic 40.0%
TGCAAGGAAGATGTCGATAT+AGG - chr5_4:13604683-13604702 None:intergenic 40.0%
!! TAAATTTACACCGGCTTGCA+AGG - chr5_4:13604699-13604718 None:intergenic 40.0%
ATTGCTAATGGTGAGTCTCT+TGG - chr5_4:13604975-13604994 None:intergenic 40.0%
TAGACAATGGGGACTTACAA+AGG + chr5_4:13605024-13605043 Msa0838990:three_prime_UTR 40.0%
GCCAAAATATCCAACTTCTG+AGG + chr5_4:13600901-13600920 Msa0838990:five_prime_UTR 40.0%
! GAAAATGGACAAGGCACTAA+AGG - chr5_4:13601032-13601051 None:intergenic 40.0%
CATTGTGGAGAAAATGGACA+AGG - chr5_4:13601041-13601060 None:intergenic 40.0%
ATATCCTTCCTGAAGCTCTA+AGG + chr5_4:13601137-13601156 Msa0838990:five_prime_UTR 40.0%
AAGACATACCTTAGAGCTTC+AGG - chr5_4:13601148-13601167 None:intergenic 40.0%
GCTCTAATGATTCTCTGCAA+TGG + chr5_4:13601544-13601563 Msa0838990:CDS 40.0%
!! TTGGTCTTGCCGAGAATATT+TGG - chr5_4:13601712-13601731 None:intergenic 40.0%
!! AGGTTTTCTAAGCATTGCTG+AGG + chr5_4:13601768-13601787 Msa0838990:CDS 40.0%
!! GGTTTTCTAAGCATTGCTGA+GGG + chr5_4:13601769-13601788 Msa0838990:CDS 40.0%
GAGCTGTTACAGAACTATGA+GGG - chr5_4:13602129-13602148 None:intergenic 40.0%
TGAGCTGTTACAGAACTATG+AGG - chr5_4:13602130-13602149 None:intergenic 40.0%
! ACCTTGTTGACTACTATGGA+TGG + chr5_4:13602290-13602309 Msa0838990:CDS 40.0%
TCCATCCATAGTAGTCAACA+AGG - chr5_4:13602294-13602313 None:intergenic 40.0%
!! GATAATGGAAGGAACGGAAT+TGG + chr5_4:13602343-13602362 Msa0838990:CDS 40.0%
AACAAATGTGCTAGTTCAGG+TGG + chr5_4:13602450-13602469 Msa0838990:CDS 40.0%
TCGCAACACTAAACACTTTC+GGG - chr5_4:13602525-13602544 None:intergenic 40.0%
TGCGAAGAATCTTGGAATGA+TGG + chr5_4:13602540-13602559 Msa0838990:CDS 40.0%
GCGAAGAATCTTGGAATGAT+GGG + chr5_4:13602541-13602560 Msa0838990:CDS 40.0%
! AATCTTGGAATGATGGGAAC+TGG + chr5_4:13602547-13602566 Msa0838990:CDS 40.0%
TGATGGGAACTGGTTATGTA+TGG + chr5_4:13602557-13602576 Msa0838990:CDS 40.0%
GATGCAATGGATGATATCCA+AGG + chr5_4:13602634-13602653 Msa0838990:CDS 40.0%
ACTCACGGAAATACCGATAA+TGG + chr5_4:13602730-13602749 Msa0838990:CDS 40.0%
GATGCATTGAACATCTTCGA+TGG + chr5_4:13602904-13602923 Msa0838990:CDS 40.0%
ATCATCAATGTGGTTGGAAC+CGG + chr5_4:13603030-13603049 Msa0838990:CDS 40.0%
! GGTTATTGGTCTAATCACTC+TGG + chr5_4:13603066-13603085 Msa0838990:CDS 40.0%
CAAACCAGGCAATAACTTCA+GGG + chr5_4:13603122-13603141 Msa0838990:CDS 40.0%
TTGTTCTTACCATCCCCATA+TGG - chr5_4:13603378-13603397 None:intergenic 40.0%
TCACACCAGTTGTTATCAGA+CGG - chr5_4:13603422-13603441 None:intergenic 40.0%
ACTCAGCCATATATTGAGTC+TGG + chr5_4:13603587-13603606 Msa0838990:CDS 40.0%
!! AACTAGTGCTTTGGCCTTTT+TGG + chr5_4:13603643-13603662 Msa0838990:CDS 40.0%
TGGTGTAAATGGAGCCAAAA+AGG - chr5_4:13603660-13603679 None:intergenic 40.0%
!!! TTTTGGCTCCATTTACACCA+AGG + chr5_4:13603660-13603679 Msa0838990:CDS 40.0%
! AACCACATCCTTGGTGTAAA+TGG - chr5_4:13603671-13603690 None:intergenic 40.0%
! TATTATCTCCCCCTTTTCCA+TGG + chr5_4:13603814-13603833 Msa0838990:intron 40.0%
TATTGGTGAGCCATGGAAAA+GGG - chr5_4:13603827-13603846 None:intergenic 40.0%
ATATTGGTGAGCCATGGAAA+AGG - chr5_4:13603828-13603847 None:intergenic 40.0%
TGCAATTCTGTGAGAGGAAA+AGG + chr5_4:13603905-13603924 Msa0838990:intron 40.0%
! GTATTTTCCCCTACATAGTG+TGG - chr5_4:13604343-13604362 None:intergenic 40.0%
!! GTCGTTGTGTGCTACTTATA+TGG + chr5_4:13604377-13604396 Msa0838990:CDS 40.0%
AAGAAAGCTGTTGAACTGTG+AGG - chr5_4:13604456-13604475 None:intergenic 40.0%
GCTTTCAATGCCTTTAATGG+GGG - chr5_4:13604479-13604498 None:intergenic 40.0%
GAACCAATTGGTTACACTCA+AGG + chr5_4:13604514-13604533 Msa0838990:CDS 40.0%
GAACCTTGAGTGTAACCAAT+TGG - chr5_4:13604520-13604539 None:intergenic 40.0%
TGCAAGGAAGATGTCGATAT+AGG - chr5_4:13604683-13604702 None:intergenic 40.0%
!! TAAATTTACACCGGCTTGCA+AGG - chr5_4:13604699-13604718 None:intergenic 40.0%
ATTGCTAATGGTGAGTCTCT+TGG - chr5_4:13604975-13604994 None:intergenic 40.0%
TAGACAATGGGGACTTACAA+AGG + chr5_4:13605024-13605043 Msa0838990:three_prime_UTR 40.0%
TTACGGACAAGAGGGACAAT+TGG - chr5_4:13600864-13600883 None:intergenic 45.0%
CAATCACACTCCTCAGAAGT+TGG - chr5_4:13600914-13600933 None:intergenic 45.0%
! CAACTTCTGAGGAGTGTGAT+TGG + chr5_4:13600912-13600931 Msa0838990:five_prime_UTR 45.0%
! GACAAGGCACTAAAGGAAAG+TGG - chr5_4:13601025-13601044 None:intergenic 45.0%
CATACCTTAGAGCTTCAGGA+AGG - chr5_4:13601144-13601163 None:intergenic 45.0%
CAATGGCTTCTCTTCAACTG+TGG + chr5_4:13601561-13601580 Msa0838990:CDS 45.0%
TGCGGTCGACGATGTAAATT+CGG + chr5_4:13601684-13601703 Msa0838990:CDS 45.0%
CTGAAGAGAGAGCTTCAACT+TGG - chr5_4:13601731-13601750 None:intergenic 45.0%
! CAAGTTGAAGCTCTCTCTTC+AGG + chr5_4:13601729-13601748 Msa0838990:CDS 45.0%
! GCAGACCTTGTTGACTACTA+TGG + chr5_4:13602286-13602305 Msa0838990:CDS 45.0%
AGGAACGGAATTGGTGCATT+AGG + chr5_4:13602352-13602371 Msa0838990:CDS 45.0%
TGAGATTCTGCAACGCTTCT+CGG - chr5_4:13602389-13602408 None:intergenic 45.0%
TATCTCCTCTGCAGTTGCTT+CGG - chr5_4:13602431-13602450 None:intergenic 45.0%
AGTAGTTCACGCCAACACTA+TGG + chr5_4:13602495-13602514 Msa0838990:CDS 45.0%
GTAGTTCACGCCAACACTAT+GGG + chr5_4:13602496-13602515 Msa0838990:CDS 45.0%
TAGTTCACGCCAACACTATG+GGG + chr5_4:13602497-13602516 Msa0838990:CDS 45.0%
TCCATTGCCATCTGATGCAA+TGG + chr5_4:13602621-13602640 Msa0838990:CDS 45.0%
TCCATTGCATCAGATGGCAA+TGG - chr5_4:13602625-13602644 None:intergenic 45.0%
! AATACCGATAATGGCCCTCT+TGG + chr5_4:13602739-13602758 Msa0838990:CDS 45.0%
AAGTCCAAGAGGGCCATTAT+CGG - chr5_4:13602746-13602765 None:intergenic 45.0%
GCATTGAACATCTTCGATGG+AGG + chr5_4:13602907-13602926 Msa0838990:CDS 45.0%
ATGGAGGAAACACATTGCGT+AGG + chr5_4:13602923-13602942 Msa0838990:CDS 45.0%
GTTAACATGACAGGTGTGAC+AGG + chr5_4:13602958-13602977 Msa0838990:CDS 45.0%
TCATCAATGTGGTTGGAACC+GGG + chr5_4:13603031-13603050 Msa0838990:CDS 45.0%
CCTGAAGTTATTGCCTGGTT+TGG - chr5_4:13603124-13603143 None:intergenic 45.0%
CCAAACCAGGCAATAACTTC+AGG + chr5_4:13603121-13603140 Msa0838990:CDS 45.0%
! CTATTCCATGTGATTTGGCC+TGG + chr5_4:13603156-13603175 Msa0838990:CDS 45.0%
TGTTTCCAGGCCAAATCACA+TGG - chr5_4:13603164-13603183 None:intergenic 45.0%
! GGTTGGGTTTTTCCGAACAA+TGG + chr5_4:13603201-13603220 Msa0838990:CDS 45.0%
! GGGTTTTTCCGAACAATGGA+AGG + chr5_4:13603205-13603224 Msa0838990:CDS 45.0%
GTACTTGCGAGACAAATTGG+CGG - chr5_4:13603266-13603285 None:intergenic 45.0%
CTGGTACTTGCGAGACAAAT+TGG - chr5_4:13603269-13603288 None:intergenic 45.0%
CAATTTGTCTCGCAAGTACC+AGG + chr5_4:13603267-13603286 Msa0838990:CDS 45.0%
CCTTGAAATGTATCTGTGCC+TGG - chr5_4:13603288-13603307 None:intergenic 45.0%
CCAGGCACAGATACATTTCA+AGG + chr5_4:13603285-13603304 Msa0838990:CDS 45.0%
AAGGGACAGCATAAGGCAAT+AGG - chr5_4:13603344-13603363 None:intergenic 45.0%
TGTTATCAGACGGACAAGCT+CGG - chr5_4:13603412-13603431 None:intergenic 45.0%
CTTGTCCGTCTGATAACAAC+TGG + chr5_4:13603414-13603433 Msa0838990:CDS 45.0%
TAGTGGTAGTAGCACCTGTT+AGG + chr5_4:13603612-13603631 Msa0838990:CDS 45.0%
AGTGGTAGTAGCACCTGTTA+GGG + chr5_4:13603613-13603632 Msa0838990:CDS 45.0%
CTAGTTTCTGTCTCCCTAAC+AGG - chr5_4:13603629-13603648 None:intergenic 45.0%
GGAGACAGAAACTAGTGCTT+TGG + chr5_4:13603634-13603653 Msa0838990:CDS 45.0%
CTCCATTTACACCAAGGATG+TGG + chr5_4:13603666-13603685 Msa0838990:CDS 45.0%
ATTGGTGAGCCATGGAAAAG+GGG - chr5_4:13603826-13603845 None:intergenic 45.0%
GGTTCAATATTGGTGAGCCA+TGG - chr5_4:13603834-13603853 None:intergenic 45.0%
CAGCTTTCTTCCCCCATTAA+AGG + chr5_4:13604466-13604485 Msa0838990:CDS 45.0%
CTTGAGAAGGGTCCTCAAAA+TGG + chr5_4:13604628-13604647 Msa0838990:CDS 45.0%
GGTCAAGAGTTCACCAGAAA+CGG + chr5_4:13604727-13604746 Msa0838990:CDS 45.0%
GATCTGTGGATCAGCATGTT+TGG + chr5_4:13605145-13605164 Msa0838990:three_prime_UTR 45.0%
GAGAATCAAGTTCCTCTGAG+CGG - chr5_4:13605220-13605239 None:intergenic 45.0%
TTACGGACAAGAGGGACAAT+TGG - chr5_4:13600864-13600883 None:intergenic 45.0%
CAATCACACTCCTCAGAAGT+TGG - chr5_4:13600914-13600933 None:intergenic 45.0%
! CAACTTCTGAGGAGTGTGAT+TGG + chr5_4:13600912-13600931 Msa0838990:five_prime_UTR 45.0%
! GACAAGGCACTAAAGGAAAG+TGG - chr5_4:13601025-13601044 None:intergenic 45.0%
CATACCTTAGAGCTTCAGGA+AGG - chr5_4:13601144-13601163 None:intergenic 45.0%
CAATGGCTTCTCTTCAACTG+TGG + chr5_4:13601561-13601580 Msa0838990:CDS 45.0%
TGCGGTCGACGATGTAAATT+CGG + chr5_4:13601684-13601703 Msa0838990:CDS 45.0%
CTGAAGAGAGAGCTTCAACT+TGG - chr5_4:13601731-13601750 None:intergenic 45.0%
! CAAGTTGAAGCTCTCTCTTC+AGG + chr5_4:13601729-13601748 Msa0838990:CDS 45.0%
! GCAGACCTTGTTGACTACTA+TGG + chr5_4:13602286-13602305 Msa0838990:CDS 45.0%
AGGAACGGAATTGGTGCATT+AGG + chr5_4:13602352-13602371 Msa0838990:CDS 45.0%
TGAGATTCTGCAACGCTTCT+CGG - chr5_4:13602389-13602408 None:intergenic 45.0%
TATCTCCTCTGCAGTTGCTT+CGG - chr5_4:13602431-13602450 None:intergenic 45.0%
AGTAGTTCACGCCAACACTA+TGG + chr5_4:13602495-13602514 Msa0838990:CDS 45.0%
GTAGTTCACGCCAACACTAT+GGG + chr5_4:13602496-13602515 Msa0838990:CDS 45.0%
TAGTTCACGCCAACACTATG+GGG + chr5_4:13602497-13602516 Msa0838990:CDS 45.0%
TCCATTGCCATCTGATGCAA+TGG + chr5_4:13602621-13602640 Msa0838990:CDS 45.0%
TCCATTGCATCAGATGGCAA+TGG - chr5_4:13602625-13602644 None:intergenic 45.0%
! AATACCGATAATGGCCCTCT+TGG + chr5_4:13602739-13602758 Msa0838990:CDS 45.0%
AAGTCCAAGAGGGCCATTAT+CGG - chr5_4:13602746-13602765 None:intergenic 45.0%
GCATTGAACATCTTCGATGG+AGG + chr5_4:13602907-13602926 Msa0838990:CDS 45.0%
ATGGAGGAAACACATTGCGT+AGG + chr5_4:13602923-13602942 Msa0838990:CDS 45.0%
GTTAACATGACAGGTGTGAC+AGG + chr5_4:13602958-13602977 Msa0838990:CDS 45.0%
TCATCAATGTGGTTGGAACC+GGG + chr5_4:13603031-13603050 Msa0838990:CDS 45.0%
CCTGAAGTTATTGCCTGGTT+TGG - chr5_4:13603124-13603143 None:intergenic 45.0%
CCAAACCAGGCAATAACTTC+AGG + chr5_4:13603121-13603140 Msa0838990:CDS 45.0%
! CTATTCCATGTGATTTGGCC+TGG + chr5_4:13603156-13603175 Msa0838990:CDS 45.0%
TGTTTCCAGGCCAAATCACA+TGG - chr5_4:13603164-13603183 None:intergenic 45.0%
! GGTTGGGTTTTTCCGAACAA+TGG + chr5_4:13603201-13603220 Msa0838990:CDS 45.0%
! GGGTTTTTCCGAACAATGGA+AGG + chr5_4:13603205-13603224 Msa0838990:CDS 45.0%
GTACTTGCGAGACAAATTGG+CGG - chr5_4:13603266-13603285 None:intergenic 45.0%
CTGGTACTTGCGAGACAAAT+TGG - chr5_4:13603269-13603288 None:intergenic 45.0%
CAATTTGTCTCGCAAGTACC+AGG + chr5_4:13603267-13603286 Msa0838990:CDS 45.0%
CCTTGAAATGTATCTGTGCC+TGG - chr5_4:13603288-13603307 None:intergenic 45.0%
CCAGGCACAGATACATTTCA+AGG + chr5_4:13603285-13603304 Msa0838990:CDS 45.0%
AAGGGACAGCATAAGGCAAT+AGG - chr5_4:13603344-13603363 None:intergenic 45.0%
TGTTATCAGACGGACAAGCT+CGG - chr5_4:13603412-13603431 None:intergenic 45.0%
CTTGTCCGTCTGATAACAAC+TGG + chr5_4:13603414-13603433 Msa0838990:CDS 45.0%
TAGTGGTAGTAGCACCTGTT+AGG + chr5_4:13603612-13603631 Msa0838990:CDS 45.0%
AGTGGTAGTAGCACCTGTTA+GGG + chr5_4:13603613-13603632 Msa0838990:CDS 45.0%
CTAGTTTCTGTCTCCCTAAC+AGG - chr5_4:13603629-13603648 None:intergenic 45.0%
GGAGACAGAAACTAGTGCTT+TGG + chr5_4:13603634-13603653 Msa0838990:CDS 45.0%
CTCCATTTACACCAAGGATG+TGG + chr5_4:13603666-13603685 Msa0838990:CDS 45.0%
ATTGGTGAGCCATGGAAAAG+GGG - chr5_4:13603826-13603845 None:intergenic 45.0%
GGTTCAATATTGGTGAGCCA+TGG - chr5_4:13603834-13603853 None:intergenic 45.0%
CAGCTTTCTTCCCCCATTAA+AGG + chr5_4:13604466-13604485 Msa0838990:CDS 45.0%
CTTGAGAAGGGTCCTCAAAA+TGG + chr5_4:13604628-13604647 Msa0838990:CDS 45.0%
GGTCAAGAGTTCACCAGAAA+CGG + chr5_4:13604727-13604746 Msa0838990:CDS 45.0%
GATCTGTGGATCAGCATGTT+TGG + chr5_4:13605145-13605164 Msa0838990:three_prime_UTR 45.0%
GAGAATCAAGTTCCTCTGAG+CGG - chr5_4:13605220-13605239 None:intergenic 45.0%
!! AAAAAAATAAAAAATTTACA+AGG - chr5_4:13601835-13601854 None:intergenic 5.0%
!!! TTGTAAATTTTTTATTTTTT+TGG + chr5_4:13601834-13601853 Msa0838990:intron 5.0%
!! AAAAAAATAAAAAATTTACA+AGG - chr5_4:13601835-13601854 None:intergenic 5.0%
!!! TTGTAAATTTTTTATTTTTT+TGG + chr5_4:13601834-13601853 Msa0838990:intron 5.0%
GGTCATGGCTAGACACAATG+TGG + chr5_4:13602093-13602112 Msa0838990:CDS 50.0%
ATCTCCTCTGCAGTTGCTTC+GGG - chr5_4:13602430-13602449 None:intergenic 50.0%
AGTTCACGCCAACACTATGG+GGG + chr5_4:13602498-13602517 Msa0838990:CDS 50.0%
CTCTCCCTGAAGTTATTGCC+TGG - chr5_4:13603129-13603148 None:intergenic 50.0%
TGGCGGTAACTAACGCCTAT+TGG - chr5_4:13603249-13603268 None:intergenic 50.0%
CAGGAATTTGACGGTGCAGT+AGG + chr5_4:13603521-13603540 Msa0838990:intron 50.0%
GCTGTGACAAACCACATCCT+TGG - chr5_4:13603680-13603699 None:intergenic 50.0%
TTGGTGAGCCATGGAAAAGG+GGG - chr5_4:13603825-13603844 None:intergenic 50.0%
AGTGCTCTAGCAGCTTCTTC+AGG - chr5_4:13604610-13604629 None:intergenic 50.0%
! AGCTGCTAGAGCACTTGAGA+AGG + chr5_4:13604615-13604634 Msa0838990:CDS 50.0%
! GCTGCTAGAGCACTTGAGAA+GGG + chr5_4:13604616-13604635 Msa0838990:CDS 50.0%
GAGAAGGGTCCTCAAAATGG+CGG + chr5_4:13604631-13604650 Msa0838990:CDS 50.0%
TCGACATCTTCCTTGCAAGC+CGG + chr5_4:13604686-13604705 Msa0838990:CDS 50.0%
AAGAGTTCACCAGAAACGGC+TGG + chr5_4:13604731-13604750 Msa0838990:CDS 50.0%
AGAGTTCACCAGAAACGGCT+GGG + chr5_4:13604732-13604751 Msa0838990:CDS 50.0%
TACAAATCCCCAGCCGTTTC+TGG - chr5_4:13604743-13604762 None:intergenic 50.0%
TGGGGACTGTATGTGATCTG+TGG + chr5_4:13605131-13605150 Msa0838990:three_prime_UTR 50.0%
! GTATATCAAGCACCGCTCAG+AGG + chr5_4:13605205-13605224 Msa0838990:three_prime_UTR 50.0%
! ACGATCCTGAGCTAGGGTTT+TGG - chr5_4:13605247-13605266 None:intergenic 50.0%
AAACCCTAGCTCAGGATCGT+CGG + chr5_4:13605247-13605266 Msa0838990:three_prime_UTR 50.0%
GGTCATGGCTAGACACAATG+TGG + chr5_4:13602093-13602112 Msa0838990:CDS 50.0%
ATCTCCTCTGCAGTTGCTTC+GGG - chr5_4:13602430-13602449 None:intergenic 50.0%
AGTTCACGCCAACACTATGG+GGG + chr5_4:13602498-13602517 Msa0838990:CDS 50.0%
CTCTCCCTGAAGTTATTGCC+TGG - chr5_4:13603129-13603148 None:intergenic 50.0%
TGGCGGTAACTAACGCCTAT+TGG - chr5_4:13603249-13603268 None:intergenic 50.0%
CAGGAATTTGACGGTGCAGT+AGG + chr5_4:13603521-13603540 Msa0838990:intron 50.0%
GCTGTGACAAACCACATCCT+TGG - chr5_4:13603680-13603699 None:intergenic 50.0%
TTGGTGAGCCATGGAAAAGG+GGG - chr5_4:13603825-13603844 None:intergenic 50.0%
AGTGCTCTAGCAGCTTCTTC+AGG - chr5_4:13604610-13604629 None:intergenic 50.0%
! AGCTGCTAGAGCACTTGAGA+AGG + chr5_4:13604615-13604634 Msa0838990:CDS 50.0%
! GCTGCTAGAGCACTTGAGAA+GGG + chr5_4:13604616-13604635 Msa0838990:CDS 50.0%
GAGAAGGGTCCTCAAAATGG+CGG + chr5_4:13604631-13604650 Msa0838990:CDS 50.0%
TCGACATCTTCCTTGCAAGC+CGG + chr5_4:13604686-13604705 Msa0838990:CDS 50.0%
AAGAGTTCACCAGAAACGGC+TGG + chr5_4:13604731-13604750 Msa0838990:CDS 50.0%
AGAGTTCACCAGAAACGGCT+GGG + chr5_4:13604732-13604751 Msa0838990:CDS 50.0%
TACAAATCCCCAGCCGTTTC+TGG - chr5_4:13604743-13604762 None:intergenic 50.0%
TGGGGACTGTATGTGATCTG+TGG + chr5_4:13605131-13605150 Msa0838990:three_prime_UTR 50.0%
! GTATATCAAGCACCGCTCAG+AGG + chr5_4:13605205-13605224 Msa0838990:three_prime_UTR 50.0%
! ACGATCCTGAGCTAGGGTTT+TGG - chr5_4:13605247-13605266 None:intergenic 50.0%
AAACCCTAGCTCAGGATCGT+CGG + chr5_4:13605247-13605266 Msa0838990:three_prime_UTR 50.0%
GGCTTCTCTTCAACTGTGGC+TGG + chr5_4:13601565-13601584 Msa0838990:CDS 55.0%
GTTCACGCCAACACTATGGG+GGG + chr5_4:13602499-13602518 Msa0838990:CDS 55.0%
ACGCGTGCACACACCAGATT+CGG + chr5_4:13602669-13602688 Msa0838990:CDS 55.0%
ATGTGGTTGGAACCGGGTCT+CGG + chr5_4:13603037-13603056 Msa0838990:CDS 55.0%
ATAACCGATCCTCCGAGACC+CGG - chr5_4:13603052-13603071 None:intergenic 55.0%
GGTCTCGGAGGATCGGTTAT+TGG + chr5_4:13603052-13603071 Msa0838990:CDS 55.0%
GGCTTCTGAGCTGTGTTTCC+AGG - chr5_4:13603177-13603196 None:intergenic 55.0%
AACACAGCTCAGAAGCCTCG+CGG + chr5_4:13603180-13603199 Msa0838990:CDS 55.0%
TTCGGAAAAACCCAACCGCG+AGG - chr5_4:13603198-13603217 None:intergenic 55.0%
!! CGGACAAGCTCGGTGTTACT+AGG - chr5_4:13603402-13603421 None:intergenic 55.0%
GGAGGCTGCAATTCTGTGAG+AGG + chr5_4:13603899-13603918 Msa0838990:intron 55.0%
GAGTTCACCAGAAACGGCTG+GGG + chr5_4:13604733-13604752 Msa0838990:CDS 55.0%
!! CCTGAGCTAGGGTTTTGGTC+AGG - chr5_4:13605242-13605261 None:intergenic 55.0%
CCTGACCAAAACCCTAGCTC+AGG + chr5_4:13605239-13605258 Msa0838990:three_prime_UTR 55.0%
AACCCTAGCTCAGGATCGTC+GGG + chr5_4:13605248-13605267 Msa0838990:three_prime_UTR 55.0%
AACCCGACGATCCTGAGCTA+GGG - chr5_4:13605253-13605272 None:intergenic 55.0%
AAACCCGACGATCCTGAGCT+AGG - chr5_4:13605254-13605273 None:intergenic 55.0%
GGCTTCTCTTCAACTGTGGC+TGG + chr5_4:13601565-13601584 Msa0838990:CDS 55.0%
GTTCACGCCAACACTATGGG+GGG + chr5_4:13602499-13602518 Msa0838990:CDS 55.0%
ACGCGTGCACACACCAGATT+CGG + chr5_4:13602669-13602688 Msa0838990:CDS 55.0%
ATGTGGTTGGAACCGGGTCT+CGG + chr5_4:13603037-13603056 Msa0838990:CDS 55.0%
ATAACCGATCCTCCGAGACC+CGG - chr5_4:13603052-13603071 None:intergenic 55.0%
GGTCTCGGAGGATCGGTTAT+TGG + chr5_4:13603052-13603071 Msa0838990:CDS 55.0%
GGCTTCTGAGCTGTGTTTCC+AGG - chr5_4:13603177-13603196 None:intergenic 55.0%
AACACAGCTCAGAAGCCTCG+CGG + chr5_4:13603180-13603199 Msa0838990:CDS 55.0%
TTCGGAAAAACCCAACCGCG+AGG - chr5_4:13603198-13603217 None:intergenic 55.0%
!! CGGACAAGCTCGGTGTTACT+AGG - chr5_4:13603402-13603421 None:intergenic 55.0%
GGAGGCTGCAATTCTGTGAG+AGG + chr5_4:13603899-13603918 Msa0838990:intron 55.0%
GAGTTCACCAGAAACGGCTG+GGG + chr5_4:13604733-13604752 Msa0838990:CDS 55.0%
!! CCTGAGCTAGGGTTTTGGTC+AGG - chr5_4:13605242-13605261 None:intergenic 55.0%
CCTGACCAAAACCCTAGCTC+AGG + chr5_4:13605239-13605258 Msa0838990:three_prime_UTR 55.0%
AACCCTAGCTCAGGATCGTC+GGG + chr5_4:13605248-13605267 Msa0838990:three_prime_UTR 55.0%
AACCCGACGATCCTGAGCTA+GGG - chr5_4:13605253-13605272 None:intergenic 55.0%
AAACCCGACGATCCTGAGCT+AGG - chr5_4:13605254-13605273 None:intergenic 55.0%
GCAGTTGCTTCGGGTCTCAC+AGG - chr5_4:13602421-13602440 None:intergenic 60.0%
GAGACCCGAAGCAACTGCAG+AGG + chr5_4:13602423-13602442 Msa0838990:CDS 60.0%
TTTCGGGCCCCCCATAGTGT+TGG - chr5_4:13602509-13602528 None:intergenic 60.0%
CGCGTGCTGTCAACACTCCT+TGG - chr5_4:13602654-13602673 None:intergenic 60.0%
AGCTCAGAAGCCTCGCGGTT+GGG + chr5_4:13603185-13603204 Msa0838990:CDS 60.0%
!! GCAGCAACGCCGCCATTTTG+AGG - chr5_4:13604643-13604662 None:intergenic 60.0%
GCAGTTGCTTCGGGTCTCAC+AGG - chr5_4:13602421-13602440 None:intergenic 60.0%
GAGACCCGAAGCAACTGCAG+AGG + chr5_4:13602423-13602442 Msa0838990:CDS 60.0%
TTTCGGGCCCCCCATAGTGT+TGG - chr5_4:13602509-13602528 None:intergenic 60.0%
CGCGTGCTGTCAACACTCCT+TGG - chr5_4:13602654-13602673 None:intergenic 60.0%
AGCTCAGAAGCCTCGCGGTT+GGG + chr5_4:13603185-13603204 Msa0838990:CDS 60.0%
!! GCAGCAACGCCGCCATTTTG+AGG - chr5_4:13604643-13604662 None:intergenic 60.0%
TGGTTGGAACCGGGTCTCGG+AGG + chr5_4:13603040-13603059 Msa0838990:CDS 65.0%
GGAACCGGGTCTCGGAGGAT+CGG + chr5_4:13603045-13603064 Msa0838990:CDS 65.0%
CAGCTCAGAAGCCTCGCGGT+TGG + chr5_4:13603184-13603203 Msa0838990:CDS 65.0%
TGGTTGGAACCGGGTCTCGG+AGG + chr5_4:13603040-13603059 Msa0838990:CDS 65.0%
GGAACCGGGTCTCGGAGGAT+CGG + chr5_4:13603045-13603064 Msa0838990:CDS 65.0%
CAGCTCAGAAGCCTCGCGGT+TGG + chr5_4:13603184-13603203 Msa0838990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 13600688 13605364 13600688 ID=Msa0838990;Name=Msa0838990
chr5_4 mRNA 13600688 13605364 13600688 ID=Msa0838990-mRNA-1;Parent=Msa0838990;Name=Msa0838990-mRNA-1;_AED=0.11;_eAED=0.11;_QI=485|1|1|1|0.8|0.66|6|521|806
chr5_4 exon 13600688 13601158 13600688 ID=Msa0838990-mRNA-1:exon:6079;Parent=Msa0838990-mRNA-1
chr5_4 exon 13601509 13601790 13601509 ID=Msa0838990-mRNA-1:exon:6080;Parent=Msa0838990-mRNA-1
chr5_4 exon 13602086 13603437 13602086 ID=Msa0838990-mRNA-1:exon:6081;Parent=Msa0838990-mRNA-1
chr5_4 exon 13603524 13603801 13603524 ID=Msa0838990-mRNA-1:exon:6082;Parent=Msa0838990-mRNA-1
chr5_4 exon 13604228 13604259 13604228 ID=Msa0838990-mRNA-1:exon:6083;Parent=Msa0838990-mRNA-1
chr5_4 exon 13604353 13605364 13604353 ID=Msa0838990-mRNA-1:exon:6084;Parent=Msa0838990-mRNA-1
chr5_4 five_prime_UTR 13600688 13601158 13600688 ID=Msa0838990-mRNA-1:five_prime_utr;Parent=Msa0838990-mRNA-1
chr5_4 five_prime_UTR 13601509 13601522 13601509 ID=Msa0838990-mRNA-1:five_prime_utr;Parent=Msa0838990-mRNA-1
chr5_4 CDS 13601523 13601790 13601523 ID=Msa0838990-mRNA-1:cds;Parent=Msa0838990-mRNA-1
chr5_4 CDS 13602086 13603437 13602086 ID=Msa0838990-mRNA-1:cds;Parent=Msa0838990-mRNA-1
chr5_4 CDS 13603524 13603801 13603524 ID=Msa0838990-mRNA-1:cds;Parent=Msa0838990-mRNA-1
chr5_4 CDS 13604228 13604259 13604228 ID=Msa0838990-mRNA-1:cds;Parent=Msa0838990-mRNA-1
chr5_4 CDS 13604353 13604843 13604353 ID=Msa0838990-mRNA-1:cds;Parent=Msa0838990-mRNA-1
chr5_4 three_prime_UTR 13604844 13605364 13604844 ID=Msa0838990-mRNA-1:three_prime_utr;Parent=Msa0838990-mRNA-1
Gene Sequence

>Msa0838990

ATGGTTAAAGTTTGGCTATTGGCTCTAATGATTCTCTGCAATGGCTTCTCTTCAACTGTGGCTGGCATTCATAATACATCAAGGCCTGATATTGTAAATATTGGAGCTCTCTTTTCTTTCAATACTAGTGTTGGTAAGATTATAAAAATTGCTTTAGAAGCTGCGGTCGACGATGTAAATTCGGATCCAAATATTCTCGGCAAGACCAAGTTGAAGCTCTCTCTTCAGGAAGATTCTAAATATAGAGGTTTTCTAAGCATTGCTGAGGTTTTGCAGGTCATGGCTAGACACAATGTGGCAATAATTGGCCCTCATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTTCAAGTTCCTCTTATCTCATTTTCAGCTTTAGACCCTACCCTTTCTTCACTTCAATTCCCATTCTTTATCAGAACTTGTCACAGCGATCTTTATCAAATGGCTGCAATAGCAGACCTTGTTGACTACTATGGATGGAAAGAAGTCATTGCTGTATACATTGATGATGATAATGGAAGGAACGGAATTGGTGCATTAGGTGATAAGCTTTCCGAGAAGCGTTGCAGAATCTCATATAAAGCGCCTGTGAGACCCGAAGCAACTGCAGAGGAGATAACAAATGTGCTAGTTCAGGTGGCTCTTGCTGAATCAAGAGTTATAGTAGTTCACGCCAACACTATGGGGGGCCCGAAAGTGTTTAGTGTTGCGAAGAATCTTGGAATGATGGGAACTGGTTATGTATGGATAGCCACTGCTTTTCTTTCTGCTATTCTTGATATAAATAGTCCATTGCCATCTGATGCAATGGATGATATCCAAGGAGTGTTGACAGCACGCGTGCACACACCAGATTCGGAGCTTAAAAGAAAGTTTGTTTCTAAATGGCAAAACTTGACTCACGGAAATACCGATAATGGCCCTCTTGGACTTAGTTTTTTGTCTCTTTATGCATATGATACTATTTATGCTCTTGCTCATGCACTTGATGCATTTTTTAAACAAGGGAACCAAATCACATTCTCAAATGATTCAAAGTTATCTACACTACGTGGAGACAACTTGCGTCTTGATGCATTGAACATCTTCGATGGAGGAAACACATTGCGTAGGAACATTTATGAAGTTAACATGACAGGTGTGACAGGCTTGTTCAAGTATGCAGATGATAAAAACCTTGTTAATCCTACATATGAAATCATCAATGTGGTTGGAACCGGGTCTCGGAGGATCGGTTATTGGTCTAATCACTCTGGATTATCGGCTGTTCCTCCAGAAACAATTCATTCCAAACCAGGCAATAACTTCAGGGAGAGTAAAATGCTATTCCATGTGATTTGGCCTGGAAACACAGCTCAGAAGCCTCGCGGTTGGGTTTTTCCGAACAATGGAAGGCTATTAAGAATTGGAGTACCAATAGGCGTTAGTTACCGCCAATTTGTCTCGCAAGTACCAGGCACAGATACATTTCAAGGATTCTGCATTGATGTATTTCTTTCTGCAGTTAACCTATTGCCTTATGCTGTCCCTTATAAGTTTATTCCATATGGGGATGGTAAGAACAATCCTAGTAACACCGAGCTTGTCCGTCTGATAACAACTGGTGAATTTGACGGTGCAGTAGGTGACATTGCAATTACTACAACAAGAACAAAAATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTTTAGTGGTAGTAGCACCTGTTAGGGAGACAGAAACTAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGGATGTGGTTTGTCACAGCTCTCTTTTTCATATTAGTTGGAACTGTAGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCTAAAAAACAAATGGTTACTATTTTTTGGTTTAGCTTTTCAACAATGTTCTTTTCACATAGGGAAAATACAGTGAGCACATTTGGTCGTTGTGTGCTACTTATATGGTTATTTGTAGTACTTATAATTACTTCAAGTTACACAGCAAGTCTAACATCAATCCTCACAGTTCAACAGCTTTCTTCCCCCATTAAAGGCATTGAAAGCTTAGTAATTGGCAAAGAACCAATTGGTTACACTCAAGGTTCTTTTTCTAAAAACTATTTAATCCAAGATATTGGTATTGATGAGTCTAGGCTTGTTGCTTTAAGAACACCTGAAGAAGCTGCTAGAGCACTTGAGAAGGGTCCTCAAAATGGCGGCGTTGCTGCTTATATCGATCAACGTGCCTATATCGACATCTTCCTTGCAAGCCGGTGTAAATTTACTATTGTAGGTCAAGAGTTCACCAGAAACGGCTGGGGATTTGTAAGTATCTTTCAAGTTTTCTTTACAATTTCTTGCAACAAAATTGGCCAATTTAAAAGAATTAATGTGATAGAAGATTTTTAG
Protein sequence

>Msa0838990

MVKVWLLALMILCNGFSSTVAGIHNTSRPDIVNIGALFSFNTSVGKIIKIALEAAVDDVNSDPNILGKTKLKLSLQEDSKYRGFLSIAEVLQVMARHNVAIIGPHSSVTAHVITHIANELQVPLISFSALDPTLSSLQFPFFIRTCHSDLYQMAAIADLVDYYGWKEVIAVYIDDDNGRNGIGALGDKLSEKRCRISYKAPVRPEATAEEITNVLVQVALAESRVIVVHANTMGGPKVFSVAKNLGMMGTGYVWIATAFLSAILDINSPLPSDAMDDIQGVLTARVHTPDSELKRKFVSKWQNLTHGNTDNGPLGLSFLSLYAYDTIYALAHALDAFFKQGNQITFSNDSKLSTLRGDNLRLDALNIFDGGNTLRRNIYEVNMTGVTGLFKYADDKNLVNPTYEIINVVGTGSRRIGYWSNHSGLSAVPPETIHSKPGNNFRESKMLFHVIWPGNTAQKPRGWVFPNNGRLLRIGVPIGVSYRQFVSQVPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSNTELVRLITTGEFDGAVGDIAITTTRTKMVDFTQPYIESGLVVVAPVRETETSALAFLAPFTPRMWFVTALFFILVGTVVWILEHRVNDEFRGPPKKQMVTIFWFSFSTMFFSHRENTVSTFGRCVLLIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIESLVIGKEPIGYTQGSFSKNYLIQDIGIDESRLVALRTPEEAARALEKGPQNGGVAAYIDQRAYIDIFLASRCKFTIVGQEFTRNGWGFVSIFQVFFTISCNKIGQFKRINVIEDF*