AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1294520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1294520 MtrunA17_Chr8g0371601 97.695 694 16 0 1 694 1 694 0.0 1409
Msa1294520 MtrunA17_Chr5g0405701 79.037 706 132 5 4 694 28 732 0.0 1136
Msa1294520 MtrunA17_Chr1g0197591 27.725 422 275 9 280 686 197 603 7.38e-35 142
Msa1294520 MtrunA17_Chr1g0194741 28.606 416 248 12 300 687 234 628 3.43e-34 139
Msa1294520 MtrunA17_Chr8g0377481 38.298 188 115 1 424 611 345 531 3.84e-28 121
Msa1294520 MtrunA17_Chr8g0392301 33.091 275 134 5 460 693 372 637 1.05e-27 119
Msa1294520 MtrunA17_Chr3g0122391 36.216 185 117 1 427 611 396 579 5.02e-27 117
Msa1294520 MtrunA17_Chr5g0447641 29.474 285 183 6 426 693 572 855 1.95e-23 106
Msa1294520 MtrunA17_Chr4g0013831 30.088 226 136 3 461 686 334 537 1.19e-22 103
Msa1294520 MtrunA17_Chr7g0269631 30.472 233 140 3 461 693 334 544 1.26e-22 102
Msa1294520 MtrunA17_Chr3g0136601 29.707 239 147 5 474 693 373 609 3.58e-18 89.4
Msa1294520 MtrunA17_Chr1g0150511 30.734 218 135 6 405 609 298 512 8.76e-17 85.1
Msa1294520 MtrunA17_Chr1g0186431 29.496 139 97 1 461 599 355 492 5.78e-13 72.4
Msa1294520 MtrunA17_Chr7g0274831 26.829 164 119 1 460 623 364 526 1.46e-12 71.2
Msa1294520 MtrunA17_Chr1g0190021 25.000 168 125 1 460 627 360 526 3.63e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1294520 AT2G17820.1 70.732 697 187 6 8 693 30 720 0.0 1006
Msa1294520 AT2G47430.1 33.007 306 188 5 395 686 318 620 3.18e-40 159
Msa1294520 AT2G01830.2 32.492 317 181 6 405 693 406 717 1.43e-34 142
Msa1294520 AT2G01830.1 32.492 317 181 6 405 693 383 694 1.79e-34 141
Msa1294520 AT2G01830.4 32.492 317 181 6 405 693 383 694 1.79e-34 141
Msa1294520 AT2G01830.6 32.492 317 181 6 405 693 383 694 1.79e-34 141
Msa1294520 AT2G01830.3 32.492 317 181 6 405 693 383 694 1.79e-34 141
Msa1294520 AT2G01830.5 32.492 317 181 6 405 693 395 706 2.16e-34 141
Msa1294520 AT1G27320.1 32.673 303 184 5 405 693 384 680 1.26e-31 132
Msa1294520 AT5G35750.1 31.488 289 175 6 424 693 540 824 1.14e-28 123
Msa1294520 AT1G66340.1 30.043 233 137 3 461 693 333 539 7.71e-25 110
Msa1294520 AT2G40940.1 29.915 234 142 3 460 693 332 543 8.96e-19 91.3
Msa1294520 AT5G10720.1 38.129 139 84 2 474 612 369 505 3.24e-18 89.7

Find 258 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAAGATGATTCATATTT+TGG 0.110114 8_3:-52345762 Msa1294520:three_prime_UTR
ACCTCATATTTGCAAGAAAT+TGG 0.164195 8_3:+52348326 None:intergenic
CAGAAAAGTAACTGCTTATT+AGG 0.180290 8_3:-52345554 Msa1294520:three_prime_UTR
TCACTATCACCATAAGAATT+TGG 0.199041 8_3:+52347444 None:intergenic
GTTCTCATGTTGCTTCATTT+TGG 0.222254 8_3:+52347377 None:intergenic
CTTGCGAAGCTCCGTCTTTA+CGG 0.241218 8_3:+52345823 None:intergenic
CCAAGATGTTATTCAGTAAA+TGG 0.249032 8_3:+52348066 None:intergenic
GTGTTTGGATACTCTGAATT+TGG 0.265596 8_3:+52351928 None:intergenic
CATGGAAGATATGGAATTAT+AGG 0.283979 8_3:+52351753 None:intergenic
TAGGTATTGACCCGAGTAAA+TGG 0.298638 8_3:-52347047 Msa1294520:CDS
GCCTCATATCCATCCATCTT+TGG 0.303088 8_3:+52345067 None:intergenic
TTCAGCAGCATTGCCGGTTT+GGG 0.306475 8_3:-52349658 Msa1294520:CDS
GGTTCTGACATATCTGAAAT+TGG 0.309164 8_3:-52345653 Msa1294520:three_prime_UTR
GAGAGTCTTGAGATTGAATA+TGG 0.309981 8_3:-52345674 Msa1294520:three_prime_UTR
CATACCAAGAAAGCATATAA+TGG 0.311598 8_3:-52348539 Msa1294520:CDS
GAAATAAGGAAATCAGAAAT+TGG 0.311793 8_3:-52345037 Msa1294520:three_prime_UTR
CTAGGTACACAACATATAAA+AGG 0.316563 8_3:-52351815 Msa1294520:five_prime_UTR
AGCTATACTTATTGAGTCTT+CGG 0.317592 8_3:+52349755 None:intergenic
AAAGAAACCTGAGCTTAAAA+TGG 0.319263 8_3:-52349463 Msa1294520:CDS
CACGAATTGCATGGAAGATA+TGG 0.319717 8_3:+52351744 None:intergenic
TTTCAGCAGCATTGCCGGTT+TGG 0.320446 8_3:-52349659 Msa1294520:CDS
CCTGTCAATGGCGAGAAAAT+TGG 0.321831 8_3:-52349798 Msa1294520:CDS
TTCATATGACTTGATCCTAA+TGG 0.325693 8_3:-52345213 Msa1294520:three_prime_UTR
TTCTCTTTGTTTGTCTCCAT+TGG 0.328818 8_3:+52345610 None:intergenic
GCCAATTTCTTGCAAATATG+AGG 0.329015 8_3:-52348327 Msa1294520:intron
AACCAAGTCTCTAAATAGTT+TGG 0.329706 8_3:-52350322 Msa1294520:CDS
AGTCAAATTCTGCCTCTTCT+AGG 0.333858 8_3:+52347882 None:intergenic
AAAGAGAAACTTCCTGTGTT+TGG 0.334827 8_3:+52351913 None:intergenic
CATGCCCACTTCTAAACATT+TGG 0.335841 8_3:+52344955 None:intergenic
ATACCAAGAAAGCATATAAT+GGG 0.337592 8_3:-52348538 Msa1294520:CDS
CCGCCTTTCTTCTTGCTTCG+AGG 0.341358 8_3:+52348371 None:intergenic
ATGATATGCCAAAGCTAGTT+CGG 0.350156 8_3:-52347692 Msa1294520:CDS
TATGAAAATCCAAATTCTTA+TGG 0.352038 8_3:-52347453 Msa1294520:CDS
ATGAGGCAACAAAAGAAATA+AGG 0.352677 8_3:-52345051 Msa1294520:three_prime_UTR
TATTTACTTCTAGAGTTAGT+TGG 0.353325 8_3:-52351394 Msa1294520:five_prime_UTR
ATTTAGTTCAAGAAAATTGC+TGG 0.353944 8_3:+52344633 None:intergenic
TAGACTTGAGCACAGATATA+TGG 0.354728 8_3:-52345925 Msa1294520:three_prime_UTR
TATAATCGCATTAGTGTTCC+TGG 0.355538 8_3:+52346366 None:intergenic
AGGCACGGAGGCACCGGTCT+TGG 0.360852 8_3:-52346810 Msa1294520:three_prime_UTR
CTCTTTCTGCTTGAGTGGCT+TGG 0.362577 8_3:+52350172 None:intergenic
GCTATTACTGTGGGAACAAT+AGG 0.363611 8_3:+52351890 None:intergenic
AAAATCATACACTAGTGTTA+TGG 0.366133 8_3:+52351860 None:intergenic
GACATTGAGTAGTTGAATAC+TGG 0.372323 8_3:+52350905 None:intergenic
TCTTTGTGAAATGCCATGTT+AGG 0.374134 8_3:+52350352 None:intergenic
AGATATCAAGATTGTCAAAA+AGG 0.382599 8_3:-52346394 Msa1294520:three_prime_UTR
CTTATTATAGGTTAATAAGA+TGG 0.385980 8_3:-52346421 Msa1294520:intron
ATCTCAGACACAAGTTGAAT+TGG 0.386650 8_3:-52351161 Msa1294520:five_prime_UTR
TGATATGCCAAAGCTAGTTC+GGG 0.388131 8_3:-52347691 Msa1294520:CDS
CAGGCAGTGGATGCTCTAAA+TGG 0.388139 8_3:-52345293 Msa1294520:three_prime_UTR
GTTACTTTCAGCAGCATTGC+CGG 0.388211 8_3:-52349664 Msa1294520:CDS
AAATGTTAACTTGTGCCCTT+TGG 0.389208 8_3:+52351503 None:intergenic
ACCAGATTCAAGTTCTACTA+TGG 0.393733 8_3:-52351046 Msa1294520:exon
TATAGCACATAGGTGGAATC+TGG 0.394834 8_3:-52347914 Msa1294520:intron
AAGCTCCGTCTTTACGGTAT+TGG 0.396922 8_3:+52345829 None:intergenic
TCCATCAGCTTAAAGTCAAT+TGG 0.397490 8_3:+52344914 None:intergenic
AATGTTAACTTGTGCCCTTT+GGG 0.398877 8_3:+52351504 None:intergenic
ATCATCTTTGCTTTGTAAAG+AGG 0.401741 8_3:+52345773 None:intergenic
TATTAGAAGTCTTCTTTGAA+TGG 0.404156 8_3:+52347355 None:intergenic
ATCCGAATTGCTTCTGCTCC+AGG 0.406373 8_3:+52347412 None:intergenic
CCATTTACTGAATAACATCT+TGG 0.406452 8_3:-52348066 Msa1294520:CDS
TTGATAACAAAATGATACTT+TGG 0.408163 8_3:-52347332 Msa1294520:CDS
GTATAGCTTATAAAATATAA+AGG 0.412199 8_3:-52344815 Msa1294520:three_prime_UTR
TTCATATGCTGCAAATGAAT+TGG 0.417578 8_3:+52349869 None:intergenic
CTTGATCCTAATGGATTGTC+AGG 0.421407 8_3:-52345204 Msa1294520:intron
TTCTAAATTCATTAGCATAC+AGG 0.422479 8_3:-52345993 Msa1294520:three_prime_UTR
TCAACAACAATGACAAATGT+TGG 0.424662 8_3:+52345959 None:intergenic
GAATTCAGACCCTCCGGAGC+TGG 0.424803 8_3:+52346013 None:intergenic
TACCTGACGGTGTAGCTTCA+TGG 0.425005 8_3:-52349719 Msa1294520:CDS
ACACCGATGGCAGCAGTAAT+CGG 0.426125 8_3:-52348179 Msa1294520:CDS
TGCTGTAGGCAACGGACAAC+AGG 0.426837 8_3:-52345312 Msa1294520:three_prime_UTR
GAATCTCCCCGAACTAGCTT+TGG 0.429030 8_3:+52347684 None:intergenic
AAAAGCATTGTTGCAGTTGT+GGG 0.430753 8_3:-52349624 Msa1294520:CDS
TTTATTTCAACAAGAGCAAA+AGG 0.434209 8_3:-52345497 Msa1294520:three_prime_UTR
GCTATACTTATTGAGTCTTC+GGG 0.439537 8_3:+52349756 None:intergenic
AGCCAAACTATTTAGAGACT+TGG 0.442714 8_3:+52350320 None:intergenic
ATAGCAACAAGTCTGCGATT+TGG 0.446888 8_3:-52349839 Msa1294520:CDS
GTTATGCTAGCTATCTTGAT+TGG 0.449619 8_3:-52350387 Msa1294520:CDS
AAGACGGAGCTTCGCAAGAA+AGG 0.451119 8_3:-52345818 Msa1294520:three_prime_UTR
TCTTCATGAACTTCATGACT+TGG 0.452162 8_3:+52349366 None:intergenic
TGACAGGATCAAGTTGTTCC+CGG 0.454045 8_3:+52349814 None:intergenic
GACTTTGGAAGGGAACTTGA+AGG 0.454376 8_3:-52347863 Msa1294520:CDS
CAACAACAATGACAAATGTT+GGG 0.456008 8_3:+52345960 None:intergenic
ACCCTGGAGCAGAAGCAATT+CGG 0.457255 8_3:-52347414 Msa1294520:CDS
CTCAACTCTTTCTGCTTGAG+TGG 0.460857 8_3:+52350167 None:intergenic
TGCCATGAAGCTACACCGTC+AGG 0.462950 8_3:+52349717 None:intergenic
AGGCAGAATTTGACTTTGGA+AGG 0.465133 8_3:-52347874 Msa1294520:CDS
TGATGCTCACTTTCCAGCTC+CGG 0.465154 8_3:-52346026 Msa1294520:three_prime_UTR
TAAAAGCATTGTTGCAGTTG+TGG 0.467925 8_3:-52349625 Msa1294520:CDS
ACGCGAGAGCGAAATTTGTA+TGG 0.470371 8_3:-52345871 Msa1294520:three_prime_UTR
CAGCATCATGATAATTGAAA+AGG 0.471138 8_3:-52351970 None:intergenic
TCTCTTTGTGAGTGAAAGAA+TGG 0.472536 8_3:+52344886 None:intergenic
ATGAGTCAATGTAATATTGC+TGG 0.473523 8_3:+52349325 None:intergenic
GCCATAGTAGAACTTGAATC+TGG 0.474458 8_3:+52351045 None:intergenic
ACTCGATAACTGTCAAGTAT+AGG 0.475293 8_3:-52349974 Msa1294520:CDS
CTTCTTAACTTATGCCCAAA+GGG 0.475601 8_3:-52351518 Msa1294520:intron
ACCAATTGACTTTAAGCTGA+TGG 0.475909 8_3:-52344915 Msa1294520:three_prime_UTR
GAAGAGGCAGAATTTGACTT+TGG 0.476112 8_3:-52347878 Msa1294520:CDS
AGCATTTCATAGAGACTTGA+AGG 0.476420 8_3:-52349937 Msa1294520:CDS
CGTGGTTCGCCTAGCAATCA+TGG 0.479373 8_3:-52350860 Msa1294520:intron
ATTAGGATCAAGTCATATGA+AGG 0.480841 8_3:+52345215 None:intergenic
ATATTGCTGGTGACCTAGCC+TGG 0.481011 8_3:+52349338 None:intergenic
CACATACCTGACAATCCATT+AGG 0.485467 8_3:+52345198 None:intergenic
TCCGTGCCTGAAATGAGAAA+AGG 0.485762 8_3:+52346824 None:intergenic
AAGAAAATTCCACAAGGATG+TGG 0.485997 8_3:-52350941 Msa1294520:CDS
CAAGTCTGCGATTTGGTACC+GGG 0.486373 8_3:-52349832 Msa1294520:CDS
AGAAGTCTCTCGAAGGTTTG+AGG 0.487229 8_3:-52345412 Msa1294520:three_prime_UTR
ATCCTACTACAGTGTCTTCG+TGG 0.488058 8_3:-52350878 Msa1294520:CDS
AGCTTCATGGCACGTTTCTG+TGG 0.489431 8_3:-52349706 Msa1294520:CDS
TCACTGTGTATTATCGTCAT+TGG 0.491172 8_3:-52348466 Msa1294520:CDS
GCCAAAGATGGATGGATATG+AGG 0.491952 8_3:-52345068 Msa1294520:three_prime_UTR
AGTGAAACAAGTAGGGTTAG+TGG 0.492488 8_3:-52345458 Msa1294520:three_prime_UTR
AACACAGAATCCCATTTACT+CGG 0.494050 8_3:+52347036 None:intergenic
CTAAAATAATTTCTACATTG+TGG 0.494150 8_3:+52347807 None:intergenic
TCATGAACTTCATGACTTGG+AGG 0.494671 8_3:+52349369 None:intergenic
ACAAGTCTGCGATTTGGTAC+CGG 0.495830 8_3:-52349833 Msa1294520:CDS
TCTTTGCATTGTCAGATCCT+TGG 0.496165 8_3:-52346787 Msa1294520:intron
AAAGTTATGGCATATTGCAT+TGG 0.497550 8_3:+52351786 None:intergenic
TGCCCATGTGACAGCCCTCA+TGG 0.504539 8_3:+52350022 None:intergenic
TAGTGTAGGGCAGTTAATGA+AGG 0.504796 8_3:-52349583 Msa1294520:CDS
TCAAGTCTCTATGAAATGCT+TGG 0.505424 8_3:+52349940 None:intergenic
CATTTCAGGCACGGAGGCAC+CGG 0.506583 8_3:-52346816 Msa1294520:three_prime_UTR
TGCTCACTTTCCAGCTCCGG+AGG 0.508924 8_3:-52346023 Msa1294520:three_prime_UTR
AGGTATTGACCCGAGTAAAT+GGG 0.509028 8_3:-52347046 Msa1294520:CDS
GAAGACTCAATAAGTATAGC+TGG 0.512406 8_3:-52349753 Msa1294520:CDS
TTTGTTGAATTTGTAAGTAG+AGG 0.513089 8_3:+52349483 None:intergenic
AAGATACAGCAGTAATTCAA+AGG 0.514361 8_3:-52345376 Msa1294520:three_prime_UTR
AGGAAAGTGAAAGAAAGTTA+TGG 0.518034 8_3:+52351773 None:intergenic
GGTTCAAGTAAAGCTATGAA+TGG 0.518559 8_3:-52345437 Msa1294520:three_prime_UTR
TATACATTCGAAGTCATGTT+GGG 0.520373 8_3:+52344776 None:intergenic
TCTAATCTTGTAACTGCCAA+TGG 0.521244 8_3:-52345626 Msa1294520:three_prime_UTR
TTATTATAGGTTAATAAGAT+GGG 0.523404 8_3:-52346420 Msa1294520:intron
CAACTGCACTTTATAGTGTA+GGG 0.526485 8_3:-52349596 Msa1294520:CDS
CATGAACTTCATGACTTGGA+GGG 0.527216 8_3:+52349370 None:intergenic
TGGTTATGTGGCTATTACTG+TGG 0.528007 8_3:+52351880 None:intergenic
AATAAAGCAGATGCCAAAGA+TGG 0.528045 8_3:-52345080 Msa1294520:intron
ACAACTGCACTTTATAGTGT+AGG 0.528302 8_3:-52349597 Msa1294520:CDS
CTAAAGGTAGTGAAACAAGT+AGG 0.530053 8_3:-52345466 Msa1294520:three_prime_UTR
ATCCATGAGGGCTGTCACAT+GGG 0.532393 8_3:-52350024 Msa1294520:CDS
ATTAACTGACCATGATTGCT+AGG 0.534354 8_3:+52350851 None:intergenic
GATGCTCTAAATGGCATGCC+TGG 0.535325 8_3:-52345284 Msa1294520:three_prime_UTR
TTATTAGAAGAATCCCAAAC+CGG 0.537322 8_3:+52349645 None:intergenic
CACCGTCAGGTACTTGAGAC+AGG 0.538434 8_3:+52349730 None:intergenic
ACCGTTGTTGCTGTAGGCAA+CGG 0.538705 8_3:-52345320 Msa1294520:three_prime_UTR
GACAATGCAAAGACCAAGAC+CGG 0.538892 8_3:+52346797 None:intergenic
TTGTTGAATTTGTAAGTAGA+GGG 0.538960 8_3:+52349484 None:intergenic
GTACCTAGACAGTTGGCACT+TGG 0.544265 8_3:+52351830 None:intergenic
TGATGATGCTAACAAAGGAT+TGG 0.544299 8_3:-52344842 Msa1294520:three_prime_UTR
GAACAACTTGATCCTGTCAA+TGG 0.544898 8_3:-52349810 Msa1294520:CDS
ACACTAGTGTTATGGTTATG+TGG 0.546079 8_3:+52351868 None:intergenic
TCCTCTCAGAATAATGTGAC+CGG 0.546854 8_3:+52347479 None:intergenic
TGTAAGTAGAGGGTCATTTG+TGG 0.547760 8_3:+52349494 None:intergenic
TCACTATGGAAGCATCTGAA+TGG 0.547812 8_3:-52346114 Msa1294520:three_prime_UTR
AATGTTCCACATCCTCAAGA+TGG 0.547990 8_3:+52350266 None:intergenic
AATTTAGAATTCAGACCCTC+CGG 0.549015 8_3:+52346007 None:intergenic
ATGCCAAGTGCCAACTGTCT+AGG 0.549070 8_3:-52351833 Msa1294520:five_prime_UTR
TGAAAGAGCCTTCAAAACAT+TGG 0.549125 8_3:-52348506 Msa1294520:CDS
ACGTGGCTAAAGAAAACATA+CGG 0.549744 8_3:-52349402 Msa1294520:CDS
GCAAAAGGTGAAGATTCTAA+AGG 0.549796 8_3:-52345482 Msa1294520:three_prime_UTR
TTCTGCAACGTCCCATCTTG+AGG 0.550001 8_3:-52350278 Msa1294520:CDS
ACTTTGGAAGGGAACTTGAA+GGG 0.550352 8_3:-52347862 Msa1294520:CDS
AAGTTCATGAAGAGAATGCC+AGG 0.551847 8_3:-52349356 Msa1294520:CDS
GAAGTTGACGACACAGGCTG+TGG 0.553420 8_3:-52347306 Msa1294520:intron
ATTGACAGATGGAGTATCAA+AGG 0.553958 8_3:-52348425 Msa1294520:CDS
GGAGACAAACAAAGAGAAGA+GGG 0.554322 8_3:-52345605 Msa1294520:three_prime_UTR
AAGCAGATGCCAAAGATGGA+TGG 0.554555 8_3:-52345076 Msa1294520:intron
AATCCATGAGGGCTGTCACA+TGG 0.555825 8_3:-52350025 Msa1294520:CDS
TGTTGTTCTGTGGCATCCAC+AGG 0.556728 8_3:+52346327 None:intergenic
ATGATAATTGAAAAGGAGTG+TGG 0.557551 8_3:-52351963 Msa1294520:five_prime_UTR
GCTTCATGGCACGTTTCTGT+GGG 0.557558 8_3:-52349705 Msa1294520:CDS
ATGGAAGCATCTGAATGGAA+TGG 0.558044 8_3:-52346109 Msa1294520:three_prime_UTR
GGTCTCATTATATGAAAGAT+CGG 0.560737 8_3:+52349890 None:intergenic
TGCTTATTAGGATTAAGTAA+TGG 0.563159 8_3:-52345542 Msa1294520:three_prime_UTR
CATGCGACTAACTGCACCTG+TGG 0.564009 8_3:-52346343 Msa1294520:three_prime_UTR
TTTCACTGACACGAATTGCA+TGG 0.564466 8_3:+52351735 None:intergenic
AGGCAACGGACAACAGGCAG+TGG 0.565453 8_3:-52345306 Msa1294520:three_prime_UTR
AGATACAGCAGTAATTCAAA+GGG 0.566152 8_3:-52345375 Msa1294520:three_prime_UTR
TCGGGGAGATTCTGCGAGAG+TGG 0.566872 8_3:-52347673 Msa1294520:CDS
TGATAATTGAAAAGGAGTGT+GGG 0.568000 8_3:-52351962 Msa1294520:five_prime_UTR
TCTTCTTAACTTATGCCCAA+AGG 0.568433 8_3:-52351519 Msa1294520:intron
CAGGTACTTCTTGCACTGCA+TGG 0.569416 8_3:-52346187 Msa1294520:three_prime_UTR
TAAAGGTAGTGAAACAAGTA+GGG 0.570399 8_3:-52345465 Msa1294520:three_prime_UTR
GGCAGAATTTGACTTTGGAA+GGG 0.570782 8_3:-52347873 Msa1294520:CDS
ATTGTGTTTCTTTCAACACC+AGG 0.570876 8_3:+52345266 None:intergenic
CATGAAGAGAATGCCAGGCT+AGG 0.571449 8_3:-52349351 Msa1294520:CDS
ATGCTGATTTGTTTGCTCAA+AGG 0.572441 8_3:+52346922 None:intergenic
TCCGAATTGCTTCTGCTCCA+GGG 0.572483 8_3:+52347413 None:intergenic
AACGTCCCATCTTGAGGATG+TGG 0.573006 8_3:-52350272 Msa1294520:CDS
TCTAGAAGTATACATTCGTA+CGG 0.574242 8_3:+52344703 None:intergenic
ATAACTGTCAAGTATAGGAA+TGG 0.583037 8_3:-52349969 Msa1294520:CDS
AACAATGATGATGCTAACAA+AGG 0.583139 8_3:-52344847 Msa1294520:three_prime_UTR
AGGATTAAGTAATGGATACA+TGG 0.583551 8_3:-52345534 Msa1294520:three_prime_UTR
TCACCTCGAAGCAAGAAGAA+AGG 0.583647 8_3:-52348374 Msa1294520:CDS
ATGTTCCACATCCTCAAGAT+GGG 0.584461 8_3:+52350267 None:intergenic
AATCCGATTACTGCTGCCAT+CGG 0.585511 8_3:+52348176 None:intergenic
TGGAGACAAACAAAGAGAAG+AGG 0.586846 8_3:-52345606 Msa1294520:three_prime_UTR
TGTCTGAGATTGAGACAGAA+TGG 0.587464 8_3:+52351174 None:intergenic
TGAGCTGTAAGAGCGACGAT+TGG 0.588069 8_3:+52344998 None:intergenic
CGAAGCAAGAAGAAAGGCGG+AGG 0.588877 8_3:-52348368 Msa1294520:CDS
AAATAAGATTCATACCAGAA+AGG 0.590579 8_3:+52347783 None:intergenic
CTCTCGCGTAGTACTTGTGA+AGG 0.591922 8_3:+52345885 None:intergenic
TGGAAAACTTGTCCTAGAAG+AGG 0.595077 8_3:-52347894 Msa1294520:CDS
ATGTTGTGTACCTAGACAGT+TGG 0.598109 8_3:+52351823 None:intergenic
GTCACATTATTCTGAGAGGA+TGG 0.598173 8_3:-52347476 Msa1294520:CDS
TGAAGCCAAATGTTTAGAAG+TGG 0.598691 8_3:-52344960 Msa1294520:three_prime_UTR
AACCACGAAGACACTGTAGT+AGG 0.600067 8_3:+52350876 None:intergenic
GGAGCCACCGTTGTTGCTGT+AGG 0.600221 8_3:-52345326 Msa1294520:three_prime_UTR
TATGTATTTGACCTCTCAAG+AGG 0.601678 8_3:-52349535 Msa1294520:CDS
TTATAGGTTAATAAGATGGG+TGG 0.602754 8_3:-52346417 Msa1294520:intron
GTATACATTCGAAGTCATGT+TGG 0.607233 8_3:+52344775 None:intergenic
TGCCACTGGCTGAAGATACA+CGG 0.609481 8_3:-52346857 Msa1294520:three_prime_UTR
GGCCTGTCTCAAGTACCTGA+CGG 0.611371 8_3:-52349732 Msa1294520:CDS
TAACATCTTGGATATAAGCA+AGG 0.613751 8_3:-52348054 Msa1294520:intron
TGGTTTGAAGTTGACGACAC+AGG 0.613885 8_3:-52347312 Msa1294520:CDS
TCATCATTGTTAAGATGACA+AGG 0.613919 8_3:+52344859 None:intergenic
TCCGTTGCCTACAGCAACAA+CGG 0.614208 8_3:+52345319 None:intergenic
CTCGTCCAATACCGTAAAGA+CGG 0.614421 8_3:-52345834 Msa1294520:three_prime_UTR
GCTCACTTTCCAGCTCCGGA+GGG 0.614527 8_3:-52346022 Msa1294520:three_prime_UTR
CAAATGTTTAGAAGTGGGCA+TGG 0.615383 8_3:-52344954 Msa1294520:three_prime_UTR
GAGTATGTTATCAGAAGCCA+CGG 0.615717 8_3:-52350198 Msa1294520:CDS
GAAGCCAAATGTTTAGAAGT+GGG 0.619807 8_3:-52344959 Msa1294520:three_prime_UTR
GGTTATGTGGCTATTACTGT+GGG 0.621100 8_3:+52351881 None:intergenic
CTTGAGTGGCTTGGTTACCG+TGG 0.624316 8_3:+52350181 None:intergenic
TACAGCAGTAATTCAAAGGG+TGG 0.626931 8_3:-52345372 Msa1294520:three_prime_UTR
CTCCGTGTATCTTCAGCCAG+TGG 0.626933 8_3:+52346855 None:intergenic
CACTCAAGCAGAAAGAGTTG+AGG 0.627252 8_3:-52350166 Msa1294520:intron
ATACTCTGAATTTGGTACTG+TGG 0.629231 8_3:+52351936 None:intergenic
TTAGGATCAAGTCATATGAA+GGG 0.630200 8_3:+52345216 None:intergenic
ATAATCGCATTAGTGTTCCT+GGG 0.633707 8_3:+52346367 None:intergenic
TACCAAGAAAGCATATAATG+GGG 0.634950 8_3:-52348537 Msa1294520:CDS
GGCAATGCTGCTGAAAGTAA+CGG 0.637366 8_3:+52349666 None:intergenic
CGCAGATGTATGAATCCATG+AGG 0.637583 8_3:-52350037 Msa1294520:intron
TAAGAGCGACGATTGGAATG+TGG 0.639382 8_3:+52345005 None:intergenic
TGATAACGAAGTAATAAGAG+AGG 0.639587 8_3:-52349430 Msa1294520:CDS
GAACTAGTTGATAAGCATAG+TGG 0.639801 8_3:-52349561 Msa1294520:CDS
GTCTACTCACTATCCTAACA+TGG 0.643699 8_3:-52350365 Msa1294520:CDS
GATAACGAAGTAATAAGAGA+GGG 0.644016 8_3:-52349429 Msa1294520:CDS
ACACAGAATCCCATTTACTC+GGG 0.644528 8_3:+52347037 None:intergenic
GTAGATTAATTACATCCAAG+TGG 0.645554 8_3:-52346156 Msa1294520:three_prime_UTR
GATAATTGAAAAGGAGTGTG+GGG 0.646835 8_3:-52351961 Msa1294520:five_prime_UTR
ATGTATTTGACCTCTCAAGA+GGG 0.651272 8_3:-52349534 Msa1294520:CDS
AATGGAAAGAAGTCTCTCGA+AGG 0.654516 8_3:-52345419 Msa1294520:three_prime_UTR
AAGCAAATAGCCCTCTTGAG+AGG 0.654817 8_3:+52349524 None:intergenic
ACCAAGAAAGCATATAATGG+GGG 0.661897 8_3:-52348536 Msa1294520:CDS
CGTGGCTAAAGAAAACATAC+GGG 0.662683 8_3:-52349401 Msa1294520:CDS
GCCGGTCACATTATTCTGAG+AGG 0.668073 8_3:-52347480 Msa1294520:CDS
TCATGAACTGAGGACACCGA+TGG 0.669919 8_3:-52348192 Msa1294520:CDS
AATTCAGAGTATCCAAACAC+AGG 0.670137 8_3:-52351925 Msa1294520:five_prime_UTR
ACATTCGAAGTCATGTTGGG+AGG 0.683757 8_3:+52344779 None:intergenic
GTTGCAGAAGTTCATAACGC+AGG 0.686734 8_3:+52350292 None:intergenic
GACTTGACAATGTTGTTCTG+TGG 0.690481 8_3:+52346317 None:intergenic
GCAGATGTATGAATCCATGA+GGG 0.693241 8_3:-52350036 Msa1294520:intron
CCTCGAAGCAAGAAGAAAGG+CGG 0.694393 8_3:-52348371 Msa1294520:CDS
TGCATTACAGTCATGAACTG+AGG 0.713029 8_3:-52348202 Msa1294520:intron
GATATGCCAAAGCTAGTTCG+GGG 0.714157 8_3:-52347690 Msa1294520:CDS
AGGCAGAAGAAAATTCCACA+AGG 0.721322 8_3:-52350947 Msa1294520:CDS
ATTCAGTAAATGGAGCAATG+CGG 0.730319 8_3:+52348076 None:intergenic
TAATAAGAGAGGGAGCGACG+TGG 0.735133 8_3:-52349419 Msa1294520:CDS
GTTGCCTACAGCAACAACGG+TGG 0.757226 8_3:+52345322 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATGTATTTATACATTT+TGG - chr8_3:52347960-52347979 Msa1294520:intron 10.0%
!!! TCTTTTCATAGTATATTTTT+TGG - chr8_3:52344871-52344890 Msa1294520:three_prime_UTR 15.0%
!!! CTTTTCATAGTATATTTTTT+GGG - chr8_3:52344872-52344891 Msa1294520:three_prime_UTR 15.0%
!!! TGTTTTTTAATACTAATACT+TGG + chr8_3:52345203-52345222 None:intergenic 15.0%
!!! AAAACTTTGTTTAAATACTA+CGG + chr8_3:52345929-52345948 None:intergenic 15.0%
!!! AAATAAATAACCAATTTTGT+TGG - chr8_3:52346116-52346135 Msa1294520:three_prime_UTR 15.0%
!! AAAAAATAAGATCAAATGTA+AGG + chr8_3:52347312-52347331 None:intergenic 15.0%
!!! TAAAATTTTACGATGTTATA+TGG - chr8_3:52347342-52347361 Msa1294520:CDS 15.0%
!! AAATTTAAAGATTTGTCAAA+TGG - chr8_3:52348992-52349011 Msa1294520:intron 15.0%
!!! TTTTTCTAGAATAATTTTGT+TGG + chr8_3:52349281-52349300 None:intergenic 15.0%
!! TTATTATAGGTTAATAAGAT+GGG - chr8_3:52350136-52350155 Msa1294520:intron 15.0%
!!! TTATATTTTATAAGCTATAC+AGG + chr8_3:52351741-52351760 None:intergenic 15.0%
!! GTATAGCTTATAAAATATAA+AGG - chr8_3:52351741-52351760 Msa1294520:intron 15.0%
!! CTTGTGAATGAAAAAAATAT+GGG + chr8_3:52345079-52345098 None:intergenic 20.0%
!! TCTTGTGAATGAAAAAAATA+TGG + chr8_3:52345080-52345099 None:intergenic 20.0%
!! CAAAATTGTAACATCATATA+AGG + chr8_3:52345736-52345755 None:intergenic 20.0%
!! TTATTTATCTTCACAACAAA+GGG + chr8_3:52346102-52346121 None:intergenic 20.0%
!! TTTATTTATCTTCACAACAA+AGG + chr8_3:52346103-52346122 None:intergenic 20.0%
!! TAAATTCTAACTTATAGCAA+AGG + chr8_3:52346444-52346463 None:intergenic 20.0%
!! AATAAACCACTAAAAGAAAA+TGG + chr8_3:52346471-52346490 None:intergenic 20.0%
!!! TAGAAATATACTAGTTTGTT+TGG - chr8_3:52347570-52347589 Msa1294520:intron 20.0%
!!! AAATTTATAATTTGTGTCCT+GGG + chr8_3:52347914-52347933 None:intergenic 20.0%
!!! AAAATTTATAATTTGTGTCC+TGG + chr8_3:52347915-52347934 None:intergenic 20.0%
!!! ATGTATTTATACATTTTGGT+TGG - chr8_3:52347964-52347983 Msa1294520:intron 20.0%
!!! ACATTTTCTTATTTGAGTAA+CGG + chr8_3:52348456-52348475 None:intergenic 20.0%
!! CTAAAATAATTTCTACATTG+TGG + chr8_3:52348752-52348771 None:intergenic 20.0%
!!! TATTTTTGGTTGCATAATAT+AGG - chr8_3:52348791-52348810 Msa1294520:intron 20.0%
!! CTCTATGTAAGTAAAAAAAT+TGG - chr8_3:52348948-52348967 Msa1294520:intron 20.0%
!!! AGTAAAAAAATTGGTTCATT+AGG - chr8_3:52348957-52348976 Msa1294520:intron 20.0%
!! TATGAAAATCCAAATTCTTA+TGG - chr8_3:52349103-52349122 Msa1294520:intron 20.0%
!!! TTGATAACAAAATGATACTT+TGG - chr8_3:52349224-52349243 Msa1294520:intron 20.0%
!!! TTATTCTTTTGCAAATGAAA+CGG + chr8_3:52349814-52349833 None:intergenic 20.0%
!! AAAATTCTCTAGTTAGTTAA+AGG + chr8_3:52349864-52349883 None:intergenic 20.0%
!!! TTTTTGTCTTGTATAGTAAT+TGG - chr8_3:52349880-52349899 Msa1294520:CDS 20.0%
!! CATCTTATTAACCTATAATA+AGG + chr8_3:52350137-52350156 None:intergenic 20.0%
!! CTTATTATAGGTTAATAAGA+TGG - chr8_3:52350135-52350154 Msa1294520:intron 20.0%
!!! TTTTGCTAACAATAACTTAA+TGG - chr8_3:52350264-52350283 Msa1294520:CDS 20.0%
!! ACAAAAGAAAAATATGAAAG+AGG - chr8_3:52350848-52350867 Msa1294520:intron 20.0%
! AAAATCATACACTAGTGTTA+TGG + chr8_3:52344699-52344718 None:intergenic 25.0%
! ACAAGTTAAAGAGCTTAAAA+AGG - chr8_3:52344923-52344942 Msa1294520:three_prime_UTR 25.0%
!!! TATTTACTTCTAGAGTTAGT+TGG - chr8_3:52345162-52345181 Msa1294520:intron 25.0%
!! ACATAAAGAATTTTCACAAG+AGG + chr8_3:52345488-52345507 None:intergenic 25.0%
! TTATCTTCTTACATTAGTAC+CGG - chr8_3:52346049-52346068 Msa1294520:three_prime_UTR 25.0%
!! ACCAATTTTGTTGGATTAAT+CGG - chr8_3:52346125-52346144 Msa1294520:three_prime_UTR 25.0%
! ACCTACATATACCAAAATAA+TGG + chr8_3:52346151-52346170 None:intergenic 25.0%
!! TAGATTCCATTTTCTTTTAG+TGG - chr8_3:52346462-52346481 Msa1294520:intron 25.0%
! TTGTTGAATTTGTAAGTAGA+GGG + chr8_3:52347075-52347094 None:intergenic 25.0%
! TTTGTTGAATTTGTAAGTAG+AGG + chr8_3:52347076-52347095 None:intergenic 25.0%
! TCAAATAAGTCAACTTTAAC+CGG + chr8_3:52347379-52347398 None:intergenic 25.0%
! AATAAGCTGAAAACAGATTA+TGG + chr8_3:52347719-52347738 None:intergenic 25.0%
! TGAAAACATCTTATAGCTTA+TGG - chr8_3:52347764-52347783 Msa1294520:intron 25.0%
! GTATAATCTATAACCTTGTT+TGG + chr8_3:52347829-52347848 None:intergenic 25.0%
!! ATACCAAGAAAGCATATAAT+GGG - chr8_3:52348018-52348037 Msa1294520:intron 25.0%
! AAAAAATTAAGATACACCGA+TGG - chr8_3:52348281-52348300 Msa1294520:intron 25.0%
!! ATTACTTGACATTCTTTTGT+CGG - chr8_3:52348400-52348419 Msa1294520:CDS 25.0%
! TGCTTAGAGCAATTATTTAA+AGG - chr8_3:52348569-52348588 Msa1294520:intron 25.0%
! TATTTAAAGGAAAACGATTG+TGG - chr8_3:52348582-52348601 Msa1294520:intron 25.0%
! TCTAATATCTTATAGCACAT+AGG - chr8_3:52348632-52348651 Msa1294520:intron 25.0%
!!! GAAATTATTTTAGACCTTTC+TGG - chr8_3:52348759-52348778 Msa1294520:intron 25.0%
! AAATAAGATTCATACCAGAA+AGG + chr8_3:52348776-52348795 None:intergenic 25.0%
!!! TCTGGTATGAATCTTATTTT+TGG - chr8_3:52348777-52348796 Msa1294520:intron 25.0%
! TATTAGAAGTCTTCTTTGAA+TGG + chr8_3:52349204-52349223 None:intergenic 25.0%
!! GCAAAAGAAAAGATAGTTTT+AGG - chr8_3:52349315-52349334 Msa1294520:CDS 25.0%
!! GTTTTTCTTTTACCACAAAA+GGG + chr8_3:52349407-52349426 None:intergenic 25.0%
!! GTAAAAGAAAAACCAGTTTT+AGG - chr8_3:52349414-52349433 Msa1294520:CDS 25.0%
! ACTATGATTTATCCTAAAAC+TGG + chr8_3:52349429-52349448 None:intergenic 25.0%
! TGTAAAGCATAGACATAAAT+AGG - chr8_3:52349963-52349982 Msa1294520:CDS 25.0%
! TATGAGATTCATATCACTTT+AGG + chr8_3:52350102-52350121 None:intergenic 25.0%
! AGTGATATGAATCTCATATT+AGG - chr8_3:52350104-52350123 Msa1294520:intron 25.0%
! AGATATCAAGATTGTCAAAA+AGG - chr8_3:52350162-52350181 Msa1294520:intron 25.0%
!! ATATGACACTTCTTATTTCA+GGG + chr8_3:52350344-52350363 None:intergenic 25.0%
! TTCTAAATTCATTAGCATAC+AGG - chr8_3:52350563-52350582 Msa1294520:intron 25.0%
!! AGCAAAGATGATTCATATTT+TGG - chr8_3:52350794-52350813 Msa1294520:intron 25.0%
!!! TATTTTGGAAGATGTCATAA+AGG - chr8_3:52350809-52350828 Msa1294520:intron 25.0%
! TGCTTATTAGGATTAAGTAA+TGG - chr8_3:52351014-52351033 Msa1294520:CDS 25.0%
! TTTATTTCAACAAGAGCAAA+AGG - chr8_3:52351059-52351078 Msa1294520:five_prime_UTR 25.0%
! AACCATAATGCTTGAAAAAA+TGG - chr8_3:52351208-52351227 Msa1294520:five_prime_UTR 25.0%
! ACCATAATGCTTGAAAAAAT+GGG - chr8_3:52351209-52351228 Msa1294520:five_prime_UTR 25.0%
! GAAATAAGGAAATCAGAAAT+TGG - chr8_3:52351519-52351538 Msa1294520:intron 25.0%
!! ATTTAGTTCAAGAAAATTGC+TGG + chr8_3:52351926-52351945 None:intergenic 25.0%
! TGATAATTGAAAAGGAGTGT+GGG - chr8_3:52344594-52344613 Msa1294520:three_prime_UTR 30.0%
CTAGGTACACAACATATAAA+AGG - chr8_3:52344741-52344760 Msa1294520:three_prime_UTR 30.0%
AAAGTTATGGCATATTGCAT+TGG + chr8_3:52344773-52344792 None:intergenic 30.0%
AGGAAAGTGAAAGAAAGTTA+TGG + chr8_3:52344786-52344805 None:intergenic 30.0%
CATGGAAGATATGGAATTAT+AGG + chr8_3:52344806-52344825 None:intergenic 30.0%
! AAGAATTTTCACAAGAGGTT+TGG + chr8_3:52345483-52345502 None:intergenic 30.0%
AAGAAAAATAGCACACTAAC+AGG - chr8_3:52345589-52345608 Msa1294520:three_prime_UTR 30.0%
! ACTCATATTCGTTGATAAGT+GGG - chr8_3:52345871-52345890 Msa1294520:three_prime_UTR 30.0%
AATTGTTAGAACAGCAAATC+CGG + chr8_3:52346071-52346090 None:intergenic 30.0%
!!! GCCATTATTTTGGTATATGT+AGG - chr8_3:52346147-52346166 Msa1294520:three_prime_UTR 30.0%
AACCAAGTCTCTAAATAGTT+TGG - chr8_3:52346234-52346253 Msa1294520:intron 30.0%
ATAACTGTCAAGTATAGGAA+TGG - chr8_3:52346587-52346606 Msa1294520:intron 30.0%
GGTCTCATTATATGAAAGAT+CGG + chr8_3:52346669-52346688 None:intergenic 30.0%
TTCATATGCTGCAAATGAAT+TGG + chr8_3:52346690-52346709 None:intergenic 30.0%
AGCTATACTTATTGAGTCTT+CGG + chr8_3:52346804-52346823 None:intergenic 30.0%
TTATTAGAAGAATCCCAAAC+CGG + chr8_3:52346914-52346933 None:intergenic 30.0%
AAAGAAACCTGAGCTTAAAA+TGG - chr8_3:52347093-52347112 Msa1294520:intron 30.0%
! TGATAACGAAGTAATAAGAG+AGG - chr8_3:52347126-52347145 Msa1294520:intron 30.0%
GATAACGAAGTAATAAGAGA+GGG - chr8_3:52347127-52347146 Msa1294520:intron 30.0%
ATGAGTCAATGTAATATTGC+TGG + chr8_3:52347234-52347253 None:intergenic 30.0%
!!! AAGGAAGCTTTTTCAAGATT+AGG + chr8_3:52347261-52347280 None:intergenic 30.0%
AATCTTGAAAAAGCTTCCTT+TGG - chr8_3:52347261-52347280 Msa1294520:intron 30.0%
AGTGTCTTAAAATGTACCAA+AGG + chr8_3:52347280-52347299 None:intergenic 30.0%
GATGTTATATGGATGAGTAA+AGG - chr8_3:52347353-52347372 Msa1294520:CDS 30.0%
! AAGTTATTCTAGAGAGCTTA+TGG + chr8_3:52347493-52347512 None:intergenic 30.0%
! GATGTTTTCATAAGTTATCC+TGG + chr8_3:52347754-52347773 None:intergenic 30.0%
! CATACCAAGAAAGCATATAA+TGG - chr8_3:52348017-52348036 Msa1294520:intron 30.0%
! TACCAAGAAAGCATATAATG+GGG - chr8_3:52348019-52348038 Msa1294520:intron 30.0%
!! CAGAATAACCAATGTTTTGA+AGG + chr8_3:52348061-52348080 None:intergenic 30.0%
!! TGCATTTTGATATTGACAGA+TGG - chr8_3:52348120-52348139 Msa1294520:CDS 30.0%
ACCTCATATTTGCAAGAAAT+TGG + chr8_3:52348233-52348252 None:intergenic 30.0%
ATTTCTTGCAAATATGAGGT+TGG - chr8_3:52348233-52348252 Msa1294520:intron 30.0%
CCAAGATGTTATTCAGTAAA+TGG + chr8_3:52348493-52348512 None:intergenic 30.0%
CCATTTACTGAATAACATCT+TGG - chr8_3:52348490-52348509 Msa1294520:CDS 30.0%
TAACATCTTGGATATAAGCA+AGG - chr8_3:52348502-52348521 Msa1294520:CDS 30.0%
AATATCTTATAGCACATAGG+TGG - chr8_3:52348635-52348654 Msa1294520:intron 30.0%
CTAATCTTAACTCTGTCAAA+TGG - chr8_3:52349047-52349066 Msa1294520:intron 30.0%
TCACTATCACCATAAGAATT+TGG + chr8_3:52349115-52349134 None:intergenic 30.0%
!! TGATAGTGAAAATTTTACCC+TGG - chr8_3:52349126-52349145 Msa1294520:intron 30.0%
! TAGAAAAACTATCCCTTTTG+TGG - chr8_3:52349293-52349312 Msa1294520:intron 30.0%
! TCTTTTCTTTTGCCACAAAA+GGG + chr8_3:52349308-52349327 None:intergenic 30.0%
! ATCTTTTCTTTTGCCACAAA+AGG + chr8_3:52349309-52349328 None:intergenic 30.0%
TAGACTAGTGTCAAAAACAT+GGG + chr8_3:52349362-52349381 None:intergenic 30.0%
! ACTGAAAATTTTCCCTTTTG+TGG - chr8_3:52349392-52349411 Msa1294520:CDS 30.0%
! GGTTTTTCTTTTACCACAAA+AGG + chr8_3:52349408-52349427 None:intergenic 30.0%
! CTTAAACCTTTTCTCATTTC+AGG - chr8_3:52349726-52349745 Msa1294520:CDS 30.0%
TTGTCTTGTATAGTAATTGG+TGG - chr8_3:52349883-52349902 Msa1294520:CDS 30.0%
TGTCTTGTATAGTAATTGGT+GGG - chr8_3:52349884-52349903 Msa1294520:CDS 30.0%
!!! TGATCTTATTTTAGCGTAGT+AGG - chr8_3:52350029-52350048 Msa1294520:CDS 30.0%
TAGGCTTATCTCCTTATTAT+AGG - chr8_3:52350123-52350142 Msa1294520:intron 30.0%
TTATAGGTTAATAAGATGGG+TGG - chr8_3:52350139-52350158 Msa1294520:intron 30.0%
ATCAAGATTGTCAAAAAGGA+AGG - chr8_3:52350166-52350185 Msa1294520:intron 30.0%
! GATATGACACTTCTTATTTC+AGG + chr8_3:52350345-52350364 None:intergenic 30.0%
GTAGATTAATTACATCCAAG+TGG - chr8_3:52350400-52350419 Msa1294520:intron 30.0%
CAACAACAATGACAAATGTT+GGG + chr8_3:52350599-52350618 None:intergenic 30.0%
TCAACAACAATGACAAATGT+TGG + chr8_3:52350600-52350619 None:intergenic 30.0%
ATCATCTTTGCTTTGTAAAG+AGG + chr8_3:52350786-52350805 None:intergenic 30.0%
!!! CTAATAAGCAGTTACTTTTC+TGG + chr8_3:52351004-52351023 None:intergenic 30.0%
CAGAAAAGTAACTGCTTATT+AGG - chr8_3:52351002-52351021 Msa1294520:CDS 30.0%
!! AGGATTAAGTAATGGATACA+TGG - chr8_3:52351022-52351041 Msa1294520:CDS 30.0%
TAAAGGTAGTGAAACAAGTA+GGG - chr8_3:52351091-52351110 Msa1294520:five_prime_UTR 30.0%
AAGATACAGCAGTAATTCAA+AGG - chr8_3:52351180-52351199 Msa1294520:five_prime_UTR 30.0%
AGATACAGCAGTAATTCAAA+GGG - chr8_3:52351181-52351200 Msa1294520:five_prime_UTR 30.0%
!!! TCCCATTTTTTCAAGCATTA+TGG + chr8_3:52351213-52351232 None:intergenic 30.0%
TTAGGATCAAGTCATATGAA+GGG + chr8_3:52351343-52351362 None:intergenic 30.0%
ATTAGGATCAAGTCATATGA+AGG + chr8_3:52351344-52351363 None:intergenic 30.0%
TTCATATGACTTGATCCTAA+TGG - chr8_3:52351343-52351362 Msa1294520:five_prime_UTR 30.0%
! CTAAAGTGTTTATCCAAACA+AGG + chr8_3:52351422-52351441 None:intergenic 30.0%
ATGAGGCAACAAAAGAAATA+AGG - chr8_3:52351505-52351524 Msa1294520:five_prime_UTR 30.0%
TCATCATTGTTAAGATGACA+AGG + chr8_3:52351700-52351719 None:intergenic 30.0%
! AACAATGATGATGCTAACAA+AGG - chr8_3:52351709-52351728 Msa1294520:intron 30.0%
TATACATTCGAAGTCATGTT+GGG + chr8_3:52351783-52351802 None:intergenic 30.0%
CGGAAAAAATTGTTCAGAAT+CGG + chr8_3:52351836-52351855 None:intergenic 30.0%
! TCTAGAAGTATACATTCGTA+CGG + chr8_3:52351856-52351875 None:intergenic 30.0%
! GATAATTGAAAAGGAGTGTG+GGG - chr8_3:52344595-52344614 Msa1294520:three_prime_UTR 35.0%
ATACTCTGAATTTGGTACTG+TGG + chr8_3:52344623-52344642 None:intergenic 35.0%
GTGTTTGGATACTCTGAATT+TGG + chr8_3:52344631-52344650 None:intergenic 35.0%
! AATTCAGAGTATCCAAACAC+AGG - chr8_3:52344631-52344650 Msa1294520:three_prime_UTR 35.0%
AAAGAGAAACTTCCTGTGTT+TGG + chr8_3:52344646-52344665 None:intergenic 35.0%
ACACTAGTGTTATGGTTATG+TGG + chr8_3:52344691-52344710 None:intergenic 35.0%
TCTTCTTAACTTATGCCCAA+AGG - chr8_3:52345037-52345056 Msa1294520:three_prime_UTR 35.0%
CTTCTTAACTTATGCCCAAA+GGG - chr8_3:52345038-52345057 Msa1294520:three_prime_UTR 35.0%
!! AATGTTAACTTGTGCCCTTT+GGG + chr8_3:52345055-52345074 None:intergenic 35.0%
!! AAATGTTAACTTGTGCCCTT+TGG + chr8_3:52345056-52345075 None:intergenic 35.0%
! ATCTCAGACACAAGTTGAAT+TGG - chr8_3:52345395-52345414 Msa1294520:three_prime_UTR 35.0%
! ACCAGATTCAAGTTCTACTA+TGG - chr8_3:52345510-52345529 Msa1294520:three_prime_UTR 35.0%
!!! GCTATTTTTCTTCCAACAAG+TGG + chr8_3:52345581-52345600 None:intergenic 35.0%
AAGAAAATTCCACAAGGATG+TGG - chr8_3:52345615-52345634 Msa1294520:three_prime_UTR 35.0%
GACATTGAGTAGTTGAATAC+TGG + chr8_3:52345654-52345673 None:intergenic 35.0%
ATTAACTGACCATGATTGCT+AGG + chr8_3:52345708-52345727 None:intergenic 35.0%
TGTTAGCTGCAGTTACAATA+TGG - chr8_3:52345767-52345786 Msa1294520:three_prime_UTR 35.0%
TTGATACTAGAAAAGAGCCA+CGG - chr8_3:52345822-52345841 Msa1294520:three_prime_UTR 35.0%
! GACTCATATTCGTTGATAAG+TGG - chr8_3:52345870-52345889 Msa1294520:three_prime_UTR 35.0%
TGAGGATCAACTTTGTAAAC+TGG - chr8_3:52345902-52345921 Msa1294520:three_prime_UTR 35.0%
TATAGCAAACACTTCGTTGT+GGG - chr8_3:52345972-52345991 Msa1294520:three_prime_UTR 35.0%
GCCGATTAATCCAACAAAAT+TGG + chr8_3:52346129-52346148 None:intergenic 35.0%
! GGATTAATCGGCCATTATTT+TGG - chr8_3:52346137-52346156 Msa1294520:three_prime_UTR 35.0%
GTTATGCTAGCTATCTTGAT+TGG - chr8_3:52346169-52346188 Msa1294520:three_prime_UTR 35.0%
TCTTTGTGAAATGCCATGTT+AGG + chr8_3:52346207-52346226 None:intergenic 35.0%
AGCCAAACTATTTAGAGACT+TGG + chr8_3:52346239-52346258 None:intergenic 35.0%
ACTCGATAACTGTCAAGTAT+AGG - chr8_3:52346582-52346601 Msa1294520:intron 35.0%
TCAAGTCTCTATGAAATGCT+TGG + chr8_3:52346619-52346638 None:intergenic 35.0%
AGCATTTCATAGAGACTTGA+AGG - chr8_3:52346619-52346638 Msa1294520:intron 35.0%
GCTATACTTATTGAGTCTTC+GGG + chr8_3:52346803-52346822 None:intergenic 35.0%
GAAGACTCAATAAGTATAGC+TGG - chr8_3:52346803-52346822 Msa1294520:three_prime_UTR 35.0%
!! TAAAAGCATTGTTGCAGTTG+TGG - chr8_3:52346931-52346950 Msa1294520:three_prime_UTR 35.0%
!! AAAAGCATTGTTGCAGTTGT+GGG - chr8_3:52346932-52346951 Msa1294520:three_prime_UTR 35.0%
ACAACTGCACTTTATAGTGT+AGG - chr8_3:52346959-52346978 Msa1294520:three_prime_UTR 35.0%
CAACTGCACTTTATAGTGTA+GGG - chr8_3:52346960-52346979 Msa1294520:three_prime_UTR 35.0%
!! GAACTAGTTGATAAGCATAG+TGG - chr8_3:52346995-52347014 Msa1294520:CDS 35.0%
TATGTATTTGACCTCTCAAG+AGG - chr8_3:52347021-52347040 Msa1294520:CDS 35.0%
ATGTATTTGACCTCTCAAGA+GGG - chr8_3:52347022-52347041 Msa1294520:CDS 35.0%
ACGTGGCTAAAGAAAACATA+CGG - chr8_3:52347154-52347173 Msa1294520:intron 35.0%
TCTTCATGAACTTCATGACT+TGG + chr8_3:52347193-52347212 None:intergenic 35.0%
TTATATGGATGAGTAAAGGC+CGG - chr8_3:52347357-52347376 Msa1294520:CDS 35.0%
AGTCTGTTTGACAGAATTGA+TGG - chr8_3:52347425-52347444 Msa1294520:CDS 35.0%
! ACCAAGAAAGCATATAATGG+GGG - chr8_3:52348020-52348039 Msa1294520:intron 35.0%
TGAAAGAGCCTTCAAAACAT+TGG - chr8_3:52348050-52348069 Msa1294520:intron 35.0%
TCACTGTGTATTATCGTCAT+TGG - chr8_3:52348090-52348109 Msa1294520:CDS 35.0%
! ATTGACAGATGGAGTATCAA+AGG - chr8_3:52348131-52348150 Msa1294520:CDS 35.0%
GCCAATTTCTTGCAAATATG+AGG - chr8_3:52348229-52348248 Msa1294520:intron 35.0%
! GCTCTTCATAGCATTTTCTT+TGG - chr8_3:52348331-52348350 Msa1294520:CDS 35.0%
ATTCAGTAAATGGAGCAATG+CGG + chr8_3:52348483-52348502 None:intergenic 35.0%
GCAAGGTGATATATAAGCTA+AGG - chr8_3:52348519-52348538 Msa1294520:CDS 35.0%
GATGAGTAAGAAACTTGTAG+AGG + chr8_3:52348827-52348846 None:intergenic 35.0%
ATGATATGCCAAAGCTAGTT+CGG - chr8_3:52348864-52348883 Msa1294520:intron 35.0%
!! AGTTAAGATTAGCCTTCCAT+CGG + chr8_3:52349039-52349058 None:intergenic 35.0%
!! GTTCTCATGTTGCTTCATTT+TGG + chr8_3:52349182-52349201 None:intergenic 35.0%
CTAGACTAGTGTCAAAAACA+TGG + chr8_3:52349363-52349382 None:intergenic 35.0%
AACACAGAATCCCATTTACT+CGG + chr8_3:52349523-52349542 None:intergenic 35.0%
!! ATGCTGATTTGTTTGCTCAA+AGG + chr8_3:52349637-52349656 None:intergenic 35.0%
! GTGGCATTCAAAAGACTTTT+CGG + chr8_3:52349685-52349704 None:intergenic 35.0%
! AAAAGTCTTTTGAATGCCAC+TGG - chr8_3:52349685-52349704 Msa1294520:CDS 35.0%
CTTGGTGAGTAAGAATCTTA+GGG - chr8_3:52349787-52349806 Msa1294520:CDS 35.0%
ATAATCGCATTAGTGTTCCT+GGG + chr8_3:52350192-52350211 None:intergenic 35.0%
TATAATCGCATTAGTGTTCC+TGG + chr8_3:52350193-52350212 None:intergenic 35.0%
!! AAGAAGTGTCATATCAATGC+AGG - chr8_3:52350350-52350369 Msa1294520:CDS 35.0%
TCCAAGTGGTTACAGAAAAA+CGG - chr8_3:52350414-52350433 Msa1294520:intron 35.0%
! AATTTAGAATTCAGACCCTC+CGG + chr8_3:52350552-52350571 None:intergenic 35.0%
TAGACTTGAGCACAGATATA+TGG - chr8_3:52350631-52350650 Msa1294520:intron 35.0%
GAGAGTCTTGAGATTGAATA+TGG - chr8_3:52350882-52350901 Msa1294520:CDS 35.0%
! GGTTCTGACATATCTGAAAT+TGG - chr8_3:52350903-52350922 Msa1294520:CDS 35.0%
TCTAATCTTGTAACTGCCAA+TGG - chr8_3:52350930-52350949 Msa1294520:CDS 35.0%
! TTCTCTTTGTTTGTCTCCAT+TGG + chr8_3:52350949-52350968 None:intergenic 35.0%
GCAAAAGGTGAAGATTCTAA+AGG - chr8_3:52351074-52351093 Msa1294520:five_prime_UTR 35.0%
CTAAAGGTAGTGAAACAAGT+AGG - chr8_3:52351090-52351109 Msa1294520:five_prime_UTR 35.0%
GGTTCAAGTAAAGCTATGAA+TGG - chr8_3:52351119-52351138 Msa1294520:five_prime_UTR 35.0%
ATTGTGTTTCTTTCAACACC+AGG + chr8_3:52351293-52351312 None:intergenic 35.0%
GAATAGATTTGCACCTTGTT+TGG - chr8_3:52351406-52351425 Msa1294520:five_prime_UTR 35.0%
AATAAAGCAGATGCCAAAGA+TGG - chr8_3:52351476-52351495 Msa1294520:five_prime_UTR 35.0%
TGAAGCCAAATGTTTAGAAG+TGG - chr8_3:52351596-52351615 Msa1294520:intron 35.0%
GAAGCCAAATGTTTAGAAGT+GGG - chr8_3:52351597-52351616 Msa1294520:intron 35.0%
! ACCAATTGACTTTAAGCTGA+TGG - chr8_3:52351641-52351660 Msa1294520:intron 35.0%
TCCATCAGCTTAAAGTCAAT+TGG + chr8_3:52351645-52351664 None:intergenic 35.0%
TCTCTTTGTGAGTGAAAGAA+TGG + chr8_3:52351673-52351692 None:intergenic 35.0%
! TGATGATGCTAACAAAGGAT+TGG - chr8_3:52351714-52351733 Msa1294520:intron 35.0%
GTATACATTCGAAGTCATGT+TGG + chr8_3:52351784-52351803 None:intergenic 35.0%
GCTATTACTGTGGGAACAAT+AGG + chr8_3:52344669-52344688 None:intergenic 40.0%
GGTTATGTGGCTATTACTGT+GGG + chr8_3:52344678-52344697 None:intergenic 40.0%
TGGTTATGTGGCTATTACTG+TGG + chr8_3:52344679-52344698 None:intergenic 40.0%
ATGTTGTGTACCTAGACAGT+TGG + chr8_3:52344736-52344755 None:intergenic 40.0%
CACGAATTGCATGGAAGATA+TGG + chr8_3:52344815-52344834 None:intergenic 40.0%
TTTCACTGACACGAATTGCA+TGG + chr8_3:52344824-52344843 None:intergenic 40.0%
!! TTTAACTTGTGCCGCCTTAA+GGG + chr8_3:52344913-52344932 None:intergenic 40.0%
! TGTCTGAGATTGAGACAGAA+TGG + chr8_3:52345385-52345404 None:intergenic 40.0%
GCCATAGTAGAACTTGAATC+TGG + chr8_3:52345514-52345533 None:intergenic 40.0%
ATCAAAAACGTGCATGCACT+TGG + chr8_3:52345539-52345558 None:intergenic 40.0%
!! TTCTGTGTTTTGCCACTTGT+TGG - chr8_3:52345566-52345585 Msa1294520:three_prime_UTR 40.0%
AGGCAGAAGAAAATTCCACA+AGG - chr8_3:52345609-52345628 Msa1294520:three_prime_UTR 40.0%
! CTTCTTTTTCCACATCCTTG+TGG + chr8_3:52345627-52345646 None:intergenic 40.0%
AAAAGAGCCACGGTTATTGA+AGG - chr8_3:52345832-52345851 Msa1294520:three_prime_UTR 40.0%
CACTAATCCTTCAATAACCG+TGG + chr8_3:52345842-52345861 None:intergenic 40.0%
!! CACAACGAAGTGTTTGCTAT+AGG + chr8_3:52345973-52345992 None:intergenic 40.0%
CTATAGCAAACACTTCGTTG+TGG - chr8_3:52345971-52345990 Msa1294520:three_prime_UTR 40.0%
ATAGCAAACACTTCGTTGTG+GGG - chr8_3:52345973-52345992 Msa1294520:three_prime_UTR 40.0%
GTCTACTCACTATCCTAACA+TGG - chr8_3:52346191-52346210 Msa1294520:intron 40.0%
ATGTTCCACATCCTCAAGAT+GGG + chr8_3:52346292-52346311 None:intergenic 40.0%
AATGTTCCACATCCTCAAGA+TGG + chr8_3:52346293-52346312 None:intergenic 40.0%
GAGTATGTTATCAGAAGCCA+CGG - chr8_3:52346358-52346377 Msa1294520:three_prime_UTR 40.0%
ATACATCTGCGGGGAAAAAT+TGG + chr8_3:52346510-52346529 None:intergenic 40.0%
TCATGGATTCATACATCTGC+GGG + chr8_3:52346520-52346539 None:intergenic 40.0%
CTCATGGATTCATACATCTG+CGG + chr8_3:52346521-52346540 None:intergenic 40.0%
GCAGATGTATGAATCCATGA+GGG - chr8_3:52346520-52346539 Msa1294520:intron 40.0%
ATAGCAACAAGTCTGCGATT+TGG - chr8_3:52346717-52346736 Msa1294520:intron 40.0%
GAACAACTTGATCCTGTCAA+TGG - chr8_3:52346746-52346765 Msa1294520:intron 40.0%
TAGTGTAGGGCAGTTAATGA+AGG - chr8_3:52346973-52346992 Msa1294520:three_prime_UTR 40.0%
TGTAAGTAGAGGGTCATTTG+TGG + chr8_3:52347065-52347084 None:intergenic 40.0%
!! TCAACAGCCATTTTAAGCTC+AGG + chr8_3:52347103-52347122 None:intergenic 40.0%
CGTGGCTAAAGAAAACATAC+GGG - chr8_3:52347155-52347174 Msa1294520:intron 40.0%
! CATGAACTTCATGACTTGGA+GGG + chr8_3:52347189-52347208 None:intergenic 40.0%
! TCATGAACTTCATGACTTGG+AGG + chr8_3:52347190-52347209 None:intergenic 40.0%
AAGTTCATGAAGAGAATGCC+AGG - chr8_3:52347200-52347219 Msa1294520:intron 40.0%
ATCTACTTGCATGAGCACTT+TGG - chr8_3:52347611-52347630 Msa1294520:intron 40.0%
GAGCACTTATGAGACTGTTT+AGG - chr8_3:52347664-52347683 Msa1294520:CDS 40.0%
CTTATTTCAGTAAGCTCTCC+AGG - chr8_3:52347733-52347752 Msa1294520:intron 40.0%
! AAGCGCTGTTTATCCAAACA+AGG - chr8_3:52347813-52347832 Msa1294520:CDS 40.0%
TTGTTTATCCAAACAAGCCC+AGG - chr8_3:52347894-52347913 Msa1294520:CDS 40.0%
TCCCCCATTATATGCTTTCT+TGG + chr8_3:52348024-52348043 None:intergenic 40.0%
! AAGAAAGCATATAATGGGGG+AGG - chr8_3:52348023-52348042 Msa1294520:intron 40.0%
ACACGAAACTGTAATGCCAT+CGG + chr8_3:52348300-52348319 None:intergenic 40.0%
TGCATTACAGTCATGAACTG+AGG - chr8_3:52348354-52348373 Msa1294520:CDS 40.0%
TATAGCACATAGGTGGAATC+TGG - chr8_3:52348642-52348661 Msa1294520:intron 40.0%
TGGAAAACTTGTCCTAGAAG+AGG - chr8_3:52348662-52348681 Msa1294520:intron 40.0%
AGTCAAATTCTGCCTCTTCT+AGG + chr8_3:52348677-52348696 None:intergenic 40.0%
! GAAGAGGCAGAATTTGACTT+TGG - chr8_3:52348678-52348697 Msa1294520:intron 40.0%
! AGGCAGAATTTGACTTTGGA+AGG - chr8_3:52348682-52348701 Msa1294520:intron 40.0%
! GGCAGAATTTGACTTTGGAA+GGG - chr8_3:52348683-52348702 Msa1294520:intron 40.0%
! ACTTTGGAAGGGAACTTGAA+GGG - chr8_3:52348694-52348713 Msa1294520:intron 40.0%
TGATATGCCAAAGCTAGTTC+GGG - chr8_3:52348865-52348884 Msa1294520:intron 40.0%
!! ATTAAGCACTGAAACTCCGA+TGG - chr8_3:52349020-52349039 Msa1294520:intron 40.0%
TCTGTCAAATGGTTTACAGC+CGG - chr8_3:52349058-52349077 Msa1294520:intron 40.0%
TCCTCTCAGAATAATGTGAC+CGG + chr8_3:52349080-52349099 None:intergenic 40.0%
! GTCACATTATTCTGAGAGGA+TGG - chr8_3:52349080-52349099 Msa1294520:intron 40.0%
CATATCAACTGTGCATCTGT+AGG - chr8_3:52349490-52349509 Msa1294520:CDS 40.0%
!! TAGGTATTGACCCGAGTAAA+TGG - chr8_3:52349509-52349528 Msa1294520:CDS 40.0%
!! AGGTATTGACCCGAGTAAAT+GGG - chr8_3:52349510-52349529 Msa1294520:CDS 40.0%
ACACAGAATCCCATTTACTC+GGG + chr8_3:52349522-52349541 None:intergenic 40.0%
! ACCTTTTCTCATTTCAGGCA+CGG - chr8_3:52349731-52349750 Msa1294520:CDS 40.0%
TCTTTGCATTGTCAGATCCT+TGG - chr8_3:52349769-52349788 Msa1294520:CDS 40.0%
CCTAAGATTCTTACTCACCA+AGG + chr8_3:52349789-52349808 None:intergenic 40.0%
CCTTGGTGAGTAAGAATCTT+AGG - chr8_3:52349786-52349805 Msa1294520:CDS 40.0%
! ACTATTTGACAGAAGAGTGC+AGG - chr8_3:52349833-52349852 Msa1294520:CDS 40.0%
GACTTGACAATGTTGTTCTG+TGG + chr8_3:52350242-52350261 None:intergenic 40.0%
AATGGTGAGTAGTATCACCT+TGG - chr8_3:52350282-52350301 Msa1294520:CDS 40.0%
!! TCACTATGGAAGCATCTGAA+TGG - chr8_3:52350442-52350461 Msa1294520:intron 40.0%
!! ATGGAAGCATCTGAATGGAA+TGG - chr8_3:52350447-52350466 Msa1294520:intron 40.0%
TGGAGACAAACAAAGAGAAG+AGG - chr8_3:52350950-52350969 Msa1294520:CDS 40.0%
GGAGACAAACAAAGAGAAGA+GGG - chr8_3:52350951-52350970 Msa1294520:CDS 40.0%
!! CTTTTCTGGTATAGTGACGA+TGG + chr8_3:52350990-52351009 None:intergenic 40.0%
AGTGAAACAAGTAGGGTTAG+TGG - chr8_3:52351098-52351117 Msa1294520:five_prime_UTR 40.0%
AATGGAAAGAAGTCTCTCGA+AGG - chr8_3:52351137-52351156 Msa1294520:five_prime_UTR 40.0%
TACAGCAGTAATTCAAAGGG+TGG - chr8_3:52351184-52351203 Msa1294520:five_prime_UTR 40.0%
!! CTTGATCCTAATGGATTGTC+AGG - chr8_3:52351352-52351371 Msa1294520:five_prime_UTR 40.0%
CACATACCTGACAATCCATT+AGG + chr8_3:52351361-52351380 None:intergenic 40.0%
CATGCCCACTTCTAAACATT+TGG + chr8_3:52351604-52351623 None:intergenic 40.0%
CAAATGTTTAGAAGTGGGCA+TGG - chr8_3:52351602-52351621 Msa1294520:intron 40.0%
CATGTGAACTTGTGCCCTTA+AGG - chr8_3:52344896-52344915 Msa1294520:three_prime_UTR 45.0%
!! CTTTAACTTGTGCCGCCTTA+AGG + chr8_3:52344914-52344933 None:intergenic 45.0%
ATCCTACTACAGTGTCTTCG+TGG - chr8_3:52345678-52345697 Msa1294520:three_prime_UTR 45.0%
AACCACGAAGACACTGTAGT+AGG + chr8_3:52345683-52345702 None:intergenic 45.0%
GATAAGTGGGAAGACACTTG+AGG - chr8_3:52345884-52345903 Msa1294520:three_prime_UTR 45.0%
TAGCAAACACTTCGTTGTGG+GGG - chr8_3:52345974-52345993 Msa1294520:three_prime_UTR 45.0%
GTTGCAGAAGTTCATAACGC+AGG + chr8_3:52346267-52346286 None:intergenic 45.0%
CTCAACTCTTTCTGCTTGAG+TGG + chr8_3:52346392-52346411 None:intergenic 45.0%
CACTCAAGCAGAAAGAGTTG+AGG - chr8_3:52346390-52346409 Msa1294520:three_prime_UTR 45.0%
CATGGATTCATACATCTGCG+GGG + chr8_3:52346519-52346538 None:intergenic 45.0%
CGCAGATGTATGAATCCATG+AGG - chr8_3:52346519-52346538 Msa1294520:intron 45.0%
!! ACAAGTCTGCGATTTGGTAC+CGG - chr8_3:52346723-52346742 Msa1294520:intron 45.0%
! TGACAGGATCAAGTTGTTCC+CGG + chr8_3:52346745-52346764 None:intergenic 45.0%
! CCAATTTTCTCGCCATTGAC+AGG + chr8_3:52346761-52346780 None:intergenic 45.0%
CCTGTCAATGGCGAGAAAAT+TGG - chr8_3:52346758-52346777 Msa1294520:intron 45.0%
GGCAATGCTGCTGAAAGTAA+CGG + chr8_3:52346893-52346912 None:intergenic 45.0%
! GTTACTTTCAGCAGCATTGC+CGG - chr8_3:52346892-52346911 Msa1294520:three_prime_UTR 45.0%
AAGCAAATAGCCCTCTTGAG+AGG + chr8_3:52347035-52347054 None:intergenic 45.0%
! ATTTGTGTCCTGGGCTTGTT+TGG + chr8_3:52347905-52347924 None:intergenic 45.0%
TATTACACCCACCTGCACAA+AGG + chr8_3:52347995-52348014 None:intergenic 45.0%
TCACCTCGAAGCAAGAAGAA+AGG - chr8_3:52348182-52348201 Msa1294520:CDS 45.0%
AATCCGATTACTGCTGCCAT+CGG + chr8_3:52348383-52348402 None:intergenic 45.0%
! GACTTTGGAAGGGAACTTGA+AGG - chr8_3:52348693-52348712 Msa1294520:intron 45.0%
GATATGCCAAAGCTAGTTCG+GGG - chr8_3:52348866-52348885 Msa1294520:intron 45.0%
! TGGTTTGAAGTTGACGACAC+AGG - chr8_3:52349244-52349263 Msa1294520:intron 45.0%
TCCGTGCCTGAAATGAGAAA+AGG + chr8_3:52349735-52349754 None:intergenic 45.0%
! TTTTCTCATTTCAGGCACGG+AGG - chr8_3:52349734-52349753 Msa1294520:CDS 45.0%
GACAATGCAAAGACCAAGAC+CGG + chr8_3:52349762-52349781 None:intergenic 45.0%
ATTGTCAAAAAGGAAGGCCC+AGG - chr8_3:52350172-52350191 Msa1294520:CDS 45.0%
!!! GCCGTTTTTCTGTAACCACT+TGG + chr8_3:52350418-52350437 None:intergenic 45.0%
ACGCGAGAGCGAAATTTGTA+TGG - chr8_3:52350685-52350704 Msa1294520:intron 45.0%
! TTACGGTATTGGACGAGTCA+TGG + chr8_3:52350719-52350738 None:intergenic 45.0%
CTCGTCCAATACCGTAAAGA+CGG - chr8_3:52350722-52350741 Msa1294520:intron 45.0%
AAGCTCCGTCTTTACGGTAT+TGG + chr8_3:52350730-52350749 None:intergenic 45.0%
AGAAGTCTCTCGAAGGTTTG+AGG - chr8_3:52351144-52351163 Msa1294520:five_prime_UTR 45.0%
AAGCAGATGCCAAAGATGGA+TGG - chr8_3:52351480-52351499 Msa1294520:five_prime_UTR 45.0%
GCCAAAGATGGATGGATATG+AGG - chr8_3:52351488-52351507 Msa1294520:five_prime_UTR 45.0%
GCCTCATATCCATCCATCTT+TGG + chr8_3:52351492-52351511 None:intergenic 45.0%
TAAGAGCGACGATTGGAATG+TGG + chr8_3:52351554-52351573 None:intergenic 45.0%
ACATTCGAAGTCATGTTGGG+AGG + chr8_3:52351780-52351799 None:intergenic 45.0%
!!! TTTTTCTTTTATAAAATAAT+TGG + chr8_3:52349461-52349480 None:intergenic 5.0%
ATGCCAAGTGCCAACTGTCT+AGG - chr8_3:52344723-52344742 Msa1294520:three_prime_UTR 50.0%
GTACCTAGACAGTTGGCACT+TGG + chr8_3:52344729-52344748 None:intergenic 50.0%
GTGAACTTGTGCCCTTAAGG+CGG - chr8_3:52344899-52344918 Msa1294520:three_prime_UTR 50.0%
ACTTCGTTGTGGGGGATGTA+AGG - chr8_3:52345982-52346001 Msa1294520:three_prime_UTR 50.0%
GTGGGGGATGTAAGGACAAT+AGG - chr8_3:52345990-52346009 Msa1294520:three_prime_UTR 50.0%
TTCTGCAACGTCCCATCTTG+AGG - chr8_3:52346278-52346297 Msa1294520:intron 50.0%
AACGTCCCATCTTGAGGATG+TGG - chr8_3:52346284-52346303 Msa1294520:intron 50.0%
CTCTTTCTGCTTGAGTGGCT+TGG + chr8_3:52346387-52346406 None:intergenic 50.0%
AATCCATGAGGGCTGTCACA+TGG - chr8_3:52346531-52346550 Msa1294520:intron 50.0%
ATCCATGAGGGCTGTCACAT+GGG - chr8_3:52346532-52346551 Msa1294520:intron 50.0%
!! CAAGTCTGCGATTTGGTACC+GGG - chr8_3:52346724-52346743 Msa1294520:intron 50.0%
TACCTGACGGTGTAGCTTCA+TGG - chr8_3:52346837-52346856 Msa1294520:three_prime_UTR 50.0%
AGCTTCATGGCACGTTTCTG+TGG - chr8_3:52346850-52346869 Msa1294520:three_prime_UTR 50.0%
GCTTCATGGCACGTTTCTGT+GGG - chr8_3:52346851-52346870 Msa1294520:three_prime_UTR 50.0%
! TTTCAGCAGCATTGCCGGTT+TGG - chr8_3:52346897-52346916 Msa1294520:three_prime_UTR 50.0%
!! TTCAGCAGCATTGCCGGTTT+GGG - chr8_3:52346898-52346917 Msa1294520:three_prime_UTR 50.0%
TAATAAGAGAGGGAGCGACG+TGG - chr8_3:52347137-52347156 Msa1294520:intron 50.0%
CATGAAGAGAATGCCAGGCT+AGG - chr8_3:52347205-52347224 Msa1294520:intron 50.0%
ATATTGCTGGTGACCTAGCC+TGG + chr8_3:52347221-52347240 None:intergenic 50.0%
!! GGTTGGCTTAACCTTTGTGC+AGG - chr8_3:52347981-52348000 Msa1294520:intron 50.0%
TGGCTTAACCTTTGTGCAGG+TGG - chr8_3:52347984-52348003 Msa1294520:intron 50.0%
GGCTTAACCTTTGTGCAGGT+GGG - chr8_3:52347985-52348004 Msa1294520:intron 50.0%
CCTCGAAGCAAGAAGAAAGG+CGG - chr8_3:52348185-52348204 Msa1294520:CDS 50.0%
TCATGAACTGAGGACACCGA+TGG - chr8_3:52348364-52348383 Msa1294520:CDS 50.0%
ACACCGATGGCAGCAGTAAT+CGG - chr8_3:52348377-52348396 Msa1294520:CDS 50.0%
! GAATCTCCCCGAACTAGCTT+TGG + chr8_3:52348875-52348894 None:intergenic 50.0%
! AGCACTGAAACTCCGATGGA+AGG - chr8_3:52349024-52349043 Msa1294520:intron 50.0%
GCCGGTCACATTATTCTGAG+AGG - chr8_3:52349076-52349095 Msa1294520:intron 50.0%
ACCCTGGAGCAGAAGCAATT+CGG - chr8_3:52349142-52349161 Msa1294520:intron 50.0%
TCCGAATTGCTTCTGCTCCA+GGG + chr8_3:52349146-52349165 None:intergenic 50.0%
ATCCGAATTGCTTCTGCTCC+AGG + chr8_3:52349147-52349166 None:intergenic 50.0%
! TGCCACTGGCTGAAGATACA+CGG - chr8_3:52349699-52349718 Msa1294520:CDS 50.0%
TGTTGTTCTGTGGCATCCAC+AGG + chr8_3:52350232-52350251 None:intergenic 50.0%
GTGAACTCAGTGCAGTTCCA+AGG + chr8_3:52350302-52350321 None:intergenic 50.0%
CAGGTACTTCTTGCACTGCA+TGG - chr8_3:52350369-52350388 Msa1294520:CDS 50.0%
GTGGTTACAGAAAAACGGCG+TGG - chr8_3:52350419-52350438 Msa1294520:intron 50.0%
GAAAAACGGCGTGGTCACTA+TGG - chr8_3:52350428-52350447 Msa1294520:intron 50.0%
TGATGCTCACTTTCCAGCTC+CGG - chr8_3:52350530-52350549 Msa1294520:intron 50.0%
CTCTCGCGTAGTACTTGTGA+AGG + chr8_3:52350674-52350693 None:intergenic 50.0%
CTTGCGAAGCTCCGTCTTTA+CGG + chr8_3:52350736-52350755 None:intergenic 50.0%
AAGACGGAGCTTCGCAAGAA+AGG - chr8_3:52350738-52350757 Msa1294520:intron 50.0%
ACCGTTGTTGCTGTAGGCAA+CGG - chr8_3:52351236-52351255 Msa1294520:five_prime_UTR 50.0%
TCCGTTGCCTACAGCAACAA+CGG + chr8_3:52351240-52351259 None:intergenic 50.0%
! CAGGCAGTGGATGCTCTAAA+TGG - chr8_3:52351263-52351282 Msa1294520:five_prime_UTR 50.0%
! GATGCTCTAAATGGCATGCC+TGG - chr8_3:52351272-52351291 Msa1294520:five_prime_UTR 50.0%
TGAGCTGTAAGAGCGACGAT+TGG + chr8_3:52351561-52351580 None:intergenic 50.0%
CGTGGTTCGCCTAGCAATCA+TGG - chr8_3:52345696-52345715 Msa1294520:three_prime_UTR 55.0%
!! CTTGAGTGGCTTGGTTACCG+TGG + chr8_3:52346378-52346397 None:intergenic 55.0%
GGCCTGTCTCAAGTACCTGA+CGG - chr8_3:52346824-52346843 Msa1294520:three_prime_UTR 55.0%
CACCGTCAGGTACTTGAGAC+AGG + chr8_3:52346829-52346848 None:intergenic 55.0%
TGCCATGAAGCTACACCGTC+AGG + chr8_3:52346842-52346861 None:intergenic 55.0%
CCGCCTTTCTTCTTGCTTCG+AGG + chr8_3:52348188-52348207 None:intergenic 55.0%
CGAAGCAAGAAGAAAGGCGG+AGG - chr8_3:52348188-52348207 Msa1294520:CDS 55.0%
GAAGTTGACGACACAGGCTG+TGG - chr8_3:52349250-52349269 Msa1294520:intron 55.0%
CTCCGTGTATCTTCAGCCAG+TGG + chr8_3:52349704-52349723 None:intergenic 55.0%
CATGCGACTAACTGCACCTG+TGG - chr8_3:52350213-52350232 Msa1294520:CDS 55.0%
GTTGCCTACAGCAACAACGG+TGG + chr8_3:52351237-52351256 None:intergenic 55.0%
TGCTGTAGGCAACGGACAAC+AGG - chr8_3:52351244-52351263 Msa1294520:five_prime_UTR 55.0%
TGCCCATGTGACAGCCCTCA+TGG + chr8_3:52346537-52346556 None:intergenic 60.0%
TCGGGGAGATTCTGCGAGAG+TGG - chr8_3:52348883-52348902 Msa1294520:intron 60.0%
! CATTTCAGGCACGGAGGCAC+CGG - chr8_3:52349740-52349759 Msa1294520:CDS 60.0%
TGCTCACTTTCCAGCTCCGG+AGG - chr8_3:52350533-52350552 Msa1294520:intron 60.0%
GCTCACTTTCCAGCTCCGGA+GGG - chr8_3:52350534-52350553 Msa1294520:intron 60.0%
GAATTCAGACCCTCCGGAGC+TGG + chr8_3:52350546-52350565 None:intergenic 60.0%
GGAGCCACCGTTGTTGCTGT+AGG - chr8_3:52351230-52351249 Msa1294520:five_prime_UTR 60.0%
AGGCAACGGACAACAGGCAG+TGG - chr8_3:52351250-52351269 Msa1294520:five_prime_UTR 60.0%
!! AGGCACGGAGGCACCGGTCT+TGG - chr8_3:52349746-52349765 Msa1294520:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 52344594 52351984 52344594 ID=Msa1294520;Name=Msa1294520
chr8_3 mRNA 52344594 52351984 52344594 ID=Msa1294520-mRNA-1;Parent=Msa1294520;Name=Msa1294520-mRNA-1;_AED=0.11;_eAED=0.11;_QI=722|1|1|1|0.91|0.76|13|1847|694
chr8_3 exon 52344594 52345092 52344594 ID=Msa1294520-mRNA-1:exon:14843;Parent=Msa1294520-mRNA-1
chr8_3 exon 52345205 52346206 52345205 ID=Msa1294520-mRNA-1:exon:14842;Parent=Msa1294520-mRNA-1
chr8_3 exon 52346293 52346433 52346293 ID=Msa1294520-mRNA-1:exon:14841;Parent=Msa1294520-mRNA-1
chr8_3 exon 52346788 52347066 52346788 ID=Msa1294520-mRNA-1:exon:14840;Parent=Msa1294520-mRNA-1
chr8_3 exon 52347307 52347501 52347307 ID=Msa1294520-mRNA-1:exon:14839;Parent=Msa1294520-mRNA-1
chr8_3 exon 52347625 52347714 52347625 ID=Msa1294520-mRNA-1:exon:14838;Parent=Msa1294520-mRNA-1
chr8_3 exon 52347798 52347924 52347798 ID=Msa1294520-mRNA-1:exon:14837;Parent=Msa1294520-mRNA-1
chr8_3 exon 52348055 52348214 52348055 ID=Msa1294520-mRNA-1:exon:14836;Parent=Msa1294520-mRNA-1
chr8_3 exon 52348328 52348575 52348328 ID=Msa1294520-mRNA-1:exon:14835;Parent=Msa1294520-mRNA-1
chr8_3 exon 52349296 52350054 52349296 ID=Msa1294520-mRNA-1:exon:14834;Parent=Msa1294520-mRNA-1
chr8_3 exon 52350167 52350409 52350167 ID=Msa1294520-mRNA-1:exon:14833;Parent=Msa1294520-mRNA-1
chr8_3 exon 52350861 52351531 52350861 ID=Msa1294520-mRNA-1:exon:14832;Parent=Msa1294520-mRNA-1
chr8_3 exon 52351745 52351984 52351745 ID=Msa1294520-mRNA-1:exon:14831;Parent=Msa1294520-mRNA-1
chr8_3 five_prime_UTR 52351745 52351984 52351745 ID=Msa1294520-mRNA-1:five_prime_utr;Parent=Msa1294520-mRNA-1
chr8_3 five_prime_UTR 52351050 52351531 52351050 ID=Msa1294520-mRNA-1:five_prime_utr;Parent=Msa1294520-mRNA-1
chr8_3 CDS 52350861 52351049 52350861 ID=Msa1294520-mRNA-1:cds;Parent=Msa1294520-mRNA-1
chr8_3 CDS 52350167 52350409 52350167 ID=Msa1294520-mRNA-1:cds;Parent=Msa1294520-mRNA-1
chr8_3 CDS 52349296 52350054 52349296 ID=Msa1294520-mRNA-1:cds;Parent=Msa1294520-mRNA-1
chr8_3 CDS 52348328 52348575 52348328 ID=Msa1294520-mRNA-1:cds;Parent=Msa1294520-mRNA-1
chr8_3 CDS 52348055 52348214 52348055 ID=Msa1294520-mRNA-1:cds;Parent=Msa1294520-mRNA-1
chr8_3 CDS 52347798 52347924 52347798 ID=Msa1294520-mRNA-1:cds;Parent=Msa1294520-mRNA-1
chr8_3 CDS 52347625 52347714 52347625 ID=Msa1294520-mRNA-1:cds;Parent=Msa1294520-mRNA-1
chr8_3 CDS 52347307 52347501 52347307 ID=Msa1294520-mRNA-1:cds;Parent=Msa1294520-mRNA-1
chr8_3 CDS 52346993 52347066 52346993 ID=Msa1294520-mRNA-1:cds;Parent=Msa1294520-mRNA-1
chr8_3 three_prime_UTR 52346788 52346992 52346788 ID=Msa1294520-mRNA-1:three_prime_utr;Parent=Msa1294520-mRNA-1
chr8_3 three_prime_UTR 52346293 52346433 52346293 ID=Msa1294520-mRNA-1:three_prime_utr;Parent=Msa1294520-mRNA-1
chr8_3 three_prime_UTR 52345205 52346206 52345205 ID=Msa1294520-mRNA-1:three_prime_utr;Parent=Msa1294520-mRNA-1
chr8_3 three_prime_UTR 52344594 52345092 52344594 ID=Msa1294520-mRNA-1:three_prime_utr;Parent=Msa1294520-mRNA-1
Gene Sequence

>Msa1294520

ATGGCTACCAAGTGCATGCACGTTTTTGATAGATTGCTTCTGTGTTTTGCCACTTGTTGGAAGAAAAATAGCACACTAACAGGCAGAAGAAAATTCCACAAGGATGTGGAAAAAGAAGAATTCCAGTATTCAACTACTCAATGTCTCTCATCCTACTACAGTGTCTTCGTGGTTCGCCTAGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTACTCACTATCCTAACATGGCATTTCACAAAGATTTATACAACCAAGTCTCTAAATAGTTTGGCTTACGACCTGCGTTATGAACTTCTGCAACGTCCCATCTTGAGGATGTGGAACATTTTGAACTCTACTGCTGAAATCACAACTGCTCAAGTTAAGTTGTCTGAGTATGTTATCAGAAGCCACGGTAACCAAGCCACTCAAGCAGAAAGAGTTGAGATGTATGAATCCATGAGGGCTGTCACATGGGCACTATTTGCTAGTCGAAAAGCTCTCAACTCGATAACTGTCAAGTATAGGAATGGTTTTGTCCAAGCATTTCATAGAGACTTGAAGGATAATAATATTTTTTACATCTACACCGATCTTTCATATAATGAGACCAATTCATTTGCAGCATATGAAGACACTCATAGCAACAAGTCTGCGATTTGGTACCGGGAACAACTTGATCCTGTCAATGGCGAGAAAATTGGAAAAGCAATGAAGATTGCACCCGAAGACTCAATAAGTATAGCTGGCCTGTCTCAAGTACCTGACGGTGTAGCTTCATGGCACGTTTCTGTGGGCAAGTTTACAGATTCACCGTTACTTTCAGCAGCATTGCCGGTTTGGGATTCTTCTAATAAAAGCATTGTTGCAGTTGTGGGAGTTACAACTGCACTTTATAGTGTAGGGCAGTTAATGAAGGAACTAGTTGATAAGCATAGTGGTCATATGTATTTGACCTCTCAAGAGGGCTATTTGCTTGCAACTTCCACAAATGACCCTCTACTTACAAATTCAACAAAGAAACCTGAGCTTAAAATGGCTGTTGACTGTGATAACGAAGTAATAAGAGAGGGAGCGACGTGGCTAAAGAAAACATACGGGAACAATTTCCCTCCAAGTCATGAAGTTCATGAAGAGAATGCCAGGCTAGGTCACCAGCAATATTACATTGACTCATTCTTCCTAATCTTGAAAAAGCTTCCTTTGGTGGGTGTAATAATCATACCAAGAAAGCATATAATGGGGGAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCACTGTGTATTATCGTCATTGGATGTGTTTGCATTTTGATATTGACAGATGGAGTATCAAAGGAAATGAATCTAAGAGCAGAATTAATCAGTCACCTCGAAGCAAGAAGAAAGGCGGAGGCATCGAGCAACTATAAAAGCCAATTTCTTGCAAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATCGGATTACTTGACATTCTTTTGTCGGATGATCATCTCACAAATGAACAATGTGCAACCGTTACTCAAATAAGAAAATGTTCAACCGCATTGCTCCATTTACTGAATAACATCTTGGATATAAGCAAGGTGGAATCTGGAAAACTTGTCCTAGAAGAGGCAGAATTTGACTTTGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAATGTAGAAATTATTTTAGACCTTTCTGATGATATGCCAAAGCTAGTTCGGGGAGATTCTGCGAGAGTGGTTCAAATTTTTGCAAATTTGATCAATAACTCAATCAAATTTACTCTATCCGGTCACATTATTCTGAGAGGATGGTATGAAAATCCAAATTCTTATGGTGATAGTGAAAATTTTACCCTGGAGCAGAAGCAATTCGGATGTTCTTCGAAGACCAAAATGAAGCAACATGAGAACCATTCAAAGAAGACTTCTAATATTGATAACAAAATGATACTTTGGTTTGAAGTTGACGACACAGGCTGTGGTATTGACCCGAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCTATCAACTACTAGACTGTAA
Protein sequence

>Msa1294520

MATKCMHVFDRLLLCFATCWKKNSTLTGRRKFHKDVEKEEFQYSTTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRSHGNQATQAERVEMYESMRAVTWALFASRKALNSITVKYRNGFVQAFHRDLKDNNIFYIYTDLSYNETNSFAAYEDTHSNKSAIWYREQLDPVNGEKIGKAMKIAPEDSISIAGLSQVPDGVASWHVSVGKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVDKHSGHMYLTSQEGYLLATSTNDPLLTNSTKKPELKMAVDCDNEVIREGATWLKKTYGNNFPPSHEVHEENARLGHQQYYIDSFFLILKKLPLVGVIIIPRKHIMGEADERAFKTLVILISASLCIIVIGCVCILILTDGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDHLTNEQCATVTQIRKCSTALLHLLNNILDISKVESGKLVLEEAEFDFGRELEGLVDMFSVQCINHNVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWYENPNSYGDSENFTLEQKQFGCSSKTKMKQHENHSKKTSNIDNKMILWFEVDDTGCGIDPSKWDSVFESFEQADLSTTRL*