AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0719980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0719980 MtrunA17_Chr5g0410661 83.302 539 27 5 1 534 1 481 0.0 841
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0719980 AT1G32200.1 57.113 471 137 5 64 533 52 458 0.0 538
Msa0719980 AT1G32200.2 57.113 471 137 5 64 533 52 458 0.0 538

Find 139 sgRNAs with CRISPR-Local

Find 525 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGATACCTTGTTCATTTC+TGG 0.097282 5_1:+15697939 None:intergenic
AAGGCTCTCTCTTTGCTTTA+TGG 0.111318 5_1:+15696304 None:intergenic
TTGTTTGCAGATGTTCTTTC+TGG 0.133137 5_1:-15697113 Msa0719980:intron
TAAAGAAATTTCTGCTAATA+TGG 0.208936 5_1:-15697995 Msa0719980:CDS
CTAAGGGACGAATATAATTT+TGG 0.210411 5_1:+15696262 None:intergenic
AAAATTGGTAAAATTATATT+TGG 0.216776 5_1:+15690416 None:intergenic
TTACTATCTTCGCTCTTTCT+AGG 0.218085 5_1:+15694288 None:intergenic
TCTTCTTCTGTAACAACTTC+TGG 0.218853 5_1:-15698078 Msa0719980:CDS
CAGATACCAACCTTAGAATT+TGG 0.237376 5_1:+15694225 None:intergenic
GGAGTGGATCACAAATAATT+TGG 0.242672 5_1:-15692883 Msa0719980:CDS
GTGTCGGAAAAGCTTATTTC+TGG 0.251355 5_1:+15691759 None:intergenic
TGGTAATGGTACATATAATA+AGG 0.262871 5_1:+15694245 None:intergenic
TGTACCATTACCAAATTCTA+AGG 0.312534 5_1:-15694235 Msa0719980:intron
CTGAAACAGATTACTGATAA+TGG 0.323405 5_1:+15690512 None:intergenic
GTCGATCCCTACCACCGCTT+GGG 0.326320 5_1:+15692855 None:intergenic
ATATTAGCAGAAATTTCTTT+AGG 0.327144 5_1:+15697997 None:intergenic
CAATACAATCTCATCTGCTT+TGG 0.332538 5_1:+15696563 None:intergenic
CGAAGGCTTGTCGATCATTC+AGG 0.340682 5_1:-15691986 Msa0719980:CDS
CTCTTCCATTTGAATGAAAA+GGG 0.362801 5_1:+15694432 None:intergenic
GCTCTTCCATTTGAATGAAA+AGG 0.376426 5_1:+15694431 None:intergenic
TTCCATCCCTTCAGCAATAG+TGG 0.377040 5_1:+15697055 None:intergenic
TACTATCTTCGCTCTTTCTA+GGG 0.377332 5_1:+15694289 None:intergenic
CATAATGCCTCCTCCACTTA+AGG 0.402090 5_1:-15691921 Msa0719980:intron
AACTGGTTATGCTTAAATAG+AGG 0.403160 5_1:+15692551 None:intergenic
CTGGATCAGCTTCACTTTGG+TGG 0.409775 5_1:+15693590 None:intergenic
AATACAATCTCATCTGCTTT+GGG 0.414398 5_1:+15696564 None:intergenic
ATTTAACTCAAAATTACAAA+TGG 0.415465 5_1:+15690336 None:intergenic
AGCAGAGGTCAAAATGCAAT+TGG 0.416702 5_1:-15690237 Msa0719980:three_prime_UTR
ATAAAGTACATATGTTAGAT+AGG 0.417117 5_1:-15692592 Msa0719980:CDS
TCCACATATTGCTGAGAACT+TGG 0.418931 5_1:-15693536 Msa0719980:intron
GGAAATTTCCATCGAGCCCT+TGG 0.422026 5_1:+15690572 None:intergenic
AAGCAACCTTTGCAAACAAC+TGG 0.424495 5_1:+15692534 None:intergenic
TAAGAATTGTACCTGAAAAT+CGG 0.431216 5_1:+15690899 None:intergenic
TGAATAATTTGATGATGAAA+AGG 0.432945 5_1:+15690276 None:intergenic
TTTGGTCTCTTATCAGTCAA+TGG 0.435531 5_1:+15690434 None:intergenic
AACTCACTTGAAATCAACTA+AGG 0.446753 5_1:+15696245 None:intergenic
AAAAGAATTATATCATATCA+TGG 0.448408 5_1:-15691801 Msa0719980:CDS
GGTCGATCCCTACCACCGCT+TGG 0.456868 5_1:+15692854 None:intergenic
CTATGCAAGCCCTTCAGTAT+TGG 0.458759 5_1:-15693387 Msa0719980:CDS
ATCGACCAGTTGCCAACTCT+GGG 0.459369 5_1:-15692838 Msa0719980:CDS
ATGTTTCAGGTTATTAAAAG+TGG 0.465113 5_1:-15696591 Msa0719980:intron
CAGTTGCCAACTCTGGGGTA+TGG 0.466803 5_1:-15692832 Msa0719980:CDS
AGCAGCAATGCAATAATAGC+TGG 0.469163 5_1:+15693571 None:intergenic
TGGTATGCTTCAAAGACAAA+AGG 0.469699 5_1:+15696324 None:intergenic
CAACTCTGGGGTATGGGCAC+CGG 0.473989 5_1:-15692825 Msa0719980:intron
TCGCAGCCATGGAAGTAGTT+CGG 0.476275 5_1:-15690950 Msa0719980:exon
AAGAAGAATATGAGGCTCTA+GGG 0.478399 5_1:+15698181 None:intergenic
GCGGTTGAAGGAGAAGAAAA+TGG 0.480178 5_1:+15698216 None:intergenic
GGTAATGGTACATATAATAA+GGG 0.480317 5_1:+15694246 None:intergenic
TTGAAAAGAAAATATTTGAC+AGG 0.480447 5_1:+15690551 None:intergenic
GACTAATCAATATGATGTGC+TGG 0.480585 5_1:-15691029 Msa0719980:CDS
GAAGAAGAATATGAGGCTCT+AGG 0.482679 5_1:+15698180 None:intergenic
TACACGAAGTCTGAAGGAAA+TGG 0.484728 5_1:-15693185 Msa0719980:CDS
GATCGACCAGTTGCCAACTC+TGG 0.486441 5_1:-15692839 Msa0719980:CDS
CCAAACATGTAGTAGTCAAA+AGG 0.489757 5_1:+15696285 None:intergenic
TGTTCTTTCTGGAATAAAGA+AGG 0.494479 5_1:-15697102 Msa0719980:CDS
GTACATATGTTAGATAGGAT+TGG 0.500169 5_1:-15692587 Msa0719980:CDS
ACCAGGTCATATCTATCCTA+TGG 0.501822 5_1:-15691960 Msa0719980:CDS
TTTGACCTCTGCTTATACTG+TGG 0.503827 5_1:+15690247 None:intergenic
AGTTGCCAACTCTGGGGTAT+GGG 0.506428 5_1:-15692831 Msa0719980:CDS
CAGTTTCCTTGTCGCAGCCA+TGG 0.507421 5_1:-15690961 Msa0719980:CDS
GTTCTACAGATTTATGTGGC+AGG 0.508344 5_1:-15693432 Msa0719980:intron
CCAACCTTAGAATTTGGTAA+TGG 0.514063 5_1:+15694231 None:intergenic
TTCTTGTGAAAATCCTGAAA+AGG 0.514517 5_1:-15691730 Msa0719980:intron
AAGGAACACCATACCTTAAG+TGG 0.516572 5_1:+15691908 None:intergenic
GATTGCCCCAAGCGGTGGTA+GGG 0.516655 5_1:-15692861 Msa0719980:CDS
GCAAGCCCTTCAGTATTGGC+AGG 0.519641 5_1:-15693383 Msa0719980:intron
ATCAGTCAATGGACTGGATG+TGG 0.519841 5_1:+15690445 None:intergenic
CATACCCCAGAGTTGGCAAC+TGG 0.523117 5_1:+15692833 None:intergenic
GTCCACTGAAGAAGAATCAA+AGG 0.524090 5_1:+15692015 None:intergenic
ACCAAGTTCTCAGCAATATG+TGG 0.525585 5_1:+15693535 None:intergenic
ATTATATCATATCATGGGAC+TGG 0.526296 5_1:-15691795 Msa0719980:CDS
ACCCTTTGATTCTTCTTCAG+TGG 0.526415 5_1:-15692017 Msa0719980:CDS
CTTGTTCATTTCTGGCATTG+AGG 0.527774 5_1:+15697947 None:intergenic
GCATAACCAGTTGTTTGCAA+AGG 0.529073 5_1:-15692540 Msa0719980:intron
TACTGCATCCAAGGGCTCGA+TGG 0.529105 5_1:-15690580 Msa0719980:three_prime_UTR
GGATTGCCCCAAGCGGTGGT+AGG 0.529108 5_1:-15692862 Msa0719980:CDS
TTATTAGTATAGAAAGCAAG+AGG 0.529389 5_1:+15698027 None:intergenic
TCCCACTATTGCTGAAGGGA+TGG 0.530075 5_1:-15697057 Msa0719980:CDS
TATCAGTAATCTGTTTCAGA+AGG 0.532309 5_1:-15690508 Msa0719980:three_prime_UTR
TAGCTGGATCAGCTTCACTT+TGG 0.539217 5_1:+15693587 None:intergenic
TTCACAAGAAGCAGTGGTGT+CGG 0.540293 5_1:+15691743 None:intergenic
AATAGTGGGAGGCAAAGTTC+CGG 0.541595 5_1:+15697070 None:intergenic
ACTGGTTATGCTTAAATAGA+GGG 0.544103 5_1:+15692552 None:intergenic
AGCAAATACACGAAGTCTGA+AGG 0.545413 5_1:-15693191 Msa0719980:CDS
TTGCCTCCCACTATTGCTGA+AGG 0.547179 5_1:-15697062 Msa0719980:CDS
CACCATACCTTAAGTGGAGG+AGG 0.547777 5_1:+15691914 None:intergenic
ACTGGATGTGGTAAGGAACT+AGG 0.548773 5_1:+15690457 None:intergenic
AATGGAAGAGCAGCTTAAGC+AGG 0.550921 5_1:-15694419 Msa0719980:intron
AATCTCTGATGTGAATCAGT+TGG 0.554900 5_1:+15690612 None:intergenic
GGCTGCGACAAGGAAACTGC+GGG 0.561455 5_1:+15690965 None:intergenic
TCATGGCACAATATTGCCAT+AGG 0.563505 5_1:+15691944 None:intergenic
AAAGAATTATATCATATCAT+GGG 0.565588 5_1:-15691800 Msa0719980:CDS
TCTCTTATCAGTCAATGGAC+TGG 0.565956 5_1:+15690439 None:intergenic
TCCATCCCTTCAGCAATAGT+GGG 0.571387 5_1:+15697056 None:intergenic
TCAATGGACTGGATGTGGTA+AGG 0.573722 5_1:+15690450 None:intergenic
ACTATCTTCGCTCTTTCTAG+GGG 0.574261 5_1:+15694290 None:intergenic
ATAAAGAAGGAAGTAGAAGC+CGG 0.579063 5_1:-15697089 Msa0719980:CDS
GTCGATCATTCAGGTCCACC+AGG 0.579509 5_1:-15691977 Msa0719980:CDS
AGAAGAATATGAGGCTCTAG+GGG 0.580479 5_1:+15698182 None:intergenic
TATCTTCGCTCTTTCTAGGG+GGG 0.582786 5_1:+15694292 None:intergenic
AATGAACCTGCCAATACTGA+AGG 0.584236 5_1:+15693377 None:intergenic
TCCACTGAAGAAGAATCAAA+GGG 0.586505 5_1:+15692016 None:intergenic
ATTTGGATTGCCCCAAGCGG+TGG 0.587858 5_1:-15692866 Msa0719980:CDS
CTCAATGCCAGAAATGAACA+AGG 0.592909 5_1:-15697946 Msa0719980:intron
ATGAACCTGCCAATACTGAA+GGG 0.595857 5_1:+15693378 None:intergenic
TCAAATCCGAACTACTTCCA+TGG 0.597509 5_1:+15690944 None:intergenic
ACTCACTTGAAATCAACTAA+GGG 0.600267 5_1:+15696246 None:intergenic
TGCCTCCCACTATTGCTGAA+GGG 0.600537 5_1:-15697061 Msa0719980:CDS
AATGGTACATATAATAAGGG+AGG 0.603023 5_1:+15694249 None:intergenic
CTACTTCCATGGCTGCGACA+AGG 0.604817 5_1:+15690955 None:intergenic
ATGATTTAGAATTCAAGACT+AGG 0.608001 5_1:+15698346 None:intergenic
CGGTGCCCATACCCCAGAGT+TGG 0.608757 5_1:+15692826 None:intergenic
TCGATCCCTACCACCGCTTG+GGG 0.610629 5_1:+15692856 None:intergenic
GTGGAGGAGGCATTATGTCA+TGG 0.612943 5_1:+15691927 None:intergenic
TTGTGCAGCACTTCTTACGT+TGG 0.613885 5_1:-15694463 Msa0719980:intron
ATTAGTCACAGAATCATACA+AGG 0.614049 5_1:+15691045 None:intergenic
ATACTGAAGGGCTTGCATAG+AGG 0.616766 5_1:+15693390 None:intergenic
GAAGGGCTTGCATAGAGGAT+CGG 0.619436 5_1:+15693395 None:intergenic
CTATCTTCGCTCTTTCTAGG+GGG 0.620555 5_1:+15694291 None:intergenic
TCTTCCATTTGAATGAAAAG+GGG 0.627956 5_1:+15694433 None:intergenic
GCCATAGGATAGATATGACC+TGG 0.629103 5_1:+15691959 None:intergenic
GTAGTTGCATTAGATCGAAG+AGG 0.630367 5_1:+15698111 None:intergenic
CTTCAGTGGACAATATGCGA+AGG 0.630655 5_1:-15692003 Msa0719980:CDS
TGGCTGCGACAAGGAAACTG+CGG 0.638817 5_1:+15690964 None:intergenic
CTTAAATAGAGGGTTAGACA+TGG 0.643216 5_1:+15692562 None:intergenic
GGATGTGGTAAGGAACTAGG+AGG 0.656917 5_1:+15690460 None:intergenic
GAAGAAGAAGAACTACGAAG+AGG 0.658333 5_1:+15698144 None:intergenic
ATCCCTTCAGCAATAGTGGG+AGG 0.659784 5_1:+15697059 None:intergenic
GAACACCATACCTTAAGTGG+AGG 0.667740 5_1:+15691911 None:intergenic
GTGCTGGAGTCTGCCATACA+CGG 0.674923 5_1:-15691013 Msa0719980:CDS
AATTGGATGATGATTCACAT+TGG 0.685531 5_1:-15690220 Msa0719980:three_prime_UTR
ATGCACATACCTTAAAAGCG+TGG 0.687163 5_1:+15693162 None:intergenic
ACGTGCCACAGTATAAGCAG+AGG 0.702190 5_1:-15690252 Msa0719980:three_prime_UTR
GATGTGGTAAGGAACTAGGA+GGG 0.704901 5_1:+15690461 None:intergenic
GAAGAATATGAGGCTCTAGG+GGG 0.707099 5_1:+15698183 None:intergenic
ATAGGATAGATATGACCTGG+TGG 0.707955 5_1:+15691962 None:intergenic
TCGACCAGTTGCCAACTCTG+GGG 0.718939 5_1:-15692837 Msa0719980:CDS
ATAATTTGGATTGCCCCAAG+CGG 0.725991 5_1:-15692869 Msa0719980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAAGTAAAATTGTTTT+CGG + chr5_1:15690997-15691016 None:intergenic 10.0%
!! ATGGAAAATAAAATAATAAA+TGG - chr5_1:15692976-15692995 Msa0719980:intron 10.0%
!! TGGAAAATAAAATAATAAAT+GGG - chr5_1:15692977-15692996 Msa0719980:intron 10.0%
!! TTTCAAAAAAAAAAAAAAAC+GGG + chr5_1:15693830-15693849 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGAAAGAA+AGG + chr5_1:15696104-15696123 None:intergenic 10.0%
!! ATTGTAAATTTGTAATATAA+TGG - chr5_1:15697243-15697262 Msa0719980:intron 10.0%
!! AAAATTGGTAAAATTATATT+TGG + chr5_1:15698130-15698149 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTGTATC+AGG - chr5_1:15698146-15698165 Msa0719980:CDS 10.0%
!!! TATTTGAGTTGTTTATTTAT+TGG - chr5_1:15690862-15690881 Msa0719980:intron 15.0%
!! AATTAAAAGGTTATAAACAT+AGG + chr5_1:15691568-15691587 None:intergenic 15.0%
!! AACAGTTAACTTTAATTAAA+AGG + chr5_1:15691581-15691600 None:intergenic 15.0%
!!! CAATGTAATTTTGATTTTAA+CGG - chr5_1:15692590-15692609 Msa0719980:CDS 15.0%
!! CATTCAATAAATATTGAATT+TGG + chr5_1:15693223-15693242 None:intergenic 15.0%
!! TTCAAAAAAAAAAAAAAACG+GGG + chr5_1:15693829-15693848 None:intergenic 15.0%
!! TTTATGAATATGTTAACATA+GGG + chr5_1:15694867-15694886 None:intergenic 15.0%
!! ATTTATGAATATGTTAACAT+AGG + chr5_1:15694868-15694887 None:intergenic 15.0%
!!! TTTTAATTTGATATTTATGC+TGG - chr5_1:15695202-15695221 Msa0719980:intron 15.0%
!! AAGCATATACAAAATAATAA+AGG + chr5_1:15695923-15695942 None:intergenic 15.0%
!! AAACCAACTAAATTAAAAAA+TGG + chr5_1:15696251-15696270 None:intergenic 15.0%
!! AATAAGAGAAAAATATATCA+GGG + chr5_1:15696675-15696694 None:intergenic 15.0%
!! AAATAAGAGAAAAATATATC+AGG + chr5_1:15696676-15696695 None:intergenic 15.0%
!! AAAAGAATTATATCATATCA+TGG - chr5_1:15696742-15696761 Msa0719980:intron 15.0%
!! AAAGAATTATATCATATCAT+GGG - chr5_1:15696743-15696762 Msa0719980:intron 15.0%
!!! GACTTTTTTAATTTGATTAT+TGG - chr5_1:15697430-15697449 Msa0719980:intron 15.0%
!! ATTTAACTCAAAATTACAAA+TGG + chr5_1:15698210-15698229 None:intergenic 15.0%
!! ATATTAGCAGAAATTTCTTT+AGG + chr5_1:15690549-15690568 None:intergenic 20.0%
!! TAAAGAAATTTCTGCTAATA+TGG - chr5_1:15690548-15690567 Msa0719980:three_prime_UTR 20.0%
!! TGATTATACTCTTTCTTTAA+AGG + chr5_1:15690840-15690859 None:intergenic 20.0%
!! TTTATTTATTGGCATAAGTT+TGG - chr5_1:15690873-15690892 Msa0719980:intron 20.0%
!!! ATTTTTTCTTTTGTGTTTGT+AGG - chr5_1:15691177-15691196 Msa0719980:intron 20.0%
!! TGACTATTGTTAACTAAAAT+TGG - chr5_1:15691310-15691329 Msa0719980:intron 20.0%
!! GACTATTGTTAACTAAAATT+GGG - chr5_1:15691311-15691330 Msa0719980:intron 20.0%
!!! TTTATTAGATCGCATATTTT+TGG - chr5_1:15692017-15692036 Msa0719980:CDS 20.0%
!!! TTATTTTATTTTCCATCTGT+GGG + chr5_1:15692972-15692991 None:intergenic 20.0%
!!! ATTATTTTATTTTCCATCTG+TGG + chr5_1:15692973-15692992 None:intergenic 20.0%
!! AACAGATAAATTCATAACTA+GGG + chr5_1:15693779-15693798 None:intergenic 20.0%
!! TCAAAAAAAAAAAAAAACGG+GGG + chr5_1:15693828-15693847 None:intergenic 20.0%
!! ACATGCTTAATTTAAAGATT+TGG - chr5_1:15693919-15693938 Msa0719980:intron 20.0%
!! TACATTTAAGAATAGATATG+AGG + chr5_1:15694053-15694072 None:intergenic 20.0%
!! GCATATTAAAATAAATAGCA+AGG + chr5_1:15694445-15694464 None:intergenic 20.0%
!!! GATTGTTTTCAATATTTCAT+TGG - chr5_1:15694553-15694572 Msa0719980:intron 20.0%
!! TGTTAACATATTCATAAATG+TGG - chr5_1:15694869-15694888 Msa0719980:intron 20.0%
!! GTTAACATATTCATAAATGT+GGG - chr5_1:15694870-15694889 Msa0719980:intron 20.0%
!! TTAACATATTCATAAATGTG+GGG - chr5_1:15694871-15694890 Msa0719980:intron 20.0%
!!! ATTACGTTTTTCATTTATGT+AGG - chr5_1:15695261-15695280 Msa0719980:intron 20.0%
!! TTGAATCCAAATCTTAAAAA+AGG - chr5_1:15695507-15695526 Msa0719980:intron 20.0%
!! TGAATCCAAATCTTAAAAAA+GGG - chr5_1:15695508-15695527 Msa0719980:intron 20.0%
!!! AATGTACTTTTTTTTGTTAC+AGG - chr5_1:15695639-15695658 Msa0719980:intron 20.0%
!! GAAACAAAATATCATTAACT+GGG - chr5_1:15695842-15695861 Msa0719980:intron 20.0%
!! ATAAAGTACATATGTTAGAT+AGG - chr5_1:15695951-15695970 Msa0719980:intron 20.0%
!!! TATGTTGGTTTTATAACAAA+CGG + chr5_1:15696080-15696099 None:intergenic 20.0%
!!! AGGTAATAAAAGTATATACT+CGG + chr5_1:15696285-15696304 None:intergenic 20.0%
!! AAAACACTATTAAATACAGA+CGG - chr5_1:15697006-15697025 Msa0719980:intron 20.0%
!! TAAATTCCATATAAGCTATT+AGG - chr5_1:15697063-15697082 Msa0719980:CDS 20.0%
!! TAAATGTTAATACTCAGTTT+CGG + chr5_1:15697187-15697206 None:intergenic 20.0%
!!! TTAATTTGATTATTGGAACA+TGG - chr5_1:15697437-15697456 Msa0719980:intron 20.0%
!! TAATTTGATTATTGGAACAT+GGG - chr5_1:15697438-15697457 Msa0719980:intron 20.0%
!! AACAAATCTTGATTATTAGA+TGG - chr5_1:15697750-15697769 Msa0719980:intron 20.0%
!! ACAAATCTTGATTATTAGAT+GGG - chr5_1:15697751-15697770 Msa0719980:intron 20.0%
!! AAAATGCTAAAATTGAAGAT+TGG + chr5_1:15697820-15697839 None:intergenic 20.0%
!!! TTCAATTTTAGCATTTTCTA+CGG - chr5_1:15697823-15697842 Msa0719980:intron 20.0%
!! TTGAAAAGAAAATATTTGAC+AGG + chr5_1:15697995-15698014 None:intergenic 20.0%
!!! TGAATAATTTGATGATGAAA+AGG + chr5_1:15698270-15698289 None:intergenic 20.0%
!! ATGATTTAGAATTCAAGACT+AGG + chr5_1:15690200-15690219 None:intergenic 25.0%
!! AAGATTTCTTCTTTTTGTGA+CGG + chr5_1:15690290-15690309 None:intergenic 25.0%
! TTATTAGTATAGAAAGCAAG+AGG + chr5_1:15690519-15690538 None:intergenic 25.0%
! ATAAGTTGTTTATCCAAACA+TGG - chr5_1:15691075-15691094 Msa0719980:intron 25.0%
! ATCAAACCACAAACTAAAAA+TGG + chr5_1:15691346-15691365 None:intergenic 25.0%
!! TTACTGCACTTTTATAGTTA+AGG + chr5_1:15691522-15691541 None:intergenic 25.0%
!!! AAACAATTTCTAGTATCTTG+TGG - chr5_1:15691622-15691641 Msa0719980:intron 25.0%
!!! AACAATTTCTAGTATCTTGT+GGG - chr5_1:15691623-15691642 Msa0719980:intron 25.0%
!!! CAGTTAAAGAAAGCTATTTT+TGG + chr5_1:15691691-15691710 None:intergenic 25.0%
! TGATATAGTTCGTTAATTTC+CGG - chr5_1:15691742-15691761 Msa0719980:CDS 25.0%
! CTTTATGATGATAAAAACAG+TGG - chr5_1:15691793-15691812 Msa0719980:CDS 25.0%
!! ACTTTTAATAACCTGAAACA+TGG + chr5_1:15691953-15691972 None:intergenic 25.0%
!!! ATGTTTCAGGTTATTAAAAG+TGG - chr5_1:15691952-15691971 Msa0719980:CDS 25.0%
!!! AAATCAGACTGATTTTTAAC+AGG - chr5_1:15692194-15692213 Msa0719980:intron 25.0%
! TTGAATTGCTTAATAAACTC+TGG + chr5_1:15692705-15692724 None:intergenic 25.0%
! AAAAAAAAGGAAGAAAGAAG+TGG - chr5_1:15693076-15693095 Msa0719980:intron 25.0%
! TTATCGTCATTTATATCCTA+TGG + chr5_1:15693599-15693618 None:intergenic 25.0%
!! AATGAGATCATAGATTTTGT+CGG + chr5_1:15693624-15693643 None:intergenic 25.0%
! CAACAGATAAATTCATAACT+AGG + chr5_1:15693780-15693799 None:intergenic 25.0%
! CAAAAAAAAAAAAAAACGGG+GGG + chr5_1:15693827-15693846 None:intergenic 25.0%
! AAAAATAACTTGATCCTTCT+TGG - chr5_1:15693847-15693866 Msa0719980:intron 25.0%
!! GGTAATGGTACATATAATAA+GGG + chr5_1:15694300-15694319 None:intergenic 25.0%
!!! TGGTAATGGTACATATAATA+AGG + chr5_1:15694301-15694320 None:intergenic 25.0%
!! AAATGTTGACATAATTTGCA+TGG + chr5_1:15694470-15694489 None:intergenic 25.0%
! TGATAACTGTAGTACTTAAT+GGG + chr5_1:15694752-15694771 None:intergenic 25.0%
! AAGATTGAAAAAATTACTGC+AGG - chr5_1:15694905-15694924 Msa0719980:intron 25.0%
! AGATTGAAAAAATTACTGCA+GGG - chr5_1:15694906-15694925 Msa0719980:intron 25.0%
! ACATAAATCTGTAGAACAAA+AGG + chr5_1:15695108-15695127 None:intergenic 25.0%
!! TTTTGTTCTACAGATTTATG+TGG - chr5_1:15695107-15695126 Msa0719980:intron 25.0%
! CTTCAAATTTGTAGAAAACA+TGG + chr5_1:15695477-15695496 None:intergenic 25.0%
! ACATCGACATATCAATATAA+GGG + chr5_1:15695611-15695630 None:intergenic 25.0%
! AACATCGACATATCAATATA+AGG + chr5_1:15695612-15695631 None:intergenic 25.0%
! TCGATCATATGATTCATATT+CGG - chr5_1:15695820-15695839 Msa0719980:intron 25.0%
! GGAAACAAAATATCATTAAC+TGG - chr5_1:15695841-15695860 Msa0719980:intron 25.0%
!!! ATGTTGGTTTTATAACAAAC+GGG + chr5_1:15696079-15696098 None:intergenic 25.0%
!!! GCACCATTTTTTAATTTAGT+TGG - chr5_1:15696245-15696264 Msa0719980:intron 25.0%
! TTCATGATAAGCAAATCATA+AGG + chr5_1:15696305-15696324 None:intergenic 25.0%
! AGACTTATGCATATTTCATA+TGG - chr5_1:15696400-15696419 Msa0719980:intron 25.0%
! ATAATAAATGTAGAGATCTG+AGG + chr5_1:15696871-15696890 None:intergenic 25.0%
! AATAGTCCTAATAGCTTATA+TGG + chr5_1:15697072-15697091 None:intergenic 25.0%
! ATAAGCTATTAGGACTATTA+AGG - chr5_1:15697073-15697092 Msa0719980:CDS 25.0%
! TATCCAAATTTCTCATTCAA+AGG + chr5_1:15697118-15697137 None:intergenic 25.0%
! TAACATTTACAAACATTTGC+TGG - chr5_1:15697198-15697217 Msa0719980:intron 25.0%
! CAAAGAATCTATGTATCTAA+CGG + chr5_1:15697411-15697430 None:intergenic 25.0%
! TAAGAATTGTACCTGAAAAT+CGG + chr5_1:15697647-15697666 None:intergenic 25.0%
!! GTTATTTGCTTGAATTTTCA+TGG - chr5_1:15697845-15697864 Msa0719980:intron 25.0%
AGAAGAAGAAGAAGAATATG+AGG + chr5_1:15690373-15690392 None:intergenic 30.0%
AAAGATACCTTGTTCATTTC+TGG + chr5_1:15690607-15690626 None:intergenic 30.0%
ATAAGTTTGGTTAGACTGTT+TGG - chr5_1:15690886-15690905 Msa0719980:intron 30.0%
TAAGTTTGGTTAGACTGTTT+GGG - chr5_1:15690887-15690906 Msa0719980:intron 30.0%
ACAAACTAAAAATGGCTTCT+TGG + chr5_1:15691338-15691357 None:intergenic 30.0%
!!! AAGAAGCCATTTTTAGTTTG+TGG - chr5_1:15691337-15691356 Msa0719980:intron 30.0%
!! TGTTCTTTCTGGAATAAAGA+AGG - chr5_1:15691441-15691460 Msa0719980:intron 30.0%
GATATAGTTCGTTAATTTCC+GGG - chr5_1:15691743-15691762 Msa0719980:CDS 30.0%
AATACAATCTCATCTGCTTT+GGG + chr5_1:15691982-15692001 None:intergenic 30.0%
!!! ATCAGTCTGATTTTTTAGCA+TGG + chr5_1:15692187-15692206 None:intergenic 30.0%
! CTAAGGGACGAATATAATTT+TGG + chr5_1:15692284-15692303 None:intergenic 30.0%
ACTCACTTGAAATCAACTAA+GGG + chr5_1:15692300-15692319 None:intergenic 30.0%
AACTCACTTGAAATCAACTA+AGG + chr5_1:15692301-15692320 None:intergenic 30.0%
! GATTAGTCAAATTTCATGCA+TGG - chr5_1:15692409-15692428 Msa0719980:intron 30.0%
CAATAAGCTAAGATTGTGAT+GGG - chr5_1:15692465-15692484 Msa0719980:intron 30.0%
AAGTATAAGATATGCATGCT+TGG - chr5_1:15692488-15692507 Msa0719980:intron 30.0%
AGTATAAGATATGCATGCTT+GGG - chr5_1:15692489-15692508 Msa0719980:intron 30.0%
GCTTAACATGATAATCCTAT+GGG + chr5_1:15692532-15692551 None:intergenic 30.0%
TGCTTAACATGATAATCCTA+TGG + chr5_1:15692533-15692552 None:intergenic 30.0%
ATTGCTTAATAAACTCTGGA+AGG + chr5_1:15692701-15692720 None:intergenic 30.0%
ATTAAGCAATTCAATCGTTC+TGG - chr5_1:15692711-15692730 Msa0719980:intron 30.0%
ATACATTAGTGTATGACACA+TGG - chr5_1:15692872-15692891 Msa0719980:CDS 30.0%
!!! ATAGTAGATTTTGGTGTTCA+AGG - chr5_1:15692895-15692914 Msa0719980:intron 30.0%
!!! TAGTAGATTTTGGTGTTCAA+GGG - chr5_1:15692896-15692915 Msa0719980:intron 30.0%
GGATATTGTAGAAGCAATTA+TGG - chr5_1:15692917-15692936 Msa0719980:intron 30.0%
GAACTACAAAATTGTATTGG+AGG - chr5_1:15693178-15693197 Msa0719980:CDS 30.0%
TACAAAATTGTATTGGAGGA+GGG - chr5_1:15693182-15693201 Msa0719980:CDS 30.0%
!!! TTAGGCTTTGTTTAGGATTT+TGG + chr5_1:15693374-15693393 None:intergenic 30.0%
!!! AGATTTTGACTACATCTTAC+AGG - chr5_1:15693660-15693679 Msa0719980:intron 30.0%
!!! GATTTTGACTACATCTTACA+GGG - chr5_1:15693661-15693680 Msa0719980:intron 30.0%
TTCTATACATACAACCAAGA+AGG + chr5_1:15693864-15693883 None:intergenic 30.0%
TCTTCCATTTGAATGAAAAG+GGG + chr5_1:15694113-15694132 None:intergenic 30.0%
CTCTTCCATTTGAATGAAAA+GGG + chr5_1:15694114-15694133 None:intergenic 30.0%
AGCAAGCATTTGAATGAAAA+GGG + chr5_1:15694177-15694196 None:intergenic 30.0%
AAGCAAGCATTTGAATGAAA+AGG + chr5_1:15694178-15694197 None:intergenic 30.0%
AATGGTACATATAATAAGGG+AGG + chr5_1:15694297-15694316 None:intergenic 30.0%
TGTACCATTACCAAATTCTA+AGG - chr5_1:15694308-15694327 Msa0719980:intron 30.0%
ATGCATAAGCTTGACATATA+TGG - chr5_1:15694349-15694368 Msa0719980:intron 30.0%
!! TGTAAAAGTTAGTCTTCTTC+AGG - chr5_1:15694397-15694416 Msa0719980:intron 30.0%
TCAATCATAAATCTAGACTG+TGG - chr5_1:15694504-15694523 Msa0719980:intron 30.0%
TTGAAAACAATCAAACGAGA+CGG + chr5_1:15694545-15694564 None:intergenic 30.0%
AAACCAAATTTACCAGTGTA+AGG - chr5_1:15694647-15694666 Msa0719980:intron 30.0%
GATAACTGTAGTACTTAATG+GGG + chr5_1:15694751-15694770 None:intergenic 30.0%
GTGATAACTGTAGTACTTAA+TGG + chr5_1:15694753-15694772 None:intergenic 30.0%
ATACACAAGAACCCATAAAT+CGG + chr5_1:15694839-15694858 None:intergenic 30.0%
!!! CTCTTCCCTTTTTTAAGATT+TGG + chr5_1:15695516-15695535 None:intergenic 30.0%
CACACAAGATACTATACAAA+GGG + chr5_1:15695563-15695582 None:intergenic 30.0%
ACACACAAGATACTATACAA+AGG + chr5_1:15695564-15695583 None:intergenic 30.0%
TGTGTGTAATAGTTGTTGAT+TGG - chr5_1:15695577-15695596 Msa0719980:intron 30.0%
!!! ACTTTTTTTTGTTACAGGAG+TGG - chr5_1:15695644-15695663 Msa0719980:intron 30.0%
TTACAAGAAAGTGAACTTAC+CGG + chr5_1:15695740-15695759 None:intergenic 30.0%
GTACATATGTTAGATAGGAT+TGG - chr5_1:15695956-15695975 Msa0719980:intron 30.0%
ACTGGTTATGCTTAAATAGA+GGG + chr5_1:15695994-15696013 None:intergenic 30.0%
AACTGGTTATGCTTAAATAG+AGG + chr5_1:15695995-15696014 None:intergenic 30.0%
!! TGACCTTTTTCACTGAAAAT+AGG - chr5_1:15696034-15696053 Msa0719980:intron 30.0%
!! TTTTGAAAGAAAGGCTATGT+TGG + chr5_1:15696095-15696114 None:intergenic 30.0%
AGTACATGGATAATTCATCA+CGG - chr5_1:15696156-15696175 Msa0719980:intron 30.0%
!! TGATTTGCTTATCATGAAAG+CGG - chr5_1:15696307-15696326 Msa0719980:CDS 30.0%
ATGGAAATTCATAATCAGCA+TGG + chr5_1:15696485-15696504 None:intergenic 30.0%
TTTCAACCTGCAAAATTACA+CGG + chr5_1:15696708-15696727 None:intergenic 30.0%
! TTGCAGGTTGAAAAAGAAAT+TGG - chr5_1:15696715-15696734 Msa0719980:intron 30.0%
! TGCAGGTTGAAAAAGAAATT+GGG - chr5_1:15696716-15696735 Msa0719980:intron 30.0%
ATTATATCATATCATGGGAC+TGG - chr5_1:15696748-15696767 Msa0719980:intron 30.0%
TTCTTGTGAAAATCCTGAAA+AGG - chr5_1:15696813-15696832 Msa0719980:intron 30.0%
TATCCTTGTAGTAAGAAGTA+TGG - chr5_1:15696947-15696966 Msa0719980:intron 30.0%
!!! TTTGGTACTGTTCTTTTTTG+TGG + chr5_1:15697143-15697162 None:intergenic 30.0%
ACATAGATCATTAACTACAG+AGG + chr5_1:15697274-15697293 None:intergenic 30.0%
!!! TTTTAAGTTCAGAACGATGA+GGG + chr5_1:15697354-15697373 None:intergenic 30.0%
!!! TTTTTAAGTTCAGAACGATG+AGG + chr5_1:15697355-15697374 None:intergenic 30.0%
AACGGATAATAAATCATGTG+TGG + chr5_1:15697393-15697412 None:intergenic 30.0%
ATTAGTCACAGAATCATACA+AGG + chr5_1:15697501-15697520 None:intergenic 30.0%
TTCAGGTACAATTCTTACTT+TGG - chr5_1:15697650-15697669 Msa0719980:intron 30.0%
TTGAAAACGTTTCTCATTGA+TGG - chr5_1:15697723-15697742 Msa0719980:intron 30.0%
! TTTTGTAGATGCAAGTTACA+AGG - chr5_1:15697893-15697912 Msa0719980:intron 30.0%
CTGAAACAGATTACTGATAA+TGG + chr5_1:15698034-15698053 None:intergenic 30.0%
TATCAGTAATCTGTTTCAGA+AGG - chr5_1:15698035-15698054 Msa0719980:CDS 30.0%
AATTGGATGATGATTCACAT+TGG - chr5_1:15698323-15698342 Msa0719980:five_prime_UTR 30.0%
AAGAAGAATATGAGGCTCTA+GGG + chr5_1:15690365-15690384 None:intergenic 35.0%
AGATCGAAGAGGAAAAAAAG+TGG + chr5_1:15690424-15690443 None:intergenic 35.0%
TCTTCTTCTGTAACAACTTC+TGG - chr5_1:15690465-15690484 Msa0719980:three_prime_UTR 35.0%
AGCAAGAGGAGAAAAATAAG+AGG + chr5_1:15690505-15690524 None:intergenic 35.0%
!!! GTTGCTGCTTTTTCTTTTTG+TGG - chr5_1:15691285-15691304 Msa0719980:intron 35.0%
TTGTTTGCAGATGTTCTTTC+TGG - chr5_1:15691430-15691449 Msa0719980:intron 35.0%
ATAAAGAAGGAAGTAGAAGC+CGG - chr5_1:15691454-15691473 Msa0719980:intron 35.0%
AGTTTACTCATGATTCACTG+TGG - chr5_1:15691656-15691675 Msa0719980:intron 35.0%
GAAACATGGTTGCAAACAAA+AGG + chr5_1:15691939-15691958 None:intergenic 35.0%
TTTGTTTGCAACCATGTTTC+AGG - chr5_1:15691939-15691958 Msa0719980:CDS 35.0%
CAATACAATCTCATCTGCTT+TGG + chr5_1:15691983-15692002 None:intergenic 35.0%
!!! TCGCATATTTTTGGATGTGA+AGG - chr5_1:15692026-15692045 Msa0719980:intron 35.0%
AATCAAAGAGTCTGTATGCA+AGG + chr5_1:15692094-15692113 None:intergenic 35.0%
TGGTATGCTTCAAAGACAAA+AGG + chr5_1:15692222-15692241 None:intergenic 35.0%
CCAAACATGTAGTAGTCAAA+AGG + chr5_1:15692261-15692280 None:intergenic 35.0%
!! CCTTTTGACTACTACATGTT+TGG - chr5_1:15692258-15692277 Msa0719980:intron 35.0%
CAATGCAAAAGAGAAGAAAG+AGG + chr5_1:15692340-15692359 None:intergenic 35.0%
GCAATAAGCTAAGATTGTGA+TGG - chr5_1:15692464-15692483 Msa0719980:intron 35.0%
! CATGATAATCCTATGGGTTA+TGG + chr5_1:15692526-15692545 None:intergenic 35.0%
GATTATCATGTTAAGCACGT+TGG - chr5_1:15692536-15692555 Msa0719980:intron 35.0%
GGTTGAAGCTAATGGTTTAT+CGG - chr5_1:15692557-15692576 Msa0719980:CDS 35.0%
GTTGAAGCTAATGGTTTATC+GGG - chr5_1:15692558-15692577 Msa0719980:CDS 35.0%
ACAACTCACATTTACGCTTA+AGG - chr5_1:15692795-15692814 Msa0719980:intron 35.0%
! GACACATGGATAGTAGATTT+TGG - chr5_1:15692886-15692905 Msa0719980:intron 35.0%
GAAGAAAGAAGTGGAAAGAA+TGG - chr5_1:15693085-15693104 Msa0719980:intron 35.0%
AATACGAAATCCCCCTAATT+TGG - chr5_1:15693153-15693172 Msa0719980:intron 35.0%
ATACGAAATCCCCCTAATTT+GGG - chr5_1:15693154-15693173 Msa0719980:intron 35.0%
TTTGTAGTTCCCCCAAATTA+GGG + chr5_1:15693168-15693187 None:intergenic 35.0%
! TTTTGTAGTTCCCCCAAATT+AGG + chr5_1:15693169-15693188 None:intergenic 35.0%
GGGGAACTACAAAATTGTAT+TGG - chr5_1:15693175-15693194 Msa0719980:CDS 35.0%
CTACAAAATTGTATTGGAGG+AGG - chr5_1:15693181-15693200 Msa0719980:CDS 35.0%
!! CTTTGTTTAGGATTTTGGAG+GGG + chr5_1:15693369-15693388 None:intergenic 35.0%
!!! GCTTTGTTTAGGATTTTGGA+GGG + chr5_1:15693370-15693389 None:intergenic 35.0%
TAAACAAAGCCTAAGACTCT+CGG - chr5_1:15693380-15693399 Msa0719980:intron 35.0%
AAAGAAAATCCGAGAGTCTT+AGG + chr5_1:15693392-15693411 None:intergenic 35.0%
AGTTTGACAAAACAGGAGTA+TGG + chr5_1:15693422-15693441 None:intergenic 35.0%
ATGAATAAACACGTGGTCAT+AGG + chr5_1:15693497-15693516 None:intergenic 35.0%
TATTCATTAGACCCTGCAAT+AGG - chr5_1:15693510-15693529 Msa0719980:intron 35.0%
ATTCATTAGACCCTGCAATA+GGG - chr5_1:15693511-15693530 Msa0719980:intron 35.0%
GATGTAGTCAAAATCTGCAA+AGG + chr5_1:15693656-15693675 None:intergenic 35.0%
CATAAGAGATCTCCATTTGA+GGG + chr5_1:15693710-15693729 None:intergenic 35.0%
TCATAAGAGATCTCCATTTG+AGG + chr5_1:15693711-15693730 None:intergenic 35.0%
AAAAAAAAAAAACGGGGGGA+GGG + chr5_1:15693823-15693842 None:intergenic 35.0%
AAAAAAAAAAAAACGGGGGG+AGG + chr5_1:15693824-15693843 None:intergenic 35.0%
! AAAGCCTACTTCTAAAGGTA+TGG + chr5_1:15693947-15693966 None:intergenic 35.0%
GCTCTTCCATTTGAATGAAA+AGG + chr5_1:15694115-15694134 None:intergenic 35.0%
ATGTTGCCAACGTTAGAAAT+TGG + chr5_1:15694152-15694171 None:intergenic 35.0%
GCAAGCATTTGAATGAAAAG+GGG + chr5_1:15694176-15694195 None:intergenic 35.0%
!! AATGCTTGCTTTTACGTTGT+AGG - chr5_1:15694187-15694206 Msa0719980:intron 35.0%
TACTATCTTCGCTCTTTCTA+GGG + chr5_1:15694257-15694276 None:intergenic 35.0%
TTACTATCTTCGCTCTTTCT+AGG + chr5_1:15694258-15694277 None:intergenic 35.0%
CCAACCTTAGAATTTGGTAA+TGG + chr5_1:15694315-15694334 None:intergenic 35.0%
!! CCATTACCAAATTCTAAGGT+TGG - chr5_1:15694312-15694331 Msa0719980:intron 35.0%
CAGATACCAACCTTAGAATT+TGG + chr5_1:15694321-15694340 None:intergenic 35.0%
!! AAAAGTTAGTCTTCTTCAGG+TGG - chr5_1:15694400-15694419 Msa0719980:intron 35.0%
TGAAAACAATCAAACGAGAC+GGG + chr5_1:15694544-15694563 None:intergenic 35.0%
GTCTTCAGATCAGTTTCATT+AGG - chr5_1:15694575-15694594 Msa0719980:intron 35.0%
CGCAGAATTGCAATTAAGTT+CGG + chr5_1:15694611-15694630 None:intergenic 35.0%
GAACCTTACACTGGTAAATT+TGG + chr5_1:15694653-15694672 None:intergenic 35.0%
AATTCCAGGCAAATTTGTGA+CGG + chr5_1:15694679-15694698 None:intergenic 35.0%
!! ATCTAGCATTGACAAATTCC+AGG + chr5_1:15694693-15694712 None:intergenic 35.0%
CAAGGTTGACATTTCATGAA+AGG + chr5_1:15694813-15694832 None:intergenic 35.0%
TCAACCTTGATTCCGATTTA+TGG - chr5_1:15694824-15694843 Msa0719980:intron 35.0%
CAACCTTGATTCCGATTTAT+GGG - chr5_1:15694825-15694844 Msa0719980:intron 35.0%
GATTCAAAGTCAACCTCATT+AGG + chr5_1:15695235-15695254 None:intergenic 35.0%
CGATGCATTGAAGTCTTAAT+TGG + chr5_1:15695446-15695465 None:intergenic 35.0%
GGAGTGGATCACAAATAATT+TGG - chr5_1:15695660-15695679 Msa0719980:intron 35.0%
! CATATGATCGATCTAAGATG+TGG + chr5_1:15695811-15695830 None:intergenic 35.0%
CTTAAATAGAGGGTTAGACA+TGG + chr5_1:15695984-15696003 None:intergenic 35.0%
! CCACCTATTTTCAGTGAAAA+AGG + chr5_1:15696040-15696059 None:intergenic 35.0%
!! CCTTTTTCACTGAAAATAGG+TGG - chr5_1:15696037-15696056 Msa0719980:intron 35.0%
TCTACTGTATGTATGAGACA+AGG + chr5_1:15696132-15696151 None:intergenic 35.0%
ATACAGTAGAGTCAAGTACA+TGG - chr5_1:15696142-15696161 Msa0719980:intron 35.0%
ATGGATAATTCATCACGGAT+GGG - chr5_1:15696161-15696180 Msa0719980:intron 35.0%
GCATGGAAATATCACAGAAT+TGG + chr5_1:15696468-15696487 None:intergenic 35.0%
TGAATTTCCATGCTTATACG+AGG - chr5_1:15696494-15696513 Msa0719980:intron 35.0%
TCCACTGAAGAAGAATCAAA+GGG + chr5_1:15696530-15696549 None:intergenic 35.0%
! GCAGGTTGAAAAAGAAATTG+GGG - chr5_1:15696717-15696736 Msa0719980:intron 35.0%
GTGAAAATCCTGAAAAGGTA+AGG - chr5_1:15696818-15696837 Msa0719980:intron 35.0%
! CATATTCTCCTTACCTTTTC+AGG + chr5_1:15696829-15696848 None:intergenic 35.0%
TAAGTCACCTATTGTCATTC+TGG - chr5_1:15696924-15696943 Msa0719980:intron 35.0%
AAGGATACCAGAATGACAAT+AGG + chr5_1:15696934-15696953 None:intergenic 35.0%
AGCTATTAGGACTATTAAGG+AGG - chr5_1:15697076-15697095 Msa0719980:CDS 35.0%
GCTATTAGGACTATTAAGGA+GGG - chr5_1:15697077-15697096 Msa0719980:CDS 35.0%
GTGCCTTTGAATGAGAAATT+TGG - chr5_1:15697112-15697131 Msa0719980:intron 35.0%
TAATACTCAGTTTCGGTAGA+GGG + chr5_1:15697180-15697199 None:intergenic 35.0%
TTAATACTCAGTTTCGGTAG+AGG + chr5_1:15697181-15697200 None:intergenic 35.0%
AGATCATTAACTACAGAGGT+GGG + chr5_1:15697270-15697289 None:intergenic 35.0%
TAGATCATTAACTACAGAGG+TGG + chr5_1:15697271-15697290 None:intergenic 35.0%
GACTAATCAATATGATGTGC+TGG - chr5_1:15697514-15697533 Msa0719980:intron 35.0%
!!! TACACTTTTCACCGATTTTC+AGG - chr5_1:15697633-15697652 Msa0719980:intron 35.0%
AATCTCTGATGTGAATCAGT+TGG + chr5_1:15697934-15697953 None:intergenic 35.0%
TTTGGTCTCTTATCAGTCAA+TGG + chr5_1:15698112-15698131 None:intergenic 35.0%
! AGAAGAATATGAGGCTCTAG+GGG + chr5_1:15690364-15690383 None:intergenic 40.0%
GAAGAAGAATATGAGGCTCT+AGG + chr5_1:15690366-15690385 None:intergenic 40.0%
GAAGAAGAAGAACTACGAAG+AGG + chr5_1:15690402-15690421 None:intergenic 40.0%
GTAGTTGCATTAGATCGAAG+AGG + chr5_1:15690435-15690454 None:intergenic 40.0%
!! CTTGTTCATTTCTGGCATTG+AGG + chr5_1:15690599-15690618 None:intergenic 40.0%
CTCAATGCCAGAAATGAACA+AGG - chr5_1:15690597-15690616 Msa0719980:three_prime_UTR 40.0%
ATATGTGTGATGTCGCTGTT+TGG - chr5_1:15691104-15691123 Msa0719980:intron 40.0%
AAGGCTCTCTCTTTGCTTTA+TGG + chr5_1:15692242-15692261 None:intergenic 40.0%
! ATCCTATGGGTTATGGAGAA+TGG + chr5_1:15692519-15692538 None:intergenic 40.0%
! ACAGGATACAGCATTTTCAC+AGG + chr5_1:15692659-15692678 None:intergenic 40.0%
CTGTATCCTGTATGAATCCT+GGG - chr5_1:15692668-15692687 Msa0719980:intron 40.0%
AGATTCAATCTGATGCACTG+TGG + chr5_1:15692771-15692790 None:intergenic 40.0%
ACTCACATTTACGCTTAAGG+AGG - chr5_1:15692798-15692817 Msa0719980:intron 40.0%
AAGGGAGGGCTTGAAAAAAA+AGG - chr5_1:15693063-15693082 Msa0719980:intron 40.0%
! AAAGAATGGAGAGCTTTGTG+AGG - chr5_1:15693099-15693118 Msa0719980:intron 40.0%
! AAGAATGGAGAGCTTTGTGA+GGG - chr5_1:15693100-15693119 Msa0719980:intron 40.0%
TACGAAATCCCCCTAATTTG+GGG - chr5_1:15693155-15693174 Msa0719980:intron 40.0%
TTGTAGTTCCCCCAAATTAG+GGG + chr5_1:15693167-15693186 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG - chr5_1:15693188-15693207 Msa0719980:CDS 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG - chr5_1:15693189-15693208 Msa0719980:CDS 40.0%
TTTCGAGGGATGAGATTAGA+GGG + chr5_1:15693341-15693360 None:intergenic 40.0%
!!! GGCTTTGTTTAGGATTTTGG+AGG + chr5_1:15693371-15693390 None:intergenic 40.0%
!! GAGAGTCTTAGGCTTTGTTT+AGG + chr5_1:15693381-15693400 None:intergenic 40.0%
TGTAGGGAGTTTGACAAAAC+AGG + chr5_1:15693429-15693448 None:intergenic 40.0%
AAGGCTGGCAATATGATGTA+GGG + chr5_1:15693445-15693464 None:intergenic 40.0%
TCATAGGACAATGGAGAAGA+GGG + chr5_1:15693481-15693500 None:intergenic 40.0%
GGGTCTAATGAATAAACACG+TGG + chr5_1:15693504-15693523 None:intergenic 40.0%
TTCATTAGACCCTGCAATAG+GGG - chr5_1:15693512-15693531 Msa0719980:intron 40.0%
GCTTAGTTGAAAGTTGCTCA+TGG - chr5_1:15693569-15693588 Msa0719980:CDS 40.0%
! GTTTTCTTTGTGCCCTCAAA+TGG - chr5_1:15693695-15693714 Msa0719980:intron 40.0%
AAAAAAAAAAACGGGGGGAG+GGG + chr5_1:15693822-15693841 None:intergenic 40.0%
! GGAACCATACCTTTAGAAGT+AGG - chr5_1:15693940-15693959 Msa0719980:intron 40.0%
AGCACAAAGCCTACTTCTAA+AGG + chr5_1:15693952-15693971 None:intergenic 40.0%
AACTGGCATGCATATGAAAG+GGG + chr5_1:15694017-15694036 None:intergenic 40.0%
GAACTGGCATGCATATGAAA+GGG + chr5_1:15694018-15694037 None:intergenic 40.0%
!! AGATATGAGGTGCTGTAAGA+TGG + chr5_1:15694040-15694059 None:intergenic 40.0%
! CATGCCCCTTTTCATTCAAA+TGG - chr5_1:15694106-15694125 Msa0719980:intron 40.0%
ACTATCTTCGCTCTTTCTAG+GGG + chr5_1:15694256-15694275 None:intergenic 40.0%
AATCAAACGAGACGGGATTT+CGG + chr5_1:15694537-15694556 None:intergenic 40.0%
ATTCCAGGCAAATTTGTGAC+GGG + chr5_1:15694678-15694697 None:intergenic 40.0%
GAACCCATAAATCGGAATCA+AGG + chr5_1:15694831-15694850 None:intergenic 40.0%
AGCAGCAATGCAATAATAGC+TGG + chr5_1:15694975-15694994 None:intergenic 40.0%
TCCACATATTGCTGAGAACT+TGG - chr5_1:15695007-15695026 Msa0719980:intron 40.0%
ACCAAGTTCTCAGCAATATG+TGG + chr5_1:15695011-15695030 None:intergenic 40.0%
GTTCTACAGATTTATGTGGC+AGG - chr5_1:15695111-15695130 Msa0719980:intron 40.0%
TGCTGGCATATTTCCTAATG+AGG - chr5_1:15695219-15695238 Msa0719980:intron 40.0%
! CTTTTCATCTCTACAAGTGC+TGG + chr5_1:15695329-15695348 None:intergenic 40.0%
AGCAAATACACGAAGTCTGA+AGG - chr5_1:15695352-15695371 Msa0719980:intron 40.0%
TACACGAAGTCTGAAGGAAA+TGG - chr5_1:15695358-15695377 Msa0719980:intron 40.0%
ATGCACATACCTTAAAAGCG+TGG + chr5_1:15695384-15695403 None:intergenic 40.0%
ATAATTTGGATTGCCCCAAG+CGG - chr5_1:15695674-15695693 Msa0719980:intron 40.0%
GCATAACCAGTTGTTTGCAA+AGG - chr5_1:15696003-15696022 Msa0719980:intron 40.0%
AAGCAACCTTTGCAAACAAC+TGG + chr5_1:15696012-15696031 None:intergenic 40.0%
CATGGATAATTCATCACGGA+TGG - chr5_1:15696160-15696179 Msa0719980:intron 40.0%
CTAAGTGCATAACATCCTCT+CGG - chr5_1:15696432-15696451 Msa0719980:intron 40.0%
ACCCTTTGATTCTTCTTCAG+TGG - chr5_1:15696526-15696545 Msa0719980:CDS 40.0%
GTCCACTGAAGAAGAATCAA+AGG + chr5_1:15696531-15696550 None:intergenic 40.0%
ATAGGATAGATATGACCTGG+TGG + chr5_1:15696584-15696603 None:intergenic 40.0%
ACCAGGTCATATCTATCCTA+TGG - chr5_1:15696583-15696602 Msa0719980:CDS 40.0%
TCATGGCACAATATTGCCAT+AGG + chr5_1:15696602-15696621 None:intergenic 40.0%
AAGGAACACCATACCTTAAG+TGG + chr5_1:15696638-15696657 None:intergenic 40.0%
! TTGACACCGTGTAATTTTGC+AGG - chr5_1:15696699-15696718 Msa0719980:intron 40.0%
GTGTCGGAAAAGCTTATTTC+TGG + chr5_1:15696787-15696806 None:intergenic 40.0%
! AGGATTTTCACAAGAAGCAG+TGG + chr5_1:15696809-15696828 None:intergenic 40.0%
CAGCCATACTTCTTACTACA+AGG + chr5_1:15696953-15696972 None:intergenic 40.0%
! TTCTCATTCAAAGGCACACA+GGG + chr5_1:15697109-15697128 None:intergenic 40.0%
! TTTCTCATTCAAAGGCACAC+AGG + chr5_1:15697110-15697129 None:intergenic 40.0%
CAGTACCAAATGTGAACCTT+TGG - chr5_1:15697153-15697172 Msa0719980:intron 40.0%
ACCCAAGGATACTGAATACT+GGG + chr5_1:15697304-15697323 None:intergenic 40.0%
AAGTTTGAGCATATGACCCA+AGG + chr5_1:15697319-15697338 None:intergenic 40.0%
ATTGGAACATGGGTTCTGTA+TGG - chr5_1:15697448-15697467 Msa0719980:intron 40.0%
!!! CAATCCTTTTTTGCCGTGTA+TGG + chr5_1:15697546-15697565 None:intergenic 40.0%
CATACACGGCAAAAAAGGAT+TGG - chr5_1:15697544-15697563 Msa0719980:intron 40.0%
TCAAATCCGAACTACTTCCA+TGG + chr5_1:15697602-15697621 None:intergenic 40.0%
! GCTTGAATTTTCATGGCTGA+AGG - chr5_1:15697852-15697871 Msa0719980:intron 40.0%
! ACTGTCTTTTACTGCATCCA+AGG - chr5_1:15697954-15697973 Msa0719980:CDS 40.0%
! CTGTCTTTTACTGCATCCAA+GGG - chr5_1:15697955-15697974 Msa0719980:CDS 40.0%
TCTCTTATCAGTCAATGGAC+TGG + chr5_1:15698107-15698126 None:intergenic 40.0%
TTTGACCTCTGCTTATACTG+TGG + chr5_1:15698299-15698318 None:intergenic 40.0%
AGCAGAGGTCAAAATGCAAT+TGG - chr5_1:15698306-15698325 Msa0719980:exon 40.0%
GCGGTTGAAGGAGAAGAAAA+TGG + chr5_1:15690330-15690349 None:intergenic 45.0%
GGAGAGAAAAATGCGGTTGA+AGG + chr5_1:15690342-15690361 None:intergenic 45.0%
TCTAGGGGGAGAGAAAAATG+CGG + chr5_1:15690349-15690368 None:intergenic 45.0%
!! GAAGAATATGAGGCTCTAGG+GGG + chr5_1:15690363-15690382 None:intergenic 45.0%
GTTTGGTTAGACTGTTTGGG+AGG - chr5_1:15690890-15690909 Msa0719980:intron 45.0%
CTGTTTGGGAGGATAACTTG+TGG - chr5_1:15690901-15690920 Msa0719980:intron 45.0%
CACATATAGCTGGCCATGTT+TGG + chr5_1:15691091-15691110 None:intergenic 45.0%
AGCGACATCACACATATAGC+TGG + chr5_1:15691101-15691120 None:intergenic 45.0%
! AATAGTGGGAGGCAAAGTTC+CGG + chr5_1:15691476-15691495 None:intergenic 45.0%
TCCATCCCTTCAGCAATAGT+GGG + chr5_1:15691490-15691509 None:intergenic 45.0%
TTCCATCCCTTCAGCAATAG+TGG + chr5_1:15691491-15691510 None:intergenic 45.0%
TAGTTCGTTAATTTCCGGGC+TGG - chr5_1:15691747-15691766 Msa0719980:CDS 45.0%
GTCCATTCTCCATAACCCAT+AGG - chr5_1:15692514-15692533 Msa0719980:intron 45.0%
! AGCACGTTGGTTGAAGCTAA+TGG - chr5_1:15692549-15692568 Msa0719980:CDS 45.0%
GTATTTGAGCGACACAAGAC+AGG + chr5_1:15692630-15692649 None:intergenic 45.0%
GCTGTATCCTGTATGAATCC+TGG - chr5_1:15692667-15692686 Msa0719980:intron 45.0%
AGAATGCCCAGGATTCATAC+AGG + chr5_1:15692677-15692696 None:intergenic 45.0%
AGTTTATACGCACCCACAGA+TGG - chr5_1:15692957-15692976 Msa0719980:intron 45.0%
AAACTCCCAAACAGAGCCTT+AGG + chr5_1:15693031-15693050 None:intergenic 45.0%
TAAGGCTCTGTTTGGGAGTT+TGG - chr5_1:15693030-15693049 Msa0719980:intron 45.0%
! AGAATGGAGAGCTTTGTGAG+GGG - chr5_1:15693101-15693120 Msa0719980:intron 45.0%
ACGAAATCCCCCTAATTTGG+GGG - chr5_1:15693156-15693175 Msa0719980:intron 45.0%
TGTAGTTCCCCCAAATTAGG+GGG + chr5_1:15693166-15693185 None:intergenic 45.0%
CTTTCGAGGGATGAGATTAG+AGG + chr5_1:15693342-15693361 None:intergenic 45.0%
!! GTTTAGGATTTTGGAGGGGA+GGG + chr5_1:15693365-15693384 None:intergenic 45.0%
!! TGTTTAGGATTTTGGAGGGG+AGG + chr5_1:15693366-15693385 None:intergenic 45.0%
GAAGGCTGGCAATATGATGT+AGG + chr5_1:15693446-15693465 None:intergenic 45.0%
GTCATAGGACAATGGAGAAG+AGG + chr5_1:15693482-15693501 None:intergenic 45.0%
AACACGTGGTCATAGGACAA+TGG + chr5_1:15693490-15693509 None:intergenic 45.0%
AGTTGCTCATGGCAAACCAT+AGG - chr5_1:15693580-15693599 Msa0719980:CDS 45.0%
! TGAGGGCACAAAGAAAACTG+AGG + chr5_1:15693693-15693712 None:intergenic 45.0%
GGAACTGGCATGCATATGAA+AGG + chr5_1:15694019-15694038 None:intergenic 45.0%
TTGTGCAGCACTTCTTACGT+TGG - chr5_1:15694080-15694099 Msa0719980:intron 45.0%
AATGGAAGAGCAGCTTAAGC+AGG - chr5_1:15694124-15694143 Msa0719980:intron 45.0%
CAGGTGCCAATTTCTAACGT+TGG - chr5_1:15694143-15694162 Msa0719980:intron 45.0%
! TATCTTCGCTCTTTCTAGGG+GGG + chr5_1:15694254-15694273 None:intergenic 45.0%
CTATCTTCGCTCTTTCTAGG+GGG + chr5_1:15694255-15694274 None:intergenic 45.0%
!! AGTTAGTCTTCTTCAGGTGG+TGG - chr5_1:15694403-15694422 Msa0719980:intron 45.0%
TAGCTGGATCAGCTTCACTT+TGG + chr5_1:15694959-15694978 None:intergenic 45.0%
ATACTGAAGGGCTTGCATAG+AGG + chr5_1:15695156-15695175 None:intergenic 45.0%
CTATGCAAGCCCTTCAGTAT+TGG - chr5_1:15695156-15695175 Msa0719980:intron 45.0%
! AGGAAATGGCCACGCTTTTA+AGG - chr5_1:15695372-15695391 Msa0719980:intron 45.0%
ATAATTCATCACGGATGGGC+TGG - chr5_1:15696165-15696184 Msa0719980:intron 45.0%
CTACAAATGAAGTCCCGGTT+TGG - chr5_1:15696197-15696216 Msa0719980:intron 45.0%
ACTCCACATTTGAGCCAAAC+CGG + chr5_1:15696214-15696233 None:intergenic 45.0%
CGAGAGGATGTTATGCACTT+AGG + chr5_1:15696434-15696453 None:intergenic 45.0%
ATTGGTTGTATTGCACCGAG+AGG + chr5_1:15696450-15696469 None:intergenic 45.0%
CTGAATGCCTCGTATAAGCA+TGG + chr5_1:15696504-15696523 None:intergenic 45.0%
! CATGCTTATACGAGGCATTC+AGG - chr5_1:15696502-15696521 Msa0719980:intron 45.0%
CTTCAGTGGACAATATGCGA+AGG - chr5_1:15696540-15696559 Msa0719980:CDS 45.0%
GCCATAGGATAGATATGACC+TGG + chr5_1:15696587-15696606 None:intergenic 45.0%
CATAATGCCTCCTCCACTTA+AGG - chr5_1:15696622-15696641 Msa0719980:intron 45.0%
GAACACCATACCTTAAGTGG+AGG + chr5_1:15696635-15696654 None:intergenic 45.0%
! GTGTTCCTTCCTTTGAGAGT+TGG - chr5_1:15696649-15696668 Msa0719980:intron 45.0%
ATATCAGGGCCAACTCTCAA+AGG + chr5_1:15696661-15696680 None:intergenic 45.0%
TTCACAAGAAGCAGTGGTGT+CGG + chr5_1:15696803-15696822 None:intergenic 45.0%
TCGAGCTACGTAGCATTCTT+AGG + chr5_1:15696976-15696995 None:intergenic 45.0%
! TCTCATTCAAAGGCACACAG+GGG + chr5_1:15697108-15697127 None:intergenic 45.0%
AGGGTCCAAAGGTTCACATT+TGG + chr5_1:15697161-15697180 None:intergenic 45.0%
AGCCCAGTATTCAGTATCCT+TGG - chr5_1:15697299-15697318 Msa0719980:intron 45.0%
GCCCAGTATTCAGTATCCTT+GGG - chr5_1:15697300-15697319 Msa0719980:intron 45.0%
GACCCAAGGATACTGAATAC+TGG + chr5_1:15697305-15697324 None:intergenic 45.0%
TCTGCCATACACGGCAAAAA+AGG - chr5_1:15697539-15697558 Msa0719980:intron 45.0%
ACAGACGCGTCTTGTAGATT+AGG - chr5_1:15697699-15697718 Msa0719980:intron 45.0%
GATGTGGTAAGGAACTAGGA+GGG + chr5_1:15698085-15698104 None:intergenic 45.0%
ACTGGATGTGGTAAGGAACT+AGG + chr5_1:15698089-15698108 None:intergenic 45.0%
!! TCAATGGACTGGATGTGGTA+AGG + chr5_1:15698096-15698115 None:intergenic 45.0%
!! ATCAGTCAATGGACTGGATG+TGG + chr5_1:15698101-15698120 None:intergenic 45.0%
!! AATAAATAATAACATTTAAT+TGG - chr5_1:15691252-15691271 Msa0719980:intron 5.0%
!!! TTTTCAAAAAAAAAAAAAAA+CGG + chr5_1:15693831-15693850 None:intergenic 5.0%
!! ATACAAAAAAAAAAAAAAAT+TGG + chr5_1:15698145-15698164 None:intergenic 5.0%
! TCGCGTGTCGATAATTCGCT+CGG - chr5_1:15690657-15690676 Msa0719980:intron 50.0%
TTGCCTCCCACTATTGCTGA+AGG - chr5_1:15691481-15691500 Msa0719980:intron 50.0%
TGCCTCCCACTATTGCTGAA+GGG - chr5_1:15691482-15691501 Msa0719980:intron 50.0%
! ATCCCTTCAGCAATAGTGGG+AGG + chr5_1:15691487-15691506 None:intergenic 50.0%
TCCCACTATTGCTGAAGGGA+TGG - chr5_1:15691486-15691505 Msa0719980:intron 50.0%
AAACAGAGCCTTAGGCTCTG+AGG + chr5_1:15693023-15693042 None:intergenic 50.0%
TCAGAGCCTAAGGCTCTGTT+TGG - chr5_1:15693022-15693041 Msa0719980:intron 50.0%
CAGAGCCTAAGGCTCTGTTT+GGG - chr5_1:15693023-15693042 Msa0719980:intron 50.0%
GCTCTGTTTGGGAGTTTGGA+GGG - chr5_1:15693034-15693053 Msa0719980:intron 50.0%
CTCTGTTTGGGAGTTTGGAG+GGG - chr5_1:15693035-15693054 Msa0719980:intron 50.0%
GACAATGGAGAAGAGGGTGA+TGG + chr5_1:15693475-15693494 None:intergenic 50.0%
TGATGAGCACCCCTATTGCA+GGG + chr5_1:15693524-15693543 None:intergenic 50.0%
!! GAGGTGCTGTAAGATGGAAC+TGG + chr5_1:15694034-15694053 None:intergenic 50.0%
TGACGGGAAGAACCTTACAC+TGG + chr5_1:15694662-15694681 None:intergenic 50.0%
CTTCCCGTCACAAATTTGCC+TGG - chr5_1:15694672-15694691 Msa0719980:intron 50.0%
CTGGATCAGCTTCACTTTGG+TGG + chr5_1:15694956-15694975 None:intergenic 50.0%
GAAGGGCTTGCATAGAGGAT+CGG + chr5_1:15695151-15695170 None:intergenic 50.0%
ATCGACCAGTTGCCAACTCT+GGG - chr5_1:15695705-15695724 Msa0719980:intron 50.0%
!! AGTTGCCAACTCTGGGGTAT+GGG - chr5_1:15695712-15695731 Msa0719980:intron 50.0%
AACATCATGAGCTCGACTGC+TGG + chr5_1:15695890-15695909 None:intergenic 50.0%
CTCCACATTTGAGCCAAACC+GGG + chr5_1:15696213-15696232 None:intergenic 50.0%
CGAAGGCTTGTCGATCATTC+AGG - chr5_1:15696557-15696576 Msa0719980:CDS 50.0%
!! GTGGAGGAGGCATTATGTCA+TGG + chr5_1:15696619-15696638 None:intergenic 50.0%
TGCCTCCTCCACTTAAGGTA+TGG - chr5_1:15696627-15696646 Msa0719980:intron 50.0%
CACCATACCTTAAGTGGAGG+AGG + chr5_1:15696632-15696651 None:intergenic 50.0%
AGTTTCGGTAGAGGGTCCAA+AGG + chr5_1:15697172-15697191 None:intergenic 50.0%
ACATGGGTTCTGTATGGTGC+AGG - chr5_1:15697454-15697473 Msa0719980:intron 50.0%
TCGCAGCCATGGAAGTAGTT+CGG - chr5_1:15697593-15697612 Msa0719980:intron 50.0%
GGAAATTTCCATCGAGCCCT+TGG + chr5_1:15697974-15697993 None:intergenic 50.0%
GGATGTGGTAAGGAACTAGG+AGG + chr5_1:15698086-15698105 None:intergenic 50.0%
ACGTGCCACAGTATAAGCAG+AGG - chr5_1:15698291-15698310 Msa0719980:CDS 50.0%
!! CGTTAATTTCCGGGCTGGCT+TGG - chr5_1:15691752-15691771 Msa0719980:CDS 55.0%
! CTCTGGAAGGTAGAATGCCC+AGG + chr5_1:15692688-15692707 None:intergenic 55.0%
CTACCTTGCCTCAGAGCCTA+AGG - chr5_1:15693012-15693031 Msa0719980:intron 55.0%
GGCTCTGTTTGGGAGTTTGG+AGG - chr5_1:15693033-15693052 Msa0719980:intron 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr5_1:15693038-15693057 Msa0719980:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr5_1:15693039-15693058 Msa0719980:intron 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - chr5_1:15693040-15693059 Msa0719980:intron 55.0%
! ATGGAGAGCTTTGTGAGGGG+AGG - chr5_1:15693104-15693123 Msa0719980:intron 55.0%
! TGGAGAGCTTTGTGAGGGGA+GGG - chr5_1:15693105-15693124 Msa0719980:intron 55.0%
TTTGTGAGGGGAGGGCTTTG+AGG - chr5_1:15693113-15693132 Msa0719980:intron 55.0%
! TTGTGAGGGGAGGGCTTTGA+GGG - chr5_1:15693114-15693133 Msa0719980:intron 55.0%
!! GAGAAGAGGGTGATGGAAGC+GGG + chr5_1:15693468-15693487 None:intergenic 55.0%
!! GGAGAAGAGGGTGATGGAAG+CGG + chr5_1:15693469-15693488 None:intergenic 55.0%
CTGATGAGCACCCCTATTGC+AGG + chr5_1:15693525-15693544 None:intergenic 55.0%
AAAAAAACGGGGGGAGGGGA+GGG + chr5_1:15693818-15693837 None:intergenic 55.0%
AAAAAAAACGGGGGGAGGGG+AGG + chr5_1:15693819-15693838 None:intergenic 55.0%
! CGCTCTTTCTAGGGGGGAAA+AGG + chr5_1:15694248-15694267 None:intergenic 55.0%
!! GCAAGCCCTTCAGTATTGGC+AGG - chr5_1:15695160-15695179 Msa0719980:intron 55.0%
ATTTGGATTGCCCCAAGCGG+TGG - chr5_1:15695677-15695696 Msa0719980:intron 55.0%
GATCGACCAGTTGCCAACTC+TGG - chr5_1:15695704-15695723 Msa0719980:intron 55.0%
TCGACCAGTTGCCAACTCTG+GGG - chr5_1:15695706-15695725 Msa0719980:intron 55.0%
CATACCCCAGAGTTGGCAAC+TGG + chr5_1:15695713-15695732 None:intergenic 55.0%
!! CAGTTGCCAACTCTGGGGTA+TGG - chr5_1:15695711-15695730 Msa0719980:intron 55.0%
!! TCATCACGGATGGGCTGGTT+AGG - chr5_1:15696170-15696189 Msa0719980:intron 55.0%
!! CATCACGGATGGGCTGGTTA+GGG - chr5_1:15696171-15696190 Msa0719980:intron 55.0%
!! ATCACGGATGGGCTGGTTAG+GGG - chr5_1:15696172-15696191 Msa0719980:intron 55.0%
GGGGGCTACAAATGAAGTCC+CGG - chr5_1:15696192-15696211 Msa0719980:intron 55.0%
!! GTCCCGGTTTGGCTCAAATG+TGG - chr5_1:15696208-15696227 Msa0719980:intron 55.0%
GTCGATCATTCAGGTCCACC+AGG - chr5_1:15696566-15696585 Msa0719980:CDS 55.0%
CAGGGCCAACTCTCAAAGGA+AGG + chr5_1:15696657-15696676 None:intergenic 55.0%
! CATTCAAAGGCACACAGGGG+AGG + chr5_1:15697105-15697124 None:intergenic 55.0%
GTGCTGGAGTCTGCCATACA+CGG - chr5_1:15697530-15697549 Msa0719980:intron 55.0%
TGGCTGCGACAAGGAAACTG+CGG + chr5_1:15697582-15697601 None:intergenic 55.0%
CAGTTTCCTTGTCGCAGCCA+TGG - chr5_1:15697582-15697601 Msa0719980:intron 55.0%
CTACTTCCATGGCTGCGACA+AGG + chr5_1:15697591-15697610 None:intergenic 55.0%
TACTGCATCCAAGGGCTCGA+TGG - chr5_1:15697963-15697982 Msa0719980:CDS 55.0%
!! TTTCCGGGCTGGCTTGGAGT+TGG - chr5_1:15691758-15691777 Msa0719980:CDS 60.0%
ACACCAACTCCAAGCCAGCC+CGG + chr5_1:15691764-15691783 None:intergenic 60.0%
!! GAGCCTTAGGCTCTGAGGCA+AGG + chr5_1:15693018-15693037 None:intergenic 60.0%
GAGTTTGGAGGGGAGGGGAA+GGG - chr5_1:15693045-15693064 Msa0719980:intron 60.0%
!! TGTGAGGGGAGGGCTTTGAG+GGG - chr5_1:15693115-15693134 Msa0719980:intron 60.0%
TTGGAGGGGAGGGCTTTCGA+GGG + chr5_1:15693355-15693374 None:intergenic 60.0%
TTTGGAGGGGAGGGCTTTCG+AGG + chr5_1:15693356-15693375 None:intergenic 60.0%
!! AGAGGGTGATGGAAGCGGGA+AGG + chr5_1:15693464-15693483 None:intergenic 60.0%
AAAAAACGGGGGGAGGGGAG+GGG + chr5_1:15693817-15693836 None:intergenic 60.0%
GATTGCCCCAAGCGGTGGTA+GGG - chr5_1:15695682-15695701 Msa0719980:intron 60.0%
TCGATCCCTACCACCGCTTG+GGG + chr5_1:15695690-15695709 None:intergenic 60.0%
GTCGATCCCTACCACCGCTT+GGG + chr5_1:15695691-15695710 None:intergenic 60.0%
!! CAACTCTGGGGTATGGGCAC+CGG - chr5_1:15695718-15695737 Msa0719980:intron 60.0%
CGACTGCTGGAGTACGCTTC+TGG + chr5_1:15695877-15695896 None:intergenic 60.0%
!! TCACGGATGGGCTGGTTAGG+GGG - chr5_1:15696173-15696192 Msa0719980:intron 60.0%
GGCTGCGACAAGGAAACTGC+GGG + chr5_1:15697581-15697600 None:intergenic 60.0%
GGAGTTTGGAGGGGAGGGGA+AGG - chr5_1:15693044-15693063 Msa0719980:intron 65.0%
TTTGGAGGGGAGGGGAAGGG+AGG - chr5_1:15693048-15693067 Msa0719980:intron 65.0%
TTGGAGGGGAGGGGAAGGGA+GGG - chr5_1:15693049-15693068 Msa0719980:intron 65.0%
!! GGTGATGGAAGCGGGAAGGC+TGG + chr5_1:15693460-15693479 None:intergenic 65.0%
AAAAACGGGGGGAGGGGAGG+GGG + chr5_1:15693816-15693835 None:intergenic 65.0%
GGATTGCCCCAAGCGGTGGT+AGG - chr5_1:15695681-15695700 Msa0719980:intron 65.0%
GGTCGATCCCTACCACCGCT+TGG + chr5_1:15695692-15695711 None:intergenic 65.0%
CGGTGCCCATACCCCAGAGT+TGG + chr5_1:15695720-15695739 None:intergenic 65.0%
!! CACGGATGGGCTGGTTAGGG+GGG - chr5_1:15696174-15696193 Msa0719980:intron 65.0%
AAAACGGGGGGAGGGGAGGG+GGG + chr5_1:15693815-15693834 None:intergenic 70.0%
AAACGGGGGGAGGGGAGGGG+GGG + chr5_1:15693814-15693833 None:intergenic 75.0%
! AACGGGGGGAGGGGAGGGGG+GGG + chr5_1:15693813-15693832 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 15690186 15698379 15690186 ID=Msa0719980;Name=Msa0719980
chr5_1 mRNA 15690186 15698379 15690186 ID=Msa0719980-mRNA-1;Parent=Msa0719980;Name=Msa0719980-mRNA-1;_AED=0.19;_eAED=0.19;_QI=57|0.71|0.86|0.93|0.92|0.93|15|523|534
chr5_1 exon 15690186 15690664 15690186 ID=Msa0719980-mRNA-1:exon:6091;Parent=Msa0719980-mRNA-1
chr5_1 exon 15690911 15691089 15690911 ID=Msa0719980-mRNA-1:exon:6090;Parent=Msa0719980-mRNA-1
chr5_1 exon 15691731 15691844 15691731 ID=Msa0719980-mRNA-1:exon:6089;Parent=Msa0719980-mRNA-1
chr5_1 exon 15691922 15692041 15691922 ID=Msa0719980-mRNA-1:exon:6088;Parent=Msa0719980-mRNA-1
chr5_1 exon 15692541 15692618 15692541 ID=Msa0719980-mRNA-1:exon:6087;Parent=Msa0719980-mRNA-1
chr5_1 exon 15692826 15692904 15692826 ID=Msa0719980-mRNA-1:exon:6086;Parent=Msa0719980-mRNA-1
chr5_1 exon 15693172 15693282 15693172 ID=Msa0719980-mRNA-1:exon:6085;Parent=Msa0719980-mRNA-1
chr5_1 exon 15693384 15693445 15693384 ID=Msa0719980-mRNA-1:exon:6084;Parent=Msa0719980-mRNA-1
chr5_1 exon 15693537 15693638 15693537 ID=Msa0719980-mRNA-1:exon:6083;Parent=Msa0719980-mRNA-1
chr5_1 exon 15694236 15694322 15694236 ID=Msa0719980-mRNA-1:exon:6082;Parent=Msa0719980-mRNA-1
chr5_1 exon 15694420 15694477 15694420 ID=Msa0719980-mRNA-1:exon:6081;Parent=Msa0719980-mRNA-1
chr5_1 exon 15696252 15696349 15696252 ID=Msa0719980-mRNA-1:exon:6080;Parent=Msa0719980-mRNA-1
chr5_1 exon 15696518 15696604 15696518 ID=Msa0719980-mRNA-1:exon:6079;Parent=Msa0719980-mRNA-1
chr5_1 exon 15697028 15697125 15697028 ID=Msa0719980-mRNA-1:exon:6078;Parent=Msa0719980-mRNA-1
chr5_1 exon 15697947 15698379 15697947 ID=Msa0719980-mRNA-1:exon:6077;Parent=Msa0719980-mRNA-1
chr5_1 five_prime_UTR 15698323 15698379 15698323 ID=Msa0719980-mRNA-1:five_prime_utr;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15697947 15698322 15697947 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15697028 15697125 15697028 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15696518 15696604 15696518 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15696252 15696349 15696252 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15694420 15694477 15694420 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15694236 15694322 15694236 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15693537 15693638 15693537 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15693384 15693445 15693384 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15693172 15693282 15693172 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15692826 15692904 15692826 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15692541 15692618 15692541 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15691922 15692041 15691922 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15691731 15691844 15691731 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 CDS 15690955 15691089 15690955 ID=Msa0719980-mRNA-1:cds;Parent=Msa0719980-mRNA-1
chr5_1 three_prime_UTR 15690911 15690954 15690911 ID=Msa0719980-mRNA-1:three_prime_utr;Parent=Msa0719980-mRNA-1
chr5_1 three_prime_UTR 15690186 15690664 15690186 ID=Msa0719980-mRNA-1:three_prime_utr;Parent=Msa0719980-mRNA-1
Gene Sequence

>Msa0719980

ATGAGCGATTCTTTCGCACATTCTACGTCACACAATTGTTACTACCGTCACAAAAAGAAGAAATCTTCAACAATGTTTACAACACCATTTTCTTCTCCTTCAACCGCATTTTTCTCTCCCCCTAGAGCCTCATATTCTTCTTCTTCTTCTTCGTTACCTCTTCGTAGTTCTTCTTCTTCCACTTTTTTTCCTCTTCGATCTAATGCAACTACTTCTTCTTCTTCTTCTTCTGTAACAACTTCTGGAACTTCTTCTTCTTCCTCTTATTTTTCTCCTCTTGCTTTCTATACTAATAATAAAAAACCTAAAGAAATTTCTGCTAATATGGCTTCTTCTGTTTCTTCTCGTACTTTCCTCAATGCCAGAAATGAACAAGATGTTCTTTCTGGAATAAAGAAGGAAGTAGAAGCCGGAACTTTGCCTCCCACTATTGCTGAAGGGATGGAAGAATTGTACCTTAACTATAAAAGTGCAGTTATTAAAAGTGGAGATCCCAAAGCAGATGAGATTGTATTGTCAAATATGACTGCTTTATTAGATCGCATATTTTTGGATGTGAAGGAACCTTTTGTCTTTGAAGCATACCATAAAGCAAAGAGAGAGCCTTTTGACTACTACATGTTTGGCCAAAATTATATTCGTCCCTTAGTTGATTTCAACACTTCTTACGTTGGTAACATGCCCCTTTTCATTCAAATGGAAGAGCAGCTTAAGCAGAACCTTTTCCCCCCTAGAAAGAGCGAAGATAGTAATAGAAAGTTAAATATTCCTCCCTTATTATATGTACCATTACCAAATTCTAAGGGACACAATATTATCTTGATGTCAAACCACCAAAGTGAAGCTGATCCAGCTATTATTGCATTGCTGCTTGAAATGCGACTTCCACATATTGCTGAGAACTTGATTTATGTGGCAGGAGATAGAGTTATAACCGATCCTCTATGCAAGCCCTTCAGTATTGGCAGGAATCTGATCTGTGTTTATTCAAAAAAGCACATGCTTGATGATCCAGCACTTGTAGAGATGAAAAGAAAAGCAAATACACGAAGTCTGAAGGAAATGGCCACGCTTTTAAGGAGTGGATCACAAATAATTTGGATTGCCCCAAGCGGTGGTAGGGATCGACCAGTTGCCAACTCTGGGGTATGGGCACCGAATGATAAAGTACATATGTTAGATAGGATTGGAGCCATGTCTAACCCTCTATTTAAGCATAACCAGTTGTTTGCAAAGGCACCCTTTGATTCTTCTTCAGTGGACAATATGCGAAGGCTTGTCGATCATTCAGGTCCACCAGGTCATATCTATCCTATGGCAATATTGTGCCATGACATAATGCCTCCTCCACTTAAGGTTGAAAAAGAAATTGGGGAGAAAAGAATTATATCATATCATGGGACTGGCATATCACTTGCTCCAGAAATAAGCTTTTCCGACACCACTGCTTCTTGTGAAAATCCTGAAAAGGCTAAAGAAACATACTCAAAAGCCTTGTATGATTCTGTGACTAATCAATATGATGTGCTGGAGTCTGCCATACACGGCAAAAAAGGATTGGAAGCATCAACTCCCGCAGTTTCCTTGTCGCAGCCATGGAAGTAG

Protein sequence

>Msa0719980

MSDSFAHSTSHNCYYRHKKKKSSTMFTTPFSSPSTAFFSPPRASYSSSSSSLPLRSSSSSTFFPLRSNATTSSSSSSVTTSGTSSSSSYFSPLAFYTNNKKPKEISANMASSVSSRTFLNARNEQDVLSGIKKEVEAGTLPPTIAEGMEELYLNYKSAVIKSGDPKADEIVLSNMTALLDRIFLDVKEPFVFEAYHKAKREPFDYYMFGQNYIRPLVDFNTSYVGNMPLFIQMEEQLKQNLFPPRKSEDSNRKLNIPPLLYVPLPNSKGHNIILMSNHQSEADPAIIALLLEMRLPHIAENLIYVAGDRVITDPLCKPFSIGRNLICVYSKKHMLDDPALVEMKRKANTRSLKEMATLLRSGSQIIWIAPSGGRDRPVANSGVWAPNDKVHMLDRIGAMSNPLFKHNQLFAKAPFDSSSVDNMRRLVDHSGPPGHIYPMAILCHDIMPPPLKVEKEIGEKRIISYHGTGISLAPEISFSDTTASCENPEKAKETYSKALYDSVTNQYDVLESAIHGKKGLEASTPAVSLSQPWK*