AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0718410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718410 MtrunA17_Chr5g0407541 90.028 361 11 3 1 361 41 376 0.0 627
Msa0718410 MtrunA17_Chr1g0173181 46.939 343 149 5 14 355 71 381 2.88e-101 308
Msa0718410 MtrunA17_Chr6g0463311 77.358 53 12 0 118 170 2 54 3.01e-20 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718410 AT2G17420.1 74.366 355 66 1 7 361 54 383 0.0 538
Msa0718410 AT2G17420.2 82.828 297 51 0 7 303 54 350 0.0 514
Msa0718410 AT4G35460.1 73.803 355 68 1 7 361 46 375 0.0 509
Msa0718410 AT2G41680.1 46.450 338 148 5 14 350 86 391 4.41e-102 311

Find 129 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTGATTTGAAGGTTTC+TGG 0.081370 5_1:-12645730 Msa0718410:CDS
TCACCGAAGGGATACGTTTC+GGG 0.179879 5_1:-12645893 Msa0718410:CDS
CGTCAACAGTCCGCTAAATT+TGG 0.205219 5_1:-12646228 Msa0718410:CDS
TCTGGGTTGTTCTTTGCAAT+TGG 0.250878 5_1:-12645712 Msa0718410:CDS
TTTGAGTAATGATAAGATTA+AGG 0.284692 5_1:-12645845 Msa0718410:CDS
CTTCACCGAAACGGTTTCTA+AGG 0.285123 5_1:-12646196 Msa0718410:CDS
ATTAAGCATCTTGTGAGTTC+TGG 0.297594 5_1:+12641367 None:intergenic
TCAATGGTGGTTGAGGCTTT+TGG 0.297880 5_1:-12645811 Msa0718410:CDS
TTCGGCACGGGCGGCGTATA+CGG 0.300560 5_1:+12646386 None:intergenic
TACGGCGGCGGTGTGGGCGG+CGG 0.303675 5_1:+12646404 None:intergenic
ATGATAAGATTAAGGTGATT+TGG 0.304348 5_1:-12645837 Msa0718410:CDS
ACGGCGGCGGTGTGGGCGGC+GGG 0.304944 5_1:+12646405 None:intergenic
CTTATCATTTGTTGGGTCAA+TGG 0.312368 5_1:-12641182 Msa0718410:three_prime_UTR
CTGGGTTGTTCTTTGCAATT+GGG 0.312403 5_1:-12645711 Msa0718410:CDS
TGCAGGGTGCATGGCAGCTT+TGG 0.342461 5_1:-12641458 Msa0718410:intron
GAATCAGTGAAAACCCTAAA+AGG 0.351127 5_1:+12646156 None:intergenic
GTTGTAAACCAACTCCTTGC+AGG 0.353930 5_1:+12641422 None:intergenic
GAGGATTCCGTCGGGGAAAC+CGG 0.355019 5_1:+12646275 None:intergenic
TTTCTGATTTGAAGGTTTCT+GGG 0.369720 5_1:-12645729 Msa0718410:CDS
TTCACCGAAGGGATACGTTT+CGG 0.374958 5_1:-12645894 Msa0718410:CDS
GTGATGGTCCTAATGGTTAC+TGG 0.379009 5_1:-12646059 Msa0718410:CDS
GGCGTATACGGCGGCGGTGT+GGG 0.386511 5_1:+12646398 None:intergenic
CTTTGCAATTGGGCATGAAC+CGG 0.389279 5_1:-12645701 Msa0718410:CDS
CGGCGGCGGTGTGGGCGGCG+GGG 0.394828 5_1:+12646406 None:intergenic
GTTATGAACTTATCATTTGT+TGG 0.400293 5_1:-12641190 Msa0718410:three_prime_UTR
ATGGGGAGAATAAGAAGCTT+GGG 0.403667 5_1:-12645786 Msa0718410:CDS
TTATGAACTTATCATTTGTT+GGG 0.406528 5_1:-12641189 Msa0718410:three_prime_UTR
CAAATTTAGCGGACTGTTGA+CGG 0.417215 5_1:+12646229 None:intergenic
AAAAGAGGTTTCTGATTTGA+AGG 0.426432 5_1:-12645737 Msa0718410:CDS
TAAGGTGATTTGGAATTCAA+TGG 0.429889 5_1:-12645827 Msa0718410:CDS
GATCTTTCGTAACAAACCTT+TGG 0.430114 5_1:-12645992 Msa0718410:CDS
ACGTACTGTTGAAGCTGATT+CGG 0.431276 5_1:-12646133 Msa0718410:CDS
AACAAATATAAGTATGTTTG+TGG 0.432401 5_1:+12641210 None:intergenic
CCGTTCACCGGCTCCGGTGA+TGG 0.440754 5_1:-12646075 Msa0718410:CDS
GAAGAGGATTGGTTTGAGTT+CGG 0.442464 5_1:+12646368 None:intergenic
GTGGTGGTGAGTTGGCCTCC+TGG 0.444418 5_1:+12646318 None:intergenic
CGGCGTATACGGCGGCGGTG+TGG 0.452801 5_1:+12646397 None:intergenic
GCAAGGAGTTGGTTTACAAC+AGG 0.454221 5_1:-12641419 Msa0718410:CDS
AGTAGTGGCAGAGCGGCATC+TGG 0.457334 5_1:+12643320 None:intergenic
CCACGGTTCCAGTAACCATT+AGG 0.457528 5_1:+12646051 None:intergenic
CGGTTACCGTTCACCGGCTC+CGG 0.460678 5_1:-12646081 Msa0718410:CDS
GGCTCCGGTGATGGTCCTAA+TGG 0.460947 5_1:-12646066 Msa0718410:CDS
TCTGCCACTACTGTTCCAAT+TGG 0.462742 5_1:-12643309 Msa0718410:intron
AGGATTCCGTCGGGGAAACC+GGG 0.463354 5_1:+12646276 None:intergenic
GAGGGTGGTGTTGTCAGTCA+TGG 0.470209 5_1:+12646467 None:intergenic
GAACAAATAAAGATTCTAGC+AGG 0.472368 5_1:+12641292 None:intergenic
GAGCGGCATCTGGCTGCTAC+AGG 0.474627 5_1:+12643330 None:intergenic
ATCCATCCTTCGAAGAGGAT+TGG 0.474710 5_1:+12646357 None:intergenic
CCTAATGGTTACTGGAACCG+TGG 0.480720 5_1:-12646051 Msa0718410:CDS
ATCAACCTTAGAAACCGTTT+CGG 0.485663 5_1:+12646191 None:intergenic
GGGTATGTTGTGACGAAGCC+GGG 0.487150 5_1:-12645637 Msa0718410:CDS
AATCCTCGGCGGCGAACTCA+TGG 0.487221 5_1:-12646259 Msa0718410:CDS
ATGGCCAACGACATCGCTCC+AGG 0.490028 5_1:-12646336 Msa0718410:CDS
CAATTAGAGCTTGATTCTGA+TGG 0.491874 5_1:-12645658 Msa0718410:CDS
AACCAATCCTCTTCGAAGGA+TGG 0.495853 5_1:-12646359 Msa0718410:CDS
AGAGCGATTGACTAGCTAAA+GGG 0.497144 5_1:-12641393 Msa0718410:exon
AACCGTTTCGGTGAAGATCT+CGG 0.497670 5_1:+12646203 None:intergenic
ACAAATATAAGTATGTTTGT+GGG 0.498455 5_1:+12641211 None:intergenic
GGTTTCCCCGACGGAATCCT+CGG 0.502701 5_1:-12646273 Msa0718410:CDS
TTGGAATTCAATGGTGGTTG+AGG 0.502804 5_1:-12645818 Msa0718410:CDS
GATGGGGAGAATAAGAAGCT+TGG 0.505336 5_1:-12645787 Msa0718410:CDS
ACGGGCGGCGTATACGGCGG+CGG 0.506979 5_1:+12646392 None:intergenic
GAACATTTCCTGCAAGGAGT+TGG 0.506995 5_1:-12641430 Msa0718410:CDS
GCTGCAATTGTCCAGGATAG+TGG 0.509573 5_1:-12643409 Msa0718410:intron
AAAACTAAGCTCTGCATCAT+CGG 0.514903 5_1:-12646435 Msa0718410:CDS
GGGTTTGAAGGTGGAGAATG+TGG 0.515585 5_1:-12645764 Msa0718410:CDS
CCTTTGGCAGTGATCGGTGG+TGG 0.516096 5_1:-12645976 Msa0718410:CDS
AACCGAGATCTTCACCGAAA+CGG 0.516755 5_1:-12646205 Msa0718410:CDS
GCGAAACGGTTACCGTTCAC+CGG 0.516776 5_1:-12646087 Msa0718410:CDS
GATTGGTTTGAGTTCGGCAC+GGG 0.519127 5_1:+12646374 None:intergenic
TCGCCGCCGAGGATTCCGTC+GGG 0.521460 5_1:+12646267 None:intergenic
TGGTTTGAGTTCGGCACGGG+CGG 0.533615 5_1:+12646377 None:intergenic
CTACCGGAGCTGTTGCGAAA+CGG 0.536790 5_1:-12646101 Msa0718410:CDS
ACTGACGTCGAGAATTTCCC+CGG 0.536816 5_1:-12646294 Msa0718410:CDS
GCCTCCTGGAGCGATGTCGT+TGG 0.537048 5_1:+12646332 None:intergenic
CGTCAGTTGTGGTGGTGAGT+TGG 0.540223 5_1:+12646310 None:intergenic
TAACCGTTTCGCAACAGCTC+CGG 0.541587 5_1:+12646098 None:intergenic
AACAAACCTTTGGCAGTGAT+CGG 0.545138 5_1:-12645982 Msa0718410:CDS
TATTATTCAAAATTTGATTG+TGG 0.545656 5_1:-12641267 Msa0718410:three_prime_UTR
GTATACGGCGGCGGTGTGGG+CGG 0.546275 5_1:+12646401 None:intergenic
TGGGTATGTTGTGACGAAGC+CGG 0.551891 5_1:-12645638 Msa0718410:CDS
GAAATTCTCGACGTCAGTTG+TGG 0.552541 5_1:+12646299 None:intergenic
AAAGGTTTGTTACGAAAGAT+CGG 0.552657 5_1:+12645994 None:intergenic
AATTAGAGCTTGATTCTGAT+GGG 0.555648 5_1:-12645657 Msa0718410:CDS
CAACACAATCGCAGAAGTCA+AGG 0.555780 5_1:+12643374 None:intergenic
AAGCCCGAAACGTATCCCTT+CGG 0.556116 5_1:+12645890 None:intergenic
ACACTAGTCTTCGTAGTCCC+CGG 0.559275 5_1:+12645619 None:intergenic
AATTTCCCCGGTTTCCCCGA+CGG 0.559331 5_1:-12646282 Msa0718410:CDS
AAGAGCGATTGACTAGCTAA+AGG 0.559368 5_1:-12641394 Msa0718410:exon
ATTAGGACCATCACCGGAGC+CGG 0.560496 5_1:+12646068 None:intergenic
AAGCTCTGCATCATCGGCAG+TGG 0.560600 5_1:-12646429 Msa0718410:CDS
ACTACGAAGACTAGTGTTGA+GGG 0.561326 5_1:-12645613 Msa0718410:CDS
GATTCGGTTATCGTCGCTAC+CGG 0.565517 5_1:-12646117 Msa0718410:CDS
TCTCGAGTCAGATATGATCA+AGG 0.573043 5_1:+12641120 None:intergenic
GGAGAATGTGGCGACAAAAG+AGG 0.573760 5_1:-12645752 Msa0718410:CDS
AATCCTCTTCGAAGGATGGA+TGG 0.574752 5_1:-12646355 Msa0718410:CDS
CTCAAACCAATCCTCTTCGA+AGG 0.575038 5_1:-12646363 Msa0718410:CDS
GATCTCGGTTCCAAATTTAG+CGG 0.579270 5_1:+12646218 None:intergenic
TATTTGCATCATTACAACAA+CGG 0.579863 5_1:+12641152 None:intergenic
GATGCAGAACATTTCCTGCA+AGG 0.584210 5_1:-12641436 Msa0718410:CDS
TTCGCCGCCGAGGATTCCGT+CGG 0.585796 5_1:+12646266 None:intergenic
CGGTGGTGGAGATTCAGCTA+TGG 0.589556 5_1:-12645962 Msa0718410:CDS
ATTCTCGACGTCAGTTGTGG+TGG 0.593260 5_1:+12646302 None:intergenic
GACTACGAAGACTAGTGTTG+AGG 0.594010 5_1:-12645614 Msa0718410:CDS
AAGTTTACATCATTCACCGA+AGG 0.594491 5_1:-12645906 Msa0718410:CDS
CCATCACCGGAGCCGGTGAA+CGG 0.597742 5_1:+12646075 None:intergenic
GGCACGGGCGGCGTATACGG+CGG 0.600378 5_1:+12646389 None:intergenic
CCACCACCGATCACTGCCAA+AGG 0.613847 5_1:+12645976 None:intergenic
TGGTGGAGATTCAGCTATGG+AGG 0.616555 5_1:-12645959 Msa0718410:CDS
TAAACCAATTGGAACAGTAG+TGG 0.616901 5_1:+12643305 None:intergenic
TGGGGAGAATAAGAAGCTTG+GGG 0.617354 5_1:-12645785 Msa0718410:CDS
CTAATGGTTACTGGAACCGT+GGG 0.623174 5_1:-12646050 Msa0718410:CDS
AACAAATAAAGATTCTAGCA+GGG 0.625675 5_1:+12641293 None:intergenic
AGTTTACATCATTCACCGAA+GGG 0.627428 5_1:-12645905 Msa0718410:CDS
TCAGCTTGTGCTGTATGTGA+CGG 0.630662 5_1:-12646024 Msa0718410:CDS
GGATTCCGTCGGGGAAACCG+GGG 0.631914 5_1:+12646277 None:intergenic
GGTGATTTGGAATTCAATGG+TGG 0.638272 5_1:-12645824 Msa0718410:CDS
GTTCCATGAGTTCGCCGCCG+AGG 0.639562 5_1:+12646256 None:intergenic
TGGCCATCCATCCTTCGAAG+AGG 0.649138 5_1:+12646352 None:intergenic
AAACCTTTGGCAGTGATCGG+TGG 0.660900 5_1:-12645979 Msa0718410:CDS
GGATTGGTTTGAGTTCGGCA+CGG 0.665823 5_1:+12646373 None:intergenic
CGCCGCCGAGGATTCCGTCG+GGG 0.669377 5_1:+12646268 None:intergenic
GTAACCATTAGGACCATCAC+CGG 0.674090 5_1:+12646062 None:intergenic
GGTATGTTGTGACGAAGCCG+GGG 0.674837 5_1:-12645636 Msa0718410:CDS
CAGCACAAGCTGAAATCCCA+CGG 0.675347 5_1:+12646034 None:intergenic
GGGGAGAATAAGAAGCTTGG+GGG 0.680934 5_1:-12645784 Msa0718410:CDS
TTCCCCGACGGAATCCTCGG+CGG 0.691557 5_1:-12646270 Msa0718410:CDS
GCCAACGACATCGCTCCAGG+AGG 0.696880 5_1:-12646333 Msa0718410:CDS
TTGGAACAGTAGTGGCAGAG+CGG 0.711658 5_1:+12643313 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATCAACAAAAAAAT+GGG - chr5_1:12644104-12644123 Msa0718410:intron 10.0%
!!! AAAATTTTAAATGTCTTAAT+TGG - chr5_1:12645639-12645658 Msa0718410:CDS 10.0%
!! TTAAATAATAACCAACAATA+AGG + chr5_1:12642367-12642386 None:intergenic 15.0%
!!! TTTTTCATATAATTTAGCAT+AGG - chr5_1:12642966-12642985 Msa0718410:intron 15.0%
!! ATATTAGAATAGTAAACAAA+AGG - chr5_1:12643421-12643440 Msa0718410:intron 15.0%
!! AAAAACTTATAACAGTATAT+AGG - chr5_1:12643832-12643851 Msa0718410:intron 15.0%
!! GTATAAAATCAACAAAAAAA+TGG - chr5_1:12644103-12644122 Msa0718410:intron 15.0%
!! TCTTAGTTTCATTTATTTAA+TGG - chr5_1:12645105-12645124 Msa0718410:intron 15.0%
!! CTTAGTTTCATTTATTTAAT+GGG - chr5_1:12645106-12645125 Msa0718410:intron 15.0%
!!! TTTTCTTATATTTTAGGTAA+TGG + chr5_1:12645357-12645376 None:intergenic 15.0%
!! TTAAATTTAAATTGATTGGT+AGG + chr5_1:12645380-12645399 None:intergenic 15.0%
!!! AACTTCAATTTAAATTTGTT+TGG - chr5_1:12645477-12645496 Msa0718410:intron 15.0%
!!! ACTTCAATTTAAATTTGTTT+GGG - chr5_1:12645478-12645497 Msa0718410:intron 15.0%
!! ATATATATCCATTAGTTAAA+AGG - chr5_1:12645874-12645893 Msa0718410:CDS 15.0%
!! TATTATTCAAAATTTGATTG+TGG - chr5_1:12646301-12646320 Msa0718410:CDS 15.0%
!! TTTGAGTAATGATAAGATTA+AGG - chr5_1:12641723-12641742 Msa0718410:intron 20.0%
!!! TAGTTCATTATTCATTTTAG+AGG - chr5_1:12642227-12642246 Msa0718410:intron 20.0%
!! TGGTTATTATTTAAGAGAAT+TGG - chr5_1:12642373-12642392 Msa0718410:intron 20.0%
!! ATTACTTATGAGTTTATCTA+AGG - chr5_1:12642539-12642558 Msa0718410:intron 20.0%
!! ATGAATGATATTCAACTAAA+GGG + chr5_1:12642788-12642807 None:intergenic 20.0%
!! TTGAATGATATTCAACTAAA+GGG + chr5_1:12642820-12642839 None:intergenic 20.0%
!! TTTGAATGATATTCAACTAA+AGG + chr5_1:12642821-12642840 None:intergenic 20.0%
!! TGATTGTATTATATCTTGAT+AGG - chr5_1:12643274-12643293 Msa0718410:intron 20.0%
!! TTATGTATGCAACTAATAAA+TGG + chr5_1:12645054-12645073 None:intergenic 20.0%
!!! TATATTTTAGGTAATGGTAA+TGG + chr5_1:12645351-12645370 None:intergenic 20.0%
!! GGCATTAAATTTAAATTGAT+TGG + chr5_1:12645384-12645403 None:intergenic 20.0%
!! AACTTTATAAATGATCCTAA+TGG + chr5_1:12645747-12645766 None:intergenic 20.0%
!! ATTAGGATCATTTATAAAGT+TGG - chr5_1:12645746-12645765 Msa0718410:CDS 20.0%
!! CAAATTATCTTTAAATGACA+CGG - chr5_1:12646072-12646091 Msa0718410:CDS 20.0%
!! ACAAATATAAGTATGTTTGT+GGG + chr5_1:12646360-12646379 None:intergenic 20.0%
!! AACAAATATAAGTATGTTTG+TGG + chr5_1:12646361-12646380 None:intergenic 20.0%
!! TTATGAACTTATCATTTGTT+GGG - chr5_1:12646379-12646398 Msa0718410:CDS 20.0%
! ATGATAAGATTAAGGTGATT+TGG - chr5_1:12641731-12641750 Msa0718410:intron 25.0%
!!! ATATAGCTATTTTATAACCC+AGG + chr5_1:12642281-12642300 None:intergenic 25.0%
! ATGTTATCTTAAATGTGGTA+GGG - chr5_1:12642438-12642457 Msa0718410:intron 25.0%
! ACAAAAACAGAATATGAACA+TGG + chr5_1:12642628-12642647 None:intergenic 25.0%
!!! ATTCTGTTTTTGTTTGAAGA+TGG - chr5_1:12642635-12642654 Msa0718410:intron 25.0%
! AACTAAAGGGATTTGAATAA+AGG + chr5_1:12642775-12642794 None:intergenic 25.0%
! GATGAATGATATTCAACTAA+AGG + chr5_1:12642789-12642808 None:intergenic 25.0%
!! TTACTTAAGTACCGTTATTA+TGG - chr5_1:12643210-12643229 Msa0718410:intron 25.0%
! ATGTGAATCTACCATAATAA+CGG + chr5_1:12643224-12643243 None:intergenic 25.0%
!! TTTTTGGACACATGATTATT+AGG - chr5_1:12643246-12643265 Msa0718410:intron 25.0%
!! TTATCTGATCTTCTAAGTTT+TGG + chr5_1:12643302-12643321 None:intergenic 25.0%
!!! AATGTGGTTGATAACTAATA+AGG - chr5_1:12643320-12643339 Msa0718410:CDS 25.0%
! AATAGTAAACAAAAGGAAGA+AGG - chr5_1:12643428-12643447 Msa0718410:intron 25.0%
! AGGATTTAAGGAAAGAAAAA+TGG + chr5_1:12643486-12643505 None:intergenic 25.0%
! TAACAGTATATAGGTTAGTA+TGG - chr5_1:12643841-12643860 Msa0718410:intron 25.0%
! AGAGAAAAATCTAAACCAAT+TGG + chr5_1:12644277-12644296 None:intergenic 25.0%
! CGAAAGTAAACAATACTATA+TGG - chr5_1:12644702-12644721 Msa0718410:intron 25.0%
!!! TTGTAGCTTGTTTTATTGTT+AGG - chr5_1:12645165-12645184 Msa0718410:intron 25.0%
!! TTTTATTGTTAGGTTAATGC+TGG - chr5_1:12645175-12645194 Msa0718410:intron 25.0%
! AATTCTATATCATATCATGC+AGG + chr5_1:12645255-12645274 None:intergenic 25.0%
!! GGTAGGTTTTCTTATATTTT+AGG + chr5_1:12645363-12645382 None:intergenic 25.0%
! AAAATGAAAACCAAATTCTG+AGG + chr5_1:12645568-12645587 None:intergenic 25.0%
!! TTTTCATCATGAGAAACAAA+AGG + chr5_1:12645718-12645737 None:intergenic 25.0%
! TGATGAAAATTTCTTCCATT+AGG - chr5_1:12645729-12645748 Msa0718410:CDS 25.0%
! ATCATTTATAAAGTTGGCAA+TGG - chr5_1:12645752-12645771 Msa0718410:CDS 25.0%
! AATACAGTTAAACAAGGATT+TGG + chr5_1:12645797-12645816 None:intergenic 25.0%
!! ATCCTTGTTTAACTGTATTT+AGG - chr5_1:12645798-12645817 Msa0718410:CDS 25.0%
! TTCCTAAATACAGTTAAACA+AGG + chr5_1:12645803-12645822 None:intergenic 25.0%
!!! CAATTTGTCCTTTTAACTAA+TGG + chr5_1:12645885-12645904 None:intergenic 25.0%
! TAAAAGGACAAATTGATCAT+TGG - chr5_1:12645890-12645909 Msa0718410:CDS 25.0%
! AAAAGGACAAATTGATCATT+GGG - chr5_1:12645891-12645910 Msa0718410:CDS 25.0%
!!! ACGCTAATATTTTTACAACA+TGG + chr5_1:12645966-12645985 None:intergenic 25.0%
! AACAAATAAAGATTCTAGCA+GGG + chr5_1:12646278-12646297 None:intergenic 25.0%
! GTTATGAACTTATCATTTGT+TGG - chr5_1:12646378-12646397 Msa0718410:CDS 25.0%
! TATTTGCATCATTACAACAA+CGG + chr5_1:12646419-12646438 None:intergenic 25.0%
!! AAAGGTTTGTTACGAAAGAT+CGG + chr5_1:12641577-12641596 None:intergenic 30.0%
! GCAACGTTTTTGACAAAATA+CGG - chr5_1:12641634-12641653 Msa0718410:intron 30.0%
! TAAGGTGATTTGGAATTCAA+TGG - chr5_1:12641741-12641760 Msa0718410:intron 30.0%
! AAAAGAGGTTTCTGATTTGA+AGG - chr5_1:12641831-12641850 Msa0718410:intron 30.0%
! TTTCTGATTTGAAGGTTTCT+GGG - chr5_1:12641839-12641858 Msa0718410:intron 30.0%
AATTAGAGCTTGATTCTGAT+GGG - chr5_1:12641911-12641930 Msa0718410:intron 30.0%
! ATAATTACATGTGTTGACAC+CGG - chr5_1:12642176-12642195 Msa0718410:intron 30.0%
TGCTTAGTTGTTATATCTGA+TGG - chr5_1:12642338-12642357 Msa0718410:intron 30.0%
TGGAGATGTTATCTTAAATG+TGG - chr5_1:12642433-12642452 Msa0718410:intron 30.0%
GATGTTATCTTAAATGTGGT+AGG - chr5_1:12642437-12642456 Msa0718410:intron 30.0%
ACTTATGAGTTTATCTAAGG+TGG - chr5_1:12642542-12642561 Msa0718410:intron 30.0%
TGTTTATTGGTGTATATGAC+TGG - chr5_1:12642567-12642586 Msa0718410:intron 30.0%
! TGACTGGTATTGAAATGTAA+TGG - chr5_1:12642583-12642602 Msa0718410:intron 30.0%
TTTGTTTGAAGATGGTTTGA+TGG - chr5_1:12642643-12642662 Msa0718410:intron 30.0%
ACTTCTTGTATATTTAGCTG+CGG - chr5_1:12643112-12643131 Msa0718410:intron 30.0%
!!! TGGTAGATTCACATCTTTTT+TGG - chr5_1:12643230-12643249 Msa0718410:intron 30.0%
ACTTAGAAGATCAGATAATG+TGG - chr5_1:12643304-12643323 Msa0718410:intron 30.0%
! GGAACACAAAACTTTGTTTA+TGG - chr5_1:12643341-12643360 Msa0718410:CDS 30.0%
! AAACTTTGTTTATGGAGCAA+AGG - chr5_1:12643349-12643368 Msa0718410:CDS 30.0%
ATGAATCATGAGAAGAAAGT+GGG + chr5_1:12643533-12643552 None:intergenic 30.0%
GATTTGACTGAAAAGAACTT+TGG + chr5_1:12643608-12643627 None:intergenic 30.0%
AACTTTGCTAATTTCACCTT+GGG + chr5_1:12643707-12643726 None:intergenic 30.0%
CAAAGTTGCTTGTGATATTA+AGG - chr5_1:12643720-12643739 Msa0718410:intron 30.0%
TTCATAGTGTAAAAGAAAGC+AGG - chr5_1:12643904-12643923 Msa0718410:intron 30.0%
AAAGGAGTAATATCCAAATC+AGG - chr5_1:12643956-12643975 Msa0718410:intron 30.0%
AAATCATTTATGGCCTGATT+TGG + chr5_1:12643972-12643991 None:intergenic 30.0%
! AATCAGGCCATAAATGATTT+TGG - chr5_1:12643972-12643991 Msa0718410:intron 30.0%
!! ATAAACCCAACACTACTTTT+AGG - chr5_1:12644068-12644087 Msa0718410:intron 30.0%
! AAAAATGGGTTTGATAACTC+AGG - chr5_1:12644118-12644137 Msa0718410:intron 30.0%
CTCTCAAAATACATTAACTG+AGG - chr5_1:12644293-12644312 Msa0718410:intron 30.0%
TCAAAATACATTAACTGAGG+TGG - chr5_1:12644296-12644315 Msa0718410:intron 30.0%
ATTGGCAAGTCTACAAATAA+TGG - chr5_1:12644514-12644533 Msa0718410:intron 30.0%
! AAACCATTGATTGACATTCT+AGG + chr5_1:12644559-12644578 None:intergenic 30.0%
! TTTGAGACTTTGTTTAAGCA+GGG + chr5_1:12644745-12644764 None:intergenic 30.0%
!! TATATTGAAGAGTGATGGAT+AGG + chr5_1:12644904-12644923 None:intergenic 30.0%
TGCAATATATTGAAGAGTGA+TGG + chr5_1:12644909-12644928 None:intergenic 30.0%
GTTCAAAACAAGGAAAAGTT+AGG + chr5_1:12644932-12644951 None:intergenic 30.0%
AGAAACACAAGTTCAAAACA+AGG + chr5_1:12644942-12644961 None:intergenic 30.0%
TAAGTTGTAAACCTATCATG+TGG - chr5_1:12644969-12644988 Msa0718410:intron 30.0%
AAATTCACATACCACATGAT+AGG + chr5_1:12644983-12645002 None:intergenic 30.0%
! TTGAGTTTAAAGTTAGTGTC+TGG - chr5_1:12645008-12645027 Msa0718410:intron 30.0%
ACTAATAAATGGAACAGAGA+TGG + chr5_1:12645043-12645062 None:intergenic 30.0%
AAAACAAGCTACAATGACAT+CGG + chr5_1:12645159-12645178 None:intergenic 30.0%
GAGTTTACAACATGTTAACT+CGG - chr5_1:12645302-12645321 Msa0718410:intron 30.0%
TATGCATTTGACATTTGACA+AGG + chr5_1:12645405-12645424 None:intergenic 30.0%
TTCGATCAATTCATTTAGCT+GGG - chr5_1:12645426-12645445 Msa0718410:intron 30.0%
ATGTCTTAATTGGATTTGTC+TGG - chr5_1:12645649-12645668 Msa0718410:CDS 30.0%
! ATTTGAAGCATAACCTAAGT+TGG + chr5_1:12646057-12646076 None:intergenic 30.0%
GAACAAATAAAGATTCTAGC+AGG + chr5_1:12646279-12646298 None:intergenic 30.0%
AAAACTAAGCTCTGCATCAT+CGG - chr5_1:12641133-12641152 Msa0718410:three_prime_UTR 35.0%
ATCAACCTTAGAAACCGTTT+CGG + chr5_1:12641380-12641399 None:intergenic 35.0%
! ATTTCTCTTCTCGTCCTTTT+AGG - chr5_1:12641398-12641417 Msa0718410:exon 35.0%
! TTTCTCTTCTCGTCCTTTTA+GGG - chr5_1:12641399-12641418 Msa0718410:exon 35.0%
GAATCAGTGAAAACCCTAAA+AGG + chr5_1:12641415-12641434 None:intergenic 35.0%
GATCTTTCGTAACAAACCTT+TGG - chr5_1:12641576-12641595 Msa0718410:intron 35.0%
AAGTTTACATCATTCACCGA+AGG - chr5_1:12641662-12641681 Msa0718410:intron 35.0%
AGTTTACATCATTCACCGAA+GGG - chr5_1:12641663-12641682 Msa0718410:intron 35.0%
! GTTTCTGATTTGAAGGTTTC+TGG - chr5_1:12641838-12641857 Msa0718410:intron 35.0%
CAATTAGAGCTTGATTCTGA+TGG - chr5_1:12641910-12641929 Msa0718410:intron 35.0%
TATTGATGTTGACATGTCAG+TGG + chr5_1:12642128-12642147 None:intergenic 35.0%
TCTGATGGAATCCTTATTGT+TGG - chr5_1:12642353-12642372 Msa0718410:intron 35.0%
AAGCTTGGTTTAACACTCAA+TGG + chr5_1:12642414-12642433 None:intergenic 35.0%
ATTGAGTGTTAAACCAAGCT+TGG - chr5_1:12642413-12642432 Msa0718410:intron 35.0%
TAAGATAACATCTCCAAGCT+TGG + chr5_1:12642429-12642448 None:intergenic 35.0%
TTGTATAGACTGTGATAAGC+AGG - chr5_1:12642509-12642528 Msa0718410:intron 35.0%
! ATCTAAGGTGGAGTGTTTAT+TGG - chr5_1:12642554-12642573 Msa0718410:intron 35.0%
TTTGAAGATGGTTTGATGGA+AGG - chr5_1:12642647-12642666 Msa0718410:intron 35.0%
! TATTAGTTTACCAAACCCCA+GGG + chr5_1:12642717-12642736 None:intergenic 35.0%
! TTATTAGTTTACCAAACCCC+AGG + chr5_1:12642718-12642737 None:intergenic 35.0%
ACCAGGAACAGTAAAAAGTT+GGG + chr5_1:12643025-12643044 None:intergenic 35.0%
AACCAGGAACAGTAAAAAGT+TGG + chr5_1:12643026-12643045 None:intergenic 35.0%
! AACTTTTTACTGTTCCTGGT+TGG - chr5_1:12643025-12643044 Msa0718410:intron 35.0%
! ACTTTTTACTGTTCCTGGTT+GGG - chr5_1:12643026-12643045 Msa0718410:intron 35.0%
TGAAGGCTTGATTATGTGAT+TGG + chr5_1:12643154-12643173 None:intergenic 35.0%
ATAATCAAGCCTTCAAACCA+TGG - chr5_1:12643159-12643178 Msa0718410:intron 35.0%
CTACAAGCATAGAATGAACT+CGG - chr5_1:12643383-12643402 Msa0718410:CDS 35.0%
GATCTGTCACATAGGATTTA+AGG + chr5_1:12643498-12643517 None:intergenic 35.0%
CATGAATCATGAGAAGAAAG+TGG + chr5_1:12643534-12643553 None:intergenic 35.0%
TTACTAGATGTGAATGAGGA+GGG + chr5_1:12643563-12643582 None:intergenic 35.0%
! TTATTGGAGACATGCTGATT+GGG + chr5_1:12643671-12643690 None:intergenic 35.0%
ACTTTGCTAATTTCACCTTG+GGG + chr5_1:12643706-12643725 None:intergenic 35.0%
CAACTTTGCTAATTTCACCT+TGG + chr5_1:12643708-12643727 None:intergenic 35.0%
CTTGTGATATTAAGGATCAG+TGG - chr5_1:12643728-12643747 Msa0718410:intron 35.0%
TAAACCAATTGGAACAGTAG+TGG + chr5_1:12644266-12644285 None:intergenic 35.0%
ATTGACATTCTAGGCATAAC+TGG + chr5_1:12644550-12644569 None:intergenic 35.0%
ATGCCTAGAATGTCAATCAA+TGG - chr5_1:12644553-12644572 Msa0718410:intron 35.0%
CTACAACTGTTTGTATGCTA+TGG + chr5_1:12644635-12644654 None:intergenic 35.0%
TTGCATGTTAGATGCGTTTA+TGG + chr5_1:12644667-12644686 None:intergenic 35.0%
TTTGTTTAAGCAGGGAGATA+AGG + chr5_1:12644737-12644756 None:intergenic 35.0%
! GTTTGAGACTTTGTTTAAGC+AGG + chr5_1:12644746-12644765 None:intergenic 35.0%
CATAGCAAACATGAAACGAT+GGG + chr5_1:12644785-12644804 None:intergenic 35.0%
TCATAGCAAACATGAAACGA+TGG + chr5_1:12644786-12644805 None:intergenic 35.0%
AGGTTTCATCACATCAAAGA+AGG + chr5_1:12644837-12644856 None:intergenic 35.0%
AACATGTTAACTCGGCATTA+TGG - chr5_1:12645310-12645329 Msa0718410:intron 35.0%
GTTCGATCAATTCATTTAGC+TGG - chr5_1:12645425-12645444 Msa0718410:intron 35.0%
ACATGTCACAGACGAAATTT+GGG + chr5_1:12645453-12645472 None:intergenic 35.0%
TACATGTCACAGACGAAATT+TGG + chr5_1:12645454-12645473 None:intergenic 35.0%
! AATTGGATTTGTCTGGAACT+TGG - chr5_1:12645656-12645675 Msa0718410:CDS 35.0%
AAAAGGTTATCAGTCGATCA+GGG + chr5_1:12645701-12645720 None:intergenic 35.0%
ATACACACGAAAGAACAATG+TGG + chr5_1:12645922-12645941 None:intergenic 35.0%
TTAGCTTCGAAAGTTATTGC+TGG - chr5_1:12645995-12646014 Msa0718410:CDS 35.0%
ATTAAGCATCTTGTGAGTTC+TGG + chr5_1:12646204-12646223 None:intergenic 35.0%
! CTTATCATTTGTTGGGTCAA+TGG - chr5_1:12646386-12646405 Msa0718410:CDS 35.0%
!!! GATGCAGAGCTTAGTTTTGA+CGG + chr5_1:12641131-12641150 None:intergenic 40.0%
!! GAAGAGGATTGGTTTGAGTT+CGG + chr5_1:12641203-12641222 None:intergenic 40.0%
!! CAAATTTAGCGGACTGTTGA+CGG + chr5_1:12641342-12641361 None:intergenic 40.0%
GATCTCGGTTCCAAATTTAG+CGG + chr5_1:12641353-12641372 None:intergenic 40.0%
ACGTACTGTTGAAGCTGATT+CGG - chr5_1:12641435-12641454 Msa0718410:CDS 40.0%
AACAAACCTTTGGCAGTGAT+CGG - chr5_1:12641586-12641605 Msa0718410:intron 40.0%
! GGTGATTTGGAATTCAATGG+TGG - chr5_1:12641744-12641763 Msa0718410:intron 40.0%
TTGGAATTCAATGGTGGTTG+AGG - chr5_1:12641750-12641769 Msa0718410:intron 40.0%
ATGGGGAGAATAAGAAGCTT+GGG - chr5_1:12641782-12641801 Msa0718410:intron 40.0%
TCTGGGTTGTTCTTTGCAAT+TGG - chr5_1:12641856-12641875 Msa0718410:intron 40.0%
CTGGGTTGTTCTTTGCAATT+GGG - chr5_1:12641857-12641876 Msa0718410:intron 40.0%
! ACTACGAAGACTAGTGTTGA+GGG - chr5_1:12641955-12641974 Msa0718410:intron 40.0%
! ATGCCTTCGATTAGAAGTGT+CGG - chr5_1:12642201-12642220 Msa0718410:intron 40.0%
TTGTGTGTGAATGTGATTCC+TGG - chr5_1:12642260-12642279 Msa0718410:intron 40.0%
TGTGTGTGAATGTGATTCCT+GGG - chr5_1:12642261-12642280 Msa0718410:intron 40.0%
ATGAACTCACCTTCATGTCA+TGG - chr5_1:12642480-12642499 Msa0718410:intron 40.0%
CAATACAGACCATGACATGA+AGG + chr5_1:12642492-12642511 None:intergenic 40.0%
TACACCATTATACTTTGCCC+TGG - chr5_1:12642697-12642716 Msa0718410:intron 40.0%
ACACCATTATACTTTGCCCT+GGG - chr5_1:12642698-12642717 Msa0718410:intron 40.0%
! CCTAGCATATTTTCAGCTAC+AGG + chr5_1:12642884-12642903 None:intergenic 40.0%
CCTGTAGCTGAAAATATGCT+AGG - chr5_1:12642881-12642900 Msa0718410:intron 40.0%
TTACATAGAGACGACGAATG+AGG + chr5_1:12642943-12642962 None:intergenic 40.0%
AAGTTGGGGAATCGATGAAT+AGG + chr5_1:12643010-12643029 None:intergenic 40.0%
CCAGGAACAGTAAAAAGTTG+GGG + chr5_1:12643024-12643043 None:intergenic 40.0%
! CTTTTTACTGTTCCTGGTTG+GGG - chr5_1:12643027-12643046 Msa0718410:intron 40.0%
TCAATACCTTGTCTGATGCA+AGG + chr5_1:12643064-12643083 None:intergenic 40.0%
CCTTCAAACCATGGTTAGAT+GGG - chr5_1:12643168-12643187 Msa0718410:intron 40.0%
CTTCAAACCATGGTTAGATG+GGG - chr5_1:12643169-12643188 Msa0718410:intron 40.0%
CGAGTTCATTCTATGCTTGT+AGG + chr5_1:12643385-12643404 None:intergenic 40.0%
AAAAGGAAGAAGGAAACCAG+AGG - chr5_1:12643438-12643457 Msa0718410:intron 40.0%
TGGAAGAAGATCTGTCACAT+AGG + chr5_1:12643506-12643525 None:intergenic 40.0%
TACTAGATGTGAATGAGGAG+GGG + chr5_1:12643562-12643581 None:intergenic 40.0%
GTTACTAGATGTGAATGAGG+AGG + chr5_1:12643564-12643583 None:intergenic 40.0%
GGAGTTACTAGATGTGAATG+AGG + chr5_1:12643567-12643586 None:intergenic 40.0%
TCTACACAAGGAGATTTAGG+GGG + chr5_1:12643636-12643655 None:intergenic 40.0%
GTCTACACAAGGAGATTTAG+GGG + chr5_1:12643637-12643656 None:intergenic 40.0%
GGTCTACACAAGGAGATTTA+GGG + chr5_1:12643638-12643657 None:intergenic 40.0%
AGGTCTACACAAGGAGATTT+AGG + chr5_1:12643639-12643658 None:intergenic 40.0%
CTTATTGGAGACATGCTGAT+TGG + chr5_1:12643672-12643691 None:intergenic 40.0%
! ATTGAAGCTGGGGAGAATTT+TGG - chr5_1:12643770-12643789 Msa0718410:intron 40.0%
CAAACACTTAACACCTCGAT+CGG + chr5_1:12643807-12643826 None:intergenic 40.0%
AACATCGAGCTTGAAGTGAA+AGG - chr5_1:12643938-12643957 Msa0718410:intron 40.0%
! CAGGCCATAAATGATTTTGG+TGG - chr5_1:12643975-12643994 Msa0718410:intron 40.0%
GCAGCCACCAAAATCATTTA+TGG + chr5_1:12643982-12644001 None:intergenic 40.0%
!! AACCCAACACTACTTTTAGG+AGG - chr5_1:12644071-12644090 Msa0718410:intron 40.0%
TGCCTCCTAAAAGTAGTGTT+GGG + chr5_1:12644076-12644095 None:intergenic 40.0%
TTGCCTCCTAAAAGTAGTGT+TGG + chr5_1:12644077-12644096 None:intergenic 40.0%
GTGTTGAAAAATGCAACGCT+TGG - chr5_1:12644211-12644230 Msa0718410:intron 40.0%
CGTACAAAGCTTACAACTCT+CGG - chr5_1:12644418-12644437 Msa0718410:intron 40.0%
!! GAAGAGTGATGGATAGGAAT+GGG + chr5_1:12644898-12644917 None:intergenic 40.0%
!! TGAAGAGTGATGGATAGGAA+TGG + chr5_1:12644899-12644918 None:intergenic 40.0%
!! GGTAATGGTAATGGTTACAC+AGG + chr5_1:12645342-12645361 None:intergenic 40.0%
CATGTCACAGACGAAATTTG+GGG + chr5_1:12645452-12645471 None:intergenic 40.0%
CTTTGTAGGTCCTCAGAATT+TGG - chr5_1:12645555-12645574 Msa0718410:intron 40.0%
GATGACAGCAAACACGAAAA+GGG + chr5_1:12645592-12645611 None:intergenic 40.0%
TGATGACAGCAAACACGAAA+AGG + chr5_1:12645593-12645612 None:intergenic 40.0%
CAAAAGGTTATCAGTCGATC+AGG + chr5_1:12645702-12645721 None:intergenic 40.0%
TGCAGTTAGTGATCCAACTT+AGG - chr5_1:12646041-12646060 Msa0718410:CDS 40.0%
!!! TGACACGGAGATCTTGTTTT+TGG - chr5_1:12646087-12646106 Msa0718410:CDS 40.0%
!!! GAGATCTTGTTTTTGGTGCA+GGG - chr5_1:12646094-12646113 Msa0718410:CDS 40.0%
! AAGAGCGATTGACTAGCTAA+AGG - chr5_1:12646174-12646193 Msa0718410:CDS 40.0%
! AGAGCGATTGACTAGCTAAA+GGG - chr5_1:12646175-12646194 Msa0718410:CDS 40.0%
TCTCGAGTCAGATATGATCA+AGG + chr5_1:12646451-12646470 None:intergenic 40.0%
!!! AGAGCTTAGTTTTGACGGTG+GGG + chr5_1:12641126-12641145 None:intergenic 45.0%
!!! CAGAGCTTAGTTTTGACGGT+GGG + chr5_1:12641127-12641146 None:intergenic 45.0%
CTCAAACCAATCCTCTTCGA+AGG - chr5_1:12641205-12641224 Msa0718410:three_prime_UTR 45.0%
AACCAATCCTCTTCGAAGGA+TGG - chr5_1:12641209-12641228 Msa0718410:three_prime_UTR 45.0%
ATCCATCCTTCGAAGAGGAT+TGG + chr5_1:12641214-12641233 None:intergenic 45.0%
AATCCTCTTCGAAGGATGGA+TGG - chr5_1:12641213-12641232 Msa0718410:three_prime_UTR 45.0%
GAAATTCTCGACGTCAGTTG+TGG + chr5_1:12641272-12641291 None:intergenic 45.0%
CGTCAACAGTCCGCTAAATT+TGG - chr5_1:12641340-12641359 Msa0718410:three_prime_UTR 45.0%
AACCGAGATCTTCACCGAAA+CGG - chr5_1:12641363-12641382 Msa0718410:three_prime_UTR 45.0%
AACCGTTTCGGTGAAGATCT+CGG + chr5_1:12641368-12641387 None:intergenic 45.0%
CTTCACCGAAACGGTTTCTA+AGG - chr5_1:12641372-12641391 Msa0718410:three_prime_UTR 45.0%
GTAACCATTAGGACCATCAC+CGG + chr5_1:12641509-12641528 None:intergenic 45.0%
GTGATGGTCCTAATGGTTAC+TGG - chr5_1:12641509-12641528 Msa0718410:intron 45.0%
CTAATGGTTACTGGAACCGT+GGG - chr5_1:12641518-12641537 Msa0718410:intron 45.0%
TCAGCTTGTGCTGTATGTGA+CGG - chr5_1:12641544-12641563 Msa0718410:intron 45.0%
TTCACCGAAGGGATACGTTT+CGG - chr5_1:12641674-12641693 Msa0718410:intron 45.0%
! TCAATGGTGGTTGAGGCTTT+TGG - chr5_1:12641757-12641776 Msa0718410:intron 45.0%
!! TGGTTGAGGCTTTTGGAGAT+GGG - chr5_1:12641764-12641783 Msa0718410:intron 45.0%
GATGGGGAGAATAAGAAGCT+TGG - chr5_1:12641781-12641800 Msa0718410:intron 45.0%
TGGGGAGAATAAGAAGCTTG+GGG - chr5_1:12641783-12641802 Msa0718410:intron 45.0%
TAAGAAGCTTGGGGGTTTGA+AGG - chr5_1:12641792-12641811 Msa0718410:intron 45.0%
CTTTGCAATTGGGCATGAAC+CGG - chr5_1:12641867-12641886 Msa0718410:intron 45.0%
! TGAACCGGCGACAAAGTTTT+TGG - chr5_1:12641882-12641901 Msa0718410:intron 45.0%
CCATCCAAAAACTTTGTCGC+CGG + chr5_1:12641889-12641908 None:intergenic 45.0%
GACTACGAAGACTAGTGTTG+AGG - chr5_1:12641954-12641973 Msa0718410:intron 45.0%
!!! TTGAGGGTGTTTTTGCTGCT+GGG - chr5_1:12641971-12641990 Msa0718410:intron 45.0%
AGACAAGCTATTACTGCTGC+TGG - chr5_1:12642015-12642034 Msa0718410:intron 45.0%
TGATGTTGACATGTCAGTGG+CGG + chr5_1:12642125-12642144 None:intergenic 45.0%
! CTTCTAATCGAAGGCATGAC+CGG + chr5_1:12642198-12642217 None:intergenic 45.0%
!! TGCCTTCGATTAGAAGTGTC+GGG - chr5_1:12642202-12642221 Msa0718410:intron 45.0%
CACCATTATACTTTGCCCTG+GGG - chr5_1:12642699-12642718 Msa0718410:intron 45.0%
AACCCCAGGGCAAAGTATAA+TGG + chr5_1:12642704-12642723 None:intergenic 45.0%
TTATACTTTGCCCTGGGGTT+TGG - chr5_1:12642704-12642723 Msa0718410:intron 45.0%
! CCCCAACTTTTTACTGTTCC+TGG - chr5_1:12643021-12643040 Msa0718410:intron 45.0%
GTTAGTCCTTGCATCAGACA+AGG - chr5_1:12643055-12643074 Msa0718410:intron 45.0%
GTGATTGGAAGTAACCAGTC+AGG + chr5_1:12643139-12643158 None:intergenic 45.0%
GCCTTCAAACCATGGTTAGA+TGG - chr5_1:12643167-12643186 Msa0718410:intron 45.0%
CCCATCTAACCATGGTTTGA+AGG + chr5_1:12643171-12643190 None:intergenic 45.0%
ATGAGAAGAAAGTGGGACAG+TGG + chr5_1:12643526-12643545 None:intergenic 45.0%
AACTTTGGACCAGAGTCACA+TGG + chr5_1:12643593-12643612 None:intergenic 45.0%
CCATGAATGAGGTCTACACA+AGG + chr5_1:12643648-12643667 None:intergenic 45.0%
CCTTGTGTAGACCTCATTCA+TGG - chr5_1:12643645-12643664 Msa0718410:intron 45.0%
CTAATTTCACCTTGGGGACA+AGG + chr5_1:12643700-12643719 None:intergenic 45.0%
CAATTGCAGCTGTTGCGTAT+TGG + chr5_1:12644149-12644168 None:intergenic 45.0%
GATCTTGCTTACCACTATCC+TGG + chr5_1:12644173-12644192 None:intergenic 45.0%
CAACACAATCGCAGAAGTCA+AGG + chr5_1:12644197-12644216 None:intergenic 45.0%
TCTGCCACTACTGTTCCAAT+TGG - chr5_1:12644259-12644278 Msa0718410:intron 45.0%
TCATATCACCTCATGGCTCA+GGG - chr5_1:12644319-12644338 Msa0718410:intron 45.0%
! AGGGCTTTTCTTCCACCTTT+GGG - chr5_1:12644338-12644357 Msa0718410:intron 45.0%
AAGTTTAGCAACCACTGGTG+AGG + chr5_1:12644383-12644402 None:intergenic 45.0%
CTCGAAAGTTTAGCAACCAC+TGG + chr5_1:12644388-12644407 None:intergenic 45.0%
CTCGCAAGTTTGAGGACAAT+TGG - chr5_1:12644496-12644515 Msa0718410:intron 45.0%
GACATTCTAGGCATAACTGG+AGG + chr5_1:12644547-12644566 None:intergenic 45.0%
TAGGAATGGGATTCCCTCAT+TGG + chr5_1:12644885-12644904 None:intergenic 45.0%
TGTTAACTCGGCATTATGGC+AGG - chr5_1:12645314-12645333 Msa0718410:intron 45.0%
GTTAACTCGGCATTATGGCA+GGG - chr5_1:12645315-12645334 Msa0718410:intron 45.0%
TGGTATGACACATCACGAAC+AGG + chr5_1:12645524-12645543 None:intergenic 45.0%
CCTACAAAGCATGGAGAAAG+TGG + chr5_1:12645544-12645563 None:intergenic 45.0%
CCACTTTCTCCATGCTTTGT+AGG - chr5_1:12645541-12645560 Msa0718410:intron 45.0%
! TTCTGAGGACCTACAAAGCA+TGG + chr5_1:12645553-12645572 None:intergenic 45.0%
!!! GGAGATCTTGTTTTTGGTGC+AGG - chr5_1:12646093-12646112 Msa0718410:CDS 45.0%
GATGCAGAACATTTCCTGCA+AGG - chr5_1:12646132-12646151 Msa0718410:CDS 45.0%
GAACATTTCCTGCAAGGAGT+TGG - chr5_1:12646138-12646157 Msa0718410:CDS 45.0%
GTTGTAAACCAACTCCTTGC+AGG + chr5_1:12646149-12646168 None:intergenic 45.0%
! GCAAGGAGTTGGTTTACAAC+AGG - chr5_1:12646149-12646168 Msa0718410:CDS 45.0%
!!! CTTAGTTTTGACGGTGGGGA+GGG + chr5_1:12641122-12641141 None:intergenic 50.0%
!!! GCAGAGCTTAGTTTTGACGG+TGG + chr5_1:12641128-12641147 None:intergenic 50.0%
!! GATTGGTTTGAGTTCGGCAC+GGG + chr5_1:12641197-12641216 None:intergenic 50.0%
!! GGATTGGTTTGAGTTCGGCA+CGG + chr5_1:12641198-12641217 None:intergenic 50.0%
ATTCTCGACGTCAGTTGTGG+TGG + chr5_1:12641269-12641288 None:intergenic 50.0%
ACTGACGTCGAGAATTTCCC+CGG - chr5_1:12641274-12641293 Msa0718410:three_prime_UTR 50.0%
! GATTCGGTTATCGTCGCTAC+CGG - chr5_1:12641451-12641470 Msa0718410:CDS 50.0%
TAACCGTTTCGCAACAGCTC+CGG + chr5_1:12641473-12641492 None:intergenic 50.0%
CCACGGTTCCAGTAACCATT+AGG + chr5_1:12641520-12641539 None:intergenic 50.0%
CCTAATGGTTACTGGAACCG+TGG - chr5_1:12641517-12641536 Msa0718410:intron 50.0%
CAGCACAAGCTGAAATCCCA+CGG + chr5_1:12641537-12641556 None:intergenic 50.0%
AAACCTTTGGCAGTGATCGG+TGG - chr5_1:12641589-12641608 Msa0718410:intron 50.0%
TGGTGGAGATTCAGCTATGG+AGG - chr5_1:12641609-12641628 Msa0718410:intron 50.0%
TCACCGAAGGGATACGTTTC+GGG - chr5_1:12641675-12641694 Msa0718410:intron 50.0%
AAGCCCGAAACGTATCCCTT+CGG + chr5_1:12641681-12641700 None:intergenic 50.0%
!! GTGGTTGAGGCTTTTGGAGA+TGG - chr5_1:12641763-12641782 Msa0718410:intron 50.0%
!! GGTTGAGGCTTTTGGAGATG+GGG - chr5_1:12641765-12641784 Msa0718410:intron 50.0%
GGGGAGAATAAGAAGCTTGG+GGG - chr5_1:12641784-12641803 Msa0718410:intron 50.0%
GGGTTTGAAGGTGGAGAATG+TGG - chr5_1:12641804-12641823 Msa0718410:intron 50.0%
GGAGAATGTGGCGACAAAAG+AGG - chr5_1:12641816-12641835 Msa0718410:intron 50.0%
!! CCGGCGACAAAGTTTTTGGA+TGG - chr5_1:12641886-12641905 Msa0718410:intron 50.0%
TGGGTATGTTGTGACGAAGC+CGG - chr5_1:12641930-12641949 Msa0718410:intron 50.0%
!! ACACTAGTCTTCGTAGTCCC+CGG + chr5_1:12641952-12641971 None:intergenic 50.0%
!!! GTTGAGGGTGTTTTTGCTGC+TGG - chr5_1:12641970-12641989 Msa0718410:intron 50.0%
!!! TGAGGGTGTTTTTGCTGCTG+GGG - chr5_1:12641972-12641991 Msa0718410:intron 50.0%
! TTTTGCTGCTGGGGATGTTC+AGG - chr5_1:12641981-12642000 Msa0718410:intron 50.0%
GCTATTACTGCTGCTGGATC+TGG - chr5_1:12642021-12642040 Msa0718410:intron 50.0%
!! GCCTTCGATTAGAAGTGTCG+GGG - chr5_1:12642203-12642222 Msa0718410:intron 50.0%
GACTAACAAACTCCCCAACC+AGG + chr5_1:12643042-12643061 None:intergenic 50.0%
TATTTAGCTGCGGACCTGAC+TGG - chr5_1:12643122-12643141 Msa0718410:intron 50.0%
ATGCATGCCCCATCTAACCA+TGG + chr5_1:12643179-12643198 None:intergenic 50.0%
GGAAACCAGAGGTTACTCTG+CGG - chr5_1:12643449-12643468 Msa0718410:intron 50.0%
AACTCCCATCCATGTGACTC+TGG - chr5_1:12643581-12643600 Msa0718410:intron 50.0%
TGGACCAGAGTCACATGGAT+GGG + chr5_1:12643588-12643607 None:intergenic 50.0%
TTGGACCAGAGTCACATGGA+TGG + chr5_1:12643589-12643608 None:intergenic 50.0%
! TGCTGATTGGGCCATGAATG+AGG + chr5_1:12643659-12643678 None:intergenic 50.0%
! GGGGACAAGGTGAGTCTTAT+TGG + chr5_1:12643687-12643706 None:intergenic 50.0%
TAAGACTCACCTTGTCCCCA+AGG - chr5_1:12643688-12643707 Msa0718410:intron 50.0%
TAGCTGCGATGCATTGAAGC+TGG - chr5_1:12643758-12643777 Msa0718410:intron 50.0%
AGCTGCGATGCATTGAAGCT+GGG - chr5_1:12643759-12643778 Msa0718410:intron 50.0%
GGAGCATAGTTATCCGATCG+AGG - chr5_1:12643791-12643810 Msa0718410:intron 50.0%
GCTGCAATTGTCCAGGATAG+TGG - chr5_1:12644159-12644178 Msa0718410:intron 50.0%
TTGGAACAGTAGTGGCAGAG+CGG + chr5_1:12644258-12644277 None:intergenic 50.0%
GAGGTGGTCATATCACCTCA+TGG - chr5_1:12644312-12644331 Msa0718410:intron 50.0%
GTCATATCACCTCATGGCTC+AGG - chr5_1:12644318-12644337 Msa0718410:intron 50.0%
AAGAAAAGCCCTGAGCCATG+AGG + chr5_1:12644330-12644349 None:intergenic 50.0%
! CAGGGCTTTTCTTCCACCTT+TGG - chr5_1:12644337-12644356 Msa0718410:intron 50.0%
! GGGCTTTTCTTCCACCTTTG+GGG - chr5_1:12644339-12644358 Msa0718410:intron 50.0%
! TTTCTGGGCTAGAACCCCAA+AGG + chr5_1:12644356-12644375 None:intergenic 50.0%
CACTGGTGAGGCAGATTTCT+GGG + chr5_1:12644371-12644390 None:intergenic 50.0%
GTGCTAGACTCGCAAGTTTG+AGG - chr5_1:12644488-12644507 Msa0718410:intron 50.0%
! AGATGCTGCTTGACAGAGCT+AGG + chr5_1:12644857-12644876 None:intergenic 50.0%
CAGCATCTGAGCACCAATGA+GGG - chr5_1:12644869-12644888 Msa0718410:intron 50.0%
CATCACGAACAGGATGCTCA+AGG + chr5_1:12645514-12645533 None:intergenic 50.0%
!! CGTGTTTGCTGTCATCACAC+TGG - chr5_1:12645596-12645615 Msa0718410:CDS 50.0%
!!! TGTTTTTGGTGCAGGGTGCA+TGG - chr5_1:12646101-12646120 Msa0718410:CDS 50.0%
!!! GCTTAGTTTTGACGGTGGGG+AGG + chr5_1:12641123-12641142 None:intergenic 55.0%
AAGCTCTGCATCATCGGCAG+TGG - chr5_1:12641139-12641158 Msa0718410:three_prime_UTR 55.0%
TGGCCATCCATCCTTCGAAG+AGG + chr5_1:12641219-12641238 None:intergenic 55.0%
! CGTCAGTTGTGGTGGTGAGT+TGG + chr5_1:12641261-12641280 None:intergenic 55.0%
AATTTCCCCGGTTTCCCCGA+CGG - chr5_1:12641286-12641305 Msa0718410:three_prime_UTR 55.0%
CTACCGGAGCTGTTGCGAAA+CGG - chr5_1:12641467-12641486 Msa0718410:intron 55.0%
GCGAAACGGTTACCGTTCAC+CGG - chr5_1:12641481-12641500 Msa0718410:intron 55.0%
ATTAGGACCATCACCGGAGC+CGG + chr5_1:12641503-12641522 None:intergenic 55.0%
!! CGGTGGTGGAGATTCAGCTA+TGG - chr5_1:12641606-12641625 Msa0718410:intron 55.0%
GAAGCTTGGGGGTTTGAAGG+TGG - chr5_1:12641795-12641814 Msa0718410:intron 55.0%
GGGTATGTTGTGACGAAGCC+GGG - chr5_1:12641931-12641950 Msa0718410:intron 55.0%
GGTATGTTGTGACGAAGCCG+GGG - chr5_1:12641932-12641951 Msa0718410:intron 55.0%
GCCCCGACACTTCTAATCGA+AGG + chr5_1:12642207-12642226 None:intergenic 55.0%
TGACTCCGCAGAGTAACCTC+TGG + chr5_1:12643457-12643476 None:intergenic 55.0%
GCTGCGATGCATTGAAGCTG+GGG - chr5_1:12643760-12643779 Msa0718410:intron 55.0%
CGCAACAGCTGCAATTGTCC+AGG - chr5_1:12644152-12644171 Msa0718410:intron 55.0%
CCACTGGTGAGGCAGATTTC+TGG + chr5_1:12644372-12644391 None:intergenic 55.0%
CCAGAAATCTGCCTCACCAG+TGG - chr5_1:12644369-12644388 Msa0718410:intron 55.0%
!! GATGGGTTGCACATGCACTC+TGG + chr5_1:12644768-12644787 None:intergenic 55.0%
GCTATGAACTCGACAACGCG+CGG - chr5_1:12644799-12644818 Msa0718410:intron 55.0%
GCAGCATCTGAGCACCAATG+AGG - chr5_1:12644868-12644887 Msa0718410:intron 55.0%
!! AGTTTTGACGGTGGGGAGGG+TGG + chr5_1:12641119-12641138 None:intergenic 60.0%
! TGGTTTGAGTTCGGCACGGG+CGG + chr5_1:12641194-12641213 None:intergenic 60.0%
ATGGCCAACGACATCGCTCC+AGG - chr5_1:12641232-12641251 Msa0718410:three_prime_UTR 60.0%
AGGATTCCGTCGGGGAAACC+GGG + chr5_1:12641295-12641314 None:intergenic 60.0%
GAGGATTCCGTCGGGGAAAC+CGG + chr5_1:12641296-12641315 None:intergenic 60.0%
GGTTTCCCCGACGGAATCCT+CGG - chr5_1:12641295-12641314 Msa0718410:three_prime_UTR 60.0%
AATCCTCGGCGGCGAACTCA+TGG - chr5_1:12641309-12641328 Msa0718410:three_prime_UTR 60.0%
! GGCTCCGGTGATGGTCCTAA+TGG - chr5_1:12641502-12641521 Msa0718410:intron 60.0%
CCACCACCGATCACTGCCAA+AGG + chr5_1:12641595-12641614 None:intergenic 60.0%
CCTTTGGCAGTGATCGGTGG+TGG - chr5_1:12641592-12641611 Msa0718410:intron 60.0%
AGTAGTGGCAGAGCGGCATC+TGG + chr5_1:12644251-12644270 None:intergenic 60.0%
! CTGGGCTAGAACCCCAAAGG+TGG + chr5_1:12644353-12644372 None:intergenic 60.0%
ATGAACTCGACAACGCGCGG+AGG - chr5_1:12644802-12644821 Msa0718410:intron 60.0%
TGCAGGGTGCATGGCAGCTT+TGG - chr5_1:12646110-12646129 Msa0718410:CDS 60.0%
TTCGGCACGGGCGGCGTATA+CGG + chr5_1:12641185-12641204 None:intergenic 65.0%
GCCAACGACATCGCTCCAGG+AGG - chr5_1:12641235-12641254 Msa0718410:three_prime_UTR 65.0%
GCCTCCTGGAGCGATGTCGT+TGG + chr5_1:12641239-12641258 None:intergenic 65.0%
! GTGGTGGTGAGTTGGCCTCC+TGG + chr5_1:12641253-12641272 None:intergenic 65.0%
GGATTCCGTCGGGGAAACCG+GGG + chr5_1:12641294-12641313 None:intergenic 65.0%
TTCCCCGACGGAATCCTCGG+CGG - chr5_1:12641298-12641317 Msa0718410:three_prime_UTR 65.0%
TTCGCCGCCGAGGATTCCGT+CGG + chr5_1:12641305-12641324 None:intergenic 65.0%
GTTCCATGAGTTCGCCGCCG+AGG + chr5_1:12641315-12641334 None:intergenic 65.0%
!! CGGTTACCGTTCACCGGCTC+CGG - chr5_1:12641487-12641506 Msa0718410:intron 65.0%
CCATCACCGGAGCCGGTGAA+CGG + chr5_1:12641496-12641515 None:intergenic 65.0%
GAGCGGCATCTGGCTGCTAC+AGG + chr5_1:12644241-12644260 None:intergenic 65.0%
GTATACGGCGGCGGTGTGGG+CGG + chr5_1:12641170-12641189 None:intergenic 70.0%
GGCGTATACGGCGGCGGTGT+GGG + chr5_1:12641173-12641192 None:intergenic 70.0%
TCGCCGCCGAGGATTCCGTC+GGG + chr5_1:12641304-12641323 None:intergenic 70.0%
!! CCGTTCACCGGCTCCGGTGA+TGG - chr5_1:12641493-12641512 Msa0718410:intron 70.0%
CGGCGTATACGGCGGCGGTG+TGG + chr5_1:12641174-12641193 None:intergenic 75.0%
ACGGGCGGCGTATACGGCGG+CGG + chr5_1:12641179-12641198 None:intergenic 75.0%
GGCACGGGCGGCGTATACGG+CGG + chr5_1:12641182-12641201 None:intergenic 75.0%
CGCCGCCGAGGATTCCGTCG+GGG + chr5_1:12641303-12641322 None:intergenic 75.0%
! TACGGCGGCGGTGTGGGCGG+CGG + chr5_1:12641167-12641186 None:intergenic 80.0%
! ACGGCGGCGGTGTGGGCGGC+GGG + chr5_1:12641166-12641185 None:intergenic 85.0%
! CGGCGGCGGTGTGGGCGGCG+GGG + chr5_1:12641165-12641184 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 12641103 12646487 12641103 ID=Msa0718410;Name=Msa0718410
chr5_1 mRNA 12641103 12646487 12641103 ID=Msa0718410-mRNA-1;Parent=Msa0718410;Name=Msa0718410-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0.33|0.66|0.5|1|3|302|361
chr5_1 exon 12641103 12641475 12641103 ID=Msa0718410-mRNA-1:exon:5166;Parent=Msa0718410-mRNA-1
chr5_1 exon 12643310 12643416 12643310 ID=Msa0718410-mRNA-1:exon:5165;Parent=Msa0718410-mRNA-1
chr5_1 exon 12645580 12646487 12645580 ID=Msa0718410-mRNA-1:exon:5164;Parent=Msa0718410-mRNA-1
chr5_1 CDS 12645580 12646487 12645580 ID=Msa0718410-mRNA-1:cds;Parent=Msa0718410-mRNA-1
chr5_1 CDS 12643310 12643416 12643310 ID=Msa0718410-mRNA-1:cds;Parent=Msa0718410-mRNA-1
chr5_1 CDS 12641405 12641475 12641405 ID=Msa0718410-mRNA-1:cds;Parent=Msa0718410-mRNA-1
chr5_1 three_prime_UTR 12641103 12641404 12641103 ID=Msa0718410-mRNA-1:three_prime_utr;Parent=Msa0718410-mRNA-1
Gene Sequence

>Msa0718410

ATGACTGACAACACCACCCTCCCCACCGTCAAAACTAAGCTCTGCATCATCGGCAGTGGCCCCGCCGCCCACACCGCCGCCGTATACGCCGCCCGTGCCGAACTCAAACCAATCCTCTTCGAAGGATGGATGGCCAACGACATCGCTCCAGGAGGCCAACTCACCACCACAACTGACGTCGAGAATTTCCCCGGTTTCCCCGACGGAATCCTCGGCGGCGAACTCATGGAACGTTGCCGTCAACAGTCCGCTAAATTTGGAACCGAGATCTTCACCGAAACGGTTTCTAAGGTTGATTTCTCTTCTCGTCCTTTTAGGGTTTTCACTGATTCACGTACTGTTGAAGCTGATTCGGTTATCGTCGCTACCGGAGCTGTTGCGAAACGGTTACCGTTCACCGGCTCCGGTGATGGTCCTAATGGTTACTGGAACCGTGGGATTTCAGCTTGTGCTGTATGTGACGGTGCTGCTCCGATCTTTCGTAACAAACCTTTGGCAGTGATCGGTGGTGGAGATTCAGCTATGGAGGAAGCAACGTTTTTGACAAAATACGGTTCTGAAGTTTACATCATTCACCGAAGGGATACGTTTCGGGCTTCAAAGATTATGCAGAGTAAAGCTTTGAGTAATGATAAGATTAAGGTGATTTGGAATTCAATGGTGGTTGAGGCTTTTGGAGATGGGGAGAATAAGAAGCTTGGGGGTTTGAAGGTGGAGAATGTGGCGACAAAAGAGGTTTCTGATTTGAAGGTTTCTGGGTTGTTCTTTGCAATTGGGCATGAACCGGCGACAAAGTTTTTGGATGGTCAATTAGAGCTTGATTCTGATGGGTATGTTGTGACGAAGCCGGGGACTACGAAGACTAGTGTTGAGGGTGTTTTTGCTGCTGGGGATGTTCAGGATAAGAAGATAGTGGTAAGCAAGATCACCTTGACTTCTGCGATTGTGTTGAAAAATGCAACGCTTGGAAGTCCTGTAGCAGCCAGATGCCGCTCTGCCACTACTGTTCCAATTGGGTGCATGGCAGCTTTGGATGCAGAACATTTCCTGCAAGGAGTTGGTTTACAACAGGATAAGAGCGATTGA
Protein sequence

>Msa0718410

MTDNTTLPTVKTKLCIIGSGPAAHTAAVYAARAELKPILFEGWMANDIAPGGQLTTTTDVENFPGFPDGILGGELMERCRQQSAKFGTEIFTETVSKVDFSSRPFRVFTDSRTVEADSVIVATGAVAKRLPFTGSGDGPNGYWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEATFLTKYGSEVYIIHRRDTFRASKIMQSKALSNDKIKVIWNSMVVEAFGDGENKKLGGLKVENVATKEVSDLKVSGLFFAIGHEPATKFLDGQLELDSDGYVVTKPGTTKTSVEGVFAAGDVQDKKIVVSKITLTSAIVLKNATLGSPVAARCRSATTVPIGCMAALDAEHFLQGVGLQQDKSD*