AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0839450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0839450 MtrunA17_Chr5g0407541 90.305 361 10 3 1 361 41 376 0.0 629
Msa0839450 MtrunA17_Chr1g0173181 46.939 343 149 5 14 355 71 381 3.98e-101 308
Msa0839450 MtrunA17_Chr6g0463311 77.358 53 12 0 118 170 2 54 2.81e-20 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0839450 AT2G17420.1 75.000 356 62 2 7 361 54 383 0.0 538
Msa0839450 AT2G17420.2 83.165 297 50 0 7 303 54 350 0.0 516
Msa0839450 AT4G35460.1 74.438 356 64 2 7 361 46 375 0.0 511
Msa0839450 AT2G41680.1 46.450 338 148 5 14 350 86 391 7.81e-102 310

Find 130 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTGATTTGAAGGTTTC+TGG 0.081370 5_4:-14469630 Msa0839450:CDS
TCACCGAAGGGATACGTTTC+GGG 0.179879 5_4:-14469793 Msa0839450:CDS
CGTCAACAGTCCGCTAAATT+TGG 0.205219 5_4:-14470128 Msa0839450:CDS
TCTGGGTTGTTCTTTGCAAT+TGG 0.250878 5_4:-14469612 Msa0839450:CDS
TTTGAGTAATGATAAGATTA+AGG 0.284692 5_4:-14469745 Msa0839450:CDS
CTTCACCGAAACGGTTTCTA+AGG 0.285123 5_4:-14470096 Msa0839450:CDS
ATTAAGCATCTTGTGAGTTC+TGG 0.297594 5_4:+14465267 None:intergenic
TCAATGGTGGTTGAGGCTTT+TGG 0.297880 5_4:-14469711 Msa0839450:CDS
TTCGGCACGGGCGGCGTATA+CGG 0.300560 5_4:+14470286 None:intergenic
TACGGCGGCGGTGTGGGCGG+CGG 0.303675 5_4:+14470304 None:intergenic
ATGATAAGATTAAGGTGATT+TGG 0.304348 5_4:-14469737 Msa0839450:CDS
ACGGCGGCGGTGTGGGCGGC+GGG 0.304944 5_4:+14470305 None:intergenic
TCTGCCACTACTGTTCTAAT+TGG 0.312201 5_4:-14467209 Msa0839450:intron
CTTATCATTTGTTGGGTCAA+TGG 0.312368 5_4:-14465082 Msa0839450:three_prime_UTR
CTGGGTTGTTCTTTGCAATT+GGG 0.312403 5_4:-14469611 Msa0839450:CDS
TGCAGGGTGCATGGCAGCTT+TGG 0.342461 5_4:-14465358 Msa0839450:intron
GAATCAGTGAAAACCCTAAA+AGG 0.351127 5_4:+14470056 None:intergenic
GTTGTAAACCAACTCCTTGC+AGG 0.353930 5_4:+14465322 None:intergenic
GAGGATTCCGTCGGGGAAAC+CGG 0.355019 5_4:+14470175 None:intergenic
TTTCTGATTTGAAGGTTTCT+GGG 0.369720 5_4:-14469629 Msa0839450:CDS
TTCACCGAAGGGATACGTTT+CGG 0.374958 5_4:-14469794 Msa0839450:CDS
GTGATGGTCCTAATGGTTAC+TGG 0.379009 5_4:-14469959 Msa0839450:CDS
GGCGTATACGGCGGCGGTGT+GGG 0.386511 5_4:+14470298 None:intergenic
CTTTGCAATTGGGCATGAAC+CGG 0.389279 5_4:-14469601 Msa0839450:CDS
CGGCGGCGGTGTGGGCGGCG+GGG 0.394828 5_4:+14470306 None:intergenic
GTTATGAACTTATCATTTGT+TGG 0.400293 5_4:-14465090 Msa0839450:three_prime_UTR
ATGGGGAGAATAAGAAGCTT+GGG 0.403667 5_4:-14469686 Msa0839450:CDS
TTATGAACTTATCATTTGTT+GGG 0.406528 5_4:-14465089 Msa0839450:three_prime_UTR
GTGGTGGTGAGTTGGCCTCC+TGG 0.410776 5_4:+14470218 None:intergenic
AAAAGAGGTTTCTGATTTGA+AGG 0.417001 5_4:-14469637 Msa0839450:CDS
CAAATTTAGCGGACTGTTGA+CGG 0.417215 5_4:+14470129 None:intergenic
TAAGGTGATTTGGAATTCAA+TGG 0.429889 5_4:-14469727 Msa0839450:CDS
GATCTTTCGTAACAAACCTT+TGG 0.430114 5_4:-14469892 Msa0839450:CDS
ACGTACTGTTGAAGCTGATT+CGG 0.431276 5_4:-14470033 Msa0839450:CDS
AACAAATATAAGTATGTTTG+TGG 0.432401 5_4:+14465110 None:intergenic
CCGTTCACCGGCTCCGGTGA+TGG 0.440754 5_4:-14469975 Msa0839450:CDS
GAAGAGGATTGGTTTGAGTT+CGG 0.442464 5_4:+14470268 None:intergenic
CGGCGTATACGGCGGCGGTG+TGG 0.452801 5_4:+14470297 None:intergenic
GCAAGGAGTTGGTTTACAAC+AGG 0.454221 5_4:-14465319 Msa0839450:CDS
AGTAGTGGCAGAGCGGCATC+TGG 0.457334 5_4:+14467220 None:intergenic
CCACGGTTCCAGTAACCATT+AGG 0.457528 5_4:+14469951 None:intergenic
CGGTTACCGTTCACCGGCTC+CGG 0.460678 5_4:-14469981 Msa0839450:CDS
GGCTCCGGTGATGGTCCTAA+TGG 0.460947 5_4:-14469966 Msa0839450:CDS
AGGATTCCGTCGGGGAAACC+GGG 0.463354 5_4:+14470176 None:intergenic
GAAATTCTCGACGTCGGTTG+TGG 0.469174 5_4:+14470199 None:intergenic
GAGGGTGGTGTTGTCAGTCA+TGG 0.470209 5_4:+14470367 None:intergenic
GAACAAATAAAGATTCTAGC+AGG 0.472368 5_4:+14465192 None:intergenic
GAGCGGCATCTGGCTGCTAC+AGG 0.474627 5_4:+14467230 None:intergenic
ATCCATCCTTCGAAGAGGAT+TGG 0.474710 5_4:+14470257 None:intergenic
CAGTTAGAGCTTGATTCTGA+TGG 0.478897 5_4:-14469558 Msa0839450:CDS
CCTAATGGTTACTGGAACCG+TGG 0.480720 5_4:-14469951 Msa0839450:CDS
ATCAACCTTAGAAACCGTTT+CGG 0.485663 5_4:+14470091 None:intergenic
GGGTATGTTGTGACGAAGCC+GGG 0.487150 5_4:-14469537 Msa0839450:CDS
AATCCTCGGCGGCGAACTCA+TGG 0.487221 5_4:-14470159 Msa0839450:CDS
ATGGCCAACGACATCGCTCC+AGG 0.490028 5_4:-14470236 Msa0839450:CDS
AACCAATCCTCTTCGAAGGA+TGG 0.495853 5_4:-14470259 Msa0839450:CDS
AGAGCGATTGACTAGCTAAA+GGG 0.497144 5_4:-14465293 Msa0839450:exon
AACCGTTTCGGTGAAGATCT+CGG 0.497670 5_4:+14470103 None:intergenic
ACAAATATAAGTATGTTTGT+GGG 0.498455 5_4:+14465111 None:intergenic
GGTTTCCCCGACGGAATCCT+CGG 0.502701 5_4:-14470173 Msa0839450:CDS
TTGGAATTCAATGGTGGTTG+AGG 0.502804 5_4:-14469718 Msa0839450:CDS
GATGGGGAGAATAAGAAGCT+TGG 0.505336 5_4:-14469687 Msa0839450:CDS
ACCGACGTCGAGAATTTCCC+CGG 0.505352 5_4:-14470194 Msa0839450:CDS
GGGTTTGAAGGTGGAGAATG+TGG 0.506859 5_4:-14469664 Msa0839450:CDS
ACGGGCGGCGTATACGGCGG+CGG 0.506979 5_4:+14470292 None:intergenic
GAACATTTCCTGCAAGGAGT+TGG 0.506995 5_4:-14465330 Msa0839450:CDS
GCTGCAATTGTCCAGGATAG+TGG 0.509573 5_4:-14467309 Msa0839450:intron
ATTCTCGACGTCGGTTGTGG+TGG 0.510476 5_4:+14470202 None:intergenic
AAAACTAAGCTCTGCATCAT+CGG 0.514903 5_4:-14470335 Msa0839450:CDS
CCTTTGGCAGTGATCGGTGG+TGG 0.516096 5_4:-14469876 Msa0839450:CDS
AACCGAGATCTTCACCGAAA+CGG 0.516755 5_4:-14470105 Msa0839450:CDS
GCGAAACGGTTACCGTTCAC+CGG 0.516776 5_4:-14469987 Msa0839450:CDS
GATTGGTTTGAGTTCGGCAC+GGG 0.519127 5_4:+14470274 None:intergenic
TCGCCGCCGAGGATTCCGTC+GGG 0.521460 5_4:+14470167 None:intergenic
TGGTTTGAGTTCGGCACGGG+CGG 0.533615 5_4:+14470277 None:intergenic
CTACCGGAGCTGTTGCGAAA+CGG 0.536790 5_4:-14470001 Msa0839450:CDS
GCCTCCTGGAGCGATGTCGT+TGG 0.537048 5_4:+14470232 None:intergenic
TAACCGTTTCGCAACAGCTC+CGG 0.541587 5_4:+14469998 None:intergenic
AACAAACCTTTGGCAGTGAT+CGG 0.545138 5_4:-14469882 Msa0839450:CDS
TATTATTCAAAATTTGATTG+TGG 0.545656 5_4:-14465167 Msa0839450:three_prime_UTR
GTATACGGCGGCGGTGTGGG+CGG 0.546275 5_4:+14470301 None:intergenic
AGTTAGAGCTTGATTCTGAT+GGG 0.548212 5_4:-14469557 Msa0839450:CDS
TGGGTATGTTGTGACGAAGC+CGG 0.551891 5_4:-14469538 Msa0839450:CDS
AAAGGTTTGTTACGAAAGAT+CGG 0.552657 5_4:+14469894 None:intergenic
CGTCGGTTGTGGTGGTGAGT+TGG 0.552760 5_4:+14470210 None:intergenic
CAACACAATCGCAGAAGTCA+AGG 0.555780 5_4:+14467274 None:intergenic
AAGCCCGAAACGTATCCCTT+CGG 0.556116 5_4:+14469790 None:intergenic
ACACTAGTCTTCGTAGTCCC+CGG 0.559275 5_4:+14469519 None:intergenic
AATTTCCCCGGTTTCCCCGA+CGG 0.559331 5_4:-14470182 Msa0839450:CDS
AAGAGCGATTGACTAGCTAA+AGG 0.559368 5_4:-14465294 Msa0839450:exon
ATTAGGACCATCACCGGAGC+CGG 0.560496 5_4:+14469968 None:intergenic
AAGCTCTGCATCATCGGCAG+TGG 0.560600 5_4:-14470329 Msa0839450:CDS
ACTACGAAGACTAGTGTTGA+GGG 0.561326 5_4:-14469513 Msa0839450:CDS
GATTCGGTTATCGTCGCTAC+CGG 0.565517 5_4:-14470017 Msa0839450:CDS
TCTCGAGTCAGATATGATCA+AGG 0.573043 5_4:+14465020 None:intergenic
AATCCTCTTCGAAGGATGGA+TGG 0.574752 5_4:-14470255 Msa0839450:CDS
CTCAAACCAATCCTCTTCGA+AGG 0.575038 5_4:-14470263 Msa0839450:CDS
GATCTCGGTTCCAAATTTAG+CGG 0.579270 5_4:+14470118 None:intergenic
TATTTGCATCATTACAACAA+CGG 0.579863 5_4:+14465052 None:intergenic
GATGCAGAACATTTCCTGCA+AGG 0.584210 5_4:-14465336 Msa0839450:CDS
TTCGCCGCCGAGGATTCCGT+CGG 0.585796 5_4:+14470166 None:intergenic
GGAGAATGTGGTGACAAAAG+AGG 0.585967 5_4:-14469652 Msa0839450:CDS
CGGTGGTGGAGATTCAGCTA+TGG 0.589556 5_4:-14469862 Msa0839450:CDS
GACTACGAAGACTAGTGTTG+AGG 0.594010 5_4:-14469514 Msa0839450:CDS
AAGTTTACATCATTCACCGA+AGG 0.594491 5_4:-14469806 Msa0839450:CDS
CCATCACCGGAGCCGGTGAA+CGG 0.597742 5_4:+14469975 None:intergenic
GGCACGGGCGGCGTATACGG+CGG 0.600378 5_4:+14470289 None:intergenic
TAAACCAATTAGAACAGTAG+TGG 0.601223 5_4:+14467205 None:intergenic
CCACCACCGATCACTGCCAA+AGG 0.613847 5_4:+14469876 None:intergenic
TGGTGGAGATTCAGCTATGG+AGG 0.616555 5_4:-14469859 Msa0839450:CDS
TGGGGAGAATAAGAAGCTTG+GGG 0.617354 5_4:-14469685 Msa0839450:CDS
CTAATGGTTACTGGAACCGT+GGG 0.623174 5_4:-14469950 Msa0839450:CDS
AACAAATAAAGATTCTAGCA+GGG 0.625675 5_4:+14465193 None:intergenic
AGTTTACATCATTCACCGAA+GGG 0.627428 5_4:-14469805 Msa0839450:CDS
TCAGCTTGTGCTGTATGTGA+CGG 0.630662 5_4:-14469924 Msa0839450:CDS
GGATTCCGTCGGGGAAACCG+GGG 0.631914 5_4:+14470177 None:intergenic
GGTGATTTGGAATTCAATGG+TGG 0.638272 5_4:-14469724 Msa0839450:CDS
GTTCCATGAGTTCGCCGCCG+AGG 0.639562 5_4:+14470156 None:intergenic
TGGCCATCCATCCTTCGAAG+AGG 0.649138 5_4:+14470252 None:intergenic
AAACCTTTGGCAGTGATCGG+TGG 0.660900 5_4:-14469879 Msa0839450:CDS
GGATTGGTTTGAGTTCGGCA+CGG 0.665823 5_4:+14470273 None:intergenic
CGCCGCCGAGGATTCCGTCG+GGG 0.669377 5_4:+14470168 None:intergenic
GTAACCATTAGGACCATCAC+CGG 0.674090 5_4:+14469962 None:intergenic
GGTATGTTGTGACGAAGCCG+GGG 0.674837 5_4:-14469536 Msa0839450:CDS
CAGCACAAGCTGAAATCCCA+CGG 0.675347 5_4:+14469934 None:intergenic
GGGGAGAATAAGAAGCTTGG+GGG 0.680934 5_4:-14469684 Msa0839450:CDS
ACCGGGGAAATTCTCGACGT+CGG 0.686945 5_4:+14470193 None:intergenic
TTCCCCGACGGAATCCTCGG+CGG 0.691557 5_4:-14470170 Msa0839450:CDS
GCCAACGACATCGCTCCAGG+AGG 0.696880 5_4:-14470233 Msa0839450:CDS
TTAGAACAGTAGTGGCAGAG+CGG 0.739335 5_4:+14467213 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATCAACAAAAAAAT+GGG - chr5_4:14468004-14468023 Msa0839450:intron 10.0%
!!! AATTTTTTAAATGTCTTAAT+TGG - chr5_4:14469539-14469558 Msa0839450:CDS 10.0%
!! TTAAATAATAACCAACAATA+AGG + chr5_4:14466267-14466286 None:intergenic 15.0%
!!! TTTTTCATATAATTTAGCAT+AGG - chr5_4:14466866-14466885 Msa0839450:intron 15.0%
!! ATATTAGAATAGTAAACAAA+AGG - chr5_4:14467321-14467340 Msa0839450:intron 15.0%
!! AAAAACTTATAACAGTATAT+AGG - chr5_4:14467732-14467751 Msa0839450:intron 15.0%
!! GTATAAAATCAACAAAAAAA+TGG - chr5_4:14468003-14468022 Msa0839450:intron 15.0%
!! TCTTAGTTTCATTTATTTAA+TGG - chr5_4:14469005-14469024 Msa0839450:intron 15.0%
!! CTTAGTTTCATTTATTTAAT+GGG - chr5_4:14469006-14469025 Msa0839450:intron 15.0%
!!! TTTTCTTATATTTTAGGTAA+TGG + chr5_4:14469257-14469276 None:intergenic 15.0%
!! TTAAATTTAAATTGATTGGT+AGG + chr5_4:14469280-14469299 None:intergenic 15.0%
!!! AACTTCAATTTAAATTTGTT+TGG - chr5_4:14469377-14469396 Msa0839450:intron 15.0%
!!! ACTTCAATTTAAATTTGTTT+GGG - chr5_4:14469378-14469397 Msa0839450:intron 15.0%
!!! TAAAAAATTTTCATAGTTCA+CGG + chr5_4:14469528-14469547 None:intergenic 15.0%
!! ATATATATCCATTAGTTAAA+AGG - chr5_4:14469774-14469793 Msa0839450:CDS 15.0%
!! TATTATTCAAAATTTGATTG+TGG - chr5_4:14470201-14470220 Msa0839450:CDS 15.0%
!! TTTGAGTAATGATAAGATTA+AGG - chr5_4:14465623-14465642 Msa0839450:intron 20.0%
!!! TAGTTCATTATTCATTTTAG+AGG - chr5_4:14466127-14466146 Msa0839450:intron 20.0%
!! TGGTTATTATTTAAGAGAAT+TGG - chr5_4:14466273-14466292 Msa0839450:intron 20.0%
!! ATTACTTATGAGTTTATCTA+AGG - chr5_4:14466439-14466458 Msa0839450:intron 20.0%
!! ATGAATGATATTCAACTAAA+GGG + chr5_4:14466688-14466707 None:intergenic 20.0%
!! TTGAATGATATTCAACTAAA+GGG + chr5_4:14466720-14466739 None:intergenic 20.0%
!! TTTGAATGATATTCAACTAA+AGG + chr5_4:14466721-14466740 None:intergenic 20.0%
!! TGATTGTATTATATCTTGAT+AGG - chr5_4:14467174-14467193 Msa0839450:intron 20.0%
!! TTATGTATGCAACTAATAAA+TGG + chr5_4:14468954-14468973 None:intergenic 20.0%
!!! TTTTATTGTTAGGTTAATGT+TGG - chr5_4:14469075-14469094 Msa0839450:intron 20.0%
!!! TATATTTTAGGTAATGGTAA+TGG + chr5_4:14469251-14469270 None:intergenic 20.0%
!! GGCATTAAATTTAAATTGAT+TGG + chr5_4:14469284-14469303 None:intergenic 20.0%
!! AACTTTATAAATGATCCTAA+TGG + chr5_4:14469647-14469666 None:intergenic 20.0%
!! ATTAGGATCATTTATAAAGT+TGG - chr5_4:14469646-14469665 Msa0839450:CDS 20.0%
!!! ACACTAATATTTTTACAACA+TGG + chr5_4:14469866-14469885 None:intergenic 20.0%
!! CAAATTATCTTTAAATGACA+CGG - chr5_4:14469972-14469991 Msa0839450:CDS 20.0%
!! ACAAATATAAGTATGTTTGT+GGG + chr5_4:14470260-14470279 None:intergenic 20.0%
!! AACAAATATAAGTATGTTTG+TGG + chr5_4:14470261-14470280 None:intergenic 20.0%
!! TTATGAACTTATCATTTGTT+GGG - chr5_4:14470279-14470298 Msa0839450:CDS 20.0%
! ATGATAAGATTAAGGTGATT+TGG - chr5_4:14465631-14465650 Msa0839450:intron 25.0%
!!! ATATAGCTATTTTATAACCC+AGG + chr5_4:14466181-14466200 None:intergenic 25.0%
! ATGTTATCTTAAATGTGGTA+GGG - chr5_4:14466338-14466357 Msa0839450:intron 25.0%
! ACAAAAACAGAATATGAACA+TGG + chr5_4:14466528-14466547 None:intergenic 25.0%
!!! ATTCTGTTTTTGTTTGAAGA+TGG - chr5_4:14466535-14466554 Msa0839450:intron 25.0%
! AACTAAAGGGATTTGAATAA+AGG + chr5_4:14466675-14466694 None:intergenic 25.0%
! GATGAATGATATTCAACTAA+AGG + chr5_4:14466689-14466708 None:intergenic 25.0%
!! TTACTTAAGTACCGTTATTA+TGG - chr5_4:14467110-14467129 Msa0839450:intron 25.0%
! ATGTGAATCTACCATAATAA+CGG + chr5_4:14467124-14467143 None:intergenic 25.0%
!! TTTTTGGACACATGATTATT+AGG - chr5_4:14467146-14467165 Msa0839450:intron 25.0%
!! TTATCTGATCTTCTAAGTTT+TGG + chr5_4:14467202-14467221 None:intergenic 25.0%
!!! AATGTGGTTGATAACTAATA+AGG - chr5_4:14467220-14467239 Msa0839450:CDS 25.0%
! AATAGTAAACAAAAGGAAGA+AGG - chr5_4:14467328-14467347 Msa0839450:intron 25.0%
! AGGATTTAAGGAAAGAAAAA+TGG + chr5_4:14467386-14467405 None:intergenic 25.0%
! TAACAGTATATAGGTTAGTA+TGG - chr5_4:14467741-14467760 Msa0839450:intron 25.0%
! CGAAAGTAAACAATACTATA+TGG - chr5_4:14468602-14468621 Msa0839450:intron 25.0%
!!! TTGTAGCTTGTTTTATTGTT+AGG - chr5_4:14469065-14469084 Msa0839450:intron 25.0%
! AATTCTATATCATATCATGC+AGG + chr5_4:14469155-14469174 None:intergenic 25.0%
!! GGTAGGTTTTCTTATATTTT+AGG + chr5_4:14469263-14469282 None:intergenic 25.0%
! AAAATGAAAACCAAATTCTG+AGG + chr5_4:14469468-14469487 None:intergenic 25.0%
!! TTTTCATCATGAGAAACAAA+AGG + chr5_4:14469618-14469637 None:intergenic 25.0%
! TGATGAAAATTTCTTCCATT+AGG - chr5_4:14469629-14469648 Msa0839450:CDS 25.0%
! ATCATTTATAAAGTTGGCAA+TGG - chr5_4:14469652-14469671 Msa0839450:CDS 25.0%
! AATACAGTTAAACAAGGATT+TGG + chr5_4:14469697-14469716 None:intergenic 25.0%
!! ATCCTTGTTTAACTGTATTT+AGG - chr5_4:14469698-14469717 Msa0839450:CDS 25.0%
! TTCCTAAATACAGTTAAACA+AGG + chr5_4:14469703-14469722 None:intergenic 25.0%
!!! CAATTTGTCCTTTTAACTAA+TGG + chr5_4:14469785-14469804 None:intergenic 25.0%
! TAAAAGGACAAATTGATCAT+TGG - chr5_4:14469790-14469809 Msa0839450:CDS 25.0%
! AAAAGGACAAATTGATCATT+GGG - chr5_4:14469791-14469810 Msa0839450:CDS 25.0%
! AACAAATAAAGATTCTAGCA+GGG + chr5_4:14470178-14470197 None:intergenic 25.0%
! GTTATGAACTTATCATTTGT+TGG - chr5_4:14470278-14470297 Msa0839450:CDS 25.0%
! TATTTGCATCATTACAACAA+CGG + chr5_4:14470319-14470338 None:intergenic 25.0%
!! AAAGGTTTGTTACGAAAGAT+CGG + chr5_4:14465477-14465496 None:intergenic 30.0%
! GCAACGTTTTTGACAAAATA+CGG - chr5_4:14465534-14465553 Msa0839450:intron 30.0%
! TAAGGTGATTTGGAATTCAA+TGG - chr5_4:14465641-14465660 Msa0839450:intron 30.0%
! AAAAGAGGTTTCTGATTTGA+AGG - chr5_4:14465731-14465750 Msa0839450:intron 30.0%
! TTTCTGATTTGAAGGTTTCT+GGG - chr5_4:14465739-14465758 Msa0839450:intron 30.0%
! ATAATTACATGTGTTGACAC+CGG - chr5_4:14466076-14466095 Msa0839450:intron 30.0%
TGCTTAGTTGTTATATCTGA+TGG - chr5_4:14466238-14466257 Msa0839450:intron 30.0%
TGGAGATGTTATCTTAAATG+TGG - chr5_4:14466333-14466352 Msa0839450:intron 30.0%
GATGTTATCTTAAATGTGGT+AGG - chr5_4:14466337-14466356 Msa0839450:intron 30.0%
ACTTATGAGTTTATCTAAGG+TGG - chr5_4:14466442-14466461 Msa0839450:intron 30.0%
TGTTTATTGGTGTATATGAC+TGG - chr5_4:14466467-14466486 Msa0839450:intron 30.0%
! TGACTGGTATTGAAATGTAA+TGG - chr5_4:14466483-14466502 Msa0839450:intron 30.0%
TTTGTTTGAAGATGGTTTGA+TGG - chr5_4:14466543-14466562 Msa0839450:intron 30.0%
ACTTCTTGTATATTTAGCTG+CGG - chr5_4:14467012-14467031 Msa0839450:intron 30.0%
!!! TGGTAGATTCACATCTTTTT+TGG - chr5_4:14467130-14467149 Msa0839450:intron 30.0%
ACTTAGAAGATCAGATAATG+TGG - chr5_4:14467204-14467223 Msa0839450:intron 30.0%
! GGAACACAAAACTTTGTTTA+TGG - chr5_4:14467241-14467260 Msa0839450:CDS 30.0%
! AAACTTTGTTTATGGAGCAA+AGG - chr5_4:14467249-14467268 Msa0839450:CDS 30.0%
ATGAATCATGAGAAGAAAGT+GGG + chr5_4:14467433-14467452 None:intergenic 30.0%
GATTTGACTGAAAAGAACTT+TGG + chr5_4:14467508-14467527 None:intergenic 30.0%
AACTTTGCTAATTTCACCTT+GGG + chr5_4:14467607-14467626 None:intergenic 30.0%
CAAAGTTGCTTGTGATATTA+AGG - chr5_4:14467620-14467639 Msa0839450:intron 30.0%
TTCATAGTGTAAAAGAAAGC+AGG - chr5_4:14467804-14467823 Msa0839450:intron 30.0%
AAAGGAGTAATATCCAAATC+AGG - chr5_4:14467856-14467875 Msa0839450:intron 30.0%
AAATCATTTATGGCCTGATT+TGG + chr5_4:14467872-14467891 None:intergenic 30.0%
! AATCAGGCCATAAATGATTT+TGG - chr5_4:14467872-14467891 Msa0839450:intron 30.0%
!! ATAAACCCAACACTACTTTT+AGG - chr5_4:14467968-14467987 Msa0839450:intron 30.0%
! AAAAATGGGTTTGATAACTC+AGG - chr5_4:14468018-14468037 Msa0839450:intron 30.0%
TAAACCAATTAGAACAGTAG+TGG + chr5_4:14468166-14468185 None:intergenic 30.0%
CTCTCAAAATACATTAACTG+AGG - chr5_4:14468193-14468212 Msa0839450:intron 30.0%
TCAAAATACATTAACTGAGG+TGG - chr5_4:14468196-14468215 Msa0839450:intron 30.0%
ATTGGCAAGTCTACAAATAA+TGG - chr5_4:14468414-14468433 Msa0839450:intron 30.0%
! AAACCATTGATTGACATTCT+AGG + chr5_4:14468459-14468478 None:intergenic 30.0%
! TTTGAGACTTTGTTTAAGCA+GGG + chr5_4:14468645-14468664 None:intergenic 30.0%
!! TATATTGAAGAGTGATGGAT+AGG + chr5_4:14468804-14468823 None:intergenic 30.0%
TGCAATATATTGAAGAGTGA+TGG + chr5_4:14468809-14468828 None:intergenic 30.0%
GTTCAAAACAAGGAAAAGTT+AGG + chr5_4:14468832-14468851 None:intergenic 30.0%
AGAAACACAAGTTCAAAACA+AGG + chr5_4:14468842-14468861 None:intergenic 30.0%
TAAGTTGTAAACCTATCATG+TGG - chr5_4:14468869-14468888 Msa0839450:intron 30.0%
AAATTCACATACCACATGAT+AGG + chr5_4:14468883-14468902 None:intergenic 30.0%
! TTGAGTTTAAAGTTAGTGTC+TGG - chr5_4:14468908-14468927 Msa0839450:intron 30.0%
ACTAATAAATGGAACAGAGA+TGG + chr5_4:14468943-14468962 None:intergenic 30.0%
AAAACAAGCTACAATGACAT+CGG + chr5_4:14469059-14469078 None:intergenic 30.0%
GAGTTTACAACATGTTAACT+CGG - chr5_4:14469202-14469221 Msa0839450:intron 30.0%
TATGCATTTGACATTTGACA+AGG + chr5_4:14469305-14469324 None:intergenic 30.0%
TTCGATCAATTCATTTAGCT+GGG - chr5_4:14469326-14469345 Msa0839450:intron 30.0%
ATGTCTTAATTGGATTTGTC+TGG - chr5_4:14469549-14469568 Msa0839450:CDS 30.0%
! ATTTGAAGCATAACCTAAGT+TGG + chr5_4:14469957-14469976 None:intergenic 30.0%
GAACAAATAAAGATTCTAGC+AGG + chr5_4:14470179-14470198 None:intergenic 30.0%
AAAACTAAGCTCTGCATCAT+CGG - chr5_4:14465033-14465052 Msa0839450:three_prime_UTR 35.0%
ATCAACCTTAGAAACCGTTT+CGG + chr5_4:14465280-14465299 None:intergenic 35.0%
! ATTTCTCTTCTCGTCCTTTT+AGG - chr5_4:14465298-14465317 Msa0839450:exon 35.0%
! TTTCTCTTCTCGTCCTTTTA+GGG - chr5_4:14465299-14465318 Msa0839450:exon 35.0%
GAATCAGTGAAAACCCTAAA+AGG + chr5_4:14465315-14465334 None:intergenic 35.0%
GATCTTTCGTAACAAACCTT+TGG - chr5_4:14465476-14465495 Msa0839450:intron 35.0%
AAGTTTACATCATTCACCGA+AGG - chr5_4:14465562-14465581 Msa0839450:intron 35.0%
AGTTTACATCATTCACCGAA+GGG - chr5_4:14465563-14465582 Msa0839450:intron 35.0%
! GTTTCTGATTTGAAGGTTTC+TGG - chr5_4:14465738-14465757 Msa0839450:intron 35.0%
AGTTAGAGCTTGATTCTGAT+GGG - chr5_4:14465811-14465830 Msa0839450:intron 35.0%
TATTGATGTTGACATGTCAG+TGG + chr5_4:14466028-14466047 None:intergenic 35.0%
TCTGATGGAATCCTTATTGT+TGG - chr5_4:14466253-14466272 Msa0839450:intron 35.0%
AAGCTTGGTTTAACACTCAA+TGG + chr5_4:14466314-14466333 None:intergenic 35.0%
ATTGAGTGTTAAACCAAGCT+TGG - chr5_4:14466313-14466332 Msa0839450:intron 35.0%
TAAGATAACATCTCCAAGCT+TGG + chr5_4:14466329-14466348 None:intergenic 35.0%
TTGTATAGACTGTGATAAGC+AGG - chr5_4:14466409-14466428 Msa0839450:intron 35.0%
! ATCTAAGGTGGAGTGTTTAT+TGG - chr5_4:14466454-14466473 Msa0839450:intron 35.0%
TTTGAAGATGGTTTGATGGA+AGG - chr5_4:14466547-14466566 Msa0839450:intron 35.0%
! TATTAGTTTACCAAACCCCA+GGG + chr5_4:14466617-14466636 None:intergenic 35.0%
! TTATTAGTTTACCAAACCCC+AGG + chr5_4:14466618-14466637 None:intergenic 35.0%
ACCAGGAACAGTAAAAAGTT+GGG + chr5_4:14466925-14466944 None:intergenic 35.0%
AACCAGGAACAGTAAAAAGT+TGG + chr5_4:14466926-14466945 None:intergenic 35.0%
! AACTTTTTACTGTTCCTGGT+TGG - chr5_4:14466925-14466944 Msa0839450:intron 35.0%
! ACTTTTTACTGTTCCTGGTT+GGG - chr5_4:14466926-14466945 Msa0839450:intron 35.0%
TGAAGGCTTGATTATGTGAT+TGG + chr5_4:14467054-14467073 None:intergenic 35.0%
ATAATCAAGCCTTCAAACCA+TGG - chr5_4:14467059-14467078 Msa0839450:intron 35.0%
CTACAAGCATAGAATGAACT+CGG - chr5_4:14467283-14467302 Msa0839450:CDS 35.0%
GATCTGTCACATAGGATTTA+AGG + chr5_4:14467398-14467417 None:intergenic 35.0%
CATGAATCATGAGAAGAAAG+TGG + chr5_4:14467434-14467453 None:intergenic 35.0%
TTACTAGATGTGAATGAGGA+GGG + chr5_4:14467463-14467482 None:intergenic 35.0%
! TTATTGGAGACATGCTGATT+GGG + chr5_4:14467571-14467590 None:intergenic 35.0%
ACTTTGCTAATTTCACCTTG+GGG + chr5_4:14467606-14467625 None:intergenic 35.0%
CAACTTTGCTAATTTCACCT+TGG + chr5_4:14467608-14467627 None:intergenic 35.0%
CTTGTGATATTAAGGATCAG+TGG - chr5_4:14467628-14467647 Msa0839450:intron 35.0%
ATTGACATTCTAGGCATAAC+TGG + chr5_4:14468450-14468469 None:intergenic 35.0%
ATGCCTAGAATGTCAATCAA+TGG - chr5_4:14468453-14468472 Msa0839450:intron 35.0%
CTACAACTGTTTGTATGCTA+TGG + chr5_4:14468535-14468554 None:intergenic 35.0%
TTGCATGTTAGATGCGTTTA+TGG + chr5_4:14468567-14468586 None:intergenic 35.0%
TTTGTTTAAGCAGGGAGATA+AGG + chr5_4:14468637-14468656 None:intergenic 35.0%
! GTTTGAGACTTTGTTTAAGC+AGG + chr5_4:14468646-14468665 None:intergenic 35.0%
CATAGCAAACATGAAACGAT+GGG + chr5_4:14468685-14468704 None:intergenic 35.0%
TCATAGCAAACATGAAACGA+TGG + chr5_4:14468686-14468705 None:intergenic 35.0%
AGGTTTCATCACATCAAAGA+AGG + chr5_4:14468737-14468756 None:intergenic 35.0%
AACATGTTAACTCGGCATTA+TGG - chr5_4:14469210-14469229 Msa0839450:intron 35.0%
GTTCGATCAATTCATTTAGC+TGG - chr5_4:14469325-14469344 Msa0839450:intron 35.0%
ACATGTCACAGACGAAATTT+GGG + chr5_4:14469353-14469372 None:intergenic 35.0%
TACATGTCACAGACGAAATT+TGG + chr5_4:14469354-14469373 None:intergenic 35.0%
! AATTGGATTTGTCTGGAACT+TGG - chr5_4:14469556-14469575 Msa0839450:CDS 35.0%
AAAAGGTTATCAGTCGATCA+GGG + chr5_4:14469601-14469620 None:intergenic 35.0%
ATACACACGAAAGAACAATG+TGG + chr5_4:14469822-14469841 None:intergenic 35.0%
TTAGCTTCGAAAGTTATTGC+TGG - chr5_4:14469895-14469914 Msa0839450:CDS 35.0%
ATTAAGCATCTTGTGAGTTC+TGG + chr5_4:14470104-14470123 None:intergenic 35.0%
! CTTATCATTTGTTGGGTCAA+TGG - chr5_4:14470286-14470305 Msa0839450:CDS 35.0%
!!! GATGCAGAGCTTAGTTTTGA+CGG + chr5_4:14465031-14465050 None:intergenic 40.0%
!! GAAGAGGATTGGTTTGAGTT+CGG + chr5_4:14465103-14465122 None:intergenic 40.0%
!! CAAATTTAGCGGACTGTTGA+CGG + chr5_4:14465242-14465261 None:intergenic 40.0%
GATCTCGGTTCCAAATTTAG+CGG + chr5_4:14465253-14465272 None:intergenic 40.0%
ACGTACTGTTGAAGCTGATT+CGG - chr5_4:14465335-14465354 Msa0839450:CDS 40.0%
AACAAACCTTTGGCAGTGAT+CGG - chr5_4:14465486-14465505 Msa0839450:intron 40.0%
! GGTGATTTGGAATTCAATGG+TGG - chr5_4:14465644-14465663 Msa0839450:intron 40.0%
TTGGAATTCAATGGTGGTTG+AGG - chr5_4:14465650-14465669 Msa0839450:intron 40.0%
ATGGGGAGAATAAGAAGCTT+GGG - chr5_4:14465682-14465701 Msa0839450:intron 40.0%
TCTGGGTTGTTCTTTGCAAT+TGG - chr5_4:14465756-14465775 Msa0839450:intron 40.0%
CTGGGTTGTTCTTTGCAATT+GGG - chr5_4:14465757-14465776 Msa0839450:intron 40.0%
CAGTTAGAGCTTGATTCTGA+TGG - chr5_4:14465810-14465829 Msa0839450:intron 40.0%
! ACTACGAAGACTAGTGTTGA+GGG - chr5_4:14465855-14465874 Msa0839450:intron 40.0%
! ATGCCTTCGATTAGAAGTGT+CGG - chr5_4:14466101-14466120 Msa0839450:intron 40.0%
TTGTGTGTGAATGTGATTCC+TGG - chr5_4:14466160-14466179 Msa0839450:intron 40.0%
TGTGTGTGAATGTGATTCCT+GGG - chr5_4:14466161-14466180 Msa0839450:intron 40.0%
ATGAACTCACCTTCATGTCA+TGG - chr5_4:14466380-14466399 Msa0839450:intron 40.0%
CAATACAGACCATGACATGA+AGG + chr5_4:14466392-14466411 None:intergenic 40.0%
TACACCATTATACTTTGCCC+TGG - chr5_4:14466597-14466616 Msa0839450:intron 40.0%
ACACCATTATACTTTGCCCT+GGG - chr5_4:14466598-14466617 Msa0839450:intron 40.0%
! CCTAGCATATTTTCAGCTAC+AGG + chr5_4:14466784-14466803 None:intergenic 40.0%
CCTGTAGCTGAAAATATGCT+AGG - chr5_4:14466781-14466800 Msa0839450:intron 40.0%
TTACATAGAGACGACGAATG+AGG + chr5_4:14466843-14466862 None:intergenic 40.0%
AAGTTGGGGAATCGATGAAT+AGG + chr5_4:14466910-14466929 None:intergenic 40.0%
CCAGGAACAGTAAAAAGTTG+GGG + chr5_4:14466924-14466943 None:intergenic 40.0%
! CTTTTTACTGTTCCTGGTTG+GGG - chr5_4:14466927-14466946 Msa0839450:intron 40.0%
TCAATACCTTGTCTGATGCA+AGG + chr5_4:14466964-14466983 None:intergenic 40.0%
CCTTCAAACCATGGTTAGAT+GGG - chr5_4:14467068-14467087 Msa0839450:intron 40.0%
CTTCAAACCATGGTTAGATG+GGG - chr5_4:14467069-14467088 Msa0839450:intron 40.0%
CGAGTTCATTCTATGCTTGT+AGG + chr5_4:14467285-14467304 None:intergenic 40.0%
AAAAGGAAGAAGGAAACCAG+AGG - chr5_4:14467338-14467357 Msa0839450:intron 40.0%
TGGAAGAAGATCTGTCACAT+AGG + chr5_4:14467406-14467425 None:intergenic 40.0%
TACTAGATGTGAATGAGGAG+GGG + chr5_4:14467462-14467481 None:intergenic 40.0%
GTTACTAGATGTGAATGAGG+AGG + chr5_4:14467464-14467483 None:intergenic 40.0%
GGAGTTACTAGATGTGAATG+AGG + chr5_4:14467467-14467486 None:intergenic 40.0%
TCTACACAAGGAGATTTAGG+GGG + chr5_4:14467536-14467555 None:intergenic 40.0%
GTCTACACAAGGAGATTTAG+GGG + chr5_4:14467537-14467556 None:intergenic 40.0%
GGTCTACACAAGGAGATTTA+GGG + chr5_4:14467538-14467557 None:intergenic 40.0%
AGGTCTACACAAGGAGATTT+AGG + chr5_4:14467539-14467558 None:intergenic 40.0%
CTTATTGGAGACATGCTGAT+TGG + chr5_4:14467572-14467591 None:intergenic 40.0%
CAAACACTTAACACCTCGAT+CGG + chr5_4:14467707-14467726 None:intergenic 40.0%
AACATCGAGCTTGAAGTGAA+AGG - chr5_4:14467838-14467857 Msa0839450:intron 40.0%
! CAGGCCATAAATGATTTTGG+TGG - chr5_4:14467875-14467894 Msa0839450:intron 40.0%
GCAGCCACCAAAATCATTTA+TGG + chr5_4:14467882-14467901 None:intergenic 40.0%
!! AACCCAACACTACTTTTAGG+AGG - chr5_4:14467971-14467990 Msa0839450:intron 40.0%
TGCCTCCTAAAAGTAGTGTT+GGG + chr5_4:14467976-14467995 None:intergenic 40.0%
TTGCCTCCTAAAAGTAGTGT+TGG + chr5_4:14467977-14467996 None:intergenic 40.0%
GTGTTGAAAAATGCAACGCT+TGG - chr5_4:14468111-14468130 Msa0839450:intron 40.0%
TCTGCCACTACTGTTCTAAT+TGG - chr5_4:14468159-14468178 Msa0839450:intron 40.0%
CGTACAAAGCTTACAACTCT+CGG - chr5_4:14468318-14468337 Msa0839450:intron 40.0%
!! GAAGAGTGATGGATAGGAAT+GGG + chr5_4:14468798-14468817 None:intergenic 40.0%
!! TGAAGAGTGATGGATAGGAA+TGG + chr5_4:14468799-14468818 None:intergenic 40.0%
!! GGTAATGGTAATGGTTACAC+AGG + chr5_4:14469242-14469261 None:intergenic 40.0%
CATGTCACAGACGAAATTTG+GGG + chr5_4:14469352-14469371 None:intergenic 40.0%
CTTTGTAGGTCCTCAGAATT+TGG - chr5_4:14469455-14469474 Msa0839450:intron 40.0%
GATGACAGCAAACACGAAAA+GGG + chr5_4:14469492-14469511 None:intergenic 40.0%
TGATGACAGCAAACACGAAA+AGG + chr5_4:14469493-14469512 None:intergenic 40.0%
CAAAAGGTTATCAGTCGATC+AGG + chr5_4:14469602-14469621 None:intergenic 40.0%
TGCAGTTAGTGATCCAACTT+AGG - chr5_4:14469941-14469960 Msa0839450:CDS 40.0%
!!! TGACACGGAGATCTTGTTTT+TGG - chr5_4:14469987-14470006 Msa0839450:CDS 40.0%
!!! GAGATCTTGTTTTTGGTGCA+GGG - chr5_4:14469994-14470013 Msa0839450:CDS 40.0%
! AAGAGCGATTGACTAGCTAA+AGG - chr5_4:14470074-14470093 Msa0839450:CDS 40.0%
! AGAGCGATTGACTAGCTAAA+GGG - chr5_4:14470075-14470094 Msa0839450:CDS 40.0%
TCTCGAGTCAGATATGATCA+AGG + chr5_4:14470351-14470370 None:intergenic 40.0%
!!! AGAGCTTAGTTTTGACGGTG+GGG + chr5_4:14465026-14465045 None:intergenic 45.0%
!!! CAGAGCTTAGTTTTGACGGT+GGG + chr5_4:14465027-14465046 None:intergenic 45.0%
CTCAAACCAATCCTCTTCGA+AGG - chr5_4:14465105-14465124 Msa0839450:three_prime_UTR 45.0%
AACCAATCCTCTTCGAAGGA+TGG - chr5_4:14465109-14465128 Msa0839450:three_prime_UTR 45.0%
ATCCATCCTTCGAAGAGGAT+TGG + chr5_4:14465114-14465133 None:intergenic 45.0%
AATCCTCTTCGAAGGATGGA+TGG - chr5_4:14465113-14465132 Msa0839450:three_prime_UTR 45.0%
CGTCAACAGTCCGCTAAATT+TGG - chr5_4:14465240-14465259 Msa0839450:three_prime_UTR 45.0%
AACCGAGATCTTCACCGAAA+CGG - chr5_4:14465263-14465282 Msa0839450:three_prime_UTR 45.0%
AACCGTTTCGGTGAAGATCT+CGG + chr5_4:14465268-14465287 None:intergenic 45.0%
CTTCACCGAAACGGTTTCTA+AGG - chr5_4:14465272-14465291 Msa0839450:three_prime_UTR 45.0%
GTAACCATTAGGACCATCAC+CGG + chr5_4:14465409-14465428 None:intergenic 45.0%
GTGATGGTCCTAATGGTTAC+TGG - chr5_4:14465409-14465428 Msa0839450:intron 45.0%
CTAATGGTTACTGGAACCGT+GGG - chr5_4:14465418-14465437 Msa0839450:intron 45.0%
TCAGCTTGTGCTGTATGTGA+CGG - chr5_4:14465444-14465463 Msa0839450:intron 45.0%
TTCACCGAAGGGATACGTTT+CGG - chr5_4:14465574-14465593 Msa0839450:intron 45.0%
! TCAATGGTGGTTGAGGCTTT+TGG - chr5_4:14465657-14465676 Msa0839450:intron 45.0%
!! TGGTTGAGGCTTTTGGAGAT+GGG - chr5_4:14465664-14465683 Msa0839450:intron 45.0%
GATGGGGAGAATAAGAAGCT+TGG - chr5_4:14465681-14465700 Msa0839450:intron 45.0%
TGGGGAGAATAAGAAGCTTG+GGG - chr5_4:14465683-14465702 Msa0839450:intron 45.0%
TAAGAAGCTTGGGGGTTTGA+AGG - chr5_4:14465692-14465711 Msa0839450:intron 45.0%
GGAGAATGTGGTGACAAAAG+AGG - chr5_4:14465716-14465735 Msa0839450:intron 45.0%
CTTTGCAATTGGGCATGAAC+CGG - chr5_4:14465767-14465786 Msa0839450:intron 45.0%
! TGAACCGGCGACAAAGTTTT+TGG - chr5_4:14465782-14465801 Msa0839450:intron 45.0%
CCATCCAAAAACTTTGTCGC+CGG + chr5_4:14465789-14465808 None:intergenic 45.0%
GACTACGAAGACTAGTGTTG+AGG - chr5_4:14465854-14465873 Msa0839450:intron 45.0%
!!! TTGAGGGTGTTTTTGCTGCT+GGG - chr5_4:14465871-14465890 Msa0839450:intron 45.0%
AGACAAGCTATTACTGCTGC+TGG - chr5_4:14465915-14465934 Msa0839450:intron 45.0%
TGATGTTGACATGTCAGTGG+CGG + chr5_4:14466025-14466044 None:intergenic 45.0%
! CTTCTAATCGAAGGCATGAC+CGG + chr5_4:14466098-14466117 None:intergenic 45.0%
!! TGCCTTCGATTAGAAGTGTC+GGG - chr5_4:14466102-14466121 Msa0839450:intron 45.0%
CACCATTATACTTTGCCCTG+GGG - chr5_4:14466599-14466618 Msa0839450:intron 45.0%
AACCCCAGGGCAAAGTATAA+TGG + chr5_4:14466604-14466623 None:intergenic 45.0%
TTATACTTTGCCCTGGGGTT+TGG - chr5_4:14466604-14466623 Msa0839450:intron 45.0%
! CCCCAACTTTTTACTGTTCC+TGG - chr5_4:14466921-14466940 Msa0839450:intron 45.0%
GTTAGTCCTTGCATCAGACA+AGG - chr5_4:14466955-14466974 Msa0839450:intron 45.0%
GTGATTGGAAGTAACCAGTC+AGG + chr5_4:14467039-14467058 None:intergenic 45.0%
GCCTTCAAACCATGGTTAGA+TGG - chr5_4:14467067-14467086 Msa0839450:intron 45.0%
CCCATCTAACCATGGTTTGA+AGG + chr5_4:14467071-14467090 None:intergenic 45.0%
ATGAGAAGAAAGTGGGACAG+TGG + chr5_4:14467426-14467445 None:intergenic 45.0%
AACTTTGGACCAGAGTCACA+TGG + chr5_4:14467493-14467512 None:intergenic 45.0%
CCATGAATGAGGTCTACACA+AGG + chr5_4:14467548-14467567 None:intergenic 45.0%
CCTTGTGTAGACCTCATTCA+TGG - chr5_4:14467545-14467564 Msa0839450:intron 45.0%
CTAATTTCACCTTGGGGACA+AGG + chr5_4:14467600-14467619 None:intergenic 45.0%
! ATGGAAGCTGGGGAGAATTT+TGG - chr5_4:14467670-14467689 Msa0839450:intron 45.0%
CAATTGCAGCTGTTGCGTAT+TGG + chr5_4:14468049-14468068 None:intergenic 45.0%
GATCTTGCTTACCACTATCC+TGG + chr5_4:14468073-14468092 None:intergenic 45.0%
CAACACAATCGCAGAAGTCA+AGG + chr5_4:14468097-14468116 None:intergenic 45.0%
TTAGAACAGTAGTGGCAGAG+CGG + chr5_4:14468158-14468177 None:intergenic 45.0%
TCATATCACCTCATGGCTCA+GGG - chr5_4:14468219-14468238 Msa0839450:intron 45.0%
! AGGGCTTTTCTTCCACCTTT+GGG - chr5_4:14468238-14468257 Msa0839450:intron 45.0%
AAGTTTAGCAACCACTGGTG+AGG + chr5_4:14468283-14468302 None:intergenic 45.0%
CTCGAAAGTTTAGCAACCAC+TGG + chr5_4:14468288-14468307 None:intergenic 45.0%
CTCGCAAGTTTGAGGACAAT+TGG - chr5_4:14468396-14468415 Msa0839450:intron 45.0%
GACATTCTAGGCATAACTGG+AGG + chr5_4:14468447-14468466 None:intergenic 45.0%
TAGGAATGGGATTCCCTCAT+TGG + chr5_4:14468785-14468804 None:intergenic 45.0%
TGTTAACTCGGCATTATGGC+AGG - chr5_4:14469214-14469233 Msa0839450:intron 45.0%
GTTAACTCGGCATTATGGCA+GGG - chr5_4:14469215-14469234 Msa0839450:intron 45.0%
TGGTATGACACATCACGAAC+AGG + chr5_4:14469424-14469443 None:intergenic 45.0%
CCTACAAAGCATGGAGAAAG+TGG + chr5_4:14469444-14469463 None:intergenic 45.0%
CCACTTTCTCCATGCTTTGT+AGG - chr5_4:14469441-14469460 Msa0839450:intron 45.0%
! TTCTGAGGACCTACAAAGCA+TGG + chr5_4:14469453-14469472 None:intergenic 45.0%
!!! GGAGATCTTGTTTTTGGTGC+AGG - chr5_4:14469993-14470012 Msa0839450:CDS 45.0%
GATGCAGAACATTTCCTGCA+AGG - chr5_4:14470032-14470051 Msa0839450:CDS 45.0%
GAACATTTCCTGCAAGGAGT+TGG - chr5_4:14470038-14470057 Msa0839450:CDS 45.0%
GTTGTAAACCAACTCCTTGC+AGG + chr5_4:14470049-14470068 None:intergenic 45.0%
! GCAAGGAGTTGGTTTACAAC+AGG - chr5_4:14470049-14470068 Msa0839450:CDS 45.0%
!!! CTTAGTTTTGACGGTGGGGA+GGG + chr5_4:14465022-14465041 None:intergenic 50.0%
!!! GCAGAGCTTAGTTTTGACGG+TGG + chr5_4:14465028-14465047 None:intergenic 50.0%
!! GATTGGTTTGAGTTCGGCAC+GGG + chr5_4:14465097-14465116 None:intergenic 50.0%
!! GGATTGGTTTGAGTTCGGCA+CGG + chr5_4:14465098-14465117 None:intergenic 50.0%
! GAAATTCTCGACGTCGGTTG+TGG + chr5_4:14465172-14465191 None:intergenic 50.0%
! GATTCGGTTATCGTCGCTAC+CGG - chr5_4:14465351-14465370 Msa0839450:CDS 50.0%
TAACCGTTTCGCAACAGCTC+CGG + chr5_4:14465373-14465392 None:intergenic 50.0%
CCACGGTTCCAGTAACCATT+AGG + chr5_4:14465420-14465439 None:intergenic 50.0%
CCTAATGGTTACTGGAACCG+TGG - chr5_4:14465417-14465436 Msa0839450:intron 50.0%
CAGCACAAGCTGAAATCCCA+CGG + chr5_4:14465437-14465456 None:intergenic 50.0%
AAACCTTTGGCAGTGATCGG+TGG - chr5_4:14465489-14465508 Msa0839450:intron 50.0%
TGGTGGAGATTCAGCTATGG+AGG - chr5_4:14465509-14465528 Msa0839450:intron 50.0%
TCACCGAAGGGATACGTTTC+GGG - chr5_4:14465575-14465594 Msa0839450:intron 50.0%
AAGCCCGAAACGTATCCCTT+CGG + chr5_4:14465581-14465600 None:intergenic 50.0%
!! GTGGTTGAGGCTTTTGGAGA+TGG - chr5_4:14465663-14465682 Msa0839450:intron 50.0%
!! GGTTGAGGCTTTTGGAGATG+GGG - chr5_4:14465665-14465684 Msa0839450:intron 50.0%
GGGGAGAATAAGAAGCTTGG+GGG - chr5_4:14465684-14465703 Msa0839450:intron 50.0%
GGGTTTGAAGGTGGAGAATG+TGG - chr5_4:14465704-14465723 Msa0839450:intron 50.0%
!! CCGGCGACAAAGTTTTTGGA+TGG - chr5_4:14465786-14465805 Msa0839450:intron 50.0%
TGGGTATGTTGTGACGAAGC+CGG - chr5_4:14465830-14465849 Msa0839450:intron 50.0%
!! ACACTAGTCTTCGTAGTCCC+CGG + chr5_4:14465852-14465871 None:intergenic 50.0%
!!! GTTGAGGGTGTTTTTGCTGC+TGG - chr5_4:14465870-14465889 Msa0839450:intron 50.0%
!!! TGAGGGTGTTTTTGCTGCTG+GGG - chr5_4:14465872-14465891 Msa0839450:intron 50.0%
! TTTTGCTGCTGGGGATGTTC+AGG - chr5_4:14465881-14465900 Msa0839450:intron 50.0%
GCTATTACTGCTGCTGGATC+TGG - chr5_4:14465921-14465940 Msa0839450:intron 50.0%
!! GCCTTCGATTAGAAGTGTCG+GGG - chr5_4:14466103-14466122 Msa0839450:intron 50.0%
GACTAACAAACTCCCCAACC+AGG + chr5_4:14466942-14466961 None:intergenic 50.0%
TATTTAGCTGCGGACCTGAC+TGG - chr5_4:14467022-14467041 Msa0839450:intron 50.0%
ATGCATGCCCCATCTAACCA+TGG + chr5_4:14467079-14467098 None:intergenic 50.0%
GGAAACCAGAGGTTACTCTG+CGG - chr5_4:14467349-14467368 Msa0839450:intron 50.0%
AACTCCCATCCATGTGACTC+TGG - chr5_4:14467481-14467500 Msa0839450:intron 50.0%
TGGACCAGAGTCACATGGAT+GGG + chr5_4:14467488-14467507 None:intergenic 50.0%
TTGGACCAGAGTCACATGGA+TGG + chr5_4:14467489-14467508 None:intergenic 50.0%
! TGCTGATTGGGCCATGAATG+AGG + chr5_4:14467559-14467578 None:intergenic 50.0%
! GGGGACAAGGTGAGTCTTAT+TGG + chr5_4:14467587-14467606 None:intergenic 50.0%
TAAGACTCACCTTGTCCCCA+AGG - chr5_4:14467588-14467607 Msa0839450:intron 50.0%
! CTTGTTGTAGCTGCGATGCA+TGG - chr5_4:14467651-14467670 Msa0839450:intron 50.0%
GGAGCATAGTTATCCGATCG+AGG - chr5_4:14467691-14467710 Msa0839450:intron 50.0%
GCTGCAATTGTCCAGGATAG+TGG - chr5_4:14468059-14468078 Msa0839450:intron 50.0%
GAGGTGGTCATATCACCTCA+TGG - chr5_4:14468212-14468231 Msa0839450:intron 50.0%
GTCATATCACCTCATGGCTC+AGG - chr5_4:14468218-14468237 Msa0839450:intron 50.0%
AAGAAAAGCCCTGAGCCATG+AGG + chr5_4:14468230-14468249 None:intergenic 50.0%
! CAGGGCTTTTCTTCCACCTT+TGG - chr5_4:14468237-14468256 Msa0839450:intron 50.0%
! GGGCTTTTCTTCCACCTTTG+GGG - chr5_4:14468239-14468258 Msa0839450:intron 50.0%
! TTTCTGGGCTAGAACCCCAA+AGG + chr5_4:14468256-14468275 None:intergenic 50.0%
CACTGGTGAGGCAGATTTCT+GGG + chr5_4:14468271-14468290 None:intergenic 50.0%
GTGCTAGACTCGCAAGTTTG+AGG - chr5_4:14468388-14468407 Msa0839450:intron 50.0%
! AGATGCTGCTTGACAGAGCT+AGG + chr5_4:14468757-14468776 None:intergenic 50.0%
CAGCATCTGAGCACCAATGA+GGG - chr5_4:14468769-14468788 Msa0839450:intron 50.0%
CATCACGAACAGGATGCTCA+AGG + chr5_4:14469414-14469433 None:intergenic 50.0%
!! CGTGTTTGCTGTCATCACAC+TGG - chr5_4:14469496-14469515 Msa0839450:CDS 50.0%
!!! TGTTTTTGGTGCAGGGTGCA+TGG - chr5_4:14470001-14470020 Msa0839450:CDS 50.0%
!!! GCTTAGTTTTGACGGTGGGG+AGG + chr5_4:14465023-14465042 None:intergenic 55.0%
AAGCTCTGCATCATCGGCAG+TGG - chr5_4:14465039-14465058 Msa0839450:three_prime_UTR 55.0%
TGGCCATCCATCCTTCGAAG+AGG + chr5_4:14465119-14465138 None:intergenic 55.0%
! ATTCTCGACGTCGGTTGTGG+TGG + chr5_4:14465169-14465188 None:intergenic 55.0%
ACCGACGTCGAGAATTTCCC+CGG - chr5_4:14465174-14465193 Msa0839450:three_prime_UTR 55.0%
ACCGGGGAAATTCTCGACGT+CGG + chr5_4:14465178-14465197 None:intergenic 55.0%
AATTTCCCCGGTTTCCCCGA+CGG - chr5_4:14465186-14465205 Msa0839450:three_prime_UTR 55.0%
CTACCGGAGCTGTTGCGAAA+CGG - chr5_4:14465367-14465386 Msa0839450:intron 55.0%
GCGAAACGGTTACCGTTCAC+CGG - chr5_4:14465381-14465400 Msa0839450:intron 55.0%
ATTAGGACCATCACCGGAGC+CGG + chr5_4:14465403-14465422 None:intergenic 55.0%
!! CGGTGGTGGAGATTCAGCTA+TGG - chr5_4:14465506-14465525 Msa0839450:intron 55.0%
GAAGCTTGGGGGTTTGAAGG+TGG - chr5_4:14465695-14465714 Msa0839450:intron 55.0%
GGGTATGTTGTGACGAAGCC+GGG - chr5_4:14465831-14465850 Msa0839450:intron 55.0%
GGTATGTTGTGACGAAGCCG+GGG - chr5_4:14465832-14465851 Msa0839450:intron 55.0%
GCCCCGACACTTCTAATCGA+AGG + chr5_4:14466107-14466126 None:intergenic 55.0%
TGACTCCGCAGAGTAACCTC+TGG + chr5_4:14467357-14467376 None:intergenic 55.0%
TAGCTGCGATGCATGGAAGC+TGG - chr5_4:14467658-14467677 Msa0839450:intron 55.0%
AGCTGCGATGCATGGAAGCT+GGG - chr5_4:14467659-14467678 Msa0839450:intron 55.0%
CGCAACAGCTGCAATTGTCC+AGG - chr5_4:14468052-14468071 Msa0839450:intron 55.0%
CCACTGGTGAGGCAGATTTC+TGG + chr5_4:14468272-14468291 None:intergenic 55.0%
CCAGAAATCTGCCTCACCAG+TGG - chr5_4:14468269-14468288 Msa0839450:intron 55.0%
!! GATGGGTTGCACATGCACTC+TGG + chr5_4:14468668-14468687 None:intergenic 55.0%
GCTATGAACTCGACAACGCG+CGG - chr5_4:14468699-14468718 Msa0839450:intron 55.0%
GCAGCATCTGAGCACCAATG+AGG - chr5_4:14468768-14468787 Msa0839450:intron 55.0%
!! AGTTTTGACGGTGGGGAGGG+TGG + chr5_4:14465019-14465038 None:intergenic 60.0%
! TGGTTTGAGTTCGGCACGGG+CGG + chr5_4:14465094-14465113 None:intergenic 60.0%
ATGGCCAACGACATCGCTCC+AGG - chr5_4:14465132-14465151 Msa0839450:three_prime_UTR 60.0%
! CGTCGGTTGTGGTGGTGAGT+TGG + chr5_4:14465161-14465180 None:intergenic 60.0%
AGGATTCCGTCGGGGAAACC+GGG + chr5_4:14465195-14465214 None:intergenic 60.0%
GAGGATTCCGTCGGGGAAAC+CGG + chr5_4:14465196-14465215 None:intergenic 60.0%
GGTTTCCCCGACGGAATCCT+CGG - chr5_4:14465195-14465214 Msa0839450:three_prime_UTR 60.0%
AATCCTCGGCGGCGAACTCA+TGG - chr5_4:14465209-14465228 Msa0839450:three_prime_UTR 60.0%
! GGCTCCGGTGATGGTCCTAA+TGG - chr5_4:14465402-14465421 Msa0839450:intron 60.0%
CCACCACCGATCACTGCCAA+AGG + chr5_4:14465495-14465514 None:intergenic 60.0%
CCTTTGGCAGTGATCGGTGG+TGG - chr5_4:14465492-14465511 Msa0839450:intron 60.0%
GCTGCGATGCATGGAAGCTG+GGG - chr5_4:14467660-14467679 Msa0839450:intron 60.0%
AGTAGTGGCAGAGCGGCATC+TGG + chr5_4:14468151-14468170 None:intergenic 60.0%
! CTGGGCTAGAACCCCAAAGG+TGG + chr5_4:14468253-14468272 None:intergenic 60.0%
ATGAACTCGACAACGCGCGG+AGG - chr5_4:14468702-14468721 Msa0839450:intron 60.0%
TGCAGGGTGCATGGCAGCTT+TGG - chr5_4:14470010-14470029 Msa0839450:CDS 60.0%
TTCGGCACGGGCGGCGTATA+CGG + chr5_4:14465085-14465104 None:intergenic 65.0%
GCCAACGACATCGCTCCAGG+AGG - chr5_4:14465135-14465154 Msa0839450:three_prime_UTR 65.0%
GCCTCCTGGAGCGATGTCGT+TGG + chr5_4:14465139-14465158 None:intergenic 65.0%
! GTGGTGGTGAGTTGGCCTCC+TGG + chr5_4:14465153-14465172 None:intergenic 65.0%
GGATTCCGTCGGGGAAACCG+GGG + chr5_4:14465194-14465213 None:intergenic 65.0%
TTCCCCGACGGAATCCTCGG+CGG - chr5_4:14465198-14465217 Msa0839450:three_prime_UTR 65.0%
TTCGCCGCCGAGGATTCCGT+CGG + chr5_4:14465205-14465224 None:intergenic 65.0%
GTTCCATGAGTTCGCCGCCG+AGG + chr5_4:14465215-14465234 None:intergenic 65.0%
!! CGGTTACCGTTCACCGGCTC+CGG - chr5_4:14465387-14465406 Msa0839450:intron 65.0%
CCATCACCGGAGCCGGTGAA+CGG + chr5_4:14465396-14465415 None:intergenic 65.0%
GAGCGGCATCTGGCTGCTAC+AGG + chr5_4:14468141-14468160 None:intergenic 65.0%
GTATACGGCGGCGGTGTGGG+CGG + chr5_4:14465070-14465089 None:intergenic 70.0%
GGCGTATACGGCGGCGGTGT+GGG + chr5_4:14465073-14465092 None:intergenic 70.0%
TCGCCGCCGAGGATTCCGTC+GGG + chr5_4:14465204-14465223 None:intergenic 70.0%
!! CCGTTCACCGGCTCCGGTGA+TGG - chr5_4:14465393-14465412 Msa0839450:intron 70.0%
CGGCGTATACGGCGGCGGTG+TGG + chr5_4:14465074-14465093 None:intergenic 75.0%
ACGGGCGGCGTATACGGCGG+CGG + chr5_4:14465079-14465098 None:intergenic 75.0%
GGCACGGGCGGCGTATACGG+CGG + chr5_4:14465082-14465101 None:intergenic 75.0%
CGCCGCCGAGGATTCCGTCG+GGG + chr5_4:14465203-14465222 None:intergenic 75.0%
! TACGGCGGCGGTGTGGGCGG+CGG + chr5_4:14465067-14465086 None:intergenic 80.0%
! ACGGCGGCGGTGTGGGCGGC+GGG + chr5_4:14465066-14465085 None:intergenic 85.0%
! CGGCGGCGGTGTGGGCGGCG+GGG + chr5_4:14465065-14465084 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 14465003 14470387 14465003 ID=Msa0839450;Name=Msa0839450
chr5_4 mRNA 14465003 14470387 14465003 ID=Msa0839450-mRNA-1;Parent=Msa0839450;Name=Msa0839450-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0.33|0.66|0|0.33|3|302|361
chr5_4 exon 14465003 14465375 14465003 ID=Msa0839450-mRNA-1:exon:6316;Parent=Msa0839450-mRNA-1
chr5_4 exon 14467210 14467316 14467210 ID=Msa0839450-mRNA-1:exon:6315;Parent=Msa0839450-mRNA-1
chr5_4 exon 14469480 14470387 14469480 ID=Msa0839450-mRNA-1:exon:6314;Parent=Msa0839450-mRNA-1
chr5_4 CDS 14469480 14470387 14469480 ID=Msa0839450-mRNA-1:cds;Parent=Msa0839450-mRNA-1
chr5_4 CDS 14467210 14467316 14467210 ID=Msa0839450-mRNA-1:cds;Parent=Msa0839450-mRNA-1
chr5_4 CDS 14465305 14465375 14465305 ID=Msa0839450-mRNA-1:cds;Parent=Msa0839450-mRNA-1
chr5_4 three_prime_UTR 14465003 14465304 14465003 ID=Msa0839450-mRNA-1:three_prime_utr;Parent=Msa0839450-mRNA-1
Gene Sequence

>Msa0839450

ATGACTGACAACACCACCCTCCCCACCGTCAAAACTAAGCTCTGCATCATCGGCAGTGGCCCCGCCGCCCACACCGCCGCCGTATACGCCGCCCGTGCCGAACTCAAACCAATCCTCTTCGAAGGATGGATGGCCAACGACATCGCTCCAGGAGGCCAACTCACCACCACAACCGACGTCGAGAATTTCCCCGGTTTCCCCGACGGAATCCTCGGCGGCGAACTCATGGAACGTTGCCGTCAACAGTCCGCTAAATTTGGAACCGAGATCTTCACCGAAACGGTTTCTAAGGTTGATTTCTCTTCTCGTCCTTTTAGGGTTTTCACTGATTCACGTACTGTTGAAGCTGATTCGGTTATCGTCGCTACCGGAGCTGTTGCGAAACGGTTACCGTTCACCGGCTCCGGTGATGGTCCTAATGGTTACTGGAACCGTGGGATTTCAGCTTGTGCTGTATGTGACGGTGCTGCTCCGATCTTTCGTAACAAACCTTTGGCAGTGATCGGTGGTGGAGATTCAGCTATGGAGGAAGCAACGTTTTTGACAAAATACGGTTCTGAAGTTTACATCATTCACCGAAGGGATACGTTTCGGGCTTCAAAGATTATGCAGAGTAAAGCTTTGAGTAATGATAAGATTAAGGTGATTTGGAATTCAATGGTGGTTGAGGCTTTTGGAGATGGGGAGAATAAGAAGCTTGGGGGTTTGAAGGTGGAGAATGTGGTGACAAAAGAGGTTTCTGATTTGAAGGTTTCTGGGTTGTTCTTTGCAATTGGGCATGAACCGGCGACAAAGTTTTTGGATGGTCAGTTAGAGCTTGATTCTGATGGGTATGTTGTGACGAAGCCGGGGACTACGAAGACTAGTGTTGAGGGTGTTTTTGCTGCTGGGGATGTTCAGGATAAGAAGATAGTGGTAAGCAAGATCACCTTGACTTCTGCGATTGTGTTGAAAAATGCAACGCTTGGAAGTCCTGTAGCAGCCAGATGCCGCTCTGCCACTACTGTTCTAATTGGGTGCATGGCAGCTTTGGATGCAGAACATTTCCTGCAAGGAGTTGGTTTACAACAGGATAAGAGCGATTGA
Protein sequence

>Msa0839450

MTDNTTLPTVKTKLCIIGSGPAAHTAAVYAARAELKPILFEGWMANDIAPGGQLTTTTDVENFPGFPDGILGGELMERCRQQSAKFGTEIFTETVSKVDFSSRPFRVFTDSRTVEADSVIVATGAVAKRLPFTGSGDGPNGYWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEATFLTKYGSEVYIIHRRDTFRASKIMQSKALSNDKIKVIWNSMVVEAFGDGENKKLGGLKVENVVTKEVSDLKVSGLFFAIGHEPATKFLDGQLELDSDGYVVTKPGTTKTSVEGVFAAGDVQDKKIVVSKITLTSAIVLKNATLGSPVAARCRSATTVLIGCMAALDAEHFLQGVGLQQDKSD*