AlfalfaGEDB | Msa0719550

M. sativa cultivar zhongmu-4 / Msa0719550

KEGG: K17498
GO: GO:0000414 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010793 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031056 GO:0031060 GO:0031323 GO:0031326 GO:0031399 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032386 GO:0032784 GO:0032870 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0033157 GO:0033993 GO:0035065 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046822 GO:0046825 GO:0046831 GO:0048545 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0051716 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090087 GO:0090239 GO:1901700 GO:1901701 GO:1901983 GO:1902275 GO:1903311 GO:1903506 GO:1903827 GO:2000112 GO:2000197 GO:2000756 GO:2001141 GO:2001253
PFAM: PF08711.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719550	XP_003612709.1	96.774	496	6	1	1	486	1	496	0.0	958

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719550	sp\|F4ICK8\|IWS1_ARATH	62.963	513	152	11	1	486	1	502	0.0	569

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719550	G7K9K8	96.774	496	6	1	1	486	1	496	0.0	958

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TFs/TRs:

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Gene ID	Type	Classification
Msa0719550	TR	IWS1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0257490	Msa0719550	0.824648	7.201781e-54	-8.615850e-47
Msa0719550	Msa0974950	0.800955	1.130226e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719550	MtrunA17_Chr5g0410141	96.774	496	6	1	1	486	1	496	0.0	958

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719550	AT1G32130.1	62.963	513	152	11	1	486	1	502	0.0	569
Msa0719550	AT1G32130.2	61.988	513	148	12	1	486	1	493	0.0	550
Msa0719550	AT4G19000.1	41.124	445	190	14	58	486	25	413	2.23e-80	256

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Find 175 sgRNAs with CRISPR-Local

Find 555 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGGAATGATCGTGA+AGG	0.734592	5_1:+14925761	Msa0719550:CDS
AAACTGAGTGTGGAAGGTCG+TGG	0.635870	5_1:+14931160	Msa0719550:CDS
AAAGTAAAGCCACTGTACAT+TGG	0.521072	5_1:+14931433	Msa0719550:three_prime_UTR
AAATCCAAAGGTGTGGCTTC+TGG	0.295709	5_1:-14929960	None:intergenic
AAGAAGGAGAAGAGGCTGAA+AGG	0.431465	5_1:+14925674	Msa0719550:CDS
AAGAGAAAGAAGGGGAAGGA+AGG	0.391868	5_1:+14925641	Msa0719550:CDS
AAGAGACGGTGATCTTGATT+TGG	0.370436	5_1:+14929788	Msa0719550:CDS
AAGGAGAAGAGGCTGAAAGG+GGG	0.577876	5_1:+14925677	Msa0719550:CDS
AAGGCCAGAAGCCACACCTT+TGG	0.425652	5_1:+14929956	Msa0719550:CDS
AAGGGAGGAAGAGAAAGAAG+GGG	0.574712	5_1:+14925633	Msa0719550:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTTATTAGAACTAGGAGC+GGG	-	chr5_1:14925194-14925213	None:intergenic	30.0%
TGAATTGAATCGAATCGAAT+CGG	-	chr5_1:14925327-14925346	None:intergenic	30.0%
TAAACACTTGTGAGATAGTT+TGG	+	chr5_1:14926086-14926105	Msa0719550:intron	30.0%
AAACACTTGTGAGATAGTTT+GGG	+	chr5_1:14926087-14926106	Msa0719550:intron	30.0%
ATAGAAATTAGATGAGGATG+AGG	+	chr5_1:14926243-14926262	Msa0719550:intron	30.0%
TTGATCTACTCTTCTTACAA+CGG	-	chr5_1:14926417-14926436	None:intergenic	30.0%
TGTAAGAAGAGTAGATCAAA+TGG	+	chr5_1:14926418-14926437	Msa0719550:intron	30.0%
AACCATTCGAAAAGATTTAG+AGG	+	chr5_1:14926493-14926512	Msa0719550:intron	30.0%
GATAACTTTATAGATGACAC+TGG	+	chr5_1:14926955-14926974	Msa0719550:CDS	30.0%
CTCATTTGAAGAACTTGAAA+TGG	-	chr5_1:14927113-14927132	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	14925137	14931592	14925137	ID=Msa0719550;Name=Msa0719550
chr5_1	mRNA	14925137	14931592	14925137	ID=Msa0719550-mRNA-1;Parent=Msa0719550;Name=Msa0719550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=119\|0.9\|0.90\|1\|1\|1\|11\|391\|486
chr5_1	exon	14925137	14925275	14925137	ID=Msa0719550-mRNA-1:exon:5761;Parent=Msa0719550-mRNA-1
chr5_1	exon	14925367	14925826	14925367	ID=Msa0719550-mRNA-1:exon:5762;Parent=Msa0719550-mRNA-1
chr5_1	exon	14926922	14927035	14926922	ID=Msa0719550-mRNA-1:exon:5763;Parent=Msa0719550-mRNA-1
chr5_1	exon	14927299	14927489	14927299	ID=Msa0719550-mRNA-1:exon:5764;Parent=Msa0719550-mRNA-1
chr5_1	exon	14928828	14928957	14928828	ID=Msa0719550-mRNA-1:exon:5765;Parent=Msa0719550-mRNA-1
chr5_1	exon	14929047	14929109	14929047	ID=Msa0719550-mRNA-1:exon:5766;Parent=Msa0719550-mRNA-1
chr5_1	exon	14929221	14929298	14929221	ID=Msa0719550-mRNA-1:exon:5767;Parent=Msa0719550-mRNA-1
chr5_1	exon	14929569	14929660	14929569	ID=Msa0719550-mRNA-1:exon:5768;Parent=Msa0719550-mRNA-1
chr5_1	exon	14929758	14929820	14929758	ID=Msa0719550-mRNA-1:exon:5769;Parent=Msa0719550-mRNA-1
chr5_1	exon	14929917	14930067	14929917	ID=Msa0719550-mRNA-1:exon:5770;Parent=Msa0719550-mRNA-1
chr5_1	exon	14931103	14931592	14931103	ID=Msa0719550-mRNA-1:exon:5771;Parent=Msa0719550-mRNA-1
chr5_1	five_prime_UTR	14925137	14925255	14925137	ID=Msa0719550-mRNA-1:five_prime_utr;Parent=Msa0719550-mRNA-1
chr5_1	CDS	14925256	14925275	14925256	ID=Msa0719550-mRNA-1:cds;Parent=Msa0719550-mRNA-1
chr5_1	CDS	14925367	14925826	14925367	ID=Msa0719550-mRNA-1:cds;Parent=Msa0719550-mRNA-1
chr5_1	CDS	14926922	14927035	14926922	ID=Msa0719550-mRNA-1:cds;Parent=Msa0719550-mRNA-1
chr5_1	CDS	14927299	14927489	14927299	ID=Msa0719550-mRNA-1:cds;Parent=Msa0719550-mRNA-1
chr5_1	CDS	14928828	14928957	14928828	ID=Msa0719550-mRNA-1:cds;Parent=Msa0719550-mRNA-1
chr5_1	CDS	14929047	14929109	14929047	ID=Msa0719550-mRNA-1:cds;Parent=Msa0719550-mRNA-1
chr5_1	CDS	14929221	14929298	14929221	ID=Msa0719550-mRNA-1:cds;Parent=Msa0719550-mRNA-1
chr5_1	CDS	14929569	14929660	14929569	ID=Msa0719550-mRNA-1:cds;Parent=Msa0719550-mRNA-1
chr5_1	CDS	14929758	14929820	14929758	ID=Msa0719550-mRNA-1:cds;Parent=Msa0719550-mRNA-1
chr5_1	CDS	14929917	14930067	14929917	ID=Msa0719550-mRNA-1:cds;Parent=Msa0719550-mRNA-1
chr5_1	CDS	14931103	14931201	14931103	ID=Msa0719550-mRNA-1:cds;Parent=Msa0719550-mRNA-1
chr5_1	three_prime_UTR	14931202	14931592	14931202	ID=Msa0719550-mRNA-1:three_prime_utr;Parent=Msa0719550-mRNA-1

Gene Sequence

>Msa0719550

ATGGGTTACGAAGACAATCCGTATCGTGACGAAGATGGTGAACCGTTGATGGATTACGACGACGTACAATCCGACGGCGAAGGATCACCGGAGCCACAACAACTCGATGATTTCGAAGAAGAAGATGTCGACAATTTTCATGATCGTGCCCGGTCACAGACACCGGTTTACGACAATGATTCGTCCAAATCAAAGCCGAGAAAACGGTTGATTAAGAAAAGCGACACCGGAAAACAGTCAATGGCGTTGCCACCGGAGCTCGAGGATGAATTGGAGGAGGAAGATGAAGGGAGGAAGAGAAAGAAGGGGAAGGAAGGTGGGTCTGGGAAGAAGGAGAAGAGGCTGAAAGGGGGTAGTAGTAGTAGTGGAAAGGGTGGGTCTAGATTTGGTGGTTCTAAGAGAGGGGTTGGTGGGAAAAGTGGGAATGATCGTGAAGGTGAAGTTAATGAGATGTGGGATGCACTTGCTGGAAATTCTGAGGATGACAATGAAGGTGCCAGGAATATGGATGATGATAACTTTATAGATGACACTGGAGTGGAACCTGCTTTGTATGGTTACGATGAACCACGTTCTCCTGGCGATGCTCCACAGGCTGAGGAAGGTGAGGAAGATGATGCAATCAAGGATCTTTTCAAGATGGGCAAGAAAAAGAAGAAGAACGAGAGAAGTCCTGCAGAAATTGCTTTATTAGTTGAGAATGTTATGGCTGAGCTTGAGGTTACAGCAGAAGAGGACGCTGAGCTTAATCTGCAGCACAAGCCTGCAGTCAATAAACTCAAGAAGAAACAGCTTCAGCTAGAGTTTTTAGATCACGGTGTGCTAAATTTATTGAAGAGTTGGCTTGAGCCACTTCCGGATGGAAGTCTGCCAAATATCAACATACGGACAGCAATTTTGAAGATTTTGAATGATTTGCCTATAGATCTAGAGCATTATGATAGAAGAGAACAGCTGAAGAGAAGTGGTCTTGGAAAGGTTATTATGTTTTTATCAAGGTCCGATGAAGAAATCAATGTAAATAGGAGATTAGCCAAGGATTTGGTTGATAAATGGAGCCGACCTATATTTAATAAGAGTACTCGGTTTGAAGACATGCGAAATACTGAGGATGATAGGGTTCCTTACAGGAGGCCATCGGTTAAAAAGCCAGCAACTAAAGCTGCAGGGATGCAATCAAGAGACGGTGATCTTGATTTGGATCTTTCACAGCCTAGGTCCGGAGAGTCGTCTTCCAGGCAACATGCATCAAGGCCAGAAGCCACACCTTTGGATTTTGTGATCCGCCCCCAATCTAAAATTGACCCCGATGAAATCAGAGCACGGGCAAAACAAGCTACACAAGACCAGCATCGTATGAAGATGAATAAGAAATTGCAGCAGTTGAGGGCACCAAAAAAGAAGCAGCTTCAGGCTACAAAACTGAGTGTGGAAGGTCGTGGTATGGCCAAATACTTTTAA

Protein sequence

>Msa0719550

MGYEDNPYRDEDGEPLMDYDDVQSDGEGSPEPQQLDDFEEEDVDNFHDRARSQTPVYDNDSSKSKPRKRLIKKSDTGKQSMALPPELEDELEEEDEGRKRKKGKEGGSGKKEKRLKGGSSSSGKGGSRFGGSKRGVGGKSGNDREGEVNEMWDALAGNSEDDNEGARNMDDDNFIDDTGVEPALYGYDEPRSPGDAPQAEEGEEDDAIKDLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNLQHKPAVNKLKKKQLQLEFLDHGVLNLLKSWLEPLPDGSLPNINIRTAILKILNDLPIDLEHYDRREQLKRSGLGKVIMFLSRSDEEINVNRRLAKDLVDKWSRPIFNKSTRFEDMRNTEDDRVPYRRPSVKKPATKAAGMQSRDGDLDLDLSQPRSGESSSRQHASRPEATPLDFVIRPQSKIDPDEIRARAKQATQDQHRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMAKYF*