AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047640 MtrunA17_Chr4g0040471 97.178 886 3 1 1 864 1 886 0.0 1757
Msa0047640 MtrunA17_Chr8g0392281 22.622 473 300 14 343 793 379 807 9.06e-15 79.0
Msa0047640 MtrunA17_Chr2g0311201 22.410 473 301 14 343 793 377 805 5.30e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047640 AT2G20580.1 81.271 897 129 5 1 864 1 891 0.0 1457
Msa0047640 AT4G28470.1 79.171 893 149 4 3 864 5 891 0.0 1432
Msa0047640 AT4G08140.1 80.000 70 14 0 51 120 2 71 2.47e-30 115
Msa0047640 AT1G04810.1 22.766 470 304 14 343 793 377 806 2.67e-14 77.8
Msa0047640 AT2G32730.1 22.766 470 304 14 343 793 377 806 3.07e-14 77.8

Find 228 sgRNAs with CRISPR-Local

Find 641 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATGGTGTCAGAAATT+TGG 0.163690 1_1:+80714418 Msa0047640:intron
GACTAGAATTGGTGCAATTA+TGG 0.180764 1_1:+80719872 Msa0047640:CDS
TTGACAAAACAAACTTTAAA+AGG 0.192273 1_1:+80714947 Msa0047640:CDS
GGCCTTGGTCTTCTTTATCT+TGG 0.200767 1_1:+80720216 Msa0047640:CDS
CATGCAGGTGCAAAATCTTT+TGG 0.202835 1_1:+80720650 Msa0047640:intron
AAAACCTCACCTGCTCATTC+TGG 0.227874 1_1:-80719920 None:intergenic
TAAAGGACAATCCAGATTAT+AGG 0.228060 1_1:+80722100 Msa0047640:CDS
ACCCCTGTTCTCCTGGCTGC+TGG 0.245592 1_1:+80721926 Msa0047640:CDS
GCTGGTGCTGGCGCCGTTGC+CGG 0.280560 1_1:-80713392 None:intergenic
TCTTCAAGTAGTGGTTCTTC+TGG 0.284064 1_1:+80719432 Msa0047640:CDS
AGCAATCATATTTACATTGA+TGG 0.285349 1_1:+80720143 Msa0047640:CDS
AAATACTATCAAAATGTAAA+AGG 0.288699 1_1:+80722200 Msa0047640:three_prime_UTR
GCCTTCACTGCAATTGCATT+GGG 0.289158 1_1:+80720081 Msa0047640:CDS
TGCCCAAGGTCTTGTACATT+TGG 0.290221 1_1:+80721384 Msa0047640:CDS
GCATTTGTTAATGCCGGATT+TGG 0.293129 1_1:+80719280 Msa0047640:CDS
GCGCCGTTGCCGGCGCGGTT+AGG 0.294433 1_1:-80713382 None:intergenic
TGTCATTGCTGGTGCATTAC+TGG 0.297812 1_1:+80719676 Msa0047640:CDS
CTAGGTTCAGAGGGAGATAT+TGG 0.298113 1_1:+80714212 Msa0047640:CDS
TCTTAGGCACATTTGCTTGA+TGG 0.300355 1_1:+80719193 Msa0047640:intron
TTCTCCTGGCTGCTGGGGAT+AGG 0.305991 1_1:+80721933 Msa0047640:CDS
TTCGTCATTGCAGAAGTATT+TGG 0.307151 1_1:+80713995 Msa0047640:intron
TATGGCGGAATCAGAGTTAA+AGG 0.315185 1_1:+80713895 Msa0047640:CDS
CGTGCAGTCAGATGAAGATT+TGG 0.320246 1_1:+80713571 Msa0047640:intron
ATTTGATCAGGTCAATGTTA+TGG 0.321936 1_1:+80721030 Msa0047640:intron
AATGCAATTTGCAGTGCATT+TGG 0.325383 1_1:-80716445 None:intergenic
AAAGGACAATCCAGATTATA+GGG 0.325952 1_1:+80722101 Msa0047640:CDS
TTTGGCGGTGCCGCTGGTGC+TGG 0.327421 1_1:-80713404 None:intergenic
TCCCCAGCAGCCAGGAGAAC+AGG 0.334078 1_1:-80721929 None:intergenic
TGTTCTCTACTTCCTCGTTT+TGG 0.335578 1_1:+80721686 Msa0047640:CDS
TGTGAGTGTGTTAAATTAAA+AGG 0.336064 1_1:-80713247 None:intergenic
ATTGGTGCAATTATGGGATT+AGG 0.338723 1_1:+80719879 Msa0047640:CDS
CCCCTGTTCTCCTGGCTGCT+GGG 0.345055 1_1:+80721927 Msa0047640:CDS
CCCCTATCACCAATTCTTGA+AGG 0.345401 1_1:+80722066 Msa0047640:CDS
ACTAGAATTGGTGCAATTAT+GGG 0.345863 1_1:+80719873 Msa0047640:CDS
CTCCCTCAGCAGACATTGTA+AGG 0.346118 1_1:-80714040 None:intergenic
CAAATATCCTTCACTTAACT+TGG 0.350252 1_1:-80717016 None:intergenic
TGAAAGCCGGTGATTGTCTT+AGG 0.351647 1_1:-80721893 None:intergenic
ATTACAAAACCTTCAAGAAT+TGG 0.353080 1_1:-80722075 None:intergenic
TGCACCTTGTATATATCTTC+AGG 0.356157 1_1:-80717078 None:intergenic
GGCTGACATATTATCAGTAT+TGG 0.356961 1_1:+80714016 Msa0047640:CDS
GTTATCTCCTTGGGTCTAAT+AGG 0.358044 1_1:+80721189 Msa0047640:CDS
GCCTTGGTCTTCTTTATCTT+GGG 0.359647 1_1:+80720217 Msa0047640:CDS
GTTGCCGGCGCGGTTAGGTT+CGG 0.361415 1_1:-80713377 None:intergenic
GTAGCAATGGCTGAAGAATT+AGG 0.361899 1_1:+80720741 Msa0047640:CDS
GCCCAAGGTCTTGTACATTT+GGG 0.363986 1_1:+80721385 Msa0047640:CDS
TGACATGGTTATCATTACTA+TGG 0.373993 1_1:-80719658 None:intergenic
TGCCTTCACTGCAATTGCAT+TGG 0.375145 1_1:+80720080 Msa0047640:CDS
GAAGATAGTTCGACTAGAAT+TGG 0.377228 1_1:+80719861 Msa0047640:CDS
GACTAGTGCTGCTGCAAGTC+TGG 0.377954 1_1:+80719488 Msa0047640:CDS
GCCTCTATCAGTGCCTGTTC+GGG 0.382032 1_1:+80721832 Msa0047640:CDS
TAAGGCATATTATGAAACTA+TGG 0.383151 1_1:+80713877 Msa0047640:CDS
ACAAACAATGCTCGAATTGC+CGG 0.384804 1_1:+80721219 Msa0047640:CDS
TCATGTGCCTATGCTGGAAC+TGG 0.385983 1_1:+80720536 Msa0047640:CDS
AGCCTCTATCAGTGCCTGTT+CGG 0.386811 1_1:+80721831 Msa0047640:CDS
TTGCCGGCGCGGTTAGGTTC+GGG 0.387598 1_1:-80713376 None:intergenic
CGAAGAACGAGAAGTGTTGC+AGG 0.387775 1_1:+80716978 Msa0047640:CDS
TTCGTCTTTGGCGGTGCCGC+TGG 0.390264 1_1:-80713410 None:intergenic
CGACTTCTCCCTCTTGGCCT+TGG 0.391180 1_1:+80720201 Msa0047640:CDS
CATGGGGACATGAGTATGTT+AGG 0.392382 1_1:+80714237 Msa0047640:CDS
TCATTCTACCCCTGTTCTCC+TGG 0.393262 1_1:+80721919 Msa0047640:CDS
GTAGTGGTTCTTCTGGAAAC+TGG 0.395865 1_1:+80719439 Msa0047640:CDS
TTAGAACATCTTCTACAGTA+TGG 0.397139 1_1:+80720786 Msa0047640:CDS
TCTCCTGGCTGCTGGGGATA+GGG 0.401494 1_1:+80721934 Msa0047640:CDS
CATCACTCTTCCCTATAATC+TGG 0.405215 1_1:-80722111 None:intergenic
AACCTTCAAGAATTGGTGAT+AGG 0.407353 1_1:-80722068 None:intergenic
TTTCACGCTAAATCGAACTT+AGG 0.407501 1_1:+80713325 Msa0047640:five_prime_UTR
CTTGATGGCCGTGCAAGTGC+TGG 0.408444 1_1:+80719208 Msa0047640:CDS
TCTTCTTTATCTTGGGAAGC+AGG 0.420669 1_1:+80720224 Msa0047640:CDS
ACTGCTTGGCCAACCCGAAC+AGG 0.423439 1_1:-80721845 None:intergenic
GTTGTATGTTGAGAGGGTTC+AGG 0.424586 1_1:+80713613 Msa0047640:CDS
CGAGCAGTTCCTCTGGCACT+TGG 0.426143 1_1:+80720825 Msa0047640:CDS
ACAGGCAGCAGTTATCTCCT+TGG 0.429907 1_1:+80721179 Msa0047640:intron
CACCAAGGTCCTGCAGTCCT+TGG 0.430705 1_1:+80720708 Msa0047640:CDS
ACTGCAAATTGCATTGTTCA+TGG 0.433433 1_1:+80716453 Msa0047640:CDS
TTGGAGAATTTAACAGATTG+AGG 0.433469 1_1:-80713210 None:intergenic
TGTTAATGCCGGATTTGGTC+AGG 0.436038 1_1:+80719285 Msa0047640:CDS
TGCGGCAGCTTCGTCTTTGG+CGG 0.436686 1_1:-80713419 None:intergenic
GTTAATGCATTTGTTAATGC+CGG 0.439292 1_1:+80719274 Msa0047640:CDS
CGTAGAAACTTCAGTGGCTT+GGG 0.439539 1_1:-80713836 None:intergenic
CTCCCTCTGAACCTAGTAAT+CGG 0.440688 1_1:-80714205 None:intergenic
CTTACGCGACTTCTCCCTCT+TGG 0.441492 1_1:+80720195 Msa0047640:CDS
ATCATGGCTAAGTCTGCTTA+AGG 0.441554 1_1:-80721056 None:intergenic
GTGTCGATTAATTTGAAAGA+TGG 0.442501 1_1:+80722309 Msa0047640:three_prime_UTR
GAAGATCGAGAGCGAAGATC+TGG 0.445605 1_1:+80713447 Msa0047640:CDS
AAACCTCACCTGCTCATTCT+GGG 0.446754 1_1:-80719919 None:intergenic
TGAAACATACACAAAATAGA+AGG 0.448647 1_1:-80721284 None:intergenic
AATGATAACCATGTCATTGC+TGG 0.449019 1_1:+80719665 Msa0047640:CDS
CAGGCAGCAGTTATCTCCTT+GGG 0.449890 1_1:+80721180 Msa0047640:intron
GGCAACGGCGCCAGCACCAG+CGG 0.456358 1_1:+80713394 Msa0047640:CDS
TTCACGCTAAATCGAACTTA+GGG 0.456411 1_1:+80713326 Msa0047640:five_prime_UTR
GAAAGATGGTTTATTAATTG+TGG 0.457827 1_1:+80722323 Msa0047640:three_prime_UTR
AGCAGTAGACGTTGTTGGAC+AGG 0.459860 1_1:+80721862 Msa0047640:CDS
TCATTGTACCTGACCAAATC+CGG 0.459928 1_1:-80719293 None:intergenic
AGAGGGAGAAGTCGCGTAAG+AGG 0.462942 1_1:-80720192 None:intergenic
CTACTATCATGTGCCTATGC+TGG 0.463677 1_1:+80720530 Msa0047640:CDS
AATGTCTGCTGAGGGAGAAC+GGG 0.467324 1_1:+80714046 Msa0047640:CDS
TTACTATGGGATGTTGACTC+TGG 0.470974 1_1:+80719611 Msa0047640:CDS
GCCACATTACGGTACTCTTA+AGG 0.471860 1_1:+80713859 Msa0047640:CDS
ATCAAAAGATCAACAGCCTC+TGG 0.472093 1_1:-80714800 None:intergenic
TCACACTTCCTCTTCTCCGA+TGG 0.473659 1_1:+80713351 Msa0047640:exon
TCCCAAATGTACAAGACCTT+GGG 0.474672 1_1:-80721386 None:intergenic
ATCACGTCAAGCGAAGCTTT+AGG 0.474727 1_1:-80720057 None:intergenic
ACCTTCAAGAATTGGTGATA+GGG 0.476467 1_1:-80722067 None:intergenic
CAGAGGGAGATATTGGTTCA+TGG 0.477824 1_1:+80714219 Msa0047640:CDS
AGTCTCAAATACCGATTACT+AGG 0.479190 1_1:+80714194 Msa0047640:CDS
TTTGGCTTTGAAGCAACAGC+TGG 0.479199 1_1:+80713589 Msa0047640:CDS
TGCTGGCGCCGTTGCCGGCG+CGG 0.483349 1_1:-80713387 None:intergenic
AGAGCAACCTTCTGCAACCC+GGG 0.485765 1_1:-80713644 None:intergenic
CCGTAGAAACTTCAGTGGCT+TGG 0.486666 1_1:-80713837 None:intergenic
AAGTTTCTACGGCCACATTA+CGG 0.488041 1_1:+80713848 Msa0047640:CDS
TTCCCAAATGTACAAGACCT+TGG 0.489170 1_1:-80721387 None:intergenic
CTGCCCTATCCCCAGCAGCC+AGG 0.494849 1_1:-80721937 None:intergenic
ATTAAAAGTCTTTGAAACTT+CGG 0.496334 1_1:-80720477 None:intergenic
AGAGGGAGATATTGGTTCAT+GGG 0.496959 1_1:+80714220 Msa0047640:CDS
GCCCAATGCAATTGCAGTGA+AGG 0.498300 1_1:-80720082 None:intergenic
TCCAATACTAGCATATCATC+TGG 0.498885 1_1:-80716385 None:intergenic
TATGGTGTCAGAAATTTGGC+TGG 0.499427 1_1:+80714422 Msa0047640:intron
TATTCGCCGAGCAGTTCCTC+TGG 0.500504 1_1:+80720818 Msa0047640:CDS
TGCAGTCCTTGGAATTGCTA+TGG 0.502997 1_1:+80720719 Msa0047640:CDS
CAATGTCTGCTGAGGGAGAA+CGG 0.504450 1_1:+80714045 Msa0047640:CDS
GTCATTGCTGGTGCATTACT+GGG 0.505397 1_1:+80719677 Msa0047640:CDS
ACACAATAGCTTTCATATCA+AGG 0.505784 1_1:-80721647 None:intergenic
GGTCTTGTACATTTGGGAAA+GGG 0.507186 1_1:+80721391 Msa0047640:CDS
GATCGGAGTGAGTCAGAGTT+GGG 0.508316 1_1:+80720165 Msa0047640:CDS
CCCTGTTCTCCTGGCTGCTG+GGG 0.508335 1_1:+80721928 Msa0047640:CDS
GGATTAGGAATTGCATATGC+TGG 0.510069 1_1:+80719894 Msa0047640:CDS
AAGAGCAACCTTCTGCAACC+CGG 0.510865 1_1:-80713645 None:intergenic
GATATGAAAGCTATTGTGTT+GGG 0.511246 1_1:+80721651 Msa0047640:CDS
TATATATCTTCAGGGGACTT+AGG 0.511864 1_1:-80717069 None:intergenic
GCACCTTGTATATATCTTCA+GGG 0.512615 1_1:-80717077 None:intergenic
ACCCGAACAGGCACTGATAG+AGG 0.514416 1_1:-80721833 None:intergenic
TGGCTTGGGCACTGAAGTCA+TGG 0.515550 1_1:-80713822 None:intergenic
GGATCGGAGTGAGTCAGAGT+TGG 0.515747 1_1:+80720164 Msa0047640:CDS
ACCAGATGATATGCTAGTAT+TGG 0.515944 1_1:+80716384 Msa0047640:CDS
TCATATTTACATTGATGGAT+CGG 0.517102 1_1:+80720148 Msa0047640:CDS
GCTTTAGGATCACTCAGAAT+AGG 0.517639 1_1:-80720042 None:intergenic
TGCATTGGGCTTGATTTACG+TGG 0.518309 1_1:+80720095 Msa0047640:CDS
CAACTTCTGAATCAGTATCA+TGG 0.519781 1_1:-80721072 None:intergenic
GAACCTAACCGCGCCGGCAA+CGG 0.523030 1_1:+80713379 Msa0047640:CDS
CTCCATGACTTCAATATCAC+GGG 0.523436 1_1:-80717046 None:intergenic
CTTTCAGTTACGATACAAGT+TGG 0.527671 1_1:+80720017 Msa0047640:intron
TCCTTGGGTCTAATAGGCGC+TGG 0.528692 1_1:+80721195 Msa0047640:CDS
CCCCAGCAGCCAGGAGAACA+GGG 0.529499 1_1:-80721928 None:intergenic
GCATCAGATTCTTCAAGTAG+TGG 0.529733 1_1:+80719423 Msa0047640:CDS
GTCCAACAACGTCTACTGCT+TGG 0.531076 1_1:-80721859 None:intergenic
AAAGAAGACCAAGGCCAAGA+GGG 0.534797 1_1:-80720209 None:intergenic
ATTGTTCATGGATAACCTGC+TGG 0.537779 1_1:+80716465 Msa0047640:CDS
TGAAAGATTGCGAAGCATGC+CGG 0.538412 1_1:-80721238 None:intergenic
CACTTGCACCAGCACTTGCA+CGG 0.542212 1_1:-80719216 None:intergenic
AGGGTTCAGGATACTGACCC+CGG 0.543270 1_1:+80713626 Msa0047640:CDS
TCATGGAGCTTGTAGAAGTA+CGG 0.544317 1_1:-80713805 None:intergenic
TGCCCGTGATATTGAAGTCA+TGG 0.546113 1_1:+80717044 Msa0047640:CDS
GGCCAAGCAGTAGACGTTGT+TGG 0.547192 1_1:+80721857 Msa0047640:CDS
TTCGGGAGCCATCGGAGAAG+AGG 0.550433 1_1:-80713359 None:intergenic
AAGACACGGTCAGAATGATA+AGG 0.550929 1_1:-80721430 None:intergenic
CTATCAGTGCCTGTTCGGGT+TGG 0.551095 1_1:+80721836 Msa0047640:CDS
GCTGGTGCATTACTGGGAGT+TGG 0.551767 1_1:+80719683 Msa0047640:CDS
TTCCAAGGACTGCAGGACCT+TGG 0.552548 1_1:-80720710 None:intergenic
GATGTTGTTGACTGTGGATG+AGG 0.554247 1_1:+80721802 Msa0047640:CDS
AGGTCTTGTACATTTGGGAA+AGG 0.555099 1_1:+80721390 Msa0047640:CDS
AACAATTCCAAGTTAAGTGA+AGG 0.556109 1_1:+80717009 Msa0047640:CDS
CCTTCAAGAATTGGTGATAG+GGG 0.557370 1_1:-80722066 None:intergenic
TACTGACCCCGGGTTGCAGA+AGG 0.557812 1_1:+80713637 Msa0047640:CDS
TTGTAGGCAATGGCACTCCT+TGG 0.558145 1_1:+80719822 Msa0047640:intron
ATTGAGGTTTCTTGTTGCAG+AGG 0.558950 1_1:-80713194 None:intergenic
TGCTGGTTCCCAGAATGAGC+AGG 0.560900 1_1:+80719911 Msa0047640:CDS
CCAAGCCACTGAAGTTTCTA+CGG 0.562286 1_1:+80713837 Msa0047640:CDS
CGGTTAGGTTCGGGAGCCAT+CGG 0.562440 1_1:-80713367 None:intergenic
GTAGAAGATGTTCTAACGAT+CGG 0.567757 1_1:-80720779 None:intergenic
TCCACAGTCAACAACATCCT+CGG 0.571268 1_1:-80721797 None:intergenic
TCTTTCAAGCTATTACTACA+AGG 0.573652 1_1:+80721254 Msa0047640:CDS
ACTAGCATATCATCTGGTCC+AGG 0.575933 1_1:-80716379 None:intergenic
GGTCGTCCTAAGACAATCAC+CGG 0.576068 1_1:+80721887 Msa0047640:CDS
AGCTGGAGTTGTATGTTGAG+AGG 0.576584 1_1:+80713606 Msa0047640:CDS
GCTGGAGTTGTATGTTGAGA+GGG 0.577745 1_1:+80713607 Msa0047640:CDS
ACATACACAAAATAGAAGGC+TGG 0.579470 1_1:-80721280 None:intergenic
TGGAATTGCTATGGTAGCAA+TGG 0.582283 1_1:+80720728 Msa0047640:CDS
GGCCCTTACAATGTCTGCTG+AGG 0.582711 1_1:+80714037 Msa0047640:CDS
GTAGACGTTGTTGGACAGGC+AGG 0.584047 1_1:+80721866 Msa0047640:CDS
GCTCCATGACTTCAATATCA+CGG 0.591509 1_1:-80717047 None:intergenic
TGATATGAAAGCTATTGTGT+TGG 0.593763 1_1:+80721650 Msa0047640:CDS
GCATTGGGCTTGATTTACGT+GGG 0.594648 1_1:+80720096 Msa0047640:CDS
TGTATCTGACAAGTTCAGCT+AGG 0.595489 1_1:+80714977 Msa0047640:CDS
GCCCTTACAATGTCTGCTGA+GGG 0.595569 1_1:+80714038 Msa0047640:CDS
CTACAGGTGCGGATTGCCCA+AGG 0.595817 1_1:+80721370 Msa0047640:intron
TACTGATTCAGAAGTTGCAA+TGG 0.600180 1_1:+80721078 Msa0047640:CDS
TCAAGAATATGCAAAACGAC+AGG 0.600683 1_1:+80714454 Msa0047640:CDS
AACATTCCCAGTTCCAGCAT+AGG 0.601552 1_1:-80720543 None:intergenic
GAGGGAGATATTGGTTCATG+GGG 0.601739 1_1:+80714221 Msa0047640:CDS
ATACCGATTACTAGGTTCAG+AGG 0.603273 1_1:+80714202 Msa0047640:CDS
TCCAGCGCCTATTAGACCCA+AGG 0.605628 1_1:-80721196 None:intergenic
GTCCCCTGAAGATATATACA+AGG 0.607347 1_1:+80717074 Msa0047640:CDS
TACCGATTACTAGGTTCAGA+GGG 0.611712 1_1:+80714203 Msa0047640:CDS
ATAGCAATTCCAAGGACTGC+AGG 0.612981 1_1:-80720717 None:intergenic
TGGAACTGGGAATGTTCTCA+AGG 0.617089 1_1:+80720550 Msa0047640:CDS
TTGCTACCATAGCAATTCCA+AGG 0.618346 1_1:-80720725 None:intergenic
TAAAGAAGACCAAGGCCAAG+AGG 0.621416 1_1:-80720210 None:intergenic
CACAGCAGACCAAGTGCCAG+AGG 0.629366 1_1:-80720834 None:intergenic
GCCTTAAGAGTACCGTAATG+TGG 0.634211 1_1:-80713860 None:intergenic
CATGTGCCTATGCTGGAACT+GGG 0.635630 1_1:+80720537 Msa0047640:CDS
GTAATGCACCAGCAATGACA+TGG 0.635873 1_1:-80719673 None:intergenic
TGTTCACAACATCTTGACAA+AGG 0.637361 1_1:+80720678 Msa0047640:CDS
GGGTTCAGGATACTGACCCC+GGG 0.638406 1_1:+80713627 Msa0047640:CDS
CCCAGCAGCCAGGAGAACAG+GGG 0.638606 1_1:-80721927 None:intergenic
GCAGCATAATGCTGAACCAG+AGG 0.639545 1_1:+80714784 Msa0047640:intron
TATTTGATGATGTATTATTG+CGG 0.640289 1_1:+80722287 Msa0047640:three_prime_UTR
GGTAGAATGAGTCTGAAAGC+CGG 0.642327 1_1:-80721906 None:intergenic
GCTGTGTATATCAAACCCAA+AGG 0.645766 1_1:+80720851 Msa0047640:CDS
CATTAACAAAAGTAGCAGCA+AGG 0.648095 1_1:-80719258 None:intergenic
TGAAGAATTAGGTGTTGAGA+TGG 0.648729 1_1:+80720752 Msa0047640:CDS
GCTCCCGAACCTAACCGCGC+CGG 0.652018 1_1:+80713373 Msa0047640:CDS
AGGTTGCTCTTGAAAGCATG+AGG 0.652603 1_1:+80713657 Msa0047640:CDS
GTAACAACAGGAAAGTGTTG+AGG 0.652898 1_1:+80720448 Msa0047640:intron
AACTAAATACTGTTCAGACA+CGG 0.656708 1_1:-80722162 None:intergenic
TTACGTGGGTTCTTGCAATG+AGG 0.658349 1_1:+80720110 Msa0047640:CDS
CACCTTGTATATATCTTCAG+GGG 0.666070 1_1:-80717076 None:intergenic
TCCCTCAGCAGACATTGTAA+GGG 0.666227 1_1:-80714039 None:intergenic
GAGACTCAAACAAACCTGCA+TGG 0.668674 1_1:-80721709 None:intergenic
GCCGAGGATGTTGTTGACTG+TGG 0.669421 1_1:+80721796 Msa0047640:intron
GGCATATTATGAAACTATGG+CGG 0.673217 1_1:+80713880 Msa0047640:CDS
GACAAAGGTGAGATGCACCA+AGG 0.682675 1_1:+80720693 Msa0047640:CDS
AAACCTGCATGGCCAAAACG+AGG 0.682882 1_1:-80721698 None:intergenic
GGTCTTGCTGACAGCATGTG+AGG 0.684340 1_1:+80716615 Msa0047640:intron
GAGCAACCTTCTGCAACCCG+GGG 0.688966 1_1:-80713643 None:intergenic
CAAGTGCCAGAGGAACTGCT+CGG 0.690748 1_1:-80720824 None:intergenic
TCCCAAGATAAAGAAGACCA+AGG 0.693423 1_1:-80720218 None:intergenic
TGTGGCCGTAGAAACTTCAG+TGG 0.696714 1_1:-80713842 None:intergenic
CTTACGGTGATAGTAAGACA+CGG 0.711897 1_1:-80721444 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG + chr1_1:80717826-80717845 Msa0047640:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTTT+GGG + chr1_1:80717826-80717845 Msa0047640:intron 0.0%
!!! GTATATTTAATATTTTTGTA+AGG + chr1_1:80714342-80714361 Msa0047640:intron 10.0%
!! ATAATTAAATTATGAGAATT+CGG - chr1_1:80715665-80715684 None:intergenic 10.0%
!! CATAATTTAATTATTAAGTA+AGG + chr1_1:80715671-80715690 Msa0047640:intron 10.0%
!!! AACAATTATTAAAATTTTAC+AGG + chr1_1:80716350-80716369 Msa0047640:intron 10.0%
!!! TTTTCTTTATATATCATAAA+TGG + chr1_1:80717795-80717814 Msa0047640:intron 10.0%
!! GTAAAAAAATTATAAAAAGT+AGG + chr1_1:80718060-80718079 Msa0047640:intron 10.0%
!!! TATTTTAGTTAACAATTAAT+TGG + chr1_1:80718850-80718869 Msa0047640:intron 10.0%
!!! ATTTTAGTTAACAATTAATT+GGG + chr1_1:80718851-80718870 Msa0047640:intron 10.0%
!! TAAATTAAAAGGAAAAAAGT+GGG - chr1_1:80713239-80713258 None:intergenic 15.0%
!! TTAAATTAAAAGGAAAAAAG+TGG - chr1_1:80713240-80713259 None:intergenic 15.0%
!!! TATTGTATTTGTGTTTTATA+TGG + chr1_1:80714280-80714299 Msa0047640:intron 15.0%
!!! ATTTAATATTTTTGTAAGGA+AGG + chr1_1:80714346-80714365 Msa0047640:intron 15.0%
!!! TTTAATATTTTTGTAAGGAA+GGG + chr1_1:80714347-80714366 Msa0047640:intron 15.0%
!!! AATCTTATGTTTTTTACTTA+TGG + chr1_1:80714404-80714423 Msa0047640:intron 15.0%
!! TAAAGAATGATTTATCATTA+TGG + chr1_1:80715062-80715081 Msa0047640:intron 15.0%
!! AAAAAACTTCAATAATAGAT+AGG + chr1_1:80715438-80715457 Msa0047640:intron 15.0%
!!! TGATTTTTAATACATAATGA+AGG + chr1_1:80716159-80716178 Msa0047640:intron 15.0%
!!! TTCTATTTTTTTGTTTTGTT+TGG + chr1_1:80716301-80716320 Msa0047640:intron 15.0%
!!! TCTATTTTTTTGTTTTGTTT+GGG + chr1_1:80716302-80716321 Msa0047640:intron 15.0%
!!! AGTTGTTTAATTTTTGAAAA+CGG + chr1_1:80720355-80720374 Msa0047640:intron 15.0%
!! AAATACTATCAAAATGTAAA+AGG + chr1_1:80722200-80722219 Msa0047640:three_prime_UTR 15.0%
!! AATCCTCAACTATAAAATTA+GGG - chr1_1:80713687-80713706 None:intergenic 20.0%
!!! TTGTTTTTGTGTATTGAAAT+TGG + chr1_1:80713753-80713772 Msa0047640:intron 20.0%
!! TTCTATATTTAGAAATTGAG+TGG + chr1_1:80714075-80714094 Msa0047640:intron 20.0%
!! TTGACAAAACAAACTTTAAA+AGG + chr1_1:80714947-80714966 Msa0047640:CDS 20.0%
!! TAAATAACCAAATATTACGA+AGG + chr1_1:80715354-80715373 Msa0047640:intron 20.0%
!!! TGGATTTTTTTAGTTATAAG+TGG + chr1_1:80716258-80716277 Msa0047640:intron 20.0%
!! TTATGATTCAAATTGATGAA+AGG + chr1_1:80717199-80717218 Msa0047640:intron 20.0%
!!! GTGAATCATGTTTTATTATT+TGG + chr1_1:80717402-80717421 Msa0047640:intron 20.0%
!!! TCATGTTTTATTATTTGGTA+TGG + chr1_1:80717407-80717426 Msa0047640:intron 20.0%
!! ATGTGAAAAATTATAAGTGA+TGG - chr1_1:80717769-80717788 None:intergenic 20.0%
!!! AGAGAATTTTACATCAATTA+TGG - chr1_1:80718154-80718173 None:intergenic 20.0%
!! ATCATCATTGATCTAATTTA+TGG + chr1_1:80719528-80719547 Msa0047640:intron 20.0%
!! ACAGAAAAGGAAAAAATAAA+AGG - chr1_1:80719753-80719772 None:intergenic 20.0%
!!! TTTAATTTTTGAAAACGGTT+AGG + chr1_1:80720360-80720379 Msa0047640:intron 20.0%
!!! ATTAAAAGTCTTTGAAACTT+CGG - chr1_1:80720480-80720499 None:intergenic 20.0%
!! TACAAAAATGATAAAATGCA+GGG - chr1_1:80720884-80720903 None:intergenic 20.0%
!! ATACAAAAATGATAAAATGC+AGG - chr1_1:80720885-80720904 None:intergenic 20.0%
!! TTGTTGTAATAATTTCCAAT+CGG + chr1_1:80721559-80721578 Msa0047640:intron 20.0%
!!! AATAGTATATTACTTTTCTG+TGG - chr1_1:80721969-80721988 None:intergenic 20.0%
!!! TGAAGGTTTTGTAATTTTAA+AGG + chr1_1:80722083-80722102 Msa0047640:CDS 20.0%
!! AAATGAGAAAAACATGATTA+AGG - chr1_1:80722138-80722157 None:intergenic 20.0%
!!! TATTTGATGATGTATTATTG+CGG + chr1_1:80722287-80722306 Msa0047640:three_prime_UTR 20.0%
! TGTGAGTGTGTTAAATTAAA+AGG - chr1_1:80713250-80713269 None:intergenic 25.0%
!! TTCGAATTTTCACTCAATTT+AGG + chr1_1:80713489-80713508 Msa0047640:intron 25.0%
!! TCGAATTTTCACTCAATTTA+GGG + chr1_1:80713490-80713509 Msa0047640:intron 25.0%
!! AAACCCTAATTTTATAGTTG+AGG + chr1_1:80713681-80713700 Msa0047640:intron 25.0%
! GAATCCTCAACTATAAAATT+AGG - chr1_1:80713688-80713707 None:intergenic 25.0%
! TGTATTGAAATTGGAAAGTA+TGG + chr1_1:80713762-80713781 Msa0047640:intron 25.0%
! TAAGGCATATTATGAAACTA+TGG + chr1_1:80713877-80713896 Msa0047640:CDS 25.0%
! TAAGTAATAGCATGGTATTA+TGG + chr1_1:80713954-80713973 Msa0047640:intron 25.0%
!! TTGCTATTGCAAATTTAGTT+TGG + chr1_1:80714550-80714569 Msa0047640:intron 25.0%
!! AATATCTCATATCCTTCTTT+TGG + chr1_1:80714829-80714848 Msa0047640:intron 25.0%
! TATTCAGAAAGTGAACTTAA+CGG + chr1_1:80714864-80714883 Msa0047640:intron 25.0%
!!! ATGCAATCTTTTTTGTTGTT+AGG + chr1_1:80714894-80714913 Msa0047640:intron 25.0%
! TGGCCTACTTAAAAAATTAT+AGG + chr1_1:80715159-80715178 Msa0047640:intron 25.0%
!!! AGGCCTATAATTTTTTAAGT+AGG - chr1_1:80715165-80715184 None:intergenic 25.0%
! CAATTTAGTAGTAAGCATAT+TGG - chr1_1:80715295-80715314 None:intergenic 25.0%
! CAATATGCTTACTACTAAAT+TGG + chr1_1:80715293-80715312 Msa0047640:intron 25.0%
! TAAATTGGTCAAATCTTATG+AGG + chr1_1:80715308-80715327 Msa0047640:intron 25.0%
! AAATTGGTCAAATCTTATGA+GGG + chr1_1:80715309-80715328 Msa0047640:intron 25.0%
! TAAATAGCTAAATCATACGA+AGG + chr1_1:80715403-80715422 Msa0047640:intron 25.0%
!! CATGGACTATTTAGTTAAAT+AGG + chr1_1:80715489-80715508 Msa0047640:intron 25.0%
! TAAAGAGATGAAAGTAAGAA+TGG + chr1_1:80715846-80715865 Msa0047640:intron 25.0%
! CAATATCTGAAAATATCCTT+AGG - chr1_1:80716019-80716038 None:intergenic 25.0%
! CATAATGAAGGTTTATTAGA+TGG + chr1_1:80716171-80716190 Msa0047640:intron 25.0%
! TGAATAGTTTAAAGGTTCAT+TGG + chr1_1:80716214-80716233 Msa0047640:intron 25.0%
!!! TTTTAAGGAACACTTCTTTA+AGG - chr1_1:80716568-80716587 None:intergenic 25.0%
! CAAGTATAATTAACGAGTTT+CGG + chr1_1:80717240-80717259 Msa0047640:intron 25.0%
! AGGTCAATAAAAATTGAACT+CGG - chr1_1:80717291-80717310 None:intergenic 25.0%
!!! TATGGATGTATTAGTTTTGT+GGG + chr1_1:80717425-80717444 Msa0047640:intron 25.0%
!!! GTTATGCATTTTTTGAATTC+AGG + chr1_1:80717522-80717541 Msa0047640:intron 25.0%
!!! ATTTTTTGAATTCAGGAATC+TGG + chr1_1:80717529-80717548 Msa0047640:intron 25.0%
! AATTCCATTTAGCAACAAAT+GGG - chr1_1:80717556-80717575 None:intergenic 25.0%
! AAATTCCATTTAGCAACAAA+TGG - chr1_1:80717557-80717576 None:intergenic 25.0%
!!! TCTGTTTCTGCTTATTTTAA+AGG - chr1_1:80717657-80717676 None:intergenic 25.0%
!!! TTTTTTTGGGGAAATATGAA+TGG + chr1_1:80717841-80717860 Msa0047640:intron 25.0%
!! ATTTTTCCACTAATTGATCT+AGG - chr1_1:80717928-80717947 None:intergenic 25.0%
! CAAAACATTAAATCCAATCA+AGG - chr1_1:80718239-80718258 None:intergenic 25.0%
!!! TGTTTTGTTATTAAGTTTCC+AGG + chr1_1:80718252-80718271 Msa0047640:intron 25.0%
! TCAAAAATCAAGATACGATA+CGG + chr1_1:80718529-80718548 Msa0047640:intron 25.0%
! AAAAAAAATAAACCAGTCCT+AGG + chr1_1:80718634-80718653 Msa0047640:intron 25.0%
!!! TGAGTATATTGCTTCTTTTT+TGG - chr1_1:80718820-80718839 None:intergenic 25.0%
!!! AAACTGGCTTTTTAAAAACA+AGG + chr1_1:80719455-80719474 Msa0047640:CDS 25.0%
! TTATCCCTTGTATTATAACA+GGG + chr1_1:80719581-80719600 Msa0047640:intron 25.0%
! AAAAAATAAAAGGAACTCAC+AGG - chr1_1:80719743-80719762 None:intergenic 25.0%
!! ATCTTATTTGATTCCATTGT+AGG + chr1_1:80719806-80719825 Msa0047640:intron 25.0%
!!! CTTTTTCAATAAAATCACCA+AGG - chr1_1:80719842-80719861 None:intergenic 25.0%
! AGCAATCATATTTACATTGA+TGG + chr1_1:80720143-80720162 Msa0047640:CDS 25.0%
!! TCATATTTACATTGATGGAT+CGG + chr1_1:80720148-80720167 Msa0047640:CDS 25.0%
! ATACTTTGCAAACGTAAATA+AGG - chr1_1:80720325-80720344 None:intergenic 25.0%
!! ATTTTAAACATAAAAGGCTG+CGG - chr1_1:80720615-80720634 None:intergenic 25.0%
!! CCAGCAATTTTAAACATAAA+AGG - chr1_1:80720621-80720640 None:intergenic 25.0%
!!! CCTTTTATGTTTAAAATTGC+TGG + chr1_1:80720618-80720637 Msa0047640:intron 25.0%
! ATAGACAACAATGATTTAAG+AGG - chr1_1:80721117-80721136 None:intergenic 25.0%
! TCTTAAATCATTGTTGTCTA+TGG + chr1_1:80721116-80721135 Msa0047640:intron 25.0%
! TGAAACATACACAAAATAGA+AGG - chr1_1:80721287-80721306 None:intergenic 25.0%
!! GCAAAATAAGGTTTAACTTA+CGG - chr1_1:80721463-80721482 None:intergenic 25.0%
!!! ATTAAGACTAGCTTCAAATA+GGG - chr1_1:80721759-80721778 None:intergenic 25.0%
!!! AATTAAGACTAGCTTCAAAT+AGG - chr1_1:80721760-80721779 None:intergenic 25.0%
! ATTACAAAACCTTCAAGAAT+TGG - chr1_1:80722078-80722097 None:intergenic 25.0%
! GAAAGATGGTTTATTAATTG+TGG + chr1_1:80722323-80722342 Msa0047640:three_prime_UTR 25.0%
TTGGAGAATTTAACAGATTG+AGG - chr1_1:80713213-80713232 None:intergenic 30.0%
CTTTGTGTTAAGTAATAGCA+TGG + chr1_1:80713946-80713965 Msa0047640:intron 30.0%
TCGATTGTGTTATAGTTTGA+TGG + chr1_1:80714121-80714140 Msa0047640:intron 30.0%
TTGTAAACAATCGAATCACT+AGG + chr1_1:80714320-80714339 Msa0047640:intron 30.0%
! TACTTATGGTGTCAGAAATT+TGG + chr1_1:80714418-80714437 Msa0047640:intron 30.0%
AGATAATACCTTCATGTGAA+AGG - chr1_1:80714664-80714683 None:intergenic 30.0%
AGTTCACTTTCTGAATAGTT+CGG - chr1_1:80714861-80714880 None:intergenic 30.0%
!!! TCTTTTTTGTTGTTAGGTTG+AGG + chr1_1:80714900-80714919 Msa0047640:intron 30.0%
ATATTCTCTTAAAACTCCAG+AGG - chr1_1:80715012-80715031 None:intergenic 30.0%
! GACCTATTTCTTGAATTTCT+TGG + chr1_1:80715139-80715158 Msa0047640:intron 30.0%
TTGGTTATTTAGTAGCATGT+TGG - chr1_1:80715345-80715364 None:intergenic 30.0%
GATTAAGCCTTCGTAATATT+TGG - chr1_1:80715364-80715383 None:intergenic 30.0%
TGATTTAGCTATTTAGTAGC+AGG - chr1_1:80715398-80715417 None:intergenic 30.0%
AACTTCAATAATAGATAGGC+CGG + chr1_1:80715442-80715461 Msa0047640:intron 30.0%
TAACTAAATAGTCCATGCTA+AGG - chr1_1:80715486-80715505 None:intergenic 30.0%
! AGCCTAGCCTTTATATTAAA+CGG + chr1_1:80715528-80715547 Msa0047640:intron 30.0%
!!! TAAGGCTTTTTTAAAGCCTA+TGG - chr1_1:80715586-80715605 None:intergenic 30.0%
TAAAAAGAGATGCAGTGATT+CGG + chr1_1:80715717-80715736 Msa0047640:intron 30.0%
GGAGACTTCAAATATGATTA+AGG + chr1_1:80715867-80715886 Msa0047640:intron 30.0%
! AGTCTTGTATCTCAACAATA+GGG - chr1_1:80715943-80715962 None:intergenic 30.0%
GATATTGTAACACTAACAAC+TGG + chr1_1:80716032-80716051 Msa0047640:intron 30.0%
CAATATGTTTCTTTAGTTGC+TGG + chr1_1:80716089-80716108 Msa0047640:intron 30.0%
AATTGGGGTGAATAGTTTAA+AGG + chr1_1:80716206-80716225 Msa0047640:intron 30.0%
! AAATTTTACAGGTATCTTCC+TGG + chr1_1:80716361-80716380 Msa0047640:intron 30.0%
!! TGTGATTGATTTTCTCTCTA+TGG + chr1_1:80716530-80716549 Msa0047640:intron 30.0%
!! GAACACTTCTTTAAGGTATA+TGG - chr1_1:80716561-80716580 None:intergenic 30.0%
! TTTCAAACCACAAGCTTTTA+AGG - chr1_1:80716583-80716602 None:intergenic 30.0%
! TTGACAATTGATAACACTAG+AGG + chr1_1:80716839-80716858 Msa0047640:intron 30.0%
! TGACAATTGATAACACTAGA+GGG + chr1_1:80716840-80716859 Msa0047640:intron 30.0%
GACTTAAAATTTCACTCAGA+TGG + chr1_1:80716872-80716891 Msa0047640:intron 30.0%
! ATTTCACTCAGATGGTATTT+TGG + chr1_1:80716880-80716899 Msa0047640:intron 30.0%
! TTTCACTCAGATGGTATTTT+GGG + chr1_1:80716881-80716900 Msa0047640:intron 30.0%
! ATGGTTTTTGTGATGTATTC+AGG + chr1_1:80716915-80716934 Msa0047640:intron 30.0%
! TGGTTTTTGTGATGTATTCA+GGG + chr1_1:80716916-80716935 Msa0047640:intron 30.0%
AACAATTCCAAGTTAAGTGA+AGG + chr1_1:80717009-80717028 Msa0047640:CDS 30.0%
CAAATATCCTTCACTTAACT+TGG - chr1_1:80717019-80717038 None:intergenic 30.0%
! TTATATTTCAGAGCATTAGC+TGG - chr1_1:80717164-80717183 None:intergenic 30.0%
CGAAACTCGTTAATTATACT+TGG - chr1_1:80717242-80717261 None:intergenic 30.0%
TAATTAACGAGTTTCGGTTT+AGG + chr1_1:80717246-80717265 Msa0047640:intron 30.0%
GGTCAATAAAAATTGAACTC+GGG - chr1_1:80717290-80717309 None:intergenic 30.0%
! TCTGGTAATCTAAAGTTCAT+CGG - chr1_1:80717330-80717349 None:intergenic 30.0%
AAGACCAAAAAAGGATAGAT+AGG + chr1_1:80717380-80717399 Msa0047640:intron 30.0%
!!! TTCACCTATCTATCCTTTTT+TGG - chr1_1:80717387-80717406 None:intergenic 30.0%
!!! GTATGGATGTATTAGTTTTG+TGG + chr1_1:80717424-80717443 Msa0047640:intron 30.0%
ATGCATAACATGAATCAACT+GGG - chr1_1:80717511-80717530 None:intergenic 30.0%
AATGCATAACATGAATCAAC+TGG - chr1_1:80717512-80717531 None:intergenic 30.0%
TAAAATAAGCAGAAACAGAC+AGG + chr1_1:80717658-80717677 Msa0047640:intron 30.0%
AAAATAAGCAGAAACAGACA+GGG + chr1_1:80717659-80717678 Msa0047640:intron 30.0%
TAACGATCAAATGTGTGAAA+TGG - chr1_1:80718021-80718040 None:intergenic 30.0%
!!! TGTTGTTTTCTTTCCTTGAT+TGG + chr1_1:80718223-80718242 Msa0047640:intron 30.0%
GAGTCTGCAAATTTAATCTA+TGG + chr1_1:80718431-80718450 Msa0047640:intron 30.0%
ATATAGTATAGCACTTATGG+TGG - chr1_1:80718761-80718780 None:intergenic 30.0%
TGGATATAGTATAGCACTTA+TGG - chr1_1:80718764-80718783 None:intergenic 30.0%
AGTGCTATACTATATCCAAA+AGG + chr1_1:80718766-80718785 Msa0047640:intron 30.0%
CAATTAATTGGGATGTATTG+AGG + chr1_1:80718862-80718881 Msa0047640:intron 30.0%
CAATTCAGAGCAAAATATGA+GGG - chr1_1:80719168-80719187 None:intergenic 30.0%
ACAATTCAGAGCAAAATATG+AGG - chr1_1:80719169-80719188 None:intergenic 30.0%
!!! GCTCTGAATTGTTTTTTCTT+AGG + chr1_1:80719177-80719196 Msa0047640:intron 30.0%
! GTTAATGCATTTGTTAATGC+CGG + chr1_1:80719274-80719293 Msa0047640:CDS 30.0%
!! CTTTTTAAAAACAAGGAGCA+TGG + chr1_1:80719462-80719481 Msa0047640:CDS 30.0%
GTTATCCCTTGTATTATAAC+AGG + chr1_1:80719580-80719599 Msa0047640:intron 30.0%
CATACCCTGTTATAATACAA+GGG - chr1_1:80719588-80719607 None:intergenic 30.0%
TCATACCCTGTTATAATACA+AGG - chr1_1:80719589-80719608 None:intergenic 30.0%
! AACAGGGTATGATTTTACTA+TGG + chr1_1:80719597-80719616 Msa0047640:intron 30.0%
! ACAGGGTATGATTTTACTAT+GGG + chr1_1:80719598-80719617 Msa0047640:intron 30.0%
TGACATGGTTATCATTACTA+TGG - chr1_1:80719661-80719680 None:intergenic 30.0%
GTACATGTCATATACAGAAA+AGG - chr1_1:80719766-80719785 None:intergenic 30.0%
ACTAGAATTGGTGCAATTAT+GGG + chr1_1:80719873-80719892 Msa0047640:CDS 30.0%
!! AATTTTTGAAAACGGTTAGG+AGG + chr1_1:80720363-80720382 Msa0047640:intron 30.0%
!! ATTTTTGAAAACGGTTAGGA+GGG + chr1_1:80720364-80720383 Msa0047640:intron 30.0%
ATAGTACTAACTCCATATTG+TGG + chr1_1:80720422-80720441 Msa0047640:intron 30.0%
TGTTGTTACATACCACAATA+TGG - chr1_1:80720437-80720456 None:intergenic 30.0%
ATATTGTGGTATGTAACAAC+AGG + chr1_1:80720436-80720455 Msa0047640:intron 30.0%
TTAGAACATCTTCTACAGTA+TGG + chr1_1:80720786-80720805 Msa0047640:CDS 30.0%
! TCTGTCATATTTTCAGAACA+AGG - chr1_1:80720941-80720960 None:intergenic 30.0%
!! TGTTCTGAAAATATGACAGA+TGG + chr1_1:80720941-80720960 Msa0047640:intron 30.0%
! TGTTAACCCTTTATTTGATC+AGG + chr1_1:80721018-80721037 Msa0047640:intron 30.0%
CATTGACCTGATCAAATAAA+GGG - chr1_1:80721027-80721046 None:intergenic 30.0%
ACATTGACCTGATCAAATAA+AGG - chr1_1:80721028-80721047 None:intergenic 30.0%
ATTTGATCAGGTCAATGTTA+TGG + chr1_1:80721030-80721049 Msa0047640:intron 30.0%
AATCATTGTTGTCTATGGTT+TGG + chr1_1:80721121-80721140 Msa0047640:intron 30.0%
! AAACACATTTTGTATGCTAC+AGG + chr1_1:80721161-80721180 Msa0047640:intron 30.0%
TCTTTCAAGCTATTACTACA+AGG + chr1_1:80721254-80721273 Msa0047640:CDS 30.0%
TAACTAAGACAAAAGCAGAT+GGG - chr1_1:80721485-80721504 None:intergenic 30.0%
TTAACTAAGACAAAAGCAGA+TGG - chr1_1:80721486-80721505 None:intergenic 30.0%
! ACGTTCCTTTCAATTTTTAC+AGG + chr1_1:80721586-80721605 Msa0047640:intron 30.0%
ACACAATAGCTTTCATATCA+AGG - chr1_1:80721650-80721669 None:intergenic 30.0%
TGATATGAAAGCTATTGTGT+TGG + chr1_1:80721650-80721669 Msa0047640:CDS 30.0%
GATATGAAAGCTATTGTGTT+GGG + chr1_1:80721651-80721670 Msa0047640:CDS 30.0%
!! TTAAGACTAGCTTCAAATAG+GGG - chr1_1:80721758-80721777 None:intergenic 30.0%
!!! GCTTGTTTTAAAGTATCACA+AGG - chr1_1:80721993-80722012 None:intergenic 30.0%
TAAAGGACAATCCAGATTAT+AGG + chr1_1:80722100-80722119 Msa0047640:CDS 30.0%
AAAGGACAATCCAGATTATA+GGG + chr1_1:80722101-80722120 Msa0047640:CDS 30.0%
AACTAAATACTGTTCAGACA+CGG - chr1_1:80722165-80722184 None:intergenic 30.0%
!! GTGTCGATTAATTTGAAAGA+TGG + chr1_1:80722309-80722328 Msa0047640:three_prime_UTR 30.0%
AAAGGAAAAAAGTGGGACTT+TGG - chr1_1:80713232-80713251 None:intergenic 35.0%
TTTCACGCTAAATCGAACTT+AGG + chr1_1:80713325-80713344 Msa0047640:five_prime_UTR 35.0%
TTCACGCTAAATCGAACTTA+GGG + chr1_1:80713326-80713345 Msa0047640:five_prime_UTR 35.0%
TGAGTGAAAATTCGAATCGA+GGG - chr1_1:80713485-80713504 None:intergenic 35.0%
TTGAGTGAAAATTCGAATCG+AGG - chr1_1:80713486-80713505 None:intergenic 35.0%
GGCATATTATGAAACTATGG+CGG + chr1_1:80713880-80713899 Msa0047640:CDS 35.0%
!! TTCGTCATTGCAGAAGTATT+TGG + chr1_1:80713995-80714014 Msa0047640:intron 35.0%
GGCTGACATATTATCAGTAT+TGG + chr1_1:80714016-80714035 Msa0047640:CDS 35.0%
! AGTCTCAAATACCGATTACT+AGG + chr1_1:80714194-80714213 Msa0047640:CDS 35.0%
GTGATTCGATTGTTTACAAC+AGG - chr1_1:80714319-80714338 None:intergenic 35.0%
! AAGGAAGGGTTGATTGAAAA+AGG + chr1_1:80714361-80714380 Msa0047640:intron 35.0%
TCAAGAATATGCAAAACGAC+AGG + chr1_1:80714454-80714473 Msa0047640:CDS 35.0%
AATATGCAAAACGACAGGTT+AGG + chr1_1:80714459-80714478 Msa0047640:intron 35.0%
TACAGAAAATGCTGTAGTGA+GGG - chr1_1:80714504-80714523 None:intergenic 35.0%
ATACAGAAAATGCTGTAGTG+AGG - chr1_1:80714505-80714524 None:intergenic 35.0%
AGTTCCATGAGATCATCAAT+TGG - chr1_1:80714624-80714643 None:intergenic 35.0%
AATAGTTGCCTTTCACATGA+AGG + chr1_1:80714653-80714672 Msa0047640:intron 35.0%
GTTCACTTTCTGAATAGTTC+GGG - chr1_1:80714860-80714879 None:intergenic 35.0%
! TTGAACTTTTGCATCTTGTG+TGG + chr1_1:80715085-80715104 Msa0047640:intron 35.0%
GGCCAAGAAATTCAAGAAAT+AGG - chr1_1:80715144-80715163 None:intergenic 35.0%
TTAATATAAAGGCTAGGCTC+AGG - chr1_1:80715527-80715546 None:intergenic 35.0%
! GCCTAGCCTTTATATTAAAC+GGG + chr1_1:80715529-80715548 Msa0047640:intron 35.0%
!! AAGGTCATTTGTTATCATCC+TGG + chr1_1:80715690-80715709 Msa0047640:intron 35.0%
! TTGTTAGCTTAGCTGATACT+TGG + chr1_1:80715760-80715779 Msa0047640:intron 35.0%
GCAGCAAGAACAGTATTAAT+AGG - chr1_1:80715787-80715806 None:intergenic 35.0%
!! TATACAAGTGTCGAAGTCAT+TGG + chr1_1:80715816-80715835 Msa0047640:intron 35.0%
!! ATACAAGTGTCGAAGTCATT+GGG + chr1_1:80715817-80715836 Msa0047640:intron 35.0%
! GAGTCTTGTATCTCAACAAT+AGG - chr1_1:80715944-80715963 None:intergenic 35.0%
! GATTAGTTCCCTACTCAATT+AGG - chr1_1:80715972-80715991 None:intergenic 35.0%
!! ATGGAGTTTGACTTGCAATT+GGG + chr1_1:80716190-80716209 Msa0047640:intron 35.0%
GGTTCATTGGATATAGTCAT+TGG + chr1_1:80716227-80716246 Msa0047640:intron 35.0%
AACTAAAAAAATCCAGAGCC+AGG - chr1_1:80716253-80716272 None:intergenic 35.0%
ACCAGATGATATGCTAGTAT+TGG + chr1_1:80716384-80716403 Msa0047640:CDS 35.0%
TCCAATACTAGCATATCATC+TGG - chr1_1:80716388-80716407 None:intergenic 35.0%
AATGCAATTTGCAGTGCATT+TGG - chr1_1:80716448-80716467 None:intergenic 35.0%
ACTGCAAATTGCATTGTTCA+TGG + chr1_1:80716453-80716472 Msa0047640:CDS 35.0%
AAGTGTTCCTTAAAAGCTTG+TGG + chr1_1:80716573-80716592 Msa0047640:intron 35.0%
! GGTTTGAAACTAACTAGTTG+CGG + chr1_1:80716594-80716613 Msa0047640:intron 35.0%
ATTCTGTGTTAGTACTTGTG+TGG + chr1_1:80716715-80716734 Msa0047640:intron 35.0%
ACAGTTACATCCATTATCAC+AGG - chr1_1:80716769-80716788 None:intergenic 35.0%
TATATATCTTCAGGGGACTT+AGG - chr1_1:80717072-80717091 None:intergenic 35.0%
CACCTTGTATATATCTTCAG+GGG - chr1_1:80717079-80717098 None:intergenic 35.0%
GCACCTTGTATATATCTTCA+GGG - chr1_1:80717080-80717099 None:intergenic 35.0%
TGCACCTTGTATATATCTTC+AGG - chr1_1:80717081-80717100 None:intergenic 35.0%
ATTGATGAAAGGAAACCAAG+TGG + chr1_1:80717210-80717229 Msa0047640:intron 35.0%
! TAATCTAAAGTTCATCGGGT+AGG - chr1_1:80717325-80717344 None:intergenic 35.0%
! CTGGTAATCTAAAGTTCATC+GGG - chr1_1:80717329-80717348 None:intergenic 35.0%
! TTGATGATTGCATGTGATTG+AGG + chr1_1:80717484-80717503 Msa0047640:intron 35.0%
AGATAGCCTAGATCAATTAG+TGG + chr1_1:80717919-80717938 Msa0047640:intron 35.0%
!!! GACATGTATTTTGAAACGGA+AGG - chr1_1:80717990-80718009 None:intergenic 35.0%
!! CAGCGACATGTATTTTGAAA+CGG - chr1_1:80717994-80718013 None:intergenic 35.0%
!! ATGCGACATGCATTTTGAAA+CGG + chr1_1:80718120-80718139 Msa0047640:intron 35.0%
CTCTACAAATAATTAGAGCC+TGG - chr1_1:80718273-80718292 None:intergenic 35.0%
! CAGGCTCTAATTATTTGTAG+AGG + chr1_1:80718271-80718290 Msa0047640:intron 35.0%
!! AGTTGTTGCTTTAGCAATGA+GGG - chr1_1:80718299-80718318 None:intergenic 35.0%
CAAGAAACATCCTGTTTAAC+AGG - chr1_1:80718334-80718353 None:intergenic 35.0%
!! TGTAACACACTGGTTTACAT+TGG + chr1_1:80718352-80718371 Msa0047640:intron 35.0%
TAAATTTGCAGACTCTACAC+AGG - chr1_1:80718426-80718445 None:intergenic 35.0%
!! ATTTTCCCGTATCGACATAT+CGG - chr1_1:80718508-80718527 None:intergenic 35.0%
! AGCACTAACAATGTTCCTTT+TGG - chr1_1:80718784-80718803 None:intergenic 35.0%
TATCGGTGCAGGATAATTAT+CGG + chr1_1:80718889-80718908 Msa0047640:intron 35.0%
GATACTTTCCTGATACGTAT+CGG + chr1_1:80718911-80718930 Msa0047640:intron 35.0%
ATACTTTCCTGATACGTATC+GGG + chr1_1:80718912-80718931 Msa0047640:intron 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG + chr1_1:80719039-80719058 Msa0047640:intron 35.0%
CATTAACAAAAGTAGCAGCA+AGG - chr1_1:80719261-80719280 None:intergenic 35.0%
CACAACAGTAATTGAATGGA+AGG - chr1_1:80719382-80719401 None:intergenic 35.0%
AATGATAACCATGTCATTGC+TGG + chr1_1:80719665-80719684 Msa0047640:CDS 35.0%
TTTGATTCCATTGTAGGCAA+TGG + chr1_1:80719812-80719831 Msa0047640:intron 35.0%
GAAGATAGTTCGACTAGAAT+TGG + chr1_1:80719861-80719880 Msa0047640:CDS 35.0%
GACTAGAATTGGTGCAATTA+TGG + chr1_1:80719872-80719891 Msa0047640:CDS 35.0%
ATTGGTGCAATTATGGGATT+AGG + chr1_1:80719879-80719898 Msa0047640:CDS 35.0%
! ATCTCAACAAGGTGTTACAA+GGG - chr1_1:80719950-80719969 None:intergenic 35.0%
CTTTCAGTTACGATACAAGT+TGG + chr1_1:80720017-80720036 Msa0047640:intron 35.0%
GAAGCAGGTATTTACTTGTT+TGG + chr1_1:80720239-80720258 Msa0047640:intron 35.0%
!! TTTTTGAAAACGGTTAGGAG+GGG + chr1_1:80720365-80720384 Msa0047640:intron 35.0%
ATATGGAGTTAGTACTATGC+TGG - chr1_1:80720420-80720439 None:intergenic 35.0%
! ATGCAGGTGCAAAATCTTTT+GGG + chr1_1:80720651-80720670 Msa0047640:intron 35.0%
TGTTCACAACATCTTGACAA+AGG + chr1_1:80720678-80720697 Msa0047640:CDS 35.0%
!! TGAAGAATTAGGTGTTGAGA+TGG + chr1_1:80720752-80720771 Msa0047640:CDS 35.0%
GTAGAAGATGTTCTAACGAT+CGG - chr1_1:80720782-80720801 None:intergenic 35.0%
CAACTTCTGAATCAGTATCA+TGG - chr1_1:80721075-80721094 None:intergenic 35.0%
!! TACTGATTCAGAAGTTGCAA+TGG + chr1_1:80721078-80721097 Msa0047640:CDS 35.0%
ACATACACAAAATAGAAGGC+TGG - chr1_1:80721283-80721302 None:intergenic 35.0%
TCAGTGAACATTGTAACAAG+CGG - chr1_1:80721336-80721355 None:intergenic 35.0%
! GATTTTCTTTTCTACGCTAC+AGG + chr1_1:80721354-80721373 Msa0047640:intron 35.0%
AAAAGCAGATGGGCAAAATA+AGG - chr1_1:80721475-80721494 None:intergenic 35.0%
CAGATGCAAACTAATTGAGT+CGG + chr1_1:80721514-80721533 Msa0047640:intron 35.0%
GCTGTCCTGTAAAAATTGAA+AGG - chr1_1:80721594-80721613 None:intergenic 35.0%
! ACCTTCAAGAATTGGTGATA+GGG - chr1_1:80722070-80722089 None:intergenic 35.0%
! AACCTTCAAGAATTGGTGAT+AGG - chr1_1:80722071-80722090 None:intergenic 35.0%
ATTGAGGTTTCTTGTTGCAG+AGG - chr1_1:80713197-80713216 None:intergenic 40.0%
!!! GCTCTCGATCTTCTTTTTTG+CGG - chr1_1:80713440-80713459 None:intergenic 40.0%
GAGTGAAAATTCGAATCGAG+GGG - chr1_1:80713484-80713503 None:intergenic 40.0%
TCATGGAGCTTGTAGAAGTA+CGG - chr1_1:80713808-80713827 None:intergenic 40.0%
AAGTTTCTACGGCCACATTA+CGG + chr1_1:80713848-80713867 Msa0047640:CDS 40.0%
! TATGGCGGAATCAGAGTTAA+AGG + chr1_1:80713895-80713914 Msa0047640:CDS 40.0%
! ATCGGTATTTGAGACTTTCC+TGG - chr1_1:80714190-80714209 None:intergenic 40.0%
! ATACCGATTACTAGGTTCAG+AGG + chr1_1:80714202-80714221 Msa0047640:CDS 40.0%
! TACCGATTACTAGGTTCAGA+GGG + chr1_1:80714203-80714222 Msa0047640:CDS 40.0%
!! AGAGGGAGATATTGGTTCAT+GGG + chr1_1:80714220-80714239 Msa0047640:CDS 40.0%
! TATGGTGTCAGAAATTTGGC+TGG + chr1_1:80714422-80714441 Msa0047640:intron 40.0%
! TGTGCATTGATAGAGTGAAG+AGG + chr1_1:80714596-80714615 Msa0047640:intron 40.0%
ATCAAAAGATCAACAGCCTC+TGG - chr1_1:80714803-80714822 None:intergenic 40.0%
! AGAGGCTGTTGATCTTTTGA+TGG + chr1_1:80714802-80714821 Msa0047640:CDS 40.0%
GTTCGGGAAAAACCAAAAGA+AGG - chr1_1:80714844-80714863 None:intergenic 40.0%
TGTATCTGACAAGTTCAGCT+AGG + chr1_1:80714977-80714996 Msa0047640:CDS 40.0%
!! GCCTAGTCTAGCCTTTTTAA+AGG + chr1_1:80715223-80715242 Msa0047640:intron 40.0%
! GCCTTTAAAAAGGCTAGACT+AGG - chr1_1:80715227-80715246 None:intergenic 40.0%
! GCTTCACTAGGCCTTTAAAA+AGG - chr1_1:80715237-80715256 None:intergenic 40.0%
!! GTAAGCATATTGGTGTTGCA+AGG - chr1_1:80715285-80715304 None:intergenic 40.0%
AGTAGCATGTTGGTGTACTT+GGG - chr1_1:80715335-80715354 None:intergenic 40.0%
TAGTAGCATGTTGGTGTACT+TGG - chr1_1:80715336-80715355 None:intergenic 40.0%
GAAGGCTTAATCACACCAAT+AGG + chr1_1:80715372-80715391 Msa0047640:intron 40.0%
CTATTTAGTAGCAGGCCTAT+TGG - chr1_1:80715390-80715409 None:intergenic 40.0%
AGCTAAATCATACGAAGGCA+TGG + chr1_1:80715408-80715427 Msa0047640:intron 40.0%
! GCTAAATCATACGAAGGCAT+GGG + chr1_1:80715409-80715428 Msa0047640:intron 40.0%
AGTCCATGCTAAGGCTTATA+AGG - chr1_1:80715477-80715496 None:intergenic 40.0%
GCCCGTTTAATATAAAGGCT+AGG - chr1_1:80715533-80715552 None:intergenic 40.0%
AGCCTTTATATTAAACGGGC+CGG + chr1_1:80715533-80715552 Msa0047640:intron 40.0%
! TTTTAAATAGGCCAGGCCAT+AGG + chr1_1:80715567-80715586 Msa0047640:intron 40.0%
!!! CTTTTTTAAAGCCTATGGCC+TGG - chr1_1:80715581-80715600 None:intergenic 40.0%
!! GCTTTAAAAAAGCCTTAGCC+TGG + chr1_1:80715589-80715608 Msa0047640:intron 40.0%
!! TGCATCTCTTTTTAGTCTCC+AGG - chr1_1:80715711-80715730 None:intergenic 40.0%
ACTCCTAGTCCTAATTGAGT+AGG + chr1_1:80715960-80715979 Msa0047640:intron 40.0%
CTCCTAGTCCTAATTGAGTA+GGG + chr1_1:80715961-80715980 Msa0047640:intron 40.0%
TTCCCTACTCAATTAGGACT+AGG - chr1_1:80715966-80715985 None:intergenic 40.0%
AACCAAGTGACAAGAACCTA+AGG + chr1_1:80716000-80716019 Msa0047640:intron 40.0%
ATCCTTAGGTTCTTGTCACT+TGG - chr1_1:80716005-80716024 None:intergenic 40.0%
TATTTGTGCCTGTGACAGAA+TGG + chr1_1:80716059-80716078 Msa0047640:intron 40.0%
! TGTTTCTTTAGTTGCTGGCT+TGG + chr1_1:80716094-80716113 Msa0047640:intron 40.0%
!! GATGGAGTTTGACTTGCAAT+TGG + chr1_1:80716189-80716208 Msa0047640:intron 40.0%
!! TGGAGTTTGACTTGCAATTG+GGG + chr1_1:80716191-80716210 Msa0047640:intron 40.0%
ATTGGATATAGTCATTGGCC+TGG + chr1_1:80716232-80716251 Msa0047640:intron 40.0%
ATTGTTCATGGATAACCTGC+TGG + chr1_1:80716465-80716484 Msa0047640:CDS 40.0%
CAAGTACTAACACAGAATCC+AGG - chr1_1:80716713-80716732 None:intergenic 40.0%
! CTTGTGTGGCGAATAGTTTT+TGG + chr1_1:80716729-80716748 Msa0047640:intron 40.0%
AGTTTCCTTGCCTGTGATAA+TGG + chr1_1:80716756-80716775 Msa0047640:intron 40.0%
TACATCCATTATCACAGGCA+AGG - chr1_1:80716764-80716783 None:intergenic 40.0%
!!! ATTTTGGGACTCTCTCTTGA+TGG + chr1_1:80716896-80716915 Msa0047640:intron 40.0%
!! AATCACTTTTGAGCTTGACG+AGG + chr1_1:80716939-80716958 Msa0047640:CDS 40.0%
! TTTTGAGCTTGACGAGGAAA+TGG + chr1_1:80716945-80716964 Msa0047640:CDS 40.0%
CTCCATGACTTCAATATCAC+GGG - chr1_1:80717049-80717068 None:intergenic 40.0%
GCTCCATGACTTCAATATCA+CGG - chr1_1:80717050-80717069 None:intergenic 40.0%
GTCCCCTGAAGATATATACA+AGG + chr1_1:80717074-80717093 Msa0047640:CDS 40.0%
TATGGGAGTCATATGTAGTC+AGG - chr1_1:80717141-80717160 None:intergenic 40.0%
! TTCAGAGCATTAGCTGGTAT+GGG - chr1_1:80717158-80717177 None:intergenic 40.0%
! TTTCAGAGCATTAGCTGGTA+TGG - chr1_1:80717159-80717178 None:intergenic 40.0%
TATACTTGGACTCAACCACT+TGG - chr1_1:80717228-80717247 None:intergenic 40.0%
TCGGTTTAGGTCGAATTGAA+AGG + chr1_1:80717259-80717278 Msa0047640:intron 40.0%
CGGTTTAGGTCGAATTGAAA+GGG + chr1_1:80717260-80717279 Msa0047640:intron 40.0%
TCGGGTAGGTAATTAAAGTC+AGG - chr1_1:80717311-80717330 None:intergenic 40.0%
TGGAGGGTTAAGACCAAAAA+AGG + chr1_1:80717371-80717390 Msa0047640:intron 40.0%
! TGGACCCATTTGTTGCTAAA+TGG + chr1_1:80717549-80717568 Msa0047640:intron 40.0%
!! GTGATGGATGTCAATTTCAG+TGG - chr1_1:80717753-80717772 None:intergenic 40.0%
!!! GACATGCATTTTGAAACGGA+GGG + chr1_1:80718124-80718143 Msa0047640:intron 40.0%
!! CAGTTGTTGCTTTAGCAATG+AGG - chr1_1:80718300-80718319 None:intergenic 40.0%
GGATGTTTCTTGTAACACAC+TGG + chr1_1:80718342-80718361 Msa0047640:intron 40.0%
TCCATATCGTATCTCGTATC+CGG - chr1_1:80718473-80718492 None:intergenic 40.0%
AAATCAAGATACGATACGGC+TGG + chr1_1:80718533-80718552 Msa0047640:intron 40.0%
AATCAAGATACGATACGGCT+GGG + chr1_1:80718534-80718553 Msa0047640:intron 40.0%
! GCACTTATGGTGGTCTTTTT+GGG - chr1_1:80718751-80718770 None:intergenic 40.0%
! AGCACTTATGGTGGTCTTTT+TGG - chr1_1:80718752-80718771 None:intergenic 40.0%
TAATTGGGATGTATTGAGGC+AGG + chr1_1:80718866-80718885 Msa0047640:intron 40.0%
! TGATACGTATCGGGAAGTAT+CGG + chr1_1:80718921-80718940 Msa0047640:intron 40.0%
GATACTCTCCTGATACGTAT+CGG + chr1_1:80718980-80718999 Msa0047640:intron 40.0%
ATACTCTCCTGATACGTATC+GGG + chr1_1:80718981-80719000 Msa0047640:intron 40.0%
GAAGCTCCGATACTTCAAAA+TGG - chr1_1:80719048-80719067 None:intergenic 40.0%
!! TTGAAGTATCGGAGCTTCAT+AGG + chr1_1:80719050-80719069 Msa0047640:intron 40.0%
TCTTAGGCACATTTGCTTGA+TGG + chr1_1:80719193-80719212 Msa0047640:intron 40.0%
! GCATTTGTTAATGCCGGATT+TGG + chr1_1:80719280-80719299 Msa0047640:CDS 40.0%
TCATTGTACCTGACCAAATC+CGG - chr1_1:80719296-80719315 None:intergenic 40.0%
CCTGCACAACAGTAATTGAA+TGG - chr1_1:80719386-80719405 None:intergenic 40.0%
CCATTCAATTACTGTTGTGC+AGG + chr1_1:80719383-80719402 Msa0047640:intron 40.0%
GCATCAGATTCTTCAAGTAG+TGG + chr1_1:80719423-80719442 Msa0047640:CDS 40.0%
TCTTCAAGTAGTGGTTCTTC+TGG + chr1_1:80719432-80719451 Msa0047640:CDS 40.0%
!! TTACTATGGGATGTTGACTC+TGG + chr1_1:80719611-80719630 Msa0047640:CDS 40.0%
GGATTAGGAATTGCATATGC+TGG + chr1_1:80719894-80719913 Msa0047640:CDS 40.0%
! CATCTCAACAAGGTGTTACA+AGG - chr1_1:80719951-80719970 None:intergenic 40.0%
!! GCTTTAGGATCACTCAGAAT+AGG - chr1_1:80720045-80720064 None:intergenic 40.0%
! GCCTTGGTCTTCTTTATCTT+GGG + chr1_1:80720217-80720236 Msa0047640:CDS 40.0%
TCCCAAGATAAAGAAGACCA+AGG - chr1_1:80720221-80720240 None:intergenic 40.0%
TCTTCTTTATCTTGGGAAGC+AGG + chr1_1:80720224-80720243 Msa0047640:CDS 40.0%
TGTCAGTAATGCAACCACAA+TGG - chr1_1:80720301-80720320 None:intergenic 40.0%
!!! TTAGGAGGGGTTTTGCTATT+AGG + chr1_1:80720378-80720397 Msa0047640:intron 40.0%
!!! AGGGGTTTTGCTATTAGGTT+GGG + chr1_1:80720383-80720402 Msa0047640:intron 40.0%
!! GTAACAACAGGAAAGTGTTG+AGG + chr1_1:80720448-80720467 Msa0047640:intron 40.0%
! TGCGGCAGAAATCTCTATTT+TGG - chr1_1:80720597-80720616 None:intergenic 40.0%
! CATGCAGGTGCAAAATCTTT+TGG + chr1_1:80720650-80720669 Msa0047640:intron 40.0%
TTGCTACCATAGCAATTCCA+AGG - chr1_1:80720728-80720747 None:intergenic 40.0%
TGGAATTGCTATGGTAGCAA+TGG + chr1_1:80720728-80720747 Msa0047640:CDS 40.0%
GTAGCAATGGCTGAAGAATT+AGG + chr1_1:80720741-80720760 Msa0047640:CDS 40.0%
GCTGTGTATATCAAACCCAA+AGG + chr1_1:80720851-80720870 Msa0047640:CDS 40.0%
ATCATGGCTAAGTCTGCTTA+AGG - chr1_1:80721059-80721078 None:intergenic 40.0%
GTTATCTCCTTGGGTCTAAT+AGG + chr1_1:80721189-80721208 Msa0047640:CDS 40.0%
ACAAACAATGCTCGAATTGC+CGG + chr1_1:80721219-80721238 Msa0047640:CDS 40.0%
TCCCAAATGTACAAGACCTT+GGG - chr1_1:80721389-80721408 None:intergenic 40.0%
TTCCCAAATGTACAAGACCT+TGG - chr1_1:80721390-80721409 None:intergenic 40.0%
! AGGTCTTGTACATTTGGGAA+AGG + chr1_1:80721390-80721409 Msa0047640:CDS 40.0%
! GGTCTTGTACATTTGGGAAA+GGG + chr1_1:80721391-80721410 Msa0047640:CDS 40.0%
AAGACACGGTCAGAATGATA+AGG - chr1_1:80721433-80721452 None:intergenic 40.0%
CTTACGGTGATAGTAAGACA+CGG - chr1_1:80721447-80721466 None:intergenic 40.0%
! TGTTCTCTACTTCCTCGTTT+TGG + chr1_1:80721686-80721705 Msa0047640:CDS 40.0%
! ACTAGCTTCAAATAGGGGAA+GGG - chr1_1:80721753-80721772 None:intergenic 40.0%
! CCTTCAAGAATTGGTGATAG+GGG - chr1_1:80722069-80722088 None:intergenic 40.0%
CATCACTCTTCCCTATAATC+TGG - chr1_1:80722114-80722133 None:intergenic 40.0%
AAATTCGAATCGAGGGGCTT+TGG - chr1_1:80713478-80713497 None:intergenic 45.0%
CGTGCAGTCAGATGAAGATT+TGG + chr1_1:80713571-80713590 Msa0047640:intron 45.0%
!! TTTGGCTTTGAAGCAACAGC+TGG + chr1_1:80713589-80713608 Msa0047640:CDS 45.0%
AGCTGGAGTTGTATGTTGAG+AGG + chr1_1:80713606-80713625 Msa0047640:CDS 45.0%
GCTGGAGTTGTATGTTGAGA+GGG + chr1_1:80713607-80713626 Msa0047640:CDS 45.0%
GTTGTATGTTGAGAGGGTTC+AGG + chr1_1:80713613-80713632 Msa0047640:CDS 45.0%
! AGGTTGCTCTTGAAAGCATG+AGG + chr1_1:80713657-80713676 Msa0047640:CDS 45.0%
CGTAGAAACTTCAGTGGCTT+GGG - chr1_1:80713839-80713858 None:intergenic 45.0%
CCAAGCCACTGAAGTTTCTA+CGG + chr1_1:80713837-80713856 Msa0047640:CDS 45.0%
GCCACATTACGGTACTCTTA+AGG + chr1_1:80713859-80713878 Msa0047640:CDS 45.0%
!! GCCTTAAGAGTACCGTAATG+TGG - chr1_1:80713863-80713882 None:intergenic 45.0%
TCCCTCAGCAGACATTGTAA+GGG - chr1_1:80714042-80714061 None:intergenic 45.0%
CTCCCTCTGAACCTAGTAAT+CGG - chr1_1:80714208-80714227 None:intergenic 45.0%
CTAGGTTCAGAGGGAGATAT+TGG + chr1_1:80714212-80714231 Msa0047640:CDS 45.0%
!! CAGAGGGAGATATTGGTTCA+TGG + chr1_1:80714219-80714238 Msa0047640:CDS 45.0%
!! GAGGGAGATATTGGTTCATG+GGG + chr1_1:80714221-80714240 Msa0047640:CDS 45.0%
CATGGGGACATGAGTATGTT+AGG + chr1_1:80714237-80714256 Msa0047640:CDS 45.0%
! GGCTGTTGATCTTTTGATGG+AGG + chr1_1:80714805-80714824 Msa0047640:CDS 45.0%
TCAGGTAATAGGCAAGGCTT+AGG - chr1_1:80715185-80715204 None:intergenic 45.0%
ATGAGCCTGTGTCAGGTAAT+AGG - chr1_1:80715196-80715215 None:intergenic 45.0%
CTTAGAAATGAGCCTGTGTC+AGG - chr1_1:80715203-80715222 None:intergenic 45.0%
CTGACACAGGCTCATTTCTA+AGG + chr1_1:80715201-80715220 Msa0047640:intron 45.0%
ATAGGCTTTCAGGCTTCACT+AGG - chr1_1:80715249-80715268 None:intergenic 45.0%
TCGGTGTGAAATAGGCTTTC+AGG - chr1_1:80715259-80715278 None:intergenic 45.0%
GAAAGCCTATTTCACACCGA+AGG + chr1_1:80715259-80715278 Msa0047640:intron 45.0%
!! TATTGGTGTTGCAAGGCCTT+CGG - chr1_1:80715278-80715297 None:intergenic 45.0%
TAATAGATAGGCCGGCCTAA+CGG + chr1_1:80715450-80715469 Msa0047640:intron 45.0%
TAAGGCTTATAAGGCCCGTT+AGG - chr1_1:80715468-80715487 None:intergenic 45.0%
GCCTTTATATTAAACGGGCC+GGG + chr1_1:80715534-80715553 Msa0047640:intron 45.0%
ACCCGGCCCGTTTAATATAA+AGG - chr1_1:80715538-80715557 None:intergenic 45.0%
! ATTTAAAACCGAGCTCGACC+CGG - chr1_1:80715555-80715574 None:intergenic 45.0%
!!! GGTCGAGCTCGGTTTTAAAT+AGG + chr1_1:80715555-80715574 Msa0047640:intron 45.0%
!!! AGCTCGGTTTTAAATAGGCC+AGG + chr1_1:80715560-80715579 Msa0047640:intron 45.0%
ACACACACACACTCTCTTAG+GGG - chr1_1:80715625-80715644 None:intergenic 45.0%
CACACACACACACTCTCTTA+GGG - chr1_1:80715626-80715645 None:intergenic 45.0%
ACACACACACACACTCTCTT+AGG - chr1_1:80715627-80715646 None:intergenic 45.0%
!! ATGCAGTGATTCGGTGCTTT+AGG + chr1_1:80715726-80715745 Msa0047640:intron 45.0%
GTTTCAGTCCATTCTGTCAC+AGG - chr1_1:80716070-80716089 None:intergenic 45.0%
ACTAGCATATCATCTGGTCC+AGG - chr1_1:80716382-80716401 None:intergenic 45.0%
CACAGAATCCAGGACTTACA+TGG - chr1_1:80716703-80716722 None:intergenic 45.0%
!!! TGTGGCGAATAGTTTTTGGC+TGG + chr1_1:80716733-80716752 Msa0047640:intron 45.0%
TGCCCGTGATATTGAAGTCA+TGG + chr1_1:80717044-80717063 Msa0047640:CDS 45.0%
TAAGCAGAAACAGACAGGGT+TGG + chr1_1:80717663-80717682 Msa0047640:intron 45.0%
!!! CGACATGCATTTTGAAACGG+AGG + chr1_1:80718123-80718142 Msa0047640:intron 45.0%
CTAAAGCAACAACTGTCTCG+AGG + chr1_1:80718305-80718324 Msa0047640:intron 45.0%
AACTTTGTGCAACCTGCTGA+AGG + chr1_1:80718398-80718417 Msa0047640:intron 45.0%
CCATATCGTATCTCGTATCC+GGG - chr1_1:80718472-80718491 None:intergenic 45.0%
! ACTGCACCGATATGTCGATA+CGG + chr1_1:80718499-80718518 Msa0047640:intron 45.0%
GGATGTATTGAGGCAGGTAT+CGG + chr1_1:80718872-80718891 Msa0047640:intron 45.0%
GATACTTCCCGATACGTATC+AGG - chr1_1:80718922-80718941 None:intergenic 45.0%
ATACTTGCCCGATACGTATC+AGG - chr1_1:80718991-80719010 None:intergenic 45.0%
GATACGTATCGGGCAAGTAT+CGG + chr1_1:80718991-80719010 Msa0047640:intron 45.0%
! TGTTAATGCCGGATTTGGTC+AGG + chr1_1:80719285-80719304 Msa0047640:CDS 45.0%
! GTAGTGGTTCTTCTGGAAAC+TGG + chr1_1:80719439-80719458 Msa0047640:CDS 45.0%
GTAATGCACCAGCAATGACA+TGG - chr1_1:80719676-80719695 None:intergenic 45.0%
TGTCATTGCTGGTGCATTAC+TGG + chr1_1:80719676-80719695 Msa0047640:CDS 45.0%
GTCATTGCTGGTGCATTACT+GGG + chr1_1:80719677-80719696 Msa0047640:CDS 45.0%
AAACCTCACCTGCTCATTCT+GGG - chr1_1:80719922-80719941 None:intergenic 45.0%
AAAACCTCACCTGCTCATTC+TGG - chr1_1:80719923-80719942 None:intergenic 45.0%
AAGCGACAAGCATCTCAACA+AGG - chr1_1:80719961-80719980 None:intergenic 45.0%
ATCACGTCAAGCGAAGCTTT+AGG - chr1_1:80720060-80720079 None:intergenic 45.0%
TGCCTTCACTGCAATTGCAT+TGG + chr1_1:80720080-80720099 Msa0047640:CDS 45.0%
GCCTTCACTGCAATTGCATT+GGG + chr1_1:80720081-80720100 Msa0047640:CDS 45.0%
TGCATTGGGCTTGATTTACG+TGG + chr1_1:80720095-80720114 Msa0047640:CDS 45.0%
GCATTGGGCTTGATTTACGT+GGG + chr1_1:80720096-80720115 Msa0047640:CDS 45.0%
TTACGTGGGTTCTTGCAATG+AGG + chr1_1:80720110-80720129 Msa0047640:CDS 45.0%
AAAGAAGACCAAGGCCAAGA+GGG - chr1_1:80720212-80720231 None:intergenic 45.0%
TAAAGAAGACCAAGGCCAAG+AGG - chr1_1:80720213-80720232 None:intergenic 45.0%
! GGCCTTGGTCTTCTTTATCT+TGG + chr1_1:80720216-80720235 Msa0047640:CDS 45.0%
!!! GAGGGGTTTTGCTATTAGGT+TGG + chr1_1:80720382-80720401 Msa0047640:intron 45.0%
CTACTATCATGTGCCTATGC+TGG + chr1_1:80720530-80720549 Msa0047640:CDS 45.0%
AACATTCCCAGTTCCAGCAT+AGG - chr1_1:80720546-80720565 None:intergenic 45.0%
TGGAACTGGGAATGTTCTCA+AGG + chr1_1:80720550-80720569 Msa0047640:CDS 45.0%
TGCTGGTGCTTATTTCATGC+AGG + chr1_1:80720635-80720654 Msa0047640:intron 45.0%
ATAGCAATTCCAAGGACTGC+AGG - chr1_1:80720720-80720739 None:intergenic 45.0%
TGCAGTCCTTGGAATTGCTA+TGG + chr1_1:80720719-80720738 Msa0047640:CDS 45.0%
ATGCAGGGTTGCAAACCTTT+GGG - chr1_1:80720869-80720888 None:intergenic 45.0%
AATGCAGGGTTGCAAACCTT+TGG - chr1_1:80720870-80720889 None:intergenic 45.0%
TGAAAGATTGCGAAGCATGC+CGG - chr1_1:80721241-80721260 None:intergenic 45.0%
! TCTTTTCTACGCTACAGGTG+CGG + chr1_1:80721359-80721378 Msa0047640:intron 45.0%
! TGCCCAAGGTCTTGTACATT+TGG + chr1_1:80721384-80721403 Msa0047640:CDS 45.0%
! GCCCAAGGTCTTGTACATTT+GGG + chr1_1:80721385-80721404 Msa0047640:CDS 45.0%
GAAAGGAACGTAATGCCGAT+TGG - chr1_1:80721577-80721596 None:intergenic 45.0%
GAGACTCAAACAAACCTGCA+TGG - chr1_1:80721712-80721731 None:intergenic 45.0%
!! GACTAGCTTCAAATAGGGGA+AGG - chr1_1:80721754-80721773 None:intergenic 45.0%
ATACTCTGTTGTAACAGCCG+AGG + chr1_1:80721780-80721799 Msa0047640:intron 45.0%
TCCACAGTCAACAACATCCT+CGG - chr1_1:80721800-80721819 None:intergenic 45.0%
! GATGTTGTTGACTGTGGATG+AGG + chr1_1:80721802-80721821 Msa0047640:CDS 45.0%
TGAAAGCCGGTGATTGTCTT+AGG - chr1_1:80721896-80721915 None:intergenic 45.0%
GGTAGAATGAGTCTGAAAGC+CGG - chr1_1:80721909-80721928 None:intergenic 45.0%
CCCCTATCACCAATTCTTGA+AGG + chr1_1:80722066-80722085 Msa0047640:CDS 45.0%
!! AATTAAAATTAGTAAAAAAT+TGG - chr1_1:80714760-80714779 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+GGG + chr1_1:80717829-80717848 Msa0047640:intron 5.0%
!! TAAAAAAATTATAAAAAGTA+GGG + chr1_1:80718061-80718080 Msa0047640:intron 5.0%
!! ATATTTGTATATTAAAAAAA+TGG - chr1_1:80718608-80718627 None:intergenic 5.0%
!! AAAAAATAAAATTTAATCTT+TGG + chr1_1:80718958-80718977 Msa0047640:intron 5.0%
!! TCTCGCGAGTTGAGTTTTGC+TGG - chr1_1:80713273-80713292 None:intergenic 50.0%
TCACACTTCCTCTTCTCCGA+TGG + chr1_1:80713351-80713370 Msa0047640:exon 50.0%
! TTTTGCGGCAGCTTCGTCTT+TGG - chr1_1:80713425-80713444 None:intergenic 50.0%
GAAGATCGAGAGCGAAGATC+TGG + chr1_1:80713447-80713466 Msa0047640:CDS 50.0%
AAGAGCAACCTTCTGCAACC+CGG - chr1_1:80713648-80713667 None:intergenic 50.0%
CCGTAGAAACTTCAGTGGCT+TGG - chr1_1:80713840-80713859 None:intergenic 50.0%
TGTGGCCGTAGAAACTTCAG+TGG - chr1_1:80713845-80713864 None:intergenic 50.0%
GCCCTTACAATGTCTGCTGA+GGG + chr1_1:80714038-80714057 Msa0047640:CDS 50.0%
CTCCCTCAGCAGACATTGTA+AGG - chr1_1:80714043-80714062 None:intergenic 50.0%
CAATGTCTGCTGAGGGAGAA+CGG + chr1_1:80714045-80714064 Msa0047640:CDS 50.0%
AATGTCTGCTGAGGGAGAAC+GGG + chr1_1:80714046-80714065 Msa0047640:CDS 50.0%
ACTTTGCCAATGACTCTGCC+AGG + chr1_1:80714169-80714188 Msa0047640:intron 50.0%
GACTTTCCTGGCAGAGTCAT+TGG - chr1_1:80714178-80714197 None:intergenic 50.0%
! GGCGCCAATTGATGATCTCA+TGG + chr1_1:80714617-80714636 Msa0047640:intron 50.0%
GCAGCATAATGCTGAACCAG+AGG + chr1_1:80714784-80714803 Msa0047640:intron 50.0%
AGCTAGGTAAGTCAGACCTC+TGG + chr1_1:80714993-80715012 Msa0047640:intron 50.0%
CCTGTGTCAGGTAATAGGCA+AGG - chr1_1:80715191-80715210 None:intergenic 50.0%
CCTTGCCTATTACCTGACAC+AGG + chr1_1:80715188-80715207 Msa0047640:intron 50.0%
! CAAGGCCTTCGGTGTGAAAT+AGG - chr1_1:80715267-80715286 None:intergenic 50.0%
AATAGATAGGCCGGCCTAAC+GGG + chr1_1:80715451-80715470 Msa0047640:intron 50.0%
! GGGCCTTATAAGCCTTAGCA+TGG + chr1_1:80715471-80715490 Msa0047640:intron 50.0%
ACACACACTCTCTTAGGGGT+GGG - chr1_1:80715621-80715640 None:intergenic 50.0%
! TATAGTCATTGGCCTGGCTC+TGG + chr1_1:80716238-80716257 Msa0047640:intron 50.0%
!! CGAAGAACGAGAAGTGTTGC+AGG + chr1_1:80716978-80716997 Msa0047640:CDS 50.0%
! ACCAGAGTCCTTTTTCCTGC+CGG + chr1_1:80717344-80717363 Msa0047640:intron 50.0%
! CTCGAGGCATCCTGTTAAAC+AGG + chr1_1:80718321-80718340 Msa0047640:intron 50.0%
TCTACACAGGTTCCTTCAGC+AGG - chr1_1:80718413-80718432 None:intergenic 50.0%
CCCGGATACGAGATACGATA+TGG + chr1_1:80718469-80718488 Msa0047640:intron 50.0%
! CTGCACCGATATGTCGATAC+GGG + chr1_1:80718500-80718519 Msa0047640:intron 50.0%
TGTTGATGTGCTACGAGCCT+AGG - chr1_1:80718654-80718673 None:intergenic 50.0%
GGGCAGAAGCAAATCAACAG+AGG - chr1_1:80719148-80719167 None:intergenic 50.0%
TGCTGCTGCAAGTCTGGTAT+GGG + chr1_1:80719494-80719513 Msa0047640:intron 50.0%
!! AGGAGTGCCATTGCCTACAA+TGG - chr1_1:80719822-80719841 None:intergenic 50.0%
TTGTAGGCAATGGCACTCCT+TGG + chr1_1:80719822-80719841 Msa0047640:intron 50.0%
GCCCAATGCAATTGCAGTGA+AGG - chr1_1:80720085-80720104 None:intergenic 50.0%
GATCGGAGTGAGTCAGAGTT+GGG + chr1_1:80720165-80720184 Msa0047640:CDS 50.0%
TTTGGCACTCCCACCATACT+AGG + chr1_1:80720257-80720276 Msa0047640:intron 50.0%
TCATGTGCCTATGCTGGAAC+TGG + chr1_1:80720536-80720555 Msa0047640:CDS 50.0%
CATGTGCCTATGCTGGAACT+GGG + chr1_1:80720537-80720556 Msa0047640:CDS 50.0%
GACAAAGGTGAGATGCACCA+AGG + chr1_1:80720693-80720712 Msa0047640:CDS 50.0%
ACAGGCAGCAGTTATCTCCT+TGG + chr1_1:80721179-80721198 Msa0047640:intron 50.0%
CAGGCAGCAGTTATCTCCTT+GGG + chr1_1:80721180-80721199 Msa0047640:intron 50.0%
! TTTTACAGGACAGCGCTTGC+AGG + chr1_1:80721600-80721619 Msa0047640:intron 50.0%
AAACCTGCATGGCCAAAACG+AGG - chr1_1:80721701-80721720 None:intergenic 50.0%
AGCCTCTATCAGTGCCTGTT+CGG + chr1_1:80721831-80721850 Msa0047640:CDS 50.0%
GTCCAACAACGTCTACTGCT+TGG - chr1_1:80721862-80721881 None:intergenic 50.0%
AGCAGTAGACGTTGTTGGAC+AGG + chr1_1:80721862-80721881 Msa0047640:CDS 50.0%
GGTCGTCCTAAGACAATCAC+CGG + chr1_1:80721887-80721906 Msa0047640:CDS 50.0%
TCATTCTACCCCTGTTCTCC+TGG + chr1_1:80721919-80721938 Msa0047640:CDS 50.0%
AGGGTTCAGGATACTGACCC+CGG + chr1_1:80713626-80713645 Msa0047640:CDS 55.0%
AGAGCAACCTTCTGCAACCC+GGG - chr1_1:80713647-80713666 None:intergenic 55.0%
!! TGGCTTGGGCACTGAAGTCA+TGG - chr1_1:80713825-80713844 None:intergenic 55.0%
GGCCCTTACAATGTCTGCTG+AGG + chr1_1:80714037-80714056 Msa0047640:CDS 55.0%
GCTTATAAGGCCCGTTAGGC+CGG - chr1_1:80715464-80715483 None:intergenic 55.0%
GGTGGGAATAGTCCAGGCTA+AGG - chr1_1:80715604-80715623 None:intergenic 55.0%
CTTAGGGGTGGGAATAGTCC+AGG - chr1_1:80715610-80715629 None:intergenic 55.0%
CACACACACTCTCTTAGGGG+TGG - chr1_1:80715622-80715641 None:intergenic 55.0%
ATAACCTGCTGGTGCGACAC+TGG + chr1_1:80716476-80716495 Msa0047640:intron 55.0%
AATTCCAGTGTCGCACCAGC+AGG - chr1_1:80716483-80716502 None:intergenic 55.0%
GGTCTTGCTGACAGCATGTG+AGG + chr1_1:80716615-80716634 Msa0047640:intron 55.0%
CTTGCACGCCATGTAAGTCC+TGG + chr1_1:80716692-80716711 Msa0047640:intron 55.0%
! CCAGAGTCCTTTTTCCTGCC+GGG + chr1_1:80717345-80717364 Msa0047640:intron 55.0%
! TCCTTTTTCCTGCCGGGTAC+TGG + chr1_1:80717351-80717370 Msa0047640:intron 55.0%
TCCAGTACCCGGCAGGAAAA+AGG - chr1_1:80717355-80717374 None:intergenic 55.0%
!!! TTTTTCCTGCCGGGTACTGG+AGG + chr1_1:80717354-80717373 Msa0047640:intron 55.0%
!!! TTTTCCTGCCGGGTACTGGA+GGG + chr1_1:80717355-80717374 Msa0047640:intron 55.0%
GGTCTTAACCCTCCAGTACC+CGG - chr1_1:80717366-80717385 None:intergenic 55.0%
TGGTTGTGCTCTGTGAAGCC+CGG + chr1_1:80718451-80718470 Msa0047640:intron 55.0%
ATGTGCTACGAGCCTAGGAC+TGG - chr1_1:80718649-80718668 None:intergenic 55.0%
!! ATTGAGGCAGGTATCGGTGC+AGG + chr1_1:80718878-80718897 Msa0047640:intron 55.0%
!! TATCGGGCAAGTATCGGTGC+AGG + chr1_1:80718997-80719016 Msa0047640:intron 55.0%
!! AGTATCGGTGCAGGATACGC+AGG + chr1_1:80719006-80719025 Msa0047640:intron 55.0%
! GTATCGGTGCAGGATACGCA+GGG + chr1_1:80719007-80719026 Msa0047640:intron 55.0%
TATCGGTGCAGGATACGCAG+GGG + chr1_1:80719008-80719027 Msa0047640:intron 55.0%
CACTTGCACCAGCACTTGCA+CGG - chr1_1:80719219-80719238 None:intergenic 55.0%
! GACTAGTGCTGCTGCAAGTC+TGG + chr1_1:80719488-80719507 Msa0047640:CDS 55.0%
! GTGCTGCTGCAAGTCTGGTA+TGG + chr1_1:80719493-80719512 Msa0047640:intron 55.0%
GCTGGTGCATTACTGGGAGT+TGG + chr1_1:80719683-80719702 Msa0047640:CDS 55.0%
!! TGCTGGTTCCCAGAATGAGC+AGG + chr1_1:80719911-80719930 Msa0047640:CDS 55.0%
GTTCCCAGAATGAGCAGGTG+AGG + chr1_1:80719916-80719935 Msa0047640:intron 55.0%
GGATCGGAGTGAGTCAGAGT+TGG + chr1_1:80720164-80720183 Msa0047640:CDS 55.0%
AGAGGGAGAAGTCGCGTAAG+AGG - chr1_1:80720195-80720214 None:intergenic 55.0%
CTTACGCGACTTCTCCCTCT+TGG + chr1_1:80720195-80720214 Msa0047640:CDS 55.0%
ACTCCCACCATACTAGGTCC+AGG + chr1_1:80720263-80720282 Msa0047640:intron 55.0%
CTCCCACCATACTAGGTCCA+GGG + chr1_1:80720264-80720283 Msa0047640:intron 55.0%
TGCCCTGGACCTAGTATGGT+GGG - chr1_1:80720269-80720288 None:intergenic 55.0%
ACCATACTAGGTCCAGGGCA+GGG + chr1_1:80720269-80720288 Msa0047640:intron 55.0%
TTCCAAGGACTGCAGGACCT+TGG - chr1_1:80720713-80720732 None:intergenic 55.0%
TATTCGCCGAGCAGTTCCTC+TGG + chr1_1:80720818-80720837 Msa0047640:CDS 55.0%
CAAGTGCCAGAGGAACTGCT+CGG - chr1_1:80720827-80720846 None:intergenic 55.0%
TCCTTGGGTCTAATAGGCGC+TGG + chr1_1:80721195-80721214 Msa0047640:CDS 55.0%
TCCAGCGCCTATTAGACCCA+AGG - chr1_1:80721199-80721218 None:intergenic 55.0%
!! CTTCCTCGTTTTGGCCATGC+AGG + chr1_1:80721695-80721714 Msa0047640:CDS 55.0%
! GCCGAGGATGTTGTTGACTG+TGG + chr1_1:80721796-80721815 Msa0047640:intron 55.0%
GCCTCTATCAGTGCCTGTTC+GGG + chr1_1:80721832-80721851 Msa0047640:CDS 55.0%
!! ACCCGAACAGGCACTGATAG+AGG - chr1_1:80721836-80721855 None:intergenic 55.0%
CTATCAGTGCCTGTTCGGGT+TGG + chr1_1:80721836-80721855 Msa0047640:CDS 55.0%
GGCCAAGCAGTAGACGTTGT+TGG + chr1_1:80721857-80721876 Msa0047640:CDS 55.0%
GTAGACGTTGTTGGACAGGC+AGG + chr1_1:80721866-80721885 Msa0047640:CDS 55.0%
TTCGGGAGCCATCGGAGAAG+AGG - chr1_1:80713362-80713381 None:intergenic 60.0%
CGGTTAGGTTCGGGAGCCAT+CGG - chr1_1:80713370-80713389 None:intergenic 60.0%
TGCGGCAGCTTCGTCTTTGG+CGG - chr1_1:80713422-80713441 None:intergenic 60.0%
GGGTTCAGGATACTGACCCC+GGG + chr1_1:80713627-80713646 Msa0047640:CDS 60.0%
TACTGACCCCGGGTTGCAGA+AGG + chr1_1:80713637-80713656 Msa0047640:CDS 60.0%
GAGCAACCTTCTGCAACCCG+GGG - chr1_1:80713646-80713665 None:intergenic 60.0%
CCCGGCAGGAAAAAGGACTC+TGG - chr1_1:80717348-80717367 None:intergenic 60.0%
TTAACCCTCCAGTACCCGGC+AGG - chr1_1:80717362-80717381 None:intergenic 60.0%
! CTTGATGGCCGTGCAAGTGC+TGG + chr1_1:80719208-80719227 Msa0047640:CDS 60.0%
CGACTTCTCCCTCTTGGCCT+TGG + chr1_1:80720201-80720220 Msa0047640:CDS 60.0%
CTGCCCTGGACCTAGTATGG+TGG - chr1_1:80720270-80720289 None:intergenic 60.0%
CACCATACTAGGTCCAGGGC+AGG + chr1_1:80720268-80720287 Msa0047640:intron 60.0%
ACCCTGCCCTGGACCTAGTA+TGG - chr1_1:80720273-80720292 None:intergenic 60.0%
TACTAGGTCCAGGGCAGGGT+TGG + chr1_1:80720273-80720292 Msa0047640:intron 60.0%
CAATGGATCCAACCCTGCCC+TGG - chr1_1:80720284-80720303 None:intergenic 60.0%
GGGCAGGGTTGGATCCATTG+TGG + chr1_1:80720284-80720303 Msa0047640:intron 60.0%
CACCAAGGTCCTGCAGTCCT+TGG + chr1_1:80720708-80720727 Msa0047640:CDS 60.0%
CGAGCAGTTCCTCTGGCACT+TGG + chr1_1:80720825-80720844 Msa0047640:CDS 60.0%
CACAGCAGACCAAGTGCCAG+AGG - chr1_1:80720837-80720856 None:intergenic 60.0%
! CTACAGGTGCGGATTGCCCA+AGG + chr1_1:80721370-80721389 Msa0047640:intron 60.0%
AGGGGAAGGGAGACAGAGAG+AGG - chr1_1:80721740-80721759 None:intergenic 60.0%
ACTGCTTGGCCAACCCGAAC+AGG - chr1_1:80721848-80721867 None:intergenic 60.0%
TTCTCCTGGCTGCTGGGGAT+AGG + chr1_1:80721933-80721952 Msa0047640:CDS 60.0%
TCTCCTGGCTGCTGGGGATA+GGG + chr1_1:80721934-80721953 Msa0047640:CDS 60.0%
TTGCCGGCGCGGTTAGGTTC+GGG - chr1_1:80713379-80713398 None:intergenic 65.0%
GTTGCCGGCGCGGTTAGGTT+CGG - chr1_1:80713380-80713399 None:intergenic 65.0%
! GAACCTAACCGCGCCGGCAA+CGG + chr1_1:80713379-80713398 Msa0047640:CDS 65.0%
!! TTCGTCTTTGGCGGTGCCGC+TGG - chr1_1:80713413-80713432 None:intergenic 65.0%
TAAACGGGCCGGGTCGAGCT+CGG + chr1_1:80715544-80715563 Msa0047640:intron 65.0%
ACCCCTGTTCTCCTGGCTGC+TGG + chr1_1:80721926-80721945 Msa0047640:CDS 65.0%
CCCAGCAGCCAGGAGAACAG+GGG - chr1_1:80721930-80721949 None:intergenic 65.0%
CCCCTGTTCTCCTGGCTGCT+GGG + chr1_1:80721927-80721946 Msa0047640:CDS 65.0%
CCCCAGCAGCCAGGAGAACA+GGG - chr1_1:80721931-80721950 None:intergenic 65.0%
CCCTGTTCTCCTGGCTGCTG+GGG + chr1_1:80721928-80721947 Msa0047640:CDS 65.0%
TCCCCAGCAGCCAGGAGAAC+AGG - chr1_1:80721932-80721951 None:intergenic 65.0%
GCTCCCGAACCTAACCGCGC+CGG + chr1_1:80713373-80713392 Msa0047640:CDS 70.0%
!! TTTGGCGGTGCCGCTGGTGC+TGG - chr1_1:80713407-80713426 None:intergenic 70.0%
CTGCCCTATCCCCAGCAGCC+AGG - chr1_1:80721940-80721959 None:intergenic 70.0%
!! GCTGGTGCTGGCGCCGTTGC+CGG - chr1_1:80713395-80713414 None:intergenic 75.0%
GGCAACGGCGCCAGCACCAG+CGG + chr1_1:80713394-80713413 Msa0047640:CDS 75.0%
! GCGCCGTTGCCGGCGCGGTT+AGG - chr1_1:80713385-80713404 None:intergenic 80.0%
! TGCTGGCGCCGTTGCCGGCG+CGG - chr1_1:80713390-80713409 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 80713178 80722348 80713178 ID=Msa0047640;Name=Msa0047640
chr1_1 mRNA 80713178 80722348 80713178 ID=Msa0047640-mRNA-1;Parent=Msa0047640;Name=Msa0047640-mRNA-1;_AED=0.09;_eAED=0.09;_QI=192|0.95|1|1|0.95|1|24|217|864
chr1_1 exon 80713178 80713468 80713178 ID=Msa0047640-mRNA-1:exon:27859;Parent=Msa0047640-mRNA-1
chr1_1 exon 80713578 80713678 80713578 ID=Msa0047640-mRNA-1:exon:27860;Parent=Msa0047640-mRNA-1
chr1_1 exon 80713796 80713916 80713796 ID=Msa0047640-mRNA-1:exon:27861;Parent=Msa0047640-mRNA-1
chr1_1 exon 80714008 80714067 80714008 ID=Msa0047640-mRNA-1:exon:27862;Parent=Msa0047640-mRNA-1
chr1_1 exon 80714191 80714258 80714191 ID=Msa0047640-mRNA-1:exon:27863;Parent=Msa0047640-mRNA-1
chr1_1 exon 80714433 80714475 80714433 ID=Msa0047640-mRNA-1:exon:27864;Parent=Msa0047640-mRNA-1
chr1_1 exon 80714788 80714826 80714788 ID=Msa0047640-mRNA-1:exon:27865;Parent=Msa0047640-mRNA-1
chr1_1 exon 80714916 80714998 80714916 ID=Msa0047640-mRNA-1:exon:27866;Parent=Msa0047640-mRNA-1
chr1_1 exon 80716372 80716486 80716372 ID=Msa0047640-mRNA-1:exon:27867;Parent=Msa0047640-mRNA-1
chr1_1 exon 80716629 80716703 80716629 ID=Msa0047640-mRNA-1:exon:27868;Parent=Msa0047640-mRNA-1
chr1_1 exon 80716937 80717095 80716937 ID=Msa0047640-mRNA-1:exon:27869;Parent=Msa0047640-mRNA-1
chr1_1 exon 80719199 80719306 80719199 ID=Msa0047640-mRNA-1:exon:27870;Parent=Msa0047640-mRNA-1
chr1_1 exon 80719405 80719509 80719405 ID=Msa0047640-mRNA-1:exon:27871;Parent=Msa0047640-mRNA-1
chr1_1 exon 80719602 80719742 80719602 ID=Msa0047640-mRNA-1:exon:27872;Parent=Msa0047640-mRNA-1
chr1_1 exon 80719828 80719932 80719828 ID=Msa0047640-mRNA-1:exon:27873;Parent=Msa0047640-mRNA-1
chr1_1 exon 80720024 80720245 80720024 ID=Msa0047640-mRNA-1:exon:27874;Parent=Msa0047640-mRNA-1
chr1_1 exon 80720458 80720571 80720458 ID=Msa0047640-mRNA-1:exon:27875;Parent=Msa0047640-mRNA-1
chr1_1 exon 80720657 80720872 80720657 ID=Msa0047640-mRNA-1:exon:27876;Parent=Msa0047640-mRNA-1
chr1_1 exon 80721040 80721099 80721040 ID=Msa0047640-mRNA-1:exon:27877;Parent=Msa0047640-mRNA-1
chr1_1 exon 80721183 80721296 80721183 ID=Msa0047640-mRNA-1:exon:27878;Parent=Msa0047640-mRNA-1
chr1_1 exon 80721376 80721461 80721376 ID=Msa0047640-mRNA-1:exon:27879;Parent=Msa0047640-mRNA-1
chr1_1 exon 80721608 80721716 80721608 ID=Msa0047640-mRNA-1:exon:27880;Parent=Msa0047640-mRNA-1
chr1_1 exon 80721797 80721975 80721797 ID=Msa0047640-mRNA-1:exon:27881;Parent=Msa0047640-mRNA-1
chr1_1 exon 80722059 80722348 80722059 ID=Msa0047640-mRNA-1:exon:27882;Parent=Msa0047640-mRNA-1
chr1_1 five_prime_UTR 80713178 80713369 80713178 ID=Msa0047640-mRNA-1:five_prime_utr;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80713370 80713468 80713370 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80713578 80713678 80713578 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80713796 80713916 80713796 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80714008 80714067 80714008 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80714191 80714258 80714191 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80714433 80714475 80714433 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80714788 80714826 80714788 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80714916 80714998 80714916 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80716372 80716486 80716372 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80716629 80716703 80716629 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80716937 80717095 80716937 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80719199 80719306 80719199 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80719405 80719509 80719405 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80719602 80719742 80719602 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80719828 80719932 80719828 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80720024 80720245 80720024 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80720458 80720571 80720458 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80720657 80720872 80720657 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80721040 80721099 80721040 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80721183 80721296 80721183 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80721376 80721461 80721376 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80721608 80721716 80721608 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80721797 80721975 80721797 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 CDS 80722059 80722131 80722059 ID=Msa0047640-mRNA-1:cds;Parent=Msa0047640-mRNA-1
chr1_1 three_prime_UTR 80722132 80722348 80722132 ID=Msa0047640-mRNA-1:three_prime_utr;Parent=Msa0047640-mRNA-1
Gene Sequence

>Msa0047640

ATGGCTCCCGAACCTAACCGCGCCGGCAACGGCGCCAGCACCAGCGGCACCGCCAAAGACGAAGCTGCCGCAAAAAAGAAGATCGAGAGCGAAGATCTGTCAGATGAAGATTTGGCTTTGAAGCAACAGCTGGAGTTGTATGTTGAGAGGGTTCAGGATACTGACCCCGGGTTGCAGAAGGTTGCTCTTGAAAGCATGAGACAAGAAATCCGTACTTCTACAAGCTCCATGACTTCAGTGCCCAAGCCACTGAAGTTTCTACGGCCACATTACGGTACTCTTAAGGCATATTATGAAACTATGGCGGAATCAGAGTTAAAGAAGTATTTGGCTGACATATTATCAGTATTGGCCCTTACAATGTCTGCTGAGGGAGAACGGGAAAGTCTCAAATACCGATTACTAGGTTCAGAGGGAGATATTGGTTCATGGGGACATGAGTATGTTAGAAATTTGGCTGGAGAAATTGCTCAAGAATATGCAAAACGACAGCATAATGCTGAACCAGAGGCTGTTGATCTTTTGATGGAGGTTGAGGACTTAGATATGTTGACTGAGCATGTTGACAAAACAAACTTTAAAAGGACTTGCTTGTATCTGACAAGTTCAGCTAGGTATCTTCCTGGACCAGATGATATGCTAGTATTGGACATTGCATTTTCAATCTATCTAAAATTTGAAGAATTTCCAAATGCACTGCAAATTGCATTGTTCATGGATAACCTGCTGCATGTGAGGACAGTGTTCACTTCTTGTCATGATGTGCTGCGAAAGAAGCAATTCTGTTACATACTTGCACGCCATGGAATCACTTTTGAGCTTGACGAGGAAATGGTTAACGATGACGAAGAACGAGAAGTGTTGCAGGATATCATCAACAATTCCAAGTTAAGTGAAGGATATTTGACTCTTGCCCGTGATATTGAAGTCATGGAGCCTAAGTCCCCTGAAGATATATACAAGGCACATTTGCTTGATGGCCGTGCAAGTGCTGGTGCAAGTGTTGACTCAGCTAGACAGAACCTTGCTGCTACTTTTGTTAATGCATTTGTTAATGCCGGATTTGGTCAGGATAAGTTAATGACTGTTGCATCAGATTCTTCAAGTAGTGGTTCTTCTGGAAACTGGCTTTTTAAAAACAAGGAGCATGGAAAGACTAGTGCTGCTGCAAGTCTGGGTATGATTTTACTATGGGATGTTGACTCTGGACTTGCACAACTTGACAAATACTTCCATAGTAATGATAACCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTCAATTGTAGTATCAAGAATGACTGTGATCCTGCAATGGCACTCCTTGGTGATTTTATTGAAAAAGAAGATAGTTCGACTAGAATTGGTGCAATTATGGGATTAGGAATTGCATATGCTGGTTCCCAGAATGAGCAGTTACGATACAAGTTGGCACCTATTCTGAGTGATCCTAAAGCTTCGCTTGACGTGATTGCCTTCACTGCAATTGCATTGGGCTTGATTTACGTGGGTTCTTGCAATGAGGAAGTTGCTCAAGCAATCATATTTACATTGATGGATCGGAGTGAGTCAGAGTTGGGAGAGCCTCTTACGCGACTTCTCCCTCTTGGCCTTGGTCTTCTTTATCTTGGGAAGCAGGAAAGTGTTGAGGCAACTGCCGAAGTTTCAAAGACTTTTAATGAAAAAATAAGAAAGTATTGTGACATGACACTACTATCATGTGCCTATGCTGGAACTGGGAATGTTCTCAAGGTGCAAAATCTTTTGGGTCATTGTTCACAACATCTTGACAAAGGTGAGATGCACCAAGGTCCTGCAGTCCTTGGAATTGCTATGGTAGCAATGGCTGAAGAATTAGGTGTTGAGATGGCTATCCGATCGTTAGAACATCTTCTACAGTATGGAGAGCAGAATATTCGCCGAGCAGTTCCTCTGGCACTTGGTCTGCTGTGTATATCAAACCCAAAGGTCAATGTTATGGATACCTTAAGCAGACTTAGCCATGATACTGATTCAGAAGTTGCAATGGCAGCAGTTATCTCCTTGGGTCTAATAGGCGCTGGAACAAACAATGCTCGAATTGCCGGCATGCTTCGCAATCTTTCAAGCTATTACTACAAGGATACCAGCCTTCTATTTTGTGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGACTATTAACACTTAATCCTTATCATTCTGACCGTGTCTTACTATCACCGACAGCGCTTGCAGGACTAATTACTATGTTGCATGCATGCCTTGATATGAAAGCTATTGTGTTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCCATGCAGCCGAGGATGTTGTTGACTGTGGATGAGGACTTGAAGCCTCTATCAGTGCCTGTTCGGGTTGGCCAAGCAGTAGACGTTGTTGGACAGGCAGGTCGTCCTAAGACAATCACCGGCTTTCAGACTCATTCTACCCCTGTTCTCCTGGCTGCTGGGGATAGGGCAGAGCTAGCCACAGAAAAATATCTTCCCCTATCACCAATTCTTGAAGGTTTTGTAATTTTAAAGGACAATCCAGATTATAGGGAAGAGTGA
Protein sequence

>Msa0047640

MAPEPNRAGNGASTSGTAKDEAAAKKKIESEDLSDEDLALKQQLELYVERVQDTDPGLQKVALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMAESELKKYLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQHNAEPEAVDLLMEVEDLDMLTEHVDKTNFKRTCLYLTSSARYLPGPDDMLVLDIAFSIYLKFEEFPNALQIALFMDNLLHVRTVFTSCHDVLRKKQFCYILARHGITFELDEEMVNDDEEREVLQDIINNSKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVASDSSSSGSSGNWLFKNKEHGKTSAAASLGMILLWDVDSGLAQLDKYFHSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDFIEKEDSSTRIGAIMGLGIAYAGSQNEQLRYKLAPILSDPKASLDVIAFTAIALGLIYVGSCNEEVAQAIIFTLMDRSESELGEPLTRLLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCSQHLDKGEMHQGPAVLGIAMVAMAEELGVEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKDTSLLFCVRIAQGLVHLGKGLLTLNPYHSDRVLLSPTALAGLITMLHACLDMKAIVLGKYHYVLYFLVLAMQPRMLLTVDEDLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYLPLSPILEGFVILKDNPDYREE*