AlfalfaGEDB | Msa0718960

M. sativa cultivar zhongmu-4 / Msa0718960

KEGG: K19882
GO: -
PFAM: PF03283.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0718960	RHN54619.1	96.021	377	6	1	49	425	49	416	0.0	756

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0718960	sp\|Q6DBP4\|PAE8_ARATH	70.655	351	103	0	49	399	45	395	0.0	556

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0718960	A0A396HMS2	96.021	377	6	1	49	425	49	416	0.0	756

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0522830	Msa0718960	0.804610	1.988567e-49	-8.615850e-47
Msa0718960	Msa0801610	0.965972	2.652506e-125	-8.615850e-47
Msa0718960	Msa0840010	0.961275	1.630752e-119	-8.615850e-47
Msa0718960	Msa1294520	0.859743	3.348762e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0718960	MtrunA17_Chr5g0408881	96.021	377	6	1	49	425	49	416	0.0	756
Msa0718960	MtrunA17_Chr8g0369651	73.410	346	92	0	49	394	48	393	0.0	560
Msa0718960	MtrunA17_Chr5g0418101	69.914	349	101	1	49	397	62	406	0.0	533
Msa0718960	MtrunA17_Chr8g0369681	68.208	346	110	0	49	394	47	392	0.0	529
Msa0718960	MtrunA17_Chr1g0193381	55.652	345	151	1	50	394	74	416	3.95e-150	432
Msa0718960	MtrunA17_Chr7g0270931	52.210	362	167	2	50	411	73	428	3.20e-146	424
Msa0718960	MtrunA17_Chr1g0193761	53.779	344	157	1	50	393	61	402	1.49e-145	420
Msa0718960	MtrunA17_Chr7g0271231	53.779	344	157	1	50	393	77	418	1.44e-141	410
Msa0718960	MtrunA17_Chr4g0069571	53.198	344	159	1	50	393	79	420	4.26e-139	404
Msa0718960	MtrunA17_Chr1g0203101	52.149	349	164	2	50	395	60	408	3.11e-136	397

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0718960	AT4G19420.1	70.655	351	103	0	49	399	45	395	0.0	556
Msa0718960	AT4G19420.2	70.655	351	103	0	49	399	45	395	0.0	556
Msa0718960	AT4G19420.4	64.249	386	103	1	49	399	45	430	0.0	540
Msa0718960	AT4G19410.1	60.294	340	134	1	50	388	45	384	8.10e-163	464
Msa0718960	AT5G45280.2	57.353	340	144	1	50	388	45	384	1.14e-157	451
Msa0718960	AT4G19410.2	60.062	323	129	0	50	372	45	367	2.82e-152	442
Msa0718960	AT5G26670.1	55.652	345	151	1	50	394	74	416	4.76e-148	427
Msa0718960	AT3G05910.1	54.942	344	153	1	50	393	73	414	1.57e-146	423
Msa0718960	AT3G62060.1	55.491	346	151	2	50	394	76	419	6.11e-146	422
Msa0718960	AT3G62060.2	55.202	346	152	2	50	394	76	419	3.73e-145	421

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Find 86 sgRNAs with CRISPR-Local

Find 820 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGAAATGCAAGGAACA+TGG	0.604137	5_1:+13440167	Msa0718960:CDS
AAATATTCTGGTGTTTGTAC+TGG	0.409501	5_1:+13437871	Msa0718960:CDS
AACAGGAGACAGTTTAATCC+AGG	0.539572	5_1:+13438639	Msa0718960:CDS
AATCAACTAGATCTAATGCA+AGG	0.629815	5_1:+13439958	Msa0718960:CDS
AATCACTTTACTCAAGAGTG+CGG	0.706525	5_1:+13437925	Msa0718960:CDS
ACCAATCTTCCTTGTGAATG+CGG	0.548127	5_1:+13439697	Msa0718960:CDS
ACCAGCTTACCATTTAGATA+GGG	0.500291	5_1:+13438357	Msa0718960:CDS
ACCGATACGTCTTGCGAGAA+AGG	0.388612	5_1:-13438563	None:intergenic
AGAAAGAGAGCTTCATTGTT+AGG	0.342137	5_1:+13445600	Msa0718960:three_prime_UTR
AGAACACAAGATTAAGCCAA+TGG	0.614911	5_1:+13437840	Msa0718960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTCACAACTTCATTTGTT+AGG	-	chr5_1:13433306-13433325	None:intergenic	30.0%
TAGGTTCTTATTGGTCAATA+TGG	+	chr5_1:13433352-13433371	Msa0718960:intron	30.0%
GAGTAGCATATTTGATAGAA+CGG	+	chr5_1:13433691-13433710	Msa0718960:intron	30.0%
ATCTCATGAAACTCTATTTG+AGG	+	chr5_1:13433723-13433742	Msa0718960:intron	30.0%
AGTTAAGGGATCAAAATGAA+AGG	-	chr5_1:13433885-13433904	None:intergenic	30.0%
TTTCAATGGGAACAAAATAG+AGG	+	chr5_1:13434237-13434256	Msa0718960:intron	30.0%
CTAAAAAATTGTATTGGAGG+AGG	-	chr5_1:13434610-13434629	None:intergenic	30.0%
TGGAAGAAATAGAGGAAAAT+GGG	-	chr5_1:13434695-13434714	None:intergenic	30.0%
CCACAATTGCAAAATTTAGA+GGG	+	chr5_1:13434935-13434954	Msa0718960:intron	30.0%
ATAACATGATCGGGATATAT+TGG	+	chr5_1:13435047-13435066	Msa0718960:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	13433247	13445695	13433247	ID=Msa0718960;Name=Msa0718960
chr5_1	mRNA	13433247	13445695	13433247	ID=Msa0718960-mRNA-1;Parent=Msa0718960;Name=Msa0718960-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0\|0.73\|0.81\|0.87\|0.73\|0.68\|16\|211\|426
chr5_1	exon	13433247	13433253	13433247	ID=Msa0718960-mRNA-1:exon:5469;Parent=Msa0718960-mRNA-1
chr5_1	exon	13433541	13433548	13433541	ID=Msa0718960-mRNA-1:exon:5470;Parent=Msa0718960-mRNA-1
chr5_1	exon	13437835	13437962	13437835	ID=Msa0718960-mRNA-1:exon:5471;Parent=Msa0718960-mRNA-1
chr5_1	exon	13438354	13438420	13438354	ID=Msa0718960-mRNA-1:exon:5472;Parent=Msa0718960-mRNA-1
chr5_1	exon	13438531	13438660	13438531	ID=Msa0718960-mRNA-1:exon:5473;Parent=Msa0718960-mRNA-1
chr5_1	exon	13438739	13438818	13438739	ID=Msa0718960-mRNA-1:exon:5474;Parent=Msa0718960-mRNA-1
chr5_1	exon	13438912	13438998	13438912	ID=Msa0718960-mRNA-1:exon:5475;Parent=Msa0718960-mRNA-1
chr5_1	exon	13439078	13439202	13439078	ID=Msa0718960-mRNA-1:exon:5476;Parent=Msa0718960-mRNA-1
chr5_1	exon	13439301	13439361	13439301	ID=Msa0718960-mRNA-1:exon:5477;Parent=Msa0718960-mRNA-1
chr5_1	exon	13439512	13439565	13439512	ID=Msa0718960-mRNA-1:exon:5478;Parent=Msa0718960-mRNA-1
chr5_1	exon	13439659	13439736	13439659	ID=Msa0718960-mRNA-1:exon:5479;Parent=Msa0718960-mRNA-1
chr5_1	exon	13439874	13439979	13439874	ID=Msa0718960-mRNA-1:exon:5480;Parent=Msa0718960-mRNA-1
chr5_1	exon	13440077	13440222	13440077	ID=Msa0718960-mRNA-1:exon:5481;Parent=Msa0718960-mRNA-1
chr5_1	exon	13440438	13440560	13440438	ID=Msa0718960-mRNA-1:exon:5482;Parent=Msa0718960-mRNA-1
chr5_1	exon	13440882	13440956	13440882	ID=Msa0718960-mRNA-1:exon:5483;Parent=Msa0718960-mRNA-1
chr5_1	exon	13445479	13445695	13445479	ID=Msa0718960-mRNA-1:exon:5484;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13433247	13433253	13433247	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13433541	13433548	13433541	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13437835	13437962	13437835	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13438354	13438420	13438354	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13438531	13438660	13438531	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13438739	13438818	13438739	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13438912	13438998	13438912	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13439078	13439202	13439078	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13439301	13439361	13439301	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13439512	13439565	13439512	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13439659	13439736	13439659	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13439874	13439979	13439874	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13440077	13440222	13440077	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13440438	13440560	13440438	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13440882	13440956	13440882	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	CDS	13445479	13445484	13445479	ID=Msa0718960-mRNA-1:cds;Parent=Msa0718960-mRNA-1
chr5_1	three_prime_UTR	13445485	13445695	13445485	ID=Msa0718960-mRNA-1:three_prime_utr;Parent=Msa0718960-mRNA-1

Gene Sequence

>Msa0718960

ATGACAGCTGCTACTAATGAAGAACACAAGATTAAGCCAATGGTTAAAGTTAAATATTCTGGTGTTTGTACTGGTATTGCTGAAGGTAGAAGCTGGTTATGTACCAATCACTTTACTCAAGAGTGCGGTATCAAAAGGAGCCGTCCACCAGCTTACCATTTAGATAGGGGATTTGGAACAGGAATTAACAGTTGGTTAGTTCAATTTGAGGGAGGGGGATGGTGCAATAATGTCACTACTTGCCTTTCTCGCAAGACGTATCGGTTAGGTTCATCTAAGCATATGGCTAATCAAATTGCCTTTTCAGGAATTTTAAATAACAGGAGACAGTTTAATCCAGATTTCTACAATTGGAACAGAATCAAGGTTAGATATTGTGACGGTTCGTCTTTTACCGGTGATGTGGAAGCAGTCAATCCAGTAACTAAGTTGCACTTCAGAGGAGCAAGAATTTTTAATGCAGTTATGGAAGATTTGCTGGCAAAGGGAATGAAAAATGCTAAAAATGCTATTATCTCAGGATGTTCAGCTGGTGGGTTAGCTTCAATACTGCACTGTGATCGCTTCCGAGCTCTTTTTCCAAGAGGAGCTAAAGTGAAATGCCTCTCAGATGCCGGTTACTTTATCAACGCAAGGGATGTATCTGGAGCACATCACGTTGAACAGTACTTCACTCAAGTTGTTACAACACATGGCTCTGCAAAGAATTTGCCTAGATCATGCACTTCAAGACTCAGTCCAAGGCTGTGCTTTTTCCCTCAATATGTTATATCACAAATCGCTACACCAATCTTCCTTGTGAATGCGGCATACGACTCATGGCAGATTAAGAACATTTTAGCACCGGGAGCTGCTGATCCTCGTGGACACTGGCACAGCTGCAAGTTAGACATAAACAACTGCTCTTCTAATCAACTAGATCTAATGCAAGGCTTTAGAACACAATTTTTAAGGGCATTGACTGCTGTAGGAAACTCTACATCCAAAGGAATGTTCATAGACTCTTGCTATGCTCACTGCCAAACTGAAATGCAAGGAACATGGTTTAGTAGTGACTCTCCATCATTGGCCAAGACGAGCATTGCAAAAGCTGTAGCAGACTGGTTTTATGAAAGAAAGCTATTCCATAAGATAGATTGTCCTTACCCTTGCAATCCGAGTTGTAAAAACCGCGTTTTTGAACCACAAGAAAACCCAGGAAAAAATGACACCACCAAAGGAACTTCATCAGCTGCATCAACTATAAAGCCCAGTTTTCCAAAACTATCAAACAAGAAATGA

Protein sequence

>Msa0718960

MTAATNEEHKIKPMVKVKYSGVCTGIAEGRSWLCTNHFTQECGIKRSRPPAYHLDRGFGTGINSWLVQFEGGGWCNNVTTCLSRKTYRLGSSKHMANQIAFSGILNNRRQFNPDFYNWNRIKVRYCDGSSFTGDVEAVNPVTKLHFRGARIFNAVMEDLLAKGMKNAKNAIISGCSAGGLASILHCDRFRALFPRGAKVKCLSDAGYFINARDVSGAHHVEQYFTQVVTTHGSAKNLPRSCTSRLSPRLCFFPQYVISQIATPIFLVNAAYDSWQIKNILAPGAADPRGHWHSCKLDINNCSSNQLDLMQGFRTQFLRALTAVGNSTSKGMFIDSCYAHCQTEMQGTWFSSDSPSLAKTSIAKAVADWFYERKLFHKIDCPYPCNPSCKNRVFEPQENPGKNDTTKGTSSAASTIKPSFPKLSNKK*