AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0257490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257490 MtrunA17_Chr2g0319561 100.000 114 0 0 1 114 1 114 1.32e-82 236
Msa0257490 MtrunA17_Chr4g0024171 87.719 114 13 1 1 114 1 113 2.92e-72 210
Msa0257490 MtrunA17_Chr3g0098971 77.193 114 24 1 1 114 1 112 3.05e-60 180
Msa0257490 MtrunA17_Chr5g0444201 72.973 111 28 1 4 114 2 110 1.47e-55 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257490 AT4G27130.1 86.842 114 14 1 1 114 1 113 1.01e-71 209
Msa0257490 AT5G54760.2 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0257490 AT5G54760.4 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0257490 AT5G54760.3 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0257490 AT5G54760.1 85.965 114 15 1 1 114 1 113 5.04e-71 207
Msa0257490 AT1G54290.1 85.088 114 16 1 1 114 1 113 2.56e-70 206
Msa0257490 AT5G54940.1 74.561 114 27 1 1 114 1 112 3.07e-58 175
Msa0257490 AT5G54940.3 74.561 114 27 1 1 114 1 112 3.07e-58 175
Msa0257490 AT5G54940.2 74.561 114 27 1 1 114 1 112 3.07e-58 175

Find 57 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTGGGGCATTCTATTT+TGG 0.153254 2_2:+53452475 Msa0257490:five_prime_UTR
GTCGTTGAGATTGCGTTGTT+TGG 0.226356 2_2:-53451394 None:intergenic
AAGAATAGAAACCCTAAAAT+TGG 0.267545 2_2:-53451438 None:intergenic
AATGCTGAGGACGCCGGTGC+TGG 0.285317 2_2:+53453567 Msa0257490:CDS
AATTATAGGTTTGAGCTATC+TGG 0.291587 2_2:+53452453 Msa0257490:intron
AAGGAGCATATTAAAATTCA+TGG 0.292939 2_2:+53454848 Msa0257490:CDS
ACAAGTGTTAAAGTTGTATC+TGG 0.320511 2_2:+53454892 Msa0257490:three_prime_UTR
TTCGCTGCTGTATACGAATA+TGG 0.326573 2_2:-53453608 None:intergenic
ATTCATTACCTGGACTAAAA+AGG 0.327921 2_2:-53453877 None:intergenic
ACAGTTGTGATGCAGTATTA+TGG 0.339469 2_2:+53454978 Msa0257490:three_prime_UTR
TCGTTGAGATTGCGTTGTTT+GGG 0.354219 2_2:-53451393 None:intergenic
TATGTATCAAAGGAGTTTAA+AGG 0.362449 2_2:+53455035 Msa0257490:three_prime_UTR
CCTGTCCTTGCTCTGGGTCC+TGG 0.375764 2_2:-53453737 None:intergenic
GGCATCTGAAATCTTGAATC+TGG 0.385123 2_2:-53455133 None:intergenic
CATTTAACATTTCAGATGCT+TGG 0.393622 2_2:+53455073 Msa0257490:three_prime_UTR
TTCAAGATTTCAGATGCCTT+TGG 0.413205 2_2:+53455138 Msa0257490:three_prime_UTR
AGACATACCTGTCCTTGCTC+TGG 0.415595 2_2:-53453744 None:intergenic
TACAACAAAACTCCTTCTTA+AGG 0.416659 2_2:-53453701 None:intergenic
ACGCATCGAAACCCTAATCT+AGG 0.432304 2_2:+53451481 Msa0257490:five_prime_UTR
ATTCATGGTTTCTGAGCAGC+TGG 0.441134 2_2:+53454863 Msa0257490:exon
TTGTGGAATTTCTTGTGGTC+TGG 0.441805 2_2:+53454944 Msa0257490:three_prime_UTR
CGAAACCCTAATCTAGGATC+AGG 0.444875 2_2:+53451487 Msa0257490:five_prime_UTR
GTTTGAGCTATCTGGTTGGT+GGG 0.452122 2_2:+53452461 Msa0257490:five_prime_UTR
GATTTCAGATGCCTTTGGCT+TGG 0.455364 2_2:+53455143 Msa0257490:three_prime_UTR
AGAAACCCTAAAATTGGATA+AGG 0.461080 2_2:-53451432 None:intergenic
GTATCTGGCTCATTTCGAGC+TGG 0.462911 2_2:+53454907 Msa0257490:three_prime_UTR
GACATACCTGTCCTTGCTCT+GGG 0.463686 2_2:-53453743 None:intergenic
TGAATTCTTTCTTCAATCCC+TGG 0.465760 2_2:-53453656 None:intergenic
GGTTTGAGCTATCTGGTTGG+TGG 0.470349 2_2:+53452460 Msa0257490:intron
GTGTAGGTTATTCAACTTCA+AGG 0.470369 2_2:+53453831 Msa0257490:intron
TTGTAATGGTACAGTTGTCC+AGG 0.470439 2_2:+53453719 Msa0257490:CDS
ATGCTGAGGACGCCGGTGCT+GGG 0.477491 2_2:+53453568 Msa0257490:CDS
TCAGCATTTGCCTCAGCAAA+AGG 0.478903 2_2:-53453552 None:intergenic
TATCTGGCTCATTTCGAGCT+GGG 0.490892 2_2:+53454908 Msa0257490:three_prime_UTR
ATTCGTATACAGCAGCGAAA+TGG 0.491023 2_2:+53453612 Msa0257490:CDS
ATGGAATTTATGACATTATG+TGG 0.492829 2_2:+53454997 Msa0257490:three_prime_UTR
TGATTGATTAACAATTAAAG+AGG 0.494724 2_2:+53455175 Msa0257490:three_prime_UTR
CGCCGGTGCTGGGTCATCAA+AGG 0.522725 2_2:+53453578 Msa0257490:CDS
TGTGATTGTGGAATTTCTTG+TGG 0.543118 2_2:+53454939 Msa0257490:three_prime_UTR
GCAATCTCAACGACCGAGAG+AGG 0.543184 2_2:+53451403 Msa0257490:five_prime_UTR
ACAGGCTGGAATCGTGAAGA+AGG 0.545416 2_2:+53454829 Msa0257490:intron
TTTGAGCTATCTGGTTGGTG+GGG 0.548016 2_2:+53452462 Msa0257490:five_prime_UTR
AAAAGCTTGACAACTGTCCA+GGG 0.558576 2_2:+53453639 Msa0257490:CDS
GCTTCAATAATATGTATCAA+AGG 0.574990 2_2:+53455025 Msa0257490:three_prime_UTR
TTCAACTTCAAGGCGATCAG+AGG 0.577444 2_2:+53453841 Msa0257490:CDS
GAGGCAAATGCTGAGGACGC+CGG 0.578099 2_2:+53453561 Msa0257490:CDS
CTCCTTTGATGACCCAGCAC+CGG 0.583753 2_2:-53453580 None:intergenic
GATTCTGAAAGACCTTAAGA+AGG 0.584832 2_2:+53453689 Msa0257490:CDS
CCAGGACCCAGAGCAAGGAC+AGG 0.587475 2_2:+53453737 Msa0257490:CDS
ACCCTAAAATTGGATAAGGA+AGG 0.590478 2_2:-53451428 None:intergenic
CAAAACTTGTTCCAAGCCAA+AGG 0.597344 2_2:-53455154 None:intergenic
GATAAGGAAGGATCCTCTCT+CGG 0.603120 2_2:-53451416 None:intergenic
GCACAAATTCCTACTGCCTA+CGG 0.609588 2_2:+53452525 Msa0257490:CDS
ATAGGTTTGAGCTATCTGGT+TGG 0.616390 2_2:+53452457 Msa0257490:intron
GTTGTCCAGGACCCAGAGCA+AGG 0.630590 2_2:+53453732 Msa0257490:CDS
TGGGTATATATATGTGATTG+TGG 0.634136 2_2:+53454927 Msa0257490:three_prime_UTR
TCCAACTTACCGTAGGCAGT+AGG 0.690363 2_2:-53452534 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTGTAAATGAAATTT+GGG + chr2_2:53451921-53451940 Msa0257490:intron 10.0%
!!! TTTGAATTTTTATTATCTTT+AGG + chr2_2:53452723-53452742 Msa0257490:intron 10.0%
!! GTTATATTGTAAATGAAATT+TGG + chr2_2:53451920-53451939 Msa0257490:intron 15.0%
!! TATATTGTAAATGAAATTTG+GGG + chr2_2:53451922-53451941 Msa0257490:intron 15.0%
!!! ATAATTTGTGTATCAATTTT+AGG + chr2_2:53451963-53451982 Msa0257490:intron 15.0%
!! AATAAGAAACAATTAATTCA+CGG - chr2_2:53452002-53452021 None:intergenic 15.0%
!! AAGATATTGTAAATGAAATT+TGG + chr2_2:53452025-53452044 Msa0257490:intron 15.0%
!! AGATATTGTAAATGAAATTT+GGG + chr2_2:53452026-53452045 Msa0257490:intron 15.0%
!! ATTGTAAATGTAAATGAATT+TGG + chr2_2:53452135-53452154 Msa0257490:intron 15.0%
!! TTGTAAATGTAAATGAATTT+GGG + chr2_2:53452136-53452155 Msa0257490:intron 15.0%
!!! AATGTTTTGATTCTAATTAT+AGG + chr2_2:53452439-53452458 Msa0257490:intron 15.0%
!!! TTTTCTAAAATAGTTTTTTC+TGG + chr2_2:53453166-53453185 Msa0257490:intron 15.0%
!!! TTTCTAAAATAGTTTTTTCT+GGG + chr2_2:53453167-53453186 Msa0257490:intron 15.0%
!!! AAATTGAATTTTTAAAGCTT+AGG + chr2_2:53453343-53453362 Msa0257490:intron 15.0%
!!! CTTCAAATAACATTTTTTTA+TGG + chr2_2:53453809-53453828 Msa0257490:intron 15.0%
!! AGAAAATATCAAAAGTAAAA+CGG - chr2_2:53454008-53454027 None:intergenic 15.0%
!! TAAACATAAAATAATGTCAA+AGG - chr2_2:53454235-53454254 None:intergenic 15.0%
!! TTTACCCATAAATTTATATT+TGG + chr2_2:53454521-53454540 Msa0257490:intron 15.0%
!! AAATTTCGATTTAGAGAAAA+AGG - chr2_2:53451531-53451550 None:intergenic 20.0%
!!! AATTTTCGCGTTTTAATTTT+AGG + chr2_2:53451546-53451565 Msa0257490:intron 20.0%
!!! ATTTTCGCGTTTTAATTTTA+GGG + chr2_2:53451547-53451566 Msa0257490:intron 20.0%
!!! TTCAATTTGCCTAAATTTTA+AGG + chr2_2:53451596-53451615 Msa0257490:intron 20.0%
!!! TCAATTTGCCTAAATTTTAA+GGG + chr2_2:53451597-53451616 Msa0257490:intron 20.0%
!! AATAAAACCCCTTAAAATTT+AGG - chr2_2:53451608-53451627 None:intergenic 20.0%
!!! AAATTTTAAGGGGTTTTATT+TGG + chr2_2:53451608-53451627 Msa0257490:intron 20.0%
!!! TTGTTAATTTTGTGAAGTTT+CGG + chr2_2:53451684-53451703 Msa0257490:intron 20.0%
!!! AGCTGTATATTTGAATTTTT+TGG + chr2_2:53451793-53451812 Msa0257490:intron 20.0%
!!! GCTGTATATTTGAATTTTTT+GGG + chr2_2:53451794-53451813 Msa0257490:intron 20.0%
!!! TTTTTTGGGTATCAATTTTT+AGG + chr2_2:53451808-53451827 Msa0257490:intron 20.0%
!! AAATTGATACCCAAAAAATT+GGG - chr2_2:53451806-53451825 None:intergenic 20.0%
!! ATATTGTAAATGAAATTTGG+GGG + chr2_2:53451923-53451942 Msa0257490:intron 20.0%
!! GATATTGTAAATGAAATTTG+GGG + chr2_2:53452027-53452046 Msa0257490:intron 20.0%
!! ATATTGTAAATGAAATTTGG+GGG + chr2_2:53451923-53451942 Msa0257490:intron 20.0%
!! TTGTAAAGAAATATTGTGAA+TGG + chr2_2:53452058-53452077 Msa0257490:intron 20.0%
!!! AATATTGTGAATGGATTTTT+AGG + chr2_2:53452067-53452086 Msa0257490:intron 20.0%
!! TGTAAATGTAAATGAATTTG+GGG + chr2_2:53452137-53452156 Msa0257490:intron 20.0%
!!! GATAGATATATTGTTTTTGT+TGG + chr2_2:53452344-53452363 Msa0257490:intron 20.0%
!! CTGAATTATAATAACAATCT+CGG - chr2_2:53452417-53452436 None:intergenic 20.0%
!!! ATATTGCTTTTACTTTTACT+TGG + chr2_2:53452921-53452940 Msa0257490:intron 20.0%
!!! TTCTAAAATAGTTTTTTCTG+GGG + chr2_2:53453168-53453187 Msa0257490:intron 20.0%
!!! TTTGATCTGAAATAGTATTT+TGG + chr2_2:53453303-53453322 Msa0257490:intron 20.0%
!!! TTGATCTGAAATAGTATTTT+GGG + chr2_2:53453304-53453323 Msa0257490:intron 20.0%
!!! ATAACATTTTTTTATGGTGT+AGG + chr2_2:53453815-53453834 Msa0257490:intron 20.0%
!! GTAAAACGGAAAAATAAAAA+AGG - chr2_2:53453994-53454013 None:intergenic 20.0%
!!! TTTACTTTTGATATTTTCTG+TGG + chr2_2:53454009-53454028 Msa0257490:intron 20.0%
!!! AAAAAGAAGTCTGTTTTTAA+AGG + chr2_2:53454100-53454119 Msa0257490:intron 20.0%
!!! GTAAAAATAGTTGATATTCT+AGG - chr2_2:53454327-53454346 None:intergenic 20.0%
!!! ATCAACTATTTTTACTAAAC+AGG + chr2_2:53454332-53454351 Msa0257490:intron 20.0%
!!! TCAACTATTTTTACTAAACA+GGG + chr2_2:53454333-53454352 Msa0257490:intron 20.0%
!! TCCACCAAATATAAATTTAT+GGG - chr2_2:53454528-53454547 None:intergenic 20.0%
!! ATCCACCAAATATAAATTTA+TGG - chr2_2:53454529-53454548 None:intergenic 20.0%
!! TGATTGATTAACAATTAAAG+AGG + chr2_2:53455175-53455194 Msa0257490:three_prime_UTR 20.0%
! AAGAATAGAAACCCTAAAAT+TGG - chr2_2:53451441-53451460 None:intergenic 25.0%
! GGCAAATTGAAATCAAAATT+AGG - chr2_2:53451587-53451606 None:intergenic 25.0%
!! CAATTTGCCTAAATTTTAAG+GGG + chr2_2:53451598-53451617 Msa0257490:intron 25.0%
! CTAAATATCAACAAGAGAAA+TGG - chr2_2:53451660-53451679 None:intergenic 25.0%
!! TGTTAATTTTGTGAAGTTTC+GGG + chr2_2:53451685-53451704 Msa0257490:intron 25.0%
!! AAGCTTTTATCTTTGAATCA+TGG + chr2_2:53451763-53451782 Msa0257490:intron 25.0%
! GAAATTGATACCCAAAAAAT+TGG - chr2_2:53451859-53451878 None:intergenic 25.0%
!!! TTTTTTGGGTATCAATTTCT+AGG + chr2_2:53451860-53451879 Msa0257490:intron 25.0%
! GTAAATGTAAATGAATTTGG+GGG + chr2_2:53452138-53452157 Msa0257490:intron 25.0%
! TTAAAATCACAGCTAAACAT+GGG - chr2_2:53452213-53452232 None:intergenic 25.0%
!!! TATTGTTTTTGTTGGATTTG+TGG + chr2_2:53452352-53452371 Msa0257490:intron 25.0%
! ATAGAAGAATTTCTCATTTC+TGG - chr2_2:53452830-53452849 None:intergenic 25.0%
! CATCTCGTTAAATAATGAAA+TGG - chr2_2:53453115-53453134 None:intergenic 25.0%
! AGATTGGAATGTTTATACTT+TGG + chr2_2:53453207-53453226 Msa0257490:intron 25.0%
! GATTGGAATGTTTATACTTT+GGG + chr2_2:53453208-53453227 Msa0257490:intron 25.0%
! TTAAGCATCTTGTTCAATAA+TGG - chr2_2:53453259-53453278 None:intergenic 25.0%
! TCAAAGTTATGTACAATGAT+TGG - chr2_2:53453288-53453307 None:intergenic 25.0%
!!! TGATCTGAAATAGTATTTTG+GGG + chr2_2:53453305-53453324 Msa0257490:intron 25.0%
! AGATGAAGAATAGAAATAGA+TGG + chr2_2:53453434-53453453 Msa0257490:intron 25.0%
!! AATGTTATTTGAAGCAACAA+GGG - chr2_2:53453803-53453822 None:intergenic 25.0%
!! AAATGTTATTTGAAGCAACA+AGG - chr2_2:53453804-53453823 None:intergenic 25.0%
!!! ATAAAAAAGGTACTTAACCA+GGG - chr2_2:53453981-53454000 None:intergenic 25.0%
!!! AATAAAAAAGGTACTTAACC+AGG - chr2_2:53453982-53454001 None:intergenic 25.0%
! TTAATGAAAATAGAGCTGTT+TGG + chr2_2:53454159-53454178 Msa0257490:intron 25.0%
! TTATTTGAATTAAGCATAGC+AGG - chr2_2:53454198-53454217 None:intergenic 25.0%
! ACCCATAAATTTATATTTGG+TGG + chr2_2:53454524-53454543 Msa0257490:intron 25.0%
!! AAGGAGCATATTAAAATTCA+TGG + chr2_2:53454848-53454867 Msa0257490:CDS 25.0%
! ATGGAATTTATGACATTATG+TGG + chr2_2:53454997-53455016 Msa0257490:three_prime_UTR 25.0%
! GCTTCAATAATATGTATCAA+AGG + chr2_2:53455025-53455044 Msa0257490:three_prime_UTR 25.0%
! TATGTATCAAAGGAGTTTAA+AGG + chr2_2:53455035-53455054 Msa0257490:three_prime_UTR 25.0%
! ATCCTTCCTTATCCAATTTT+AGG + chr2_2:53451426-53451445 Msa0257490:five_prime_UTR 30.0%
! TCCTTCCTTATCCAATTTTA+GGG + chr2_2:53451427-53451446 Msa0257490:five_prime_UTR 30.0%
AGAAACCCTAAAATTGGATA+AGG - chr2_2:53451435-53451454 None:intergenic 30.0%
! TTTTACCTGATCCTAGATTA+GGG - chr2_2:53451495-53451514 None:intergenic 30.0%
! ATTTTACCTGATCCTAGATT+AGG - chr2_2:53451496-53451515 None:intergenic 30.0%
! ATTTTTGAACGAGTAAGTCT+TGG + chr2_2:53451719-53451738 Msa0257490:intron 30.0%
! TTTTTGAACGAGTAAGTCTT+GGG + chr2_2:53451720-53451739 Msa0257490:intron 30.0%
!!! GGTATCAATTTTTAGGTGTT+TGG + chr2_2:53451815-53451834 Msa0257490:intron 30.0%
! TTTAGGTGTTTGGTTTAACA+TGG + chr2_2:53451825-53451844 Msa0257490:intron 30.0%
!!! TGGTGTAAATCCCAATTTTT+TGG + chr2_2:53451845-53451864 Msa0257490:intron 30.0%
!!! GGTGTAAATCCCAATTTTTT+GGG + chr2_2:53451846-53451865 Msa0257490:intron 30.0%
CTTAAAATCACAGCTAAACA+TGG - chr2_2:53452214-53452233 None:intergenic 30.0%
!! GTGATTTTAAGAGTTTGTGA+CGG + chr2_2:53452223-53452242 Msa0257490:intron 30.0%
!! TGATTTTAAGAGTTTGTGAC+GGG + chr2_2:53452224-53452243 Msa0257490:intron 30.0%
GAAATTATCCATGCTTATTG+TGG + chr2_2:53452276-53452295 Msa0257490:intron 30.0%
AATTATAGGTTTGAGCTATC+TGG + chr2_2:53452453-53452472 Msa0257490:intron 30.0%
TCAATTATACTGTGTACTGT+TGG + chr2_2:53452651-53452670 Msa0257490:intron 30.0%
CAATTATACTGTGTACTGTT+GGG + chr2_2:53452652-53452671 Msa0257490:intron 30.0%
GAATTTACTAGTCAATTGTC+AGG - chr2_2:53452764-53452783 None:intergenic 30.0%
AAAAAATTCTGTGCGATTCT+TGG - chr2_2:53453149-53453168 None:intergenic 30.0%
ATATGATATATGACTCCTGT+GGG + chr2_2:53453507-53453526 Msa0257490:intron 30.0%
! AATTTTAGATCCTTTTGCTG+AGG + chr2_2:53453542-53453561 Msa0257490:intron 30.0%
TACAACAAAACTCCTTCTTA+AGG - chr2_2:53453704-53453723 None:intergenic 30.0%
!!! AAGAAGGAGTTTTGTTGTAA+TGG + chr2_2:53453705-53453724 Msa0257490:CDS 30.0%
! ATGTTATTTGAAGCAACAAG+GGG - chr2_2:53453802-53453821 None:intergenic 30.0%
ATTCATTACCTGGACTAAAA+AGG - chr2_2:53453880-53453899 None:intergenic 30.0%
AATGAATGACTTCACATCTT+TGG + chr2_2:53453893-53453912 Msa0257490:intron 30.0%
TATCTAAATCCGTTCTATAG+AGG - chr2_2:53454557-53454576 None:intergenic 30.0%
GATTTAGATACGTAAATCAC+TGG + chr2_2:53454567-53454586 Msa0257490:intron 30.0%
AGAATATAACAGATCGTTGT+AGG - chr2_2:53454601-53454620 None:intergenic 30.0%
AATAAACGTTTGTCACTACA+TGG - chr2_2:53454659-53454678 None:intergenic 30.0%
TATTCATGTCATTCATCGTA+TGG + chr2_2:53454675-53454694 Msa0257490:intron 30.0%
ACAAGTGTTAAAGTTGTATC+TGG + chr2_2:53454892-53454911 Msa0257490:three_prime_UTR 30.0%
TGGGTATATATATGTGATTG+TGG + chr2_2:53454927-53454946 Msa0257490:three_prime_UTR 30.0%
CATTTAACATTTCAGATGCT+TGG + chr2_2:53455073-53455092 Msa0257490:three_prime_UTR 30.0%
ACCCTAAAATTGGATAAGGA+AGG - chr2_2:53451431-53451450 None:intergenic 35.0%
!! TGAATGGATTTTTAGGCATG+TGG + chr2_2:53452074-53452093 Msa0257490:intron 35.0%
TTATCCATGCTTATTGTGGT+TGG + chr2_2:53452280-53452299 Msa0257490:intron 35.0%
TATCCATGCTTATTGTGGTT+GGG + chr2_2:53452281-53452300 Msa0257490:intron 35.0%
TTCATGATATGCAGTCATTC+TGG + chr2_2:53452608-53452627 Msa0257490:intron 35.0%
! ATATGCAGTCATTCTGGAAA+GGG + chr2_2:53452614-53452633 Msa0257490:intron 35.0%
!! AATCTGAGACAGCATTTTCA+AGG - chr2_2:53452680-53452699 None:intergenic 35.0%
!! CATTTCTGGAGTTTAGTTGA+AGG - chr2_2:53452885-53452904 None:intergenic 35.0%
GTAAGAAAGCAACTCATTTC+TGG - chr2_2:53452899-53452918 None:intergenic 35.0%
! TGCTTAACGTGGTTTAAGAT+TGG + chr2_2:53453191-53453210 Msa0257490:intron 35.0%
!!! AATAGTATTTTGGGGTCTTG+AGG + chr2_2:53453313-53453332 Msa0257490:intron 35.0%
TAGGATCTTAACGTTTGTGA+AGG + chr2_2:53453362-53453381 Msa0257490:intron 35.0%
AGGATCTTAACGTTTGTGAA+GGG + chr2_2:53453363-53453382 Msa0257490:intron 35.0%
TACATAATGAATGCTGTGTG+AGG - chr2_2:53453415-53453434 None:intergenic 35.0%
GATATGATATATGACTCCTG+TGG + chr2_2:53453506-53453525 Msa0257490:intron 35.0%
TGAATTCTTTCTTCAATCCC+TGG - chr2_2:53453659-53453678 None:intergenic 35.0%
! GATTCTGAAAGACCTTAAGA+AGG + chr2_2:53453689-53453708 Msa0257490:CDS 35.0%
GTGTAGGTTATTCAACTTCA+AGG + chr2_2:53453831-53453850 Msa0257490:intron 35.0%
ATGTGAAGTCATTCATTACC+TGG - chr2_2:53453890-53453909 None:intergenic 35.0%
AAGGCATATGCTTAGCTTAT+TGG + chr2_2:53454119-53454138 Msa0257490:intron 35.0%
! TTTGTTAGCTTCTCAGCAAT+AGG + chr2_2:53454288-53454307 Msa0257490:intron 35.0%
!!! TGTGTTTTTTTCCTCCTGAT+TGG + chr2_2:53454362-53454381 Msa0257490:intron 35.0%
!!! GTGTTTTTTTCCTCCTGATT+GGG + chr2_2:53454363-53454382 Msa0257490:intron 35.0%
TATTCATGCCTTTCATTGCA+TGG + chr2_2:53454718-53454737 Msa0257490:intron 35.0%
! TCAGTTTTCCATGCAATGAA+AGG - chr2_2:53454729-53454748 None:intergenic 35.0%
TTCAAATTCACAAGTGCAGA+GGG - chr2_2:53454810-53454829 None:intergenic 35.0%
TGTGATTGTGGAATTTCTTG+TGG + chr2_2:53454939-53454958 Msa0257490:three_prime_UTR 35.0%
ACAGTTGTGATGCAGTATTA+TGG + chr2_2:53454978-53454997 Msa0257490:three_prime_UTR 35.0%
TTCAAGATTTCAGATGCCTT+TGG + chr2_2:53455138-53455157 Msa0257490:three_prime_UTR 35.0%
!! GGTTTTATGACCTAAAACAC+TGG + chr2_2:53455196-53455215 Msa0257490:three_prime_UTR 35.0%
TCGTTGAGATTGCGTTGTTT+GGG - chr2_2:53451396-53451415 None:intergenic 40.0%
ATAGGTTTGAGCTATCTGGT+TGG + chr2_2:53452457-53452476 Msa0257490:intron 40.0%
ATAGAGTTCCAACTTACCGT+AGG - chr2_2:53452544-53452563 None:intergenic 40.0%
! GATATGCAGTCATTCTGGAA+AGG + chr2_2:53452613-53452632 Msa0257490:intron 40.0%
!! TTGGGTTTTATCGTGTGTGA+AGG + chr2_2:53453226-53453245 Msa0257490:intron 40.0%
TTCGCTGCTGTATACGAATA+TGG - chr2_2:53453611-53453630 None:intergenic 40.0%
ATTCGTATACAGCAGCGAAA+TGG + chr2_2:53453612-53453631 Msa0257490:CDS 40.0%
AAAAAGCTTGACAACTGTCC+AGG + chr2_2:53453638-53453657 Msa0257490:CDS 40.0%
AAAAGCTTGACAACTGTCCA+GGG + chr2_2:53453639-53453658 Msa0257490:CDS 40.0%
TTGTAATGGTACAGTTGTCC+AGG + chr2_2:53453719-53453738 Msa0257490:CDS 40.0%
!! TGTGTCTACCTTTTTAGTCC+AGG + chr2_2:53453869-53453888 Msa0257490:CDS 40.0%
TACTTAACCAGGGAAACAGA+TGG - chr2_2:53453971-53453990 None:intergenic 40.0%
! TGTCTGAGATCAAGTTTCTC+TGG + chr2_2:53454052-53454071 Msa0257490:intron 40.0%
AGGAGGAAAAAAACACACTG+AGG - chr2_2:53454359-53454378 None:intergenic 40.0%
GTACAAGATCATTCCCAATC+AGG - chr2_2:53454379-53454398 None:intergenic 40.0%
ACTTATAGAGTTGCCTTTCC+CGG + chr2_2:53454481-53454500 Msa0257490:intron 40.0%
GGATGTATGCCTCTATAGAA+CGG + chr2_2:53454545-53454564 Msa0257490:intron 40.0%
GTTCAAATTCACAAGTGCAG+AGG - chr2_2:53454811-53454830 None:intergenic 40.0%
CTGCACTTGTGAATTTGAAC+AGG + chr2_2:53454811-53454830 Msa0257490:intron 40.0%
ACTTGTGAATTTGAACAGGC+TGG + chr2_2:53454815-53454834 Msa0257490:intron 40.0%
TTGTGGAATTTCTTGTGGTC+TGG + chr2_2:53454944-53454963 Msa0257490:three_prime_UTR 40.0%
! GGCATCTGAAATCTTGAATC+TGG - chr2_2:53455136-53455155 None:intergenic 40.0%
! CAAAACTTGTTCCAAGCCAA+AGG - chr2_2:53455157-53455176 None:intergenic 40.0%
GTCGTTGAGATTGCGTTGTT+TGG - chr2_2:53451397-53451416 None:intergenic 45.0%
GATAAGGAAGGATCCTCTCT+CGG - chr2_2:53451419-53451438 None:intergenic 45.0%
ACGCATCGAAACCCTAATCT+AGG + chr2_2:53451481-53451500 Msa0257490:five_prime_UTR 45.0%
! CGAAACCCTAATCTAGGATC+AGG + chr2_2:53451487-53451506 Msa0257490:five_prime_UTR 45.0%
TTGCCCAACCACAATAAGCA+TGG - chr2_2:53452287-53452306 None:intergenic 45.0%
ACATTCCCCACCATGCTTAT+CGG + chr2_2:53452316-53452335 Msa0257490:intron 45.0%
GTTTGAGCTATCTGGTTGGT+GGG + chr2_2:53452461-53452480 Msa0257490:five_prime_UTR 45.0%
! TTTGAGCTATCTGGTTGGTG+GGG + chr2_2:53452462-53452481 Msa0257490:five_prime_UTR 45.0%
!! GTTGGTGGGGCATTCTATTT+TGG + chr2_2:53452475-53452494 Msa0257490:five_prime_UTR 45.0%
GCACAAATTCCTACTGCCTA+CGG + chr2_2:53452525-53452544 Msa0257490:CDS 45.0%
GACAGACAACACGCATCAAT+AGG - chr2_2:53452573-53452592 None:intergenic 45.0%
!!! TTTTTCTGGGGTGCTTAACG+TGG + chr2_2:53453180-53453199 Msa0257490:intron 45.0%
!!! AGTATTTTGGGGTCTTGAGG+TGG + chr2_2:53453316-53453335 Msa0257490:intron 45.0%
TCAGCATTTGCCTCAGCAAA+AGG - chr2_2:53453555-53453574 None:intergenic 45.0%
! TTTTGCTGAGGCAAATGCTG+AGG + chr2_2:53453554-53453573 Msa0257490:CDS 45.0%
TTCAACTTCAAGGCGATCAG+AGG + chr2_2:53453841-53453860 Msa0257490:CDS 45.0%
GTGGCGTAATTTGATCTGAG+TGG + chr2_2:53454028-53454047 Msa0257490:intron 45.0%
CAAGATCATTCCCAATCAGG+AGG - chr2_2:53454376-53454395 None:intergenic 45.0%
ATAAGTGCCAACCTGCTCAA+AGG - chr2_2:53454467-53454486 None:intergenic 45.0%
CTTATAGAGTTGCCTTTCCC+GGG + chr2_2:53454482-53454501 Msa0257490:intron 45.0%
AAGACTGTTTACCCAAGTCC+CGG - chr2_2:53454503-53454522 None:intergenic 45.0%
TTCACAAGTGCAGAGGGATA+AGG - chr2_2:53454804-53454823 None:intergenic 45.0%
ATTCATGGTTTCTGAGCAGC+TGG + chr2_2:53454863-53454882 Msa0257490:exon 45.0%
! TATCTGGCTCATTTCGAGCT+GGG + chr2_2:53454908-53454927 Msa0257490:three_prime_UTR 45.0%
GATTTCAGATGCCTTTGGCT+TGG + chr2_2:53455143-53455162 Msa0257490:three_prime_UTR 45.0%
!! TATAAGTAAAAAAAAAAATA+GGG - chr2_2:53452959-53452978 None:intergenic 5.0%
!! TTATAAGTAAAAAAAAAAAT+AGG - chr2_2:53452960-53452979 None:intergenic 5.0%
!! TTAAGAGTTTGTGACGGGCG+TGG + chr2_2:53452229-53452248 Msa0257490:intron 50.0%
CATTCCCCACCATGCTTATC+GGG + chr2_2:53452317-53452336 Msa0257490:intron 50.0%
ATTCCCCACCATGCTTATCG+GGG + chr2_2:53452318-53452337 Msa0257490:intron 50.0%
GGTTTGAGCTATCTGGTTGG+TGG + chr2_2:53452460-53452479 Msa0257490:intron 50.0%
TCCTACTGCCTACGGTAAGT+TGG + chr2_2:53452533-53452552 Msa0257490:intron 50.0%
TCCAACTTACCGTAGGCAGT+AGG - chr2_2:53452537-53452556 None:intergenic 50.0%
TATGACTCCTGTGGGATGTG+TGG + chr2_2:53453515-53453534 Msa0257490:intron 50.0%
ATTGTTGCCACACATCCCAC+AGG - chr2_2:53453525-53453544 None:intergenic 50.0%
GACATACCTGTCCTTGCTCT+GGG - chr2_2:53453746-53453765 None:intergenic 50.0%
AGACATACCTGTCCTTGCTC+TGG - chr2_2:53453747-53453766 None:intergenic 50.0%
CAGGGAAACAGATGGATCTC+AGG - chr2_2:53453963-53453982 None:intergenic 50.0%
CTGAGATCCATCTGTTTCCC+TGG + chr2_2:53453961-53453980 Msa0257490:intron 50.0%
AGACTGTTTACCCAAGTCCC+GGG - chr2_2:53454502-53454521 None:intergenic 50.0%
ACAGGCTGGAATCGTGAAGA+AGG + chr2_2:53454829-53454848 Msa0257490:intron 50.0%
! GTATCTGGCTCATTTCGAGC+TGG + chr2_2:53454907-53454926 Msa0257490:three_prime_UTR 50.0%
GCAATCTCAACGACCGAGAG+AGG + chr2_2:53451403-53451422 Msa0257490:five_prime_UTR 55.0%
TTCCCCACCATGCTTATCGG+GGG + chr2_2:53452319-53452338 Msa0257490:intron 55.0%
CTATCAGCCCCCGATAAGCA+TGG - chr2_2:53452329-53452348 None:intergenic 55.0%
! CTCCTTTGATGACCCAGCAC+CGG - chr2_2:53453583-53453602 None:intergenic 55.0%
TTCGCACCAGTCCTTTGAGC+AGG + chr2_2:53454453-53454472 Msa0257490:intron 55.0%
CACCAGTCCTTTGAGCAGGT+TGG + chr2_2:53454457-53454476 Msa0257490:intron 55.0%
TGCCAACCTGCTCAAAGGAC+TGG - chr2_2:53454462-53454481 None:intergenic 55.0%
AGTTGCCTTTCCCGGGACTT+GGG + chr2_2:53454489-53454508 Msa0257490:intron 55.0%
GTTTACCCAAGTCCCGGGAA+AGG - chr2_2:53454497-53454516 None:intergenic 55.0%
AGCCCCCGATAAGCATGGTG+GGG - chr2_2:53452324-53452343 None:intergenic 60.0%
CAGCCCCCGATAAGCATGGT+GGG - chr2_2:53452325-53452344 None:intergenic 60.0%
TCAGCCCCCGATAAGCATGG+TGG - chr2_2:53452326-53452345 None:intergenic 60.0%
GAGGCAAATGCTGAGGACGC+CGG + chr2_2:53453561-53453580 Msa0257490:CDS 60.0%
GTTGTCCAGGACCCAGAGCA+AGG + chr2_2:53453732-53453751 Msa0257490:CDS 60.0%
GAGTTGCCTTTCCCGGGACT+TGG + chr2_2:53454488-53454507 Msa0257490:intron 60.0%
AATGCTGAGGACGCCGGTGC+TGG + chr2_2:53453567-53453586 Msa0257490:CDS 65.0%
ATGCTGAGGACGCCGGTGCT+GGG + chr2_2:53453568-53453587 Msa0257490:CDS 65.0%
! CGCCGGTGCTGGGTCATCAA+AGG + chr2_2:53453578-53453597 Msa0257490:CDS 65.0%
! CCTGTCCTTGCTCTGGGTCC+TGG - chr2_2:53453740-53453759 None:intergenic 65.0%
CCAGGACCCAGAGCAAGGAC+AGG + chr2_2:53453737-53453756 Msa0257490:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 53451393 53455225 53451393 ID=Msa0257490;Name=Msa0257490
chr2_2 mRNA 53451393 53455225 53451393 ID=Msa0257490-mRNA-1;Parent=Msa0257490;Name=Msa0257490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=165|1|1|1|0.25|0.4|5|348|114
chr2_2 exon 53451393 53451508 53451393 ID=Msa0257490-mRNA-1:exon:16045;Parent=Msa0257490-mRNA-1
chr2_2 exon 53452461 53452546 53452461 ID=Msa0257490-mRNA-1:exon:16046;Parent=Msa0257490-mRNA-1
chr2_2 exon 53453550 53453758 53453550 ID=Msa0257490-mRNA-1:exon:16047;Parent=Msa0257490-mRNA-1
chr2_2 exon 53453837 53453890 53453837 ID=Msa0257490-mRNA-1:exon:16048;Parent=Msa0257490-mRNA-1
chr2_2 exon 53454833 53455225 53454833 ID=Msa0257490-mRNA-1:exon:16049;Parent=Msa0257490-mRNA-1
chr2_2 five_prime_UTR 53451393 53451508 53451393 ID=Msa0257490-mRNA-1:five_prime_utr;Parent=Msa0257490-mRNA-1
chr2_2 five_prime_UTR 53452461 53452509 53452461 ID=Msa0257490-mRNA-1:five_prime_utr;Parent=Msa0257490-mRNA-1
chr2_2 CDS 53452510 53452546 53452510 ID=Msa0257490-mRNA-1:cds;Parent=Msa0257490-mRNA-1
chr2_2 CDS 53453550 53453758 53453550 ID=Msa0257490-mRNA-1:cds;Parent=Msa0257490-mRNA-1
chr2_2 CDS 53453837 53453890 53453837 ID=Msa0257490-mRNA-1:cds;Parent=Msa0257490-mRNA-1
chr2_2 CDS 53454833 53454877 53454833 ID=Msa0257490-mRNA-1:cds;Parent=Msa0257490-mRNA-1
chr2_2 three_prime_UTR 53454878 53455225 53454878 ID=Msa0257490-mRNA-1:three_prime_utr;Parent=Msa0257490-mRNA-1
Gene Sequence

>Msa0257490

ATGTCTGAATTAGACGCACAAATTCCTACTGCCTACGATCCTTTTGCTGAGGCAAATGCTGAGGACGCCGGTGCTGGGTCATCAAAGGAGTACGTCCATATTCGTATACAGCAGCGAAATGGTAGAAAAAGCTTGACAACTGTCCAGGGATTGAAGAAAGAATTCAGTTACAACAAGATTCTGAAAGACCTTAAGAAGGAGTTTTGTTGTAATGGTACAGTTGTCCAGGACCCAGAGCAAGGACAGGTTATTCAACTTCAAGGCGATCAGAGGAAAAATGTGTCTACCTTTTTAGTCCAGGCTGGAATCGTGAAGAAGGAGCATATTAAAATTCATGGTTTCTGA

Protein sequence

>Msa0257490

MSELDAQIPTAYDPFAEANAEDAGAGSSKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEQGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF*