AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0974950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974950 MtrunA17_Chr6g0453631 98.643 221 3 0 1 221 1 221 2.48e-162 447
Msa0974950 MtrunA17_Chr7g0217961 82.805 221 38 0 1 221 1 221 2.62e-135 379
Msa0974950 MtrunA17_Chr3g0091631 68.636 220 69 0 1 220 64 283 1.13e-112 323
Msa0974950 MtrunA17_Chr5g0418041 63.182 220 80 1 1 219 1 220 6.54e-103 296
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974950 AT3G29100.3 74.661 221 56 0 1 221 1 221 2.57e-125 353
Msa0974950 AT5G39510.1 74.661 221 56 0 1 221 1 221 8.76e-117 332
Msa0974950 AT1G26670.1 65.909 220 74 1 1 219 1 220 5.92e-108 310
Msa0974950 AT3G29100.1 74.706 170 43 0 52 221 26 195 2.04e-93 272
Msa0974950 AT3G29100.2 75.449 167 41 0 55 221 1 167 2.53e-92 268
Msa0974950 AT3G29100.4 75.449 167 41 0 55 221 1 167 2.53e-92 268
Msa0974950 AT3G29100.5 75.449 167 41 0 55 221 1 167 2.53e-92 268
Msa0974950 AT5G39630.1 45.249 221 107 2 1 221 1 207 4.04e-57 180

Find 78 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTATTCTGATTTGTGAT+TGG 0.250953 6_4:-8476943 Msa0974950:three_prime_UTR
TTACCTGCATTCTATTTCTA+TGG 0.265615 6_4:-8476699 Msa0974950:three_prime_UTR
AGAAGTACGCCCTTGATATT+TGG 0.266172 6_4:+8478166 None:intergenic
GAGTTCAAACAATATTTCTA+TGG 0.333314 6_4:-8476735 Msa0974950:three_prime_UTR
CAAATTCAAACATTATTACT+TGG 0.336594 6_4:+8476664 None:intergenic
TATGCTCACTTGCAGCTTCA+TGG 0.345802 6_4:-8477182 Msa0974950:intron
TCTTATTCTGATTTGTGATT+GGG 0.350758 6_4:-8476942 Msa0974950:three_prime_UTR
GAAGTTAAGAAAATTGTATC+TGG 0.358519 6_4:-8478097 Msa0974950:CDS
AGGCCTACTTGTCCTCATAT+TGG 0.362268 6_4:-8477009 Msa0974950:three_prime_UTR
ATTTAACAAGTTTGAAGTAT+AGG 0.376074 6_4:+8477039 None:intergenic
ACGTGCGGTGGTCGGGGAAG+CGG 0.376348 6_4:+8481331 None:intergenic
ACTGCAGCTACAGCTCTTAA+TGG 0.384286 6_4:-8481022 Msa0974950:CDS
CGGGATGAATTGTTGGAATC+AGG 0.384558 6_4:-8478055 Msa0974950:CDS
CGTACTTCTTGCTAAGTTGC+GGG 0.400581 6_4:-8478152 Msa0974950:CDS
AATTGATGAAGCAGAGGCTT+TGG 0.405885 6_4:-8478306 Msa0974950:intron
CAAGACTGGTGAACGAGTTA+AGG 0.419278 6_4:-8477868 Msa0974950:CDS
TTCTGCACGGGATGAATTGT+TGG 0.425706 6_4:-8478062 Msa0974950:CDS
AACAAGAACAAGTGGATCAT+TGG 0.431646 6_4:-8477101 Msa0974950:CDS
CAGCATAACCACGAAGAATC+TGG 0.431760 6_4:+8476761 None:intergenic
GATATTTATGAACCAATATG+AGG 0.440996 6_4:+8476997 None:intergenic
TTATGACAAACATGTCTAGA+AGG 0.449390 6_4:-8477127 Msa0974950:CDS
TGGCTGCATTGTGCTCGTCC+TGG 0.452609 6_4:-8477081 Msa0974950:CDS
TTCAAACATTATTACTTGGA+CGG 0.455335 6_4:+8476668 None:intergenic
GATGATGTTGGCTTCGTTGA+AGG 0.456056 6_4:-8476878 Msa0974950:three_prime_UTR
AAGTTCCGAAAGGAGAAGTT+TGG 0.456497 6_4:+8481410 None:intergenic
CAACACCAAACTTCTCCTTT+CGG 0.465947 6_4:-8481415 Msa0974950:five_prime_UTR
AAACTTGTTAAATAGTCAAA+AGG 0.474593 6_4:-8477029 Msa0974950:exon
AATAGAAACACCTAGCTCTT+CGG 0.477415 6_4:+8477821 None:intergenic
GGATAGTAGGAGAACAATGT+TGG 0.477424 6_4:-8477847 Msa0974950:CDS
TTACAAAACCAGATTCTTCG+TGG 0.484853 6_4:-8476769 Msa0974950:three_prime_UTR
GCTGTAAACTTCTTGCCTCA+AGG 0.487755 6_4:+8478188 None:intergenic
CGGGAAATTTGACCGGAGAA+TGG 0.489659 6_4:+8481381 None:intergenic
AATGGCATGTGTCTTATGTC+GGG 0.490943 6_4:-8476849 Msa0974950:three_prime_UTR
AAGTTTACAGCCAAATATCA+AGG 0.491164 6_4:-8478176 Msa0974950:CDS
AGAATGAGTAACGTGTTTGA+AGG 0.491550 6_4:-8481094 Msa0974950:CDS
GCAAGTTAACTTGATGATGT+TGG 0.495018 6_4:-8476890 Msa0974950:three_prime_UTR
GAACTTCCGCAACCATTCTC+CGG 0.498400 6_4:-8481393 Msa0974950:five_prime_UTR
GTCGCTGTGAATGCAAATCT+TGG 0.499632 6_4:+8477796 None:intergenic
GGTCGGGGAAGCGGAGGTGA+CGG 0.506957 6_4:+8481340 None:intergenic
GTGAACGAGTTAAGGATAGT+AGG 0.508845 6_4:-8477860 Msa0974950:CDS
CGAAAGGAGAAGTTTGGTGT+TGG 0.509543 6_4:+8481416 None:intergenic
CAATGGCATGTGTCTTATGT+CGG 0.514949 6_4:-8476850 Msa0974950:three_prime_UTR
GATCGTACGTGCGGTGGTCG+GGG 0.525305 6_4:+8481325 None:intergenic
GCGTACTTCTTGCTAAGTTG+CGG 0.526345 6_4:-8478153 Msa0974950:CDS
GACGGCGAAGGTTGAAGAAA+CGG 0.527842 6_4:+8481358 None:intergenic
TTTGTAATTAAAATCTTGCA+AGG 0.529705 6_4:+8476785 None:intergenic
ATTTGACCGGAGAATGGTTG+CGG 0.532029 6_4:+8481387 None:intergenic
AACAATTCATCCCGTGCAGA+AGG 0.532426 6_4:+8478064 None:intergenic
TGCGGTGGTCGGGGAAGCGG+AGG 0.534878 6_4:+8481334 None:intergenic
AAAGTTTCGGAAGTAAAGGC+TGG 0.543764 6_4:-8478329 Msa0974950:CDS
AAACTTGAATCCTTCTGCAC+GGG 0.560531 6_4:-8478074 Msa0974950:CDS
ATGATGTTGGCTTCGTTGAA+GGG 0.562147 6_4:-8476877 Msa0974950:three_prime_UTR
GGAAGCGGAGGTGACGGCGA+AGG 0.562227 6_4:+8481346 None:intergenic
GAGATCGTACGTGCGGTGGT+CGG 0.564429 6_4:+8481323 None:intergenic
ACTGAGAGGTTGAACAAGAC+TGG 0.566247 6_4:-8477882 Msa0974950:CDS
CGACATAAGACACATGCCAT+TGG 0.574278 6_4:+8476851 None:intergenic
CTTCGTTGAAGGGACACCAA+TGG 0.577014 6_4:-8476867 Msa0974950:three_prime_UTR
GAAGGATGAACAAGAACAAG+TGG 0.577885 6_4:-8477109 Msa0974950:CDS
GAACCAATATGAGGACAAGT+AGG 0.582060 6_4:+8477006 None:intergenic
TTGTAATTAAAATCTTGCAA+GGG 0.585801 6_4:+8476786 None:intergenic
GAAACTTGAATCCTTCTGCA+CGG 0.597232 6_4:-8478075 Msa0974950:CDS
GAAACGGCGGGAAATTTGAC+CGG 0.600107 6_4:+8481374 None:intergenic
ACACCATAGAAATAGAATGC+AGG 0.603134 6_4:+8476696 None:intergenic
GGCTGGAATTGATGAAGCAG+AGG 0.608179 6_4:-8478312 Msa0974950:CDS
TGAATTGTTGGAATCAGGCA+TGG 0.618002 6_4:-8478050 Msa0974950:CDS
CATGGCGTGGATGATAACAT+AGG 0.620321 6_4:-8477164 Msa0974950:CDS
GCGAAGGTTGAAGAAACGGC+GGG 0.620979 6_4:+8481362 None:intergenic
ATGTTGGAAACCGAAGAGCT+AGG 0.633551 6_4:-8477831 Msa0974950:CDS
AGTTTACAGCCAAATATCAA+GGG 0.635893 6_4:-8478175 Msa0974950:CDS
TCACTTGCAGCTTCATGGCG+TGG 0.637480 6_4:-8477177 Msa0974950:intron
GAGAGAGATCGTACGTGCGG+TGG 0.655066 6_4:+8481319 None:intergenic
GGCGAAGGTTGAAGAAACGG+CGG 0.668713 6_4:+8481361 None:intergenic
ATGGTTGCGGAAGTTCCGAA+AGG 0.677237 6_4:+8481400 None:intergenic
TAGCAATGATAGCAACAACC+AGG 0.682704 6_4:+8477063 None:intergenic
TCTACTGCATGCTCATAACA+CGG 0.687436 6_4:-8477769 Msa0974950:intron
AGGCATGGCAGATACTATGA+CGG 0.691237 6_4:-8478035 Msa0974950:intron
GCAGCTACAGCTCTTAATGG+AGG 0.704927 6_4:-8481019 Msa0974950:intron
GATTAATGACATCAACTGAG+AGG 0.717585 6_4:-8477896 Msa0974950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTATTTTTTATAAAT+TGG + chr6_4:8476957-8476976 None:intergenic 0.0%
!!! TTTAAAATTGAGTATAAAAT+AGG - chr6_4:8477485-8477504 Msa0974950:intron 10.0%
!! TTAAAATTGAGTATAAAATA+GGG - chr6_4:8477486-8477505 Msa0974950:intron 10.0%
!!! TTTTCGTTTTTAAAAATTTA+AGG - chr6_4:8477884-8477903 Msa0974950:CDS 10.0%
!!! TTTCGTTTTTAAAAATTTAA+GGG - chr6_4:8477885-8477904 Msa0974950:CDS 10.0%
!!! ATCAAAAAAAATATTTTACA+GGG + chr6_4:8477958-8477977 None:intergenic 10.0%
!!! AATCAAAAAAAATATTTTAC+AGG + chr6_4:8477959-8477978 None:intergenic 10.0%
!! TGAAGAAAAAAATAAAAAAT+TGG - chr6_4:8478045-8478064 Msa0974950:CDS 10.0%
!!! CTAATTGATAATTAAATTTT+GGG + chr6_4:8478199-8478218 None:intergenic 10.0%
!!! TCTAATTGATAATTAAATTT+TGG + chr6_4:8478200-8478219 None:intergenic 10.0%
!!! ATACTAGTATTATTATTTTT+TGG + chr6_4:8478659-8478678 None:intergenic 10.0%
!!! ATTTATACTTTTTTTTAGAT+AGG + chr6_4:8479274-8479293 None:intergenic 10.0%
!!! TCTAAAAAAAAGTATAAATT+TGG - chr6_4:8479275-8479294 Msa0974950:intron 10.0%
!!! CTAAAAAAAAGTATAAATTT+GGG - chr6_4:8479276-8479295 Msa0974950:intron 10.0%
!! TTTAAAAATTTAAGGGTTAA+TGG - chr6_4:8477892-8477911 Msa0974950:CDS 15.0%
!!! AAAACAAAAATATTTTACAG+GGG + chr6_4:8478098-8478117 None:intergenic 15.0%
!!! CAAAACAAAAATATTTTACA+GGG + chr6_4:8478097-8478116 None:intergenic 15.0%
!!! TCAAAACAAAAATATTTTAC+AGG + chr6_4:8478096-8478115 None:intergenic 15.0%
!!! ATTTTTTTCTTCAAAAATTC+TGG + chr6_4:8478038-8478057 None:intergenic 15.0%
!!! TCAAAACAAAAATATTTTAC+AGG - chr6_4:8478096-8478115 Msa0974950:CDS 15.0%
!!! CAAAACAAAAATATTTTACA+GGG - chr6_4:8478097-8478116 Msa0974950:CDS 15.0%
!!! AAAACAAAAATATTTTACAG+GGG - chr6_4:8478098-8478117 Msa0974950:CDS 15.0%
!! AATCAAAAAAAATATTTGAC+AGG - chr6_4:8478124-8478143 Msa0974950:CDS 15.0%
!! ATCAAAAAAAATATTTGACA+GGG - chr6_4:8478125-8478144 Msa0974950:CDS 15.0%
!!! TGTTTTTATAGCATTTATAT+GGG + chr6_4:8478455-8478474 None:intergenic 15.0%
!! AAGAGAAATTAGATAAATTT+GGG + chr6_4:8479386-8479405 None:intergenic 15.0%
!! AAAGAGAAATTAGATAAATT+TGG + chr6_4:8479387-8479406 None:intergenic 15.0%
!! ATTTCCAACTATAATATTAA+AGG + chr6_4:8480588-8480607 None:intergenic 15.0%
!!! AATTTTACAATGATCGAATT+AGG - chr6_4:8476900-8476919 Msa0974950:three_prime_UTR 20.0%
!!! ATTTTACAATGATCGAATTA+GGG - chr6_4:8476901-8476920 Msa0974950:three_prime_UTR 20.0%
!!! ACTTTGTTTTGATTTTTCAA+TGG - chr6_4:8477130-8477149 Msa0974950:CDS 20.0%
!! TTACATCCATTATTTAAACT+CGG + chr6_4:8477334-8477353 None:intergenic 20.0%
!!! ATTTCCCTATTCTATTTTTT+GGG + chr6_4:8477679-8477698 None:intergenic 20.0%
!!! AATTTCCCTATTCTATTTTT+TGG + chr6_4:8477680-8477699 None:intergenic 20.0%
!!! AATAGGGAAATTCTTTTATA+AGG - chr6_4:8477688-8477707 Msa0974950:intron 20.0%
!!! ATAGGGAAATTCTTTTATAA+GGG - chr6_4:8477689-8477708 Msa0974950:intron 20.0%
!!! AAACAAAAATATTTTACAGG+GGG + chr6_4:8478099-8478118 None:intergenic 20.0%
!!! AAACAAAAATATTTTACAGG+GGG - chr6_4:8478099-8478118 Msa0974950:CDS 20.0%
!!! TAGCTCCTATTATTTTTATT+TGG - chr6_4:8478384-8478403 Msa0974950:intron 20.0%
!!! GTGTTTTTATAGCATTTATA+TGG + chr6_4:8478456-8478475 None:intergenic 20.0%
!! TCGATTCTACAAAATTAATT+GGG + chr6_4:8478585-8478604 None:intergenic 20.0%
!!! AATTAATTTTGTAGAATCGA+GGG - chr6_4:8478585-8478604 Msa0974950:intron 20.0%
!! TGTTGAATGATATTACTAAT+GGG + chr6_4:8479041-8479060 None:intergenic 20.0%
!! ATGTTGAATGATATTACTAA+TGG + chr6_4:8479042-8479061 None:intergenic 20.0%
!!! TTTTCTTAACTTCACTTTTA+AGG + chr6_4:8480021-8480040 None:intergenic 20.0%
!! GTTTCCTTTAATATTATAGT+TGG - chr6_4:8480581-8480600 Msa0974950:intron 20.0%
!!! AATCAACAAAAAAAACCTTT+TGG + chr6_4:8480780-8480799 None:intergenic 20.0%
!!! ATTTAACAAGTTTGAAGTAT+AGG + chr6_4:8481089-8481108 None:intergenic 20.0%
!!! AAACTTGTTAAATAGTCAAA+AGG - chr6_4:8481096-8481115 Msa0974950:exon 20.0%
!!! CATAAGATACAATGATTTTT+TGG - chr6_4:8481150-8481169 Msa0974950:intron 20.0%
!! TTGTAATTAAAATCTTGCAA+GGG + chr6_4:8481342-8481361 None:intergenic 20.0%
!! TTTGTAATTAAAATCTTGCA+AGG + chr6_4:8481343-8481362 None:intergenic 20.0%
!! CAAATTCAAACATTATTACT+TGG + chr6_4:8481464-8481483 None:intergenic 20.0%
! ACTTAAAAGATGAATCGTTT+GGG - chr6_4:8477303-8477322 Msa0974950:intron 25.0%
! TACATCCATTATTTAAACTC+GGG + chr6_4:8477333-8477352 None:intergenic 25.0%
! TAAGACCCAAAAAATAGAAT+AGG - chr6_4:8477671-8477690 Msa0974950:intron 25.0%
! AAGACCCAAAAAATAGAATA+GGG - chr6_4:8477672-8477691 Msa0974950:intron 25.0%
!! ATTCTTTTATAAGGGTTCAT+AGG - chr6_4:8477697-8477716 Msa0974950:intron 25.0%
!! TTCTTTTATAAGGGTTCATA+GGG - chr6_4:8477698-8477717 Msa0974950:intron 25.0%
!! TTTTGATATGGATATGGATA+TGG + chr6_4:8477756-8477775 None:intergenic 25.0%
! AACAACTGGTTACAAAAAAA+GGG + chr6_4:8477814-8477833 None:intergenic 25.0%
! ATAACACGACAAAAATTAGT+TGG + chr6_4:8478351-8478370 None:intergenic 25.0%
! CCTGACCAAATAAAAATAAT+AGG + chr6_4:8478392-8478411 None:intergenic 25.0%
!!! CCTATTATTTTTATTTGGTC+AGG - chr6_4:8478389-8478408 Msa0974950:intron 25.0%
!!! TATTTTTATTTGGTCAGGAT+TGG - chr6_4:8478394-8478413 Msa0974950:intron 25.0%
! CTCGATTCTACAAAATTAAT+TGG + chr6_4:8478586-8478605 None:intergenic 25.0%
!! CAATTAATTTTGTAGAATCG+AGG - chr6_4:8478584-8478603 Msa0974950:intron 25.0%
!!! TAGAAAAAATGGGGTATTTT+TGG - chr6_4:8478737-8478756 Msa0974950:intron 25.0%
!!! TTTTGGAGAAAAACAATGTA+TGG - chr6_4:8478754-8478773 Msa0974950:intron 25.0%
! AACAATGTATGGTTAGAAAA+AGG - chr6_4:8478765-8478784 Msa0974950:intron 25.0%
! AGAGAAATTAGGAAAATCAA+GGG + chr6_4:8479002-8479021 None:intergenic 25.0%
! TAGAGAAATTAGGAAAATCA+AGG + chr6_4:8479003-8479022 None:intergenic 25.0%
! ATAATCAAGTTAACAATCCA+AGG + chr6_4:8479137-8479156 None:intergenic 25.0%
!! AAAAAGTATAAATTTGGGAG+AGG - chr6_4:8479281-8479300 Msa0974950:intron 25.0%
! AAATTAGATAAATTTGGGAG+AGG + chr6_4:8479381-8479400 None:intergenic 25.0%
! ACCAAAAAGAACAAAAACAA+GGG + chr6_4:8479551-8479570 None:intergenic 25.0%
! TCATGAATATGTTAAACTCA+GGG + chr6_4:8479650-8479669 None:intergenic 25.0%
! TTCATGAATATGTTAAACTC+AGG + chr6_4:8479651-8479670 None:intergenic 25.0%
!!! ATTTTTGAAGCATTAGCTAT+AGG - chr6_4:8479682-8479701 Msa0974950:intron 25.0%
! GAATTTGTAGATTCGAAAAA+TGG - chr6_4:8479913-8479932 Msa0974950:intron 25.0%
! GAAGTTAAGAAAATTGTATC+TGG - chr6_4:8480028-8480047 Msa0974950:intron 25.0%
! GCTCTATAGTAATTTCTATA+TGG - chr6_4:8480442-8480461 Msa0974950:intron 25.0%
! AAAAACTACTACTAGATAGT+TGG + chr6_4:8480523-8480542 None:intergenic 25.0%
!! AACTATCTAGTAGTAGTTTT+TGG - chr6_4:8480522-8480541 Msa0974950:intron 25.0%
! AAACTTTCATAAACCATGTT+AGG + chr6_4:8480666-8480685 None:intergenic 25.0%
! TAACATGGTTTATGAAAGTT+TGG - chr6_4:8480665-8480684 Msa0974950:intron 25.0%
! TTACTTACTTTGTGTATAGT+TGG - chr6_4:8480809-8480828 Msa0974950:intron 25.0%
! GATATTTATGAACCAATATG+AGG + chr6_4:8481131-8481150 None:intergenic 25.0%
!! TTCTTATTCTGATTTGTGAT+TGG - chr6_4:8481182-8481201 Msa0974950:intron 25.0%
!! TCTTATTCTGATTTGTGATT+GGG - chr6_4:8481183-8481202 Msa0974950:intron 25.0%
!! GAGTTCAAACAATATTTCTA+TGG - chr6_4:8481390-8481409 Msa0974950:five_prime_UTR 25.0%
! TTCAAACATTATTACTTGGA+CGG + chr6_4:8481460-8481479 None:intergenic 25.0%
TTGATTGTGAATTGAACAGA+AGG - chr6_4:8476992-8477011 Msa0974950:three_prime_UTR 30.0%
AATTAGTGATTGAGCTTAAG+TGG - chr6_4:8477268-8477287 Msa0974950:intron 30.0%
! CAAACGATTCATCTTTTAAG+TGG + chr6_4:8477304-8477323 None:intergenic 30.0%
CACTTAAAAGATGAATCGTT+TGG - chr6_4:8477302-8477321 Msa0974950:intron 30.0%
CTTAAAAGATGAATCGTTTG+GGG - chr6_4:8477304-8477323 Msa0974950:intron 30.0%
!! ATAATGGATGTAACGATCAT+TGG - chr6_4:8477341-8477360 Msa0974950:intron 30.0%
! GAAATTTTACAACCATTGAC+CGG - chr6_4:8477508-8477527 Msa0974950:intron 30.0%
! AAATTTTACAACCATTGACC+GGG - chr6_4:8477509-8477528 Msa0974950:intron 30.0%
TGAAAACTAAGTTTGAATCC+TGG - chr6_4:8477569-8477588 Msa0974950:intron 30.0%
TAAAATCCAACCAAAACAAG+CGG + chr6_4:8477779-8477798 None:intergenic 30.0%
TTACAAAAAAAGGGATGGAT+TGG + chr6_4:8477805-8477824 None:intergenic 30.0%
GAACAACTGGTTACAAAAAA+AGG + chr6_4:8477815-8477834 None:intergenic 30.0%
TCTACAACATACTATACAGA+GGG + chr6_4:8477847-8477866 None:intergenic 30.0%
ATCTACAACATACTATACAG+AGG + chr6_4:8477848-8477867 None:intergenic 30.0%
AAAATGACCTATATTACAGG+GGG + chr6_4:8477925-8477944 None:intergenic 30.0%
GAAAATGACCTATATTACAG+GGG + chr6_4:8477926-8477945 None:intergenic 30.0%
CGAAAATGACCTATATTACA+GGG + chr6_4:8477927-8477946 None:intergenic 30.0%
!! CCTGTAATATAGGTCATTTT+CGG - chr6_4:8477925-8477944 Msa0974950:intron 30.0%
! TTTTTGAATGACCTATTAGG+GGG + chr6_4:8478068-8478087 None:intergenic 30.0%
! GTTTTTGAATGACCTATTAG+GGG + chr6_4:8478067-8478086 None:intergenic 30.0%
! GGTTTTTGAATGACCTATTA+GGG + chr6_4:8478066-8478085 None:intergenic 30.0%
! TGGTTTTTGAATGACCTATT+AGG + chr6_4:8478065-8478084 None:intergenic 30.0%
! TGGTTTTTGAATGACCTATT+AGG - chr6_4:8478065-8478084 Msa0974950:CDS 30.0%
! GGTTTTTGAATGACCTATTA+GGG - chr6_4:8478066-8478085 Msa0974950:CDS 30.0%
! GTTTTTGAATGACCTATTAG+GGG - chr6_4:8478067-8478086 Msa0974950:CDS 30.0%
! TTTTTGAATGACCTATTAGG+GGG - chr6_4:8478068-8478087 Msa0974950:CDS 30.0%
! ACCTTTCTTTGACTTACTTT+GGG - chr6_4:8478219-8478238 Msa0974950:intron 30.0%
AATGGCATATAGCATGAATT+AGG - chr6_4:8478251-8478270 Msa0974950:intron 30.0%
!! GCTACACATCAATACTTTTT+CGG + chr6_4:8478307-8478326 None:intergenic 30.0%
TAAAATTGCAAGCAAGATAG+AGG - chr6_4:8478626-8478645 Msa0974950:intron 30.0%
AAAATTGCAAGCAAGATAGA+GGG - chr6_4:8478627-8478646 Msa0974950:intron 30.0%
ACATAGTAATACTAGAACAG+TGG - chr6_4:8478685-8478704 Msa0974950:intron 30.0%
!!! TAGAACAGTGGTATTTTTTG+AGG - chr6_4:8478697-8478716 Msa0974950:intron 30.0%
!!! GTATTTTTTGAGGTAAAGAG+TGG - chr6_4:8478707-8478726 Msa0974950:intron 30.0%
TGGATGTGGTTAGAAAAAAT+GGG - chr6_4:8478727-8478746 Msa0974950:intron 30.0%
AGAATCCCGATTAATGTAAT+GGG + chr6_4:8478858-8478877 None:intergenic 30.0%
TAGAATCCCGATTAATGTAA+TGG + chr6_4:8478859-8478878 None:intergenic 30.0%
! AATCGTATATTCGACGATTT+TGG - chr6_4:8478909-8478928 Msa0974950:intron 30.0%
! ATCGTATATTCGACGATTTT+GGG - chr6_4:8478910-8478929 Msa0974950:intron 30.0%
!!! ACGATTTTGGGATTTAAATC+AGG - chr6_4:8478922-8478941 Msa0974950:intron 30.0%
! ACAATCAAACTTTTATCCTC+TGG - chr6_4:8478968-8478987 Msa0974950:intron 30.0%
GAGAAATTAGGAAAATCAAG+GGG + chr6_4:8479001-8479020 None:intergenic 30.0%
ACAGTAGTCATAGAGAAATT+AGG + chr6_4:8479013-8479032 None:intergenic 30.0%
!! AACATTTTAGCATGTTGTCA+GGG - chr6_4:8479057-8479076 Msa0974950:intron 30.0%
TAACAATCCAAGGAAATGAA+GGG + chr6_4:8479127-8479146 None:intergenic 30.0%
TTAACAATCCAAGGAAATGA+AGG + chr6_4:8479128-8479147 None:intergenic 30.0%
!!! ACTCTGAGACTCTTAATTTT+AGG - chr6_4:8479341-8479360 Msa0974950:intron 30.0%
!! CTTCAAGTTGGAAGATTAAT+TGG - chr6_4:8479462-8479481 Msa0974950:intron 30.0%
GACCAAAAAGAACAAAAACA+AGG + chr6_4:8479552-8479571 None:intergenic 30.0%
!! GTTCTTTTTGGTCAATTGAT+TGG - chr6_4:8479559-8479578 Msa0974950:intron 30.0%
GCAAAAGAAGCAAAAAGTTT+CGG - chr6_4:8479783-8479802 Msa0974950:intron 30.0%
! TTTTCTTCCTTTCAGAAAGA+TGG - chr6_4:8479850-8479869 Msa0974950:intron 30.0%
AATAAAGCCATCTTTCTGAA+AGG + chr6_4:8479860-8479879 None:intergenic 30.0%
AAGTTTACAGCCAAATATCA+AGG - chr6_4:8479949-8479968 Msa0974950:intron 30.0%
AGTTTACAGCCAAATATCAA+GGG - chr6_4:8479950-8479969 Msa0974950:intron 30.0%
! TTTGCTGTGAAAATACTATG+AGG - chr6_4:8480149-8480168 Msa0974950:intron 30.0%
ATACCTAATGCAATCACAAA+GGG + chr6_4:8480191-8480210 None:intergenic 30.0%
!! CGGTAATCTTTTCTATTTCT+TGG - chr6_4:8480376-8480395 Msa0974950:intron 30.0%
AATTTCTATATGGCTTATGC+TGG - chr6_4:8480452-8480471 Msa0974950:intron 30.0%
GAAATTAAAAACCATTCTCG+TGG - chr6_4:8480603-8480622 Msa0974950:intron 30.0%
!! GGATTTGTTAATTCCTAACA+TGG - chr6_4:8480650-8480669 Msa0974950:intron 30.0%
TTGAATTTCAGCTCAAGTAA+AGG - chr6_4:8480724-8480743 Msa0974950:intron 30.0%
!!! TTTTTTTCTCCGAATTGTAG+TGG - chr6_4:8480889-8480908 Msa0974950:intron 30.0%
AAACTTTCACCACTACAATT+CGG + chr6_4:8480901-8480920 None:intergenic 30.0%
! GTTTCTCTTTGATTTACTGA+TGG - chr6_4:8480917-8480936 Msa0974950:intron 30.0%
TTATGACAAACATGTCTAGA+AGG - chr6_4:8480998-8481017 Msa0974950:intron 30.0%
!! TTACCTGCATTCTATTTCTA+TGG - chr6_4:8481426-8481445 Msa0974950:five_prime_UTR 30.0%
CAATGATCGAATTAGGGTTT+CGG - chr6_4:8476907-8476926 Msa0974950:three_prime_UTR 35.0%
AGAATGAGTAACGTGTTTGA+AGG - chr6_4:8477031-8477050 Msa0974950:exon 35.0%
GTTCTGTGATTGATGCTTAT+TGG - chr6_4:8477158-8477177 Msa0974950:CDS 35.0%
GGAAACCCGAGTTTAAATAA+TGG - chr6_4:8477325-8477344 Msa0974950:intron 35.0%
GACACTAGTAATCCAAAGTT+CGG + chr6_4:8477388-8477407 None:intergenic 35.0%
AGTGTCCCATTTCTTAGAAA+CGG - chr6_4:8477402-8477421 Msa0974950:intron 35.0%
TTTCATGAACGATTCGTAAG+TGG + chr6_4:8477554-8477573 None:intergenic 35.0%
AGCTAATGATTGTTTCATCC+AGG + chr6_4:8477590-8477609 None:intergenic 35.0%
!! AAGCGGTTTTGATATGGATA+TGG + chr6_4:8477762-8477781 None:intergenic 35.0%
!! CAAAACAAGCGGTTTTGATA+TGG + chr6_4:8477768-8477787 None:intergenic 35.0%
! CATATCAAAACCGCTTGTTT+TGG - chr6_4:8477766-8477785 Msa0974950:intron 35.0%
ACTGGTTACAAAAAAAGGGA+TGG + chr6_4:8477810-8477829 None:intergenic 35.0%
! TGTTTTACCCCCTGTAATAT+AGG - chr6_4:8477915-8477934 Msa0974950:CDS 35.0%
CCGAAAATGACCTATATTAC+AGG + chr6_4:8477928-8477947 None:intergenic 35.0%
!!! TTTTGATTTACCCCCCTAAT+AGG - chr6_4:8478001-8478020 Msa0974950:intron 35.0%
! TTTTGAATGACCTATTAGGG+GGG + chr6_4:8478069-8478088 None:intergenic 35.0%
! TTTTGAATGACCTATTAGGG+GGG - chr6_4:8478069-8478088 Msa0974950:CDS 35.0%
!!! TTTTGATTTACCCCCCTAAT+AGG + chr6_4:8478001-8478020 None:intergenic 35.0%
TATTTGACAGGGTGTAAAAC+CGG - chr6_4:8478136-8478155 Msa0974950:CDS 35.0%
! GACCTTTCTTTGACTTACTT+TGG - chr6_4:8478218-8478237 Msa0974950:intron 35.0%
ACCCAAAGTAAGTCAAAGAA+AGG + chr6_4:8478223-8478242 None:intergenic 35.0%
! TTTGACTTACTTTGGGTAGT+TGG - chr6_4:8478226-8478245 Msa0974950:intron 35.0%
TACTTTGGGTAGTTGGATAA+TGG - chr6_4:8478233-8478252 Msa0974950:intron 35.0%
ATACATGCCAACAACTGAAA+GGG + chr6_4:8478278-8478297 None:intergenic 35.0%
!!! CACATCAATACTTTTTCGGA+AGG + chr6_4:8478303-8478322 None:intergenic 35.0%
!! AAGTATTGATGTGTAGCTTC+TGG - chr6_4:8478310-8478329 Msa0974950:CDS 35.0%
TAATAGGAGCTAGAGAGATT+TGG + chr6_4:8478376-8478395 None:intergenic 35.0%
GTGGATGTGGTTAGAAAAAA+TGG - chr6_4:8478726-8478745 Msa0974950:intron 35.0%
GGATGTGGTTAGAAAAAATG+GGG - chr6_4:8478728-8478747 Msa0974950:intron 35.0%
! AGTGTCATCTACACATGTTT+TGG - chr6_4:8478818-8478837 Msa0974950:intron 35.0%
! GTGTCATCTACACATGTTTT+GGG - chr6_4:8478819-8478838 Msa0974950:intron 35.0%
!! TAGGAAAATCAAGGGGTATT+AGG + chr6_4:8478994-8479013 None:intergenic 35.0%
!! CAACATTTTAGCATGTTGTC+AGG - chr6_4:8479056-8479075 Msa0974950:intron 35.0%
AGAGAATTATCACCCAACAT+CGG + chr6_4:8479202-8479221 None:intergenic 35.0%
CAGAGTCTACTAGAATGATT+TGG + chr6_4:8479327-8479346 None:intergenic 35.0%
CCAACTTGAAGAAACAAACA+TGG + chr6_4:8479453-8479472 None:intergenic 35.0%
! CCATGTTTGTTTCTTCAAGT+TGG - chr6_4:8479450-8479469 Msa0974950:intron 35.0%
!!! GCCCTTGTTTTTGTTCTTTT+TGG - chr6_4:8479547-8479566 Msa0974950:intron 35.0%
!! CTTTTTGGTCAATTGATTGG+TGG - chr6_4:8479562-8479581 Msa0974950:intron 35.0%
! AGTGTGCATTTTACATGACA+AGG - chr6_4:8479608-8479627 Msa0974950:intron 35.0%
! GTGTGCATTTTACATGACAA+GGG - chr6_4:8479609-8479628 Msa0974950:intron 35.0%
GCAAAAAGTTTCGGAAGTAA+AGG - chr6_4:8479792-8479811 Msa0974950:intron 35.0%
!!! GATGGCTTTATTTTTTCTGC+AGG - chr6_4:8479868-8479887 Msa0974950:intron 35.0%
TACCTAATGCAATCACAAAG+GGG + chr6_4:8480190-8480209 None:intergenic 35.0%
GATACCTAATGCAATCACAA+AGG + chr6_4:8480192-8480211 None:intergenic 35.0%
GATTAATGACATCAACTGAG+AGG - chr6_4:8480229-8480248 Msa0974950:intron 35.0%
! AATAGAAACACCTAGCTCTT+CGG + chr6_4:8480307-8480326 None:intergenic 35.0%
TGGTCATGATTATGAGTTTC+TGG - chr6_4:8480396-8480415 Msa0974950:intron 35.0%
GCTTATGCTGGAAATTTCTT+GGG - chr6_4:8480464-8480483 Msa0974950:intron 35.0%
! ATCTCTCAATTTTCGACATC+TGG - chr6_4:8480558-8480577 Msa0974950:intron 35.0%
! TCTCTCAATTTTCGACATCT+GGG - chr6_4:8480559-8480578 Msa0974950:intron 35.0%
! CACTCAACAACTTAAGCTTT+TGG - chr6_4:8480629-8480648 Msa0974950:intron 35.0%
AATTTCAGCTCAAGTAAAGG+TGG - chr6_4:8480727-8480746 Msa0974950:intron 35.0%
ATTTCAGCTCAAGTAAAGGT+GGG - chr6_4:8480728-8480747 Msa0974950:intron 35.0%
TAAAACATGGACGACATATC+GGG + chr6_4:8480754-8480773 None:intergenic 35.0%
CTAAAACATGGACGACATAT+CGG + chr6_4:8480755-8480774 None:intergenic 35.0%
! AACCTTTTGGACCTAAAACA+TGG + chr6_4:8480767-8480786 None:intergenic 35.0%
AACAAGAACAAGTGGATCAT+TGG - chr6_4:8481024-8481043 Msa0974950:CDS 35.0%
!! GCAAGTTAACTTGATGATGT+TGG - chr6_4:8481235-8481254 Msa0974950:intron 35.0%
TTACAAAACCAGATTCTTCG+TGG - chr6_4:8481356-8481375 Msa0974950:five_prime_UTR 35.0%
ACACCATAGAAATAGAATGC+AGG + chr6_4:8481432-8481451 None:intergenic 35.0%
CAACACCAAACTTCTCCTTT+CGG - chr6_4:8476710-8476729 Msa0974950:three_prime_UTR 40.0%
AAGTTCCGAAAGGAGAAGTT+TGG + chr6_4:8476718-8476737 None:intergenic 40.0%
TAGTAATCCAAAGTTCGGTC+AGG + chr6_4:8477383-8477402 None:intergenic 40.0%
TCCCATTTCTTAGAAACGGT+GGG - chr6_4:8477406-8477425 Msa0974950:intron 40.0%
! ACCCACCGTTTCTAAGAAAT+GGG + chr6_4:8477410-8477429 None:intergenic 40.0%
! AACCCACCGTTTCTAAGAAA+TGG + chr6_4:8477411-8477430 None:intergenic 40.0%
GGGTTAAGACCTATGAAATC+CGG - chr6_4:8477426-8477445 Msa0974950:intron 40.0%
ACTACGTATCCGGATTTCAT+AGG + chr6_4:8477438-8477457 None:intergenic 40.0%
TGAAATCCGGATACGTAGTA+TGG - chr6_4:8477439-8477458 Msa0974950:intron 40.0%
GAAATCCGGATACGTAGTAT+GGG - chr6_4:8477440-8477459 Msa0974950:intron 40.0%
AAATCCGGATACGTAGTATG+GGG - chr6_4:8477441-8477460 Msa0974950:intron 40.0%
CATATCTCATGTCCGAACTT+TGG - chr6_4:8477613-8477632 Msa0974950:intron 40.0%
ATGTCCGAACTTTGGATTAC+CGG - chr6_4:8477621-8477640 Msa0974950:intron 40.0%
AACACCGGTAATCCAAAGTT+CGG + chr6_4:8477628-8477647 None:intergenic 40.0%
! GTTTCTAGAGAATGCAACAC+CGG + chr6_4:8477643-8477662 None:intergenic 40.0%
! TTGCATTCTCTAGAAACCAG+AGG - chr6_4:8477646-8477665 Msa0974950:intron 40.0%
! TGCATTCTCTAGAAACCAGA+GGG - chr6_4:8477647-8477666 Msa0974950:intron 40.0%
!!! TTTTTTGGGTCTTAACCCTC+TGG + chr6_4:8477665-8477684 None:intergenic 40.0%
!!! TCAAAACCGCTTGTTTTGGT+TGG - chr6_4:8477770-8477789 Msa0974950:CDS 40.0%
ATACTATACAGAGGGTTCTG+AGG + chr6_4:8477839-8477858 None:intergenic 40.0%
CCTGTAATACAGGTCATTTC+CGG + chr6_4:8478158-8478177 None:intergenic 40.0%
CGGAAATGACCTGTATTACA+GGG - chr6_4:8478156-8478175 Msa0974950:CDS 40.0%
GGAAATGACCTGTATTACAG+GGG - chr6_4:8478157-8478176 Msa0974950:CDS 40.0%
GAAATGACCTGTATTACAGG+GGG - chr6_4:8478158-8478177 Msa0974950:CDS 40.0%
AAATGACCTGTATTACAGGG+GGG - chr6_4:8478159-8478178 Msa0974950:CDS 40.0%
ATTAGGACCCTTTCAGTTGT+TGG - chr6_4:8478268-8478287 Msa0974950:intron 40.0%
GATACATGCCAACAACTGAA+AGG + chr6_4:8478279-8478298 None:intergenic 40.0%
CCAGGTGTATTTATAGCATC+AGG + chr6_4:8478478-8478497 None:intergenic 40.0%
CCTGATGCTATAAATACACC+TGG - chr6_4:8478475-8478494 Msa0974950:intron 40.0%
! ATGCTTTTAAGCGGAAGCAA+AGG - chr6_4:8478501-8478520 Msa0974950:intron 40.0%
TGGGTAAGATCCTTCAATCT+TGG + chr6_4:8478566-8478585 None:intergenic 40.0%
! TTTGAGGTAAAGAGTGGATG+TGG - chr6_4:8478713-8478732 Msa0974950:intron 40.0%
!! CCGATTAATGTAATGGGCTT+GGG + chr6_4:8478852-8478871 None:intergenic 40.0%
CCCAAGCCCATTACATTAAT+CGG - chr6_4:8478849-8478868 Msa0974950:intron 40.0%
CCAAGCCCATTACATTAATC+GGG - chr6_4:8478850-8478869 Msa0974950:intron 40.0%
ATTCTATACGCGATCTGGAT+CGG - chr6_4:8478873-8478892 Msa0974950:intron 40.0%
AATCCAAGGAAATGAAGGGT+GGG + chr6_4:8479123-8479142 None:intergenic 40.0%
CATAACCAATTGCCGATGTT+GGG - chr6_4:8479187-8479206 Msa0974950:intron 40.0%
GAGGTGATGTCTTATAGTCT+TGG - chr6_4:8479300-8479319 Msa0974950:intron 40.0%
CAAGGTCTGACACAATAGTA+AGG + chr6_4:8479419-8479438 None:intergenic 40.0%
CTTACTATTGTGTCAGACCT+TGG - chr6_4:8479417-8479436 Msa0974950:intron 40.0%
AACATGGCATAGAGATTCCA+AGG + chr6_4:8479437-8479456 None:intergenic 40.0%
!! TGATTGGTGGAAGCATTGTA+AGG - chr6_4:8479575-8479594 Msa0974950:intron 40.0%
AAAGTTTCGGAAGTAAAGGC+TGG - chr6_4:8479796-8479815 Msa0974950:intron 40.0%
AATTGATGAAGCAGAGGCTT+TGG - chr6_4:8479819-8479838 Msa0974950:intron 40.0%
GATTCGAAAAATGGACCTTG+AGG - chr6_4:8479922-8479941 Msa0974950:intron 40.0%
! AGAAGTACGCCCTTGATATT+TGG + chr6_4:8479962-8479981 None:intergenic 40.0%
GAAACTTGAATCCTTCTGCA+CGG - chr6_4:8480050-8480069 Msa0974950:intron 40.0%
AAACTTGAATCCTTCTGCAC+GGG - chr6_4:8480051-8480070 Msa0974950:intron 40.0%
TGAATTGTTGGAATCAGGCA+TGG - chr6_4:8480075-8480094 Msa0974950:intron 40.0%
ATCCCCTTTGTGATTGCATT+AGG - chr6_4:8480185-8480204 Msa0974950:intron 40.0%
GTGAACGAGTTAAGGATAGT+AGG - chr6_4:8480265-8480284 Msa0974950:intron 40.0%
GGATAGTAGGAGAACAATGT+TGG - chr6_4:8480278-8480297 Msa0974950:intron 40.0%
TCTACTGCATGCTCATAACA+CGG - chr6_4:8480356-8480375 Msa0974950:intron 40.0%
GGCTTATGCTGGAAATTTCT+TGG - chr6_4:8480463-8480482 Msa0974950:intron 40.0%
! CGATATGTCGTCCATGTTTT+AGG - chr6_4:8480753-8480772 Msa0974950:intron 40.0%
!! GTCCATGTTTTAGGTCCAAA+AGG - chr6_4:8480762-8480781 Msa0974950:intron 40.0%
CTTTGTGTATAGTTGGATCG+TGG - chr6_4:8480816-8480835 Msa0974950:intron 40.0%
GAAGGATGAACAAGAACAAG+TGG - chr6_4:8481016-8481035 Msa0974950:intron 40.0%
TAGCAATGATAGCAACAACC+AGG + chr6_4:8481065-8481084 None:intergenic 40.0%
GAACCAATATGAGGACAAGT+AGG + chr6_4:8481122-8481141 None:intergenic 40.0%
!! ATGATGTTGGCTTCGTTGAA+GGG - chr6_4:8481248-8481267 Msa0974950:intron 40.0%
CAATGGCATGTGTCTTATGT+CGG - chr6_4:8481275-8481294 Msa0974950:intron 40.0%
AATGGCATGTGTCTTATGTC+GGG - chr6_4:8481276-8481295 Msa0974950:intron 40.0%
!! CGAAAGGAGAAGTTTGGTGT+TGG + chr6_4:8476712-8476731 None:intergenic 45.0%
ATTTGACCGGAGAATGGTTG+CGG + chr6_4:8476741-8476760 None:intergenic 45.0%
ACTGCAGCTACAGCTCTTAA+TGG - chr6_4:8477103-8477122 Msa0974950:CDS 45.0%
ACTTTCTCCTGACCGAACTT+TGG - chr6_4:8477373-8477392 Msa0974950:intron 45.0%
GTCCCATTTCTTAGAAACGG+TGG - chr6_4:8477405-8477424 Msa0974950:intron 45.0%
AGTCATTAACCACTTGAGCC+CGG + chr6_4:8477530-8477549 None:intergenic 45.0%
CCGGAAATGACCTGTATTAC+AGG - chr6_4:8478155-8478174 Msa0974950:CDS 45.0%
! ACCTGGCGAATGCTTTTAAG+CGG - chr6_4:8478492-8478511 Msa0974950:intron 45.0%
GAGATCGCAACCAAGATTGA+AGG - chr6_4:8478553-8478572 Msa0974950:intron 45.0%
!! CCCGATTAATGTAATGGGCT+TGG + chr6_4:8478853-8478872 None:intergenic 45.0%
CAAGAAACTTGGAGGGTTTC+AGG + chr6_4:8479096-8479115 None:intergenic 45.0%
CTGAAACCCTCCAAGTTTCT+TGG - chr6_4:8479094-8479113 Msa0974950:intron 45.0%
GGGAAACCAAGAAACTTGGA+GGG + chr6_4:8479103-8479122 None:intergenic 45.0%
TGGGAAACCAAGAAACTTGG+AGG + chr6_4:8479104-8479123 None:intergenic 45.0%
TTTCCCACCCTTCATTTCCT+TGG - chr6_4:8479117-8479136 Msa0974950:intron 45.0%
CAATCCAAGGAAATGAAGGG+TGG + chr6_4:8479124-8479143 None:intergenic 45.0%
CCAACATCGGCAATTGGTTA+TGG + chr6_4:8479189-8479208 None:intergenic 45.0%
CCATAACCAATTGCCGATGT+TGG - chr6_4:8479186-8479205 Msa0974950:intron 45.0%
TATCACCCAACATCGGCAAT+TGG + chr6_4:8479195-8479214 None:intergenic 45.0%
! TTGGGTGGGGAATGGTTTTT+GGG + chr6_4:8479516-8479535 None:intergenic 45.0%
! ATTGGGTGGGGAATGGTTTT+TGG + chr6_4:8479517-8479536 None:intergenic 45.0%
!! CAAGGGCATCAACCATGATT+GGG + chr6_4:8479534-8479553 None:intergenic 45.0%
!! ACAAGGGCATCAACCATGAT+TGG + chr6_4:8479535-8479554 None:intergenic 45.0%
GCTGTAAACTTCTTGCCTCA+AGG + chr6_4:8479940-8479959 None:intergenic 45.0%
GCGTACTTCTTGCTAAGTTG+CGG - chr6_4:8479972-8479991 Msa0974950:intron 45.0%
CGTACTTCTTGCTAAGTTGC+GGG - chr6_4:8479973-8479992 Msa0974950:intron 45.0%
AACAATTCATCCCGTGCAGA+AGG + chr6_4:8480064-8480083 None:intergenic 45.0%
TTCTGCACGGGATGAATTGT+TGG - chr6_4:8480063-8480082 Msa0974950:intron 45.0%
CGGGATGAATTGTTGGAATC+AGG - chr6_4:8480070-8480089 Msa0974950:intron 45.0%
AGGCATGGCAGATACTATGA+CGG - chr6_4:8480090-8480109 Msa0974950:intron 45.0%
ACTGAGAGGTTGAACAAGAC+TGG - chr6_4:8480243-8480262 Msa0974950:intron 45.0%
CAAGACTGGTGAACGAGTTA+AGG - chr6_4:8480257-8480276 Msa0974950:intron 45.0%
ATGTTGGAAACCGAAGAGCT+AGG - chr6_4:8480294-8480313 Msa0974950:intron 45.0%
GTCGCTGTGAATGCAAATCT+TGG + chr6_4:8480332-8480351 None:intergenic 45.0%
TATGCTCACTTGCAGCTTCA+TGG - chr6_4:8480943-8480962 Msa0974950:intron 45.0%
CATGGCGTGGATGATAACAT+AGG - chr6_4:8480961-8480980 Msa0974950:intron 45.0%
AGGCCTACTTGTCCTCATAT+TGG - chr6_4:8481116-8481135 Msa0974950:five_prime_UTR 45.0%
!! GATGATGTTGGCTTCGTTGA+AGG - chr6_4:8481247-8481266 Msa0974950:intron 45.0%
CGACATAAGACACATGCCAT+TGG + chr6_4:8481277-8481296 None:intergenic 45.0%
CAGCATAACCACGAAGAATC+TGG + chr6_4:8481367-8481386 None:intergenic 45.0%
ATGGTTGCGGAAGTTCCGAA+AGG + chr6_4:8476728-8476747 None:intergenic 50.0%
GAACTTCCGCAACCATTCTC+CGG - chr6_4:8476732-8476751 Msa0974950:three_prime_UTR 50.0%
CGGGAAATTTGACCGGAGAA+TGG + chr6_4:8476747-8476766 None:intergenic 50.0%
GAAACGGCGGGAAATTTGAC+CGG + chr6_4:8476754-8476773 None:intergenic 50.0%
GACGGCGAAGGTTGAAGAAA+CGG + chr6_4:8476770-8476789 None:intergenic 50.0%
AGAGAGAGAGATCGTACGTG+CGG + chr6_4:8476812-8476831 None:intergenic 50.0%
GCAGCTACAGCTCTTAATGG+AGG - chr6_4:8477106-8477125 Msa0974950:CDS 50.0%
ACGTCCCCATACTACGTATC+CGG + chr6_4:8477448-8477467 None:intergenic 50.0%
AGGGTTCATAGGGTTGCTCA+TGG - chr6_4:8477708-8477727 Msa0974950:intron 50.0%
!! AGGGTTCTGAGGTGAACAAC+TGG + chr6_4:8477828-8477847 None:intergenic 50.0%
GCTTTACCCCCCTGTAATAC+AGG + chr6_4:8478168-8478187 None:intergenic 50.0%
!! TCCGCTTAAAAGCATTCGCC+AGG + chr6_4:8478496-8478515 None:intergenic 50.0%
AAGCGGAAGCAAAGGTTGTC+AGG - chr6_4:8478509-8478528 Msa0974950:intron 50.0%
AGCGGAAGCAAAGGTTGTCA+GGG - chr6_4:8478510-8478529 Msa0974950:intron 50.0%
!! ATGTAATGGGCTTGGGCGTT+TGG + chr6_4:8478845-8478864 None:intergenic 50.0%
TCGGGATTCTATACGCGATC+TGG - chr6_4:8478868-8478887 Msa0974950:intron 50.0%
!! ATCAAGGGGTATTAGGCCAG+AGG + chr6_4:8478987-8479006 None:intergenic 50.0%
GGGTGGGAAACCAAGAAACT+TGG + chr6_4:8479107-8479126 None:intergenic 50.0%
!! AATGGTTTTTGGGGGGAAGG+GGG + chr6_4:8479506-8479525 None:intergenic 50.0%
!! GAATGGTTTTTGGGGGGAAG+GGG + chr6_4:8479507-8479526 None:intergenic 50.0%
!! GGAATGGTTTTTGGGGGGAA+GGG + chr6_4:8479508-8479527 None:intergenic 50.0%
! TGGGTGGGGAATGGTTTTTG+GGG + chr6_4:8479515-8479534 None:intergenic 50.0%
AACCATTCCCCACCCAATCA+TGG - chr6_4:8479519-8479538 Msa0974950:intron 50.0%
AACCATGATTGGGTGGGGAA+TGG + chr6_4:8479524-8479543 None:intergenic 50.0%
GCATCAACCATGATTGGGTG+GGG + chr6_4:8479529-8479548 None:intergenic 50.0%
GGCATCAACCATGATTGGGT+GGG + chr6_4:8479530-8479549 None:intergenic 50.0%
GGCTGGAATTGATGAAGCAG+AGG - chr6_4:8479813-8479832 Msa0974950:intron 50.0%
GTTGAGTGAAGCCACGAGAA+TGG + chr6_4:8480617-8480636 None:intergenic 50.0%
CTTCGTTGAAGGGACACCAA+TGG - chr6_4:8481258-8481277 Msa0974950:intron 50.0%
GCGAAGGTTGAAGAAACGGC+GGG + chr6_4:8476766-8476785 None:intergenic 55.0%
GGCGAAGGTTGAAGAAACGG+CGG + chr6_4:8476767-8476786 None:intergenic 55.0%
AACCATTGACCGGGCTCAAG+TGG - chr6_4:8477518-8477537 Msa0974950:intron 55.0%
AACCACTTGAGCCCGGTCAA+TGG + chr6_4:8477523-8477542 None:intergenic 55.0%
GCGGAAGCAAAGGTTGTCAG+GGG - chr6_4:8478511-8478530 Msa0974950:intron 55.0%
!! GGGAATGGTTTTTGGGGGGA+AGG + chr6_4:8479509-8479528 None:intergenic 55.0%
!! GGTGGGGAATGGTTTTTGGG+GGG + chr6_4:8479513-8479532 None:intergenic 55.0%
!! GGGTGGGGAATGGTTTTTGG+GGG + chr6_4:8479514-8479533 None:intergenic 55.0%
GGGCATCAACCATGATTGGG+TGG + chr6_4:8479531-8479550 None:intergenic 55.0%
TCACTTGCAGCTTCATGGCG+TGG - chr6_4:8480948-8480967 Msa0974950:intron 55.0%
AGATCGTACGTGCGGTGGTC+GGG + chr6_4:8476804-8476823 None:intergenic 60.0%
GAGATCGTACGTGCGGTGGT+CGG + chr6_4:8476805-8476824 None:intergenic 60.0%
GAGAGAGATCGTACGTGCGG+TGG + chr6_4:8476809-8476828 None:intergenic 60.0%
TGGCTGCATTGTGCTCGTCC+TGG - chr6_4:8481044-8481063 Msa0974950:CDS 60.0%
GATCGTACGTGCGGTGGTCG+GGG + chr6_4:8476803-8476822 None:intergenic 65.0%
! GGAAGCGGAGGTGACGGCGA+AGG + chr6_4:8476782-8476801 None:intergenic 70.0%
GGTCGGGGAAGCGGAGGTGA+CGG + chr6_4:8476788-8476807 None:intergenic 70.0%
ACGTGCGGTGGTCGGGGAAG+CGG + chr6_4:8476797-8476816 None:intergenic 70.0%
TGCGGTGGTCGGGGAAGCGG+AGG + chr6_4:8476794-8476813 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 8476663 8481484 8476663 ID=Msa0974950;Name=Msa0974950
chr6_4 mRNA 8476663 8481484 8476663 ID=Msa0974950-mRNA-1;Parent=Msa0974950;Name=Msa0974950-mRNA-1;_AED=0.07;_eAED=0.07;_QI=175|1|1|1|0.8|0.66|6|374|221
chr6_4 exon 8476663 8477189 8476663 ID=Msa0974950-mRNA-1:exon:3088;Parent=Msa0974950-mRNA-1
chr6_4 exon 8477770 8477940 8477770 ID=Msa0974950-mRNA-1:exon:3087;Parent=Msa0974950-mRNA-1
chr6_4 exon 8478036 8478224 8478036 ID=Msa0974950-mRNA-1:exon:3086;Parent=Msa0974950-mRNA-1
chr6_4 exon 8478307 8478365 8478307 ID=Msa0974950-mRNA-1:exon:3085;Parent=Msa0974950-mRNA-1
chr6_4 exon 8481020 8481136 8481020 ID=Msa0974950-mRNA-1:exon:3084;Parent=Msa0974950-mRNA-1
chr6_4 exon 8481333 8481484 8481333 ID=Msa0974950-mRNA-1:exon:3083;Parent=Msa0974950-mRNA-1
chr6_4 five_prime_UTR 8481333 8481484 8481333 ID=Msa0974950-mRNA-1:five_prime_utr;Parent=Msa0974950-mRNA-1
chr6_4 five_prime_UTR 8481114 8481136 8481114 ID=Msa0974950-mRNA-1:five_prime_utr;Parent=Msa0974950-mRNA-1
chr6_4 CDS 8481020 8481113 8481020 ID=Msa0974950-mRNA-1:cds;Parent=Msa0974950-mRNA-1
chr6_4 CDS 8478307 8478365 8478307 ID=Msa0974950-mRNA-1:cds;Parent=Msa0974950-mRNA-1
chr6_4 CDS 8478036 8478224 8478036 ID=Msa0974950-mRNA-1:cds;Parent=Msa0974950-mRNA-1
chr6_4 CDS 8477770 8477940 8477770 ID=Msa0974950-mRNA-1:cds;Parent=Msa0974950-mRNA-1
chr6_4 CDS 8477037 8477189 8477037 ID=Msa0974950-mRNA-1:cds;Parent=Msa0974950-mRNA-1
chr6_4 three_prime_UTR 8476663 8477036 8476663 ID=Msa0974950-mRNA-1:three_prime_utr;Parent=Msa0974950-mRNA-1
Gene Sequence

>Msa0974950

ATGAGTAACGTGTTTGAAGGATACGAACGTCAGTACTGTGAACTTTCTGCTAATTTGTCAAAAAAATGCACTGCAGCTACAGCTCTTAATGGAGAGCAAAAGAAGCAAAAAGTTTCGGAAGTAAAGGCTGGAATTGATGAAGCAGAGGCTTTGATTCGAAAAATGGACCTTGAGGCAAGAAGTTTACAGCCAAATATCAAGGGCGTACTTCTTGCTAAGTTGCGGGAGTATAAATCAGATCTAAACAACCTTAAAAGTGAAGTTAAGAAAATTGTATCTGGAAACTTGAATCCTTCTGCACGGGATGAATTGTTGGAATCAGGCATGGCAGATACTATGACGGTATCAGCTGATCAGAGAACAAGATTAATGACATCAACTGAGAGGTTGAACAAGACTGGTGAACGAGTTAAGGATAGTAGGAGAACAATGTTGGAAACCGAAGAGCTAGGTGTTTCTATTCTCCAAGATTTGCATTCACAGCGACAATCTCTACTGCATGCTCATAACACGCTTCATGGCGTGGATGATAACATAGGCAAGAGCAAGAAAATTATGACAAACATGTCTAGAAGGATGAACAAGAACAAGTGGATCATTGGCTGCATTGTGCTCGTCCTGGTTGTTGCTATCATTGCTATCCTATACTTCAAACTTGTTAAATAG

Protein sequence

>Msa0974950

MSNVFEGYERQYCELSANLSKKCTAATALNGEQKKQKVSEVKAGIDEAEALIRKMDLEARSLQPNIKGVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADTMTVSADQRTRLMTSTERLNKTGERVKDSRRTMLETEELGVSILQDLHSQRQSLLHAHNTLHGVDDNIGKSKKIMTNMSRRMNKNKWIIGCIVLVLVVAIIAILYFKLVK*