AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802770 MtrunA17_Chr5g0410661 87.226 274 15 1 15 288 228 481 8.77e-173 486
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802770 AT1G32200.1 65.714 280 75 2 9 287 199 458 2.89e-134 388
Msa0802770 AT1G32200.2 65.714 280 75 2 9 287 199 458 2.89e-134 388

Find 130 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACCTTGATTCCGATTTA+TGG 0.127550 5_3:-17424248 Msa0802770:exon
GAACCTTACACTGGTAAATT+TGG 0.163539 5_3:+17424422 None:intergenic
AAAATTGGTAAAATTATATT+TGG 0.216776 5_3:+17420945 None:intergenic
TTACTATCTTCGCTCTTTCT+AGG 0.218085 5_3:+17425149 None:intergenic
CAGATACCAACCTTAGAATT+TGG 0.237376 5_3:+17425086 None:intergenic
GGAGTGGATCACAAATAATT+TGG 0.242672 5_3:-17423412 Msa0802770:CDS
GTGTCGGAAAAGCTTATTTC+TGG 0.251355 5_3:+17422288 None:intergenic
TGGTAATGGTACATATAATA+AGG 0.262871 5_3:+17425106 None:intergenic
GTGATAACTGTAGTACTTAA+TGG 0.272776 5_3:+17424322 None:intergenic
CATGCTTATACGAGGCATTC+AGG 0.297292 5_3:-17422570 Msa0802770:intron
CAACCTTGATTCCGATTTAT+GGG 0.307794 5_3:-17424247 Msa0802770:exon
TGTACCATTACCAAATTCTA+AGG 0.312534 5_3:-17425096 Msa0802770:five_prime_UTR
CTGAAACAGATTACTGATAA+TGG 0.323405 5_3:+17421041 None:intergenic
GTCGATCCCTACCACCGCTT+GGG 0.326320 5_3:+17423384 None:intergenic
AATCAAACGAGACGGGATTT+CGG 0.332560 5_3:+17424538 None:intergenic
CGAAGGCTTGTCGATCATTC+AGG 0.340682 5_3:-17422515 Msa0802770:CDS
TGTAAAAGTTAGTCTTCTTC+AGG 0.343582 5_3:-17424675 Msa0802770:five_prime_UTR
TGATAACTGTAGTACTTAAT+GGG 0.347639 5_3:+17424323 None:intergenic
TACTATCTTCGCTCTTTCTA+GGG 0.377332 5_3:+17425150 None:intergenic
GTCTTCAGATCAGTTTCATT+AGG 0.383668 5_3:-17424497 Msa0802770:five_prime_UTR
CGCAGAATTGCAATTAAGTT+CGG 0.391762 5_3:+17424464 None:intergenic
AGCAAGCATTTGAATGAAAA+GGG 0.393479 5_3:+17425230 None:intergenic
CATAATGCCTCCTCCACTTA+AGG 0.402090 5_3:-17422450 Msa0802770:intron
TTACAAGAAAGTGAACTTAC+CGG 0.405473 5_3:+17423335 None:intergenic
CTGGATCAGCTTCACTTTGG+TGG 0.409775 5_3:+17424119 None:intergenic
AAGCAAGCATTTGAATGAAA+AGG 0.410363 5_3:+17425229 None:intergenic
AAACCAAATTTACCAGTGTA+AGG 0.411990 5_3:-17424425 Msa0802770:five_prime_UTR
ATTTAACTCAAAATTACAAA+TGG 0.415465 5_3:+17420865 None:intergenic
AGCAGAGGTCAAAATGCAAT+TGG 0.416702 5_3:-17420766 Msa0802770:three_prime_UTR
TCCACATATTGCTGAGAACT+TGG 0.418931 5_3:-17424065 Msa0802770:intron
GGAAATTTCCATCGAGCCCT+TGG 0.422026 5_3:+17421101 None:intergenic
ATCTAGCATTGACAAATTCC+AGG 0.427023 5_3:+17424382 None:intergenic
TAAGAATTGTACCTGAAAAT+CGG 0.431216 5_3:+17421428 None:intergenic
TGAATAATTTGATGATGAAA+AGG 0.432945 5_3:+17420805 None:intergenic
TTTGGTCTCTTATCAGTCAA+TGG 0.435531 5_3:+17420963 None:intergenic
CTTCCCGTCACAAATTTGCC+TGG 0.446549 5_3:-17424400 Msa0802770:five_prime_UTR
AAAAGAATTATATCATATCA+TGG 0.448408 5_3:-17422330 Msa0802770:CDS
GGTCGATCCCTACCACCGCT+TGG 0.456868 5_3:+17423383 None:intergenic
CTATGCAAGCCCTTCAGTAT+TGG 0.458759 5_3:-17423916 Msa0802770:CDS
ATCGACCAGTTGCCAACTCT+GGG 0.459369 5_3:-17423367 Msa0802770:CDS
CAGTTGCCAACTCTGGGGTA+TGG 0.466803 5_3:-17423361 Msa0802770:CDS
ATTTATGAATATGTTAACAT+AGG 0.466873 5_3:+17424207 None:intergenic
AGCAGCAATGCAATAATAGC+TGG 0.469163 5_3:+17424100 None:intergenic
ATACACAAGAACCCATAAAT+CGG 0.472430 5_3:+17424236 None:intergenic
CAACTCTGGGGTATGGGCAC+CGG 0.473989 5_3:-17423354 Msa0802770:CDS
TCGCAGCCATGGAAGTAGTT+CGG 0.476275 5_3:-17421479 Msa0802770:exon
GGTAATGGTACATATAATAA+GGG 0.480317 5_3:+17425107 None:intergenic
TTGAAAAGAAAATATTTGAC+AGG 0.480447 5_3:+17421080 None:intergenic
GACTAATCAATATGATGTGC+TGG 0.480585 5_3:-17421558 Msa0802770:CDS
TACACGAAGTCTGAAGGAAA+TGG 0.484728 5_3:-17423714 Msa0802770:CDS
GATCGACCAGTTGCCAACTC+TGG 0.486441 5_3:-17423368 Msa0802770:CDS
TTTATGAATATGTTAACATA+GGG 0.501303 5_3:+17424208 None:intergenic
ACCAGGTCATATCTATCCTA+TGG 0.501822 5_3:-17422489 Msa0802770:CDS
TGTTAACATATTCATAAATG+TGG 0.503619 5_3:-17424203 Msa0802770:CDS
TTTGACCTCTGCTTATACTG+TGG 0.503827 5_3:+17420776 None:intergenic
AGTTGCCAACTCTGGGGTAT+GGG 0.506428 5_3:-17423360 Msa0802770:CDS
CAGTTTCCTTGTCGCAGCCA+TGG 0.507421 5_3:-17421490 Msa0802770:CDS
GTTCTACAGATTTATGTGGC+AGG 0.508344 5_3:-17423961 Msa0802770:intron
CCATTACCAAATTCTAAGGT+TGG 0.511752 5_3:-17425092 Msa0802770:five_prime_UTR
AGTTAGTCTTCTTCAGGTGG+TGG 0.512178 5_3:-17424669 Msa0802770:five_prime_UTR
CCAACCTTAGAATTTGGTAA+TGG 0.514063 5_3:+17425092 None:intergenic
TTCTTGTGAAAATCCTGAAA+AGG 0.514517 5_3:-17422259 Msa0802770:intron
CAAGGTTGACATTTCATGAA+AGG 0.515200 5_3:+17424262 None:intergenic
AAGGAACACCATACCTTAAG+TGG 0.516572 5_3:+17422437 None:intergenic
GATTGCCCCAAGCGGTGGTA+GGG 0.516655 5_3:-17423390 Msa0802770:CDS
GCAAGCCCTTCAGTATTGGC+AGG 0.519641 5_3:-17423912 Msa0802770:intron
ATCAGTCAATGGACTGGATG+TGG 0.519841 5_3:+17420974 None:intergenic
CATACCCCAGAGTTGGCAAC+TGG 0.523117 5_3:+17423362 None:intergenic
GTCCACTGAAGAAGAATCAA+AGG 0.524090 5_3:+17422544 None:intergenic
ACCAAGTTCTCAGCAATATG+TGG 0.525585 5_3:+17424064 None:intergenic
ATTATATCATATCATGGGAC+TGG 0.526296 5_3:-17422324 Msa0802770:CDS
ACCCTTTGATTCTTCTTCAG+TGG 0.526415 5_3:-17422546 Msa0802770:CDS
GAACCCATAAATCGGAATCA+AGG 0.527502 5_3:+17424244 None:intergenic
GTTAACATATTCATAAATGT+GGG 0.527701 5_3:-17424202 Msa0802770:CDS
TACTGCATCCAAGGGCTCGA+TGG 0.529105 5_3:-17421109 Msa0802770:three_prime_UTR
GGATTGCCCCAAGCGGTGGT+AGG 0.529108 5_3:-17423391 Msa0802770:CDS
TATCAGTAATCTGTTTCAGA+AGG 0.532309 5_3:-17421037 Msa0802770:three_prime_UTR
TAGCTGGATCAGCTTCACTT+TGG 0.539217 5_3:+17424116 None:intergenic
TTCACAAGAAGCAGTGGTGT+CGG 0.540293 5_3:+17422272 None:intergenic
AAATGTTGACATAATTTGCA+TGG 0.541507 5_3:+17424605 None:intergenic
AGCAAATACACGAAGTCTGA+AGG 0.545413 5_3:-17423720 Msa0802770:CDS
ATTCCAGGCAAATTTGTGAC+GGG 0.547008 5_3:+17424397 None:intergenic
CACCATACCTTAAGTGGAGG+AGG 0.547777 5_3:+17422443 None:intergenic
ACTGGATGTGGTAAGGAACT+AGG 0.548773 5_3:+17420986 None:intergenic
AATCTCTGATGTGAATCAGT+TGG 0.554900 5_3:+17421141 None:intergenic
GGCTGCGACAAGGAAACTGC+GGG 0.561455 5_3:+17421494 None:intergenic
TCATGGCACAATATTGCCAT+AGG 0.563505 5_3:+17422473 None:intergenic
AAAGAATTATATCATATCAT+GGG 0.565588 5_3:-17422329 Msa0802770:CDS
TCTCTTATCAGTCAATGGAC+TGG 0.565956 5_3:+17420968 None:intergenic
TGAAAACAATCAAACGAGAC+GGG 0.572255 5_3:+17424531 None:intergenic
TCAATGGACTGGATGTGGTA+AGG 0.573722 5_3:+17420979 None:intergenic
ACTATCTTCGCTCTTTCTAG+GGG 0.574261 5_3:+17425151 None:intergenic
GTCGATCATTCAGGTCCACC+AGG 0.579509 5_3:-17422506 Msa0802770:CDS
AATTCCAGGCAAATTTGTGA+CGG 0.581773 5_3:+17424396 None:intergenic
TATCTTCGCTCTTTCTAGGG+GGG 0.582786 5_3:+17425153 None:intergenic
AATGAACCTGCCAATACTGA+AGG 0.584236 5_3:+17423906 None:intergenic
TCCACTGAAGAAGAATCAAA+GGG 0.586505 5_3:+17422545 None:intergenic
ATTTGGATTGCCCCAAGCGG+TGG 0.587858 5_3:-17423395 Msa0802770:CDS
ATGAACCTGCCAATACTGAA+GGG 0.595857 5_3:+17423907 None:intergenic
TCAAATCCGAACTACTTCCA+TGG 0.597509 5_3:+17421473 None:intergenic
TTGAAAACAATCAAACGAGA+CGG 0.599309 5_3:+17424530 None:intergenic
GCATATTAAAATAAATAGCA+AGG 0.600593 5_3:+17424630 None:intergenic
AATGGTACATATAATAAGGG+AGG 0.603023 5_3:+17425110 None:intergenic
CTACTTCCATGGCTGCGACA+AGG 0.604817 5_3:+17421484 None:intergenic
CGGTGCCCATACCCCAGAGT+TGG 0.608757 5_3:+17423355 None:intergenic
TCGATCCCTACCACCGCTTG+GGG 0.610629 5_3:+17423385 None:intergenic
GTGGAGGAGGCATTATGTCA+TGG 0.612943 5_3:+17422456 None:intergenic
ATTAGTCACAGAATCATACA+AGG 0.614049 5_3:+17421574 None:intergenic
ATACTGAAGGGCTTGCATAG+AGG 0.616766 5_3:+17423919 None:intergenic
GAAGGGCTTGCATAGAGGAT+CGG 0.619436 5_3:+17423924 None:intergenic
AAAAGTTAGTCTTCTTCAGG+TGG 0.619601 5_3:-17424672 Msa0802770:five_prime_UTR
CTATCTTCGCTCTTTCTAGG+GGG 0.620555 5_3:+17425152 None:intergenic
GCCATAGGATAGATATGACC+TGG 0.629103 5_3:+17422488 None:intergenic
CTTCAGTGGACAATATGCGA+AGG 0.630655 5_3:-17422532 Msa0802770:CDS
GATAACTGTAGTACTTAATG+GGG 0.637259 5_3:+17424324 None:intergenic
TGGCTGCGACAAGGAAACTG+CGG 0.638817 5_3:+17421493 None:intergenic
TTAACATATTCATAAATGTG+GGG 0.642423 5_3:-17424201 Msa0802770:CDS
GCAAGCATTTGAATGAAAAG+GGG 0.655332 5_3:+17425231 None:intergenic
TGACGGGAAGAACCTTACAC+TGG 0.656092 5_3:+17424413 None:intergenic
GGATGTGGTAAGGAACTAGG+AGG 0.656917 5_3:+17420989 None:intergenic
TCAATCATAAATCTAGACTG+TGG 0.663017 5_3:-17424568 Msa0802770:five_prime_UTR
GAACACCATACCTTAAGTGG+AGG 0.667740 5_3:+17422440 None:intergenic
GTGCTGGAGTCTGCCATACA+CGG 0.674923 5_3:-17421542 Msa0802770:CDS
AATTGGATGATGATTCACAT+TGG 0.685531 5_3:-17420749 Msa0802770:three_prime_UTR
ATGCACATACCTTAAAAGCG+TGG 0.687163 5_3:+17423691 None:intergenic
ACGTGCCACAGTATAAGCAG+AGG 0.702190 5_3:-17420781 Msa0802770:three_prime_UTR
GATGTGGTAAGGAACTAGGA+GGG 0.704901 5_3:+17420990 None:intergenic
ATAGGATAGATATGACCTGG+TGG 0.707955 5_3:+17422491 None:intergenic
TCGACCAGTTGCCAACTCTG+GGG 0.718939 5_3:-17423366 Msa0802770:CDS
ATAATTTGGATTGCCCCAAG+CGG 0.725991 5_3:-17423398 Msa0802770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTGAAAGAA+AGG + chr5_3:17422983-17423002 None:intergenic 10.0%
!! ATTGTAAATTTGTAATATAA+TGG - chr5_3:17424122-17424141 Msa0802770:CDS 10.0%
!! AAAATTGGTAAAATTATATT+TGG + chr5_3:17425009-17425028 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTGTATC+AGG - chr5_3:17425025-17425044 Msa0802770:intron 10.0%
!! TTTATGAATATGTTAACATA+GGG + chr5_3:17421746-17421765 None:intergenic 15.0%
!! ATTTATGAATATGTTAACAT+AGG + chr5_3:17421747-17421766 None:intergenic 15.0%
!!! TTTTAATTTGATATTTATGC+TGG - chr5_3:17422081-17422100 Msa0802770:intron 15.0%
!! AAGCATATACAAAATAATAA+AGG + chr5_3:17422802-17422821 None:intergenic 15.0%
!! AAACCAACTAAATTAAAAAA+TGG + chr5_3:17423130-17423149 None:intergenic 15.0%
!! AATAAGAGAAAAATATATCA+GGG + chr5_3:17423554-17423573 None:intergenic 15.0%
!! AAATAAGAGAAAAATATATC+AGG + chr5_3:17423555-17423574 None:intergenic 15.0%
!! AAAAGAATTATATCATATCA+TGG - chr5_3:17423621-17423640 Msa0802770:intron 15.0%
!! AAAGAATTATATCATATCAT+GGG - chr5_3:17423622-17423641 Msa0802770:intron 15.0%
!!! GACTTTTTTAATTTGATTAT+TGG - chr5_3:17424309-17424328 Msa0802770:five_prime_UTR 15.0%
!! ATTTAACTCAAAATTACAAA+TGG + chr5_3:17425089-17425108 None:intergenic 15.0%
!! GCATATTAAAATAAATAGCA+AGG + chr5_3:17421324-17421343 None:intergenic 20.0%
!!! GATTGTTTTCAATATTTCAT+TGG - chr5_3:17421432-17421451 Msa0802770:intron 20.0%
!! TGTTAACATATTCATAAATG+TGG - chr5_3:17421748-17421767 Msa0802770:intron 20.0%
!! GTTAACATATTCATAAATGT+GGG - chr5_3:17421749-17421768 Msa0802770:intron 20.0%
!! TTAACATATTCATAAATGTG+GGG - chr5_3:17421750-17421769 Msa0802770:intron 20.0%
!!! ATTACGTTTTTCATTTATGT+AGG - chr5_3:17422140-17422159 Msa0802770:intron 20.0%
!! TTGAATCCAAATCTTAAAAA+AGG - chr5_3:17422386-17422405 Msa0802770:intron 20.0%
!! TGAATCCAAATCTTAAAAAA+GGG - chr5_3:17422387-17422406 Msa0802770:intron 20.0%
!!! AATGTACTTTTTTTTGTTAC+AGG - chr5_3:17422518-17422537 Msa0802770:CDS 20.0%
!! GAAACAAAATATCATTAACT+GGG - chr5_3:17422721-17422740 Msa0802770:intron 20.0%
!! ATAAAGTACATATGTTAGAT+AGG - chr5_3:17422830-17422849 Msa0802770:intron 20.0%
!!! TATGTTGGTTTTATAACAAA+CGG + chr5_3:17422959-17422978 None:intergenic 20.0%
!!! AGGTAATAAAAGTATATACT+CGG + chr5_3:17423164-17423183 None:intergenic 20.0%
!! AAAACACTATTAAATACAGA+CGG - chr5_3:17423885-17423904 Msa0802770:intron 20.0%
!! TAAATTCCATATAAGCTATT+AGG - chr5_3:17423942-17423961 Msa0802770:CDS 20.0%
!! TAAATGTTAATACTCAGTTT+CGG + chr5_3:17424066-17424085 None:intergenic 20.0%
!!! TTAATTTGATTATTGGAACA+TGG - chr5_3:17424316-17424335 Msa0802770:five_prime_UTR 20.0%
!! TAATTTGATTATTGGAACAT+GGG - chr5_3:17424317-17424336 Msa0802770:five_prime_UTR 20.0%
!! AACAAATCTTGATTATTAGA+TGG - chr5_3:17424629-17424648 Msa0802770:five_prime_UTR 20.0%
!! ACAAATCTTGATTATTAGAT+GGG - chr5_3:17424630-17424649 Msa0802770:five_prime_UTR 20.0%
!! AAAATGCTAAAATTGAAGAT+TGG + chr5_3:17424699-17424718 None:intergenic 20.0%
!!! TTCAATTTTAGCATTTTCTA+CGG - chr5_3:17424702-17424721 Msa0802770:five_prime_UTR 20.0%
!! TTGAAAAGAAAATATTTGAC+AGG + chr5_3:17424874-17424893 None:intergenic 20.0%
!!! TGAATAATTTGATGATGAAA+AGG + chr5_3:17425149-17425168 None:intergenic 20.0%
!! GGTAATGGTACATATAATAA+GGG + chr5_3:17420847-17420866 None:intergenic 25.0%
!!! TGGTAATGGTACATATAATA+AGG + chr5_3:17420848-17420867 None:intergenic 25.0%
!! AAATGTTGACATAATTTGCA+TGG + chr5_3:17421349-17421368 None:intergenic 25.0%
! TGATAACTGTAGTACTTAAT+GGG + chr5_3:17421631-17421650 None:intergenic 25.0%
! AAGATTGAAAAAATTACTGC+AGG - chr5_3:17421784-17421803 Msa0802770:intron 25.0%
! AGATTGAAAAAATTACTGCA+GGG - chr5_3:17421785-17421804 Msa0802770:intron 25.0%
! ACATAAATCTGTAGAACAAA+AGG + chr5_3:17421987-17422006 None:intergenic 25.0%
!! TTTTGTTCTACAGATTTATG+TGG - chr5_3:17421986-17422005 Msa0802770:intron 25.0%
! CTTCAAATTTGTAGAAAACA+TGG + chr5_3:17422356-17422375 None:intergenic 25.0%
! ACATCGACATATCAATATAA+GGG + chr5_3:17422490-17422509 None:intergenic 25.0%
! AACATCGACATATCAATATA+AGG + chr5_3:17422491-17422510 None:intergenic 25.0%
! TCGATCATATGATTCATATT+CGG - chr5_3:17422699-17422718 Msa0802770:intron 25.0%
! GGAAACAAAATATCATTAAC+TGG - chr5_3:17422720-17422739 Msa0802770:intron 25.0%
!!! ATGTTGGTTTTATAACAAAC+GGG + chr5_3:17422958-17422977 None:intergenic 25.0%
!!! GCACCATTTTTTAATTTAGT+TGG - chr5_3:17423124-17423143 Msa0802770:intron 25.0%
! TTCATGATAAGCAAATCATA+AGG + chr5_3:17423184-17423203 None:intergenic 25.0%
! AGACTTATGCATATTTCATA+TGG - chr5_3:17423279-17423298 Msa0802770:intron 25.0%
! ATAATAAATGTAGAGATCTG+AGG + chr5_3:17423750-17423769 None:intergenic 25.0%
! AATAGTCCTAATAGCTTATA+TGG + chr5_3:17423951-17423970 None:intergenic 25.0%
! ATAAGCTATTAGGACTATTA+AGG - chr5_3:17423952-17423971 Msa0802770:CDS 25.0%
! TATCCAAATTTCTCATTCAA+AGG + chr5_3:17423997-17424016 None:intergenic 25.0%
! TAACATTTACAAACATTTGC+TGG - chr5_3:17424077-17424096 Msa0802770:CDS 25.0%
! CAAAGAATCTATGTATCTAA+CGG + chr5_3:17424290-17424309 None:intergenic 25.0%
! TAAGAATTGTACCTGAAAAT+CGG + chr5_3:17424526-17424545 None:intergenic 25.0%
!! GTTATTTGCTTGAATTTTCA+TGG - chr5_3:17424724-17424743 Msa0802770:intron 25.0%
AGCAAGCATTTGAATGAAAA+GGG + chr5_3:17420724-17420743 None:intergenic 30.0%
AAGCAAGCATTTGAATGAAA+AGG + chr5_3:17420725-17420744 None:intergenic 30.0%
AATGGTACATATAATAAGGG+AGG + chr5_3:17420844-17420863 None:intergenic 30.0%
TGTACCATTACCAAATTCTA+AGG - chr5_3:17420855-17420874 Msa0802770:three_prime_UTR 30.0%
ATGCATAAGCTTGACATATA+TGG - chr5_3:17420896-17420915 Msa0802770:three_prime_UTR 30.0%
CATTCACACTATTTCGTATT+TGG + chr5_3:17421026-17421045 None:intergenic 30.0%
GTTCTATCAAAGACCATATT+TGG + chr5_3:17421145-17421164 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG - chr5_3:17421149-17421168 Msa0802770:three_prime_UTR 30.0%
TCTTTGATAGAACATTATGG+CGG - chr5_3:17421152-17421171 Msa0802770:three_prime_UTR 30.0%
! GTTGTTGTTGTTGACATATA+TGG - chr5_3:17421228-17421247 Msa0802770:intron 30.0%
!! TGTAAAAGTTAGTCTTCTTC+AGG - chr5_3:17421276-17421295 Msa0802770:intron 30.0%
TCAATCATAAATCTAGACTG+TGG - chr5_3:17421383-17421402 Msa0802770:intron 30.0%
TTGAAAACAATCAAACGAGA+CGG + chr5_3:17421424-17421443 None:intergenic 30.0%
AAACCAAATTTACCAGTGTA+AGG - chr5_3:17421526-17421545 Msa0802770:CDS 30.0%
GATAACTGTAGTACTTAATG+GGG + chr5_3:17421630-17421649 None:intergenic 30.0%
GTGATAACTGTAGTACTTAA+TGG + chr5_3:17421632-17421651 None:intergenic 30.0%
ATACACAAGAACCCATAAAT+CGG + chr5_3:17421718-17421737 None:intergenic 30.0%
!!! CTCTTCCCTTTTTTAAGATT+TGG + chr5_3:17422395-17422414 None:intergenic 30.0%
CACACAAGATACTATACAAA+GGG + chr5_3:17422442-17422461 None:intergenic 30.0%
ACACACAAGATACTATACAA+AGG + chr5_3:17422443-17422462 None:intergenic 30.0%
TGTGTGTAATAGTTGTTGAT+TGG - chr5_3:17422456-17422475 Msa0802770:CDS 30.0%
!!! ACTTTTTTTTGTTACAGGAG+TGG - chr5_3:17422523-17422542 Msa0802770:CDS 30.0%
TTACAAGAAAGTGAACTTAC+CGG + chr5_3:17422619-17422638 None:intergenic 30.0%
GTACATATGTTAGATAGGAT+TGG - chr5_3:17422835-17422854 Msa0802770:intron 30.0%
ACTGGTTATGCTTAAATAGA+GGG + chr5_3:17422873-17422892 None:intergenic 30.0%
AACTGGTTATGCTTAAATAG+AGG + chr5_3:17422874-17422893 None:intergenic 30.0%
!! TGACCTTTTTCACTGAAAAT+AGG - chr5_3:17422913-17422932 Msa0802770:intron 30.0%
!! TTTTGAAAGAAAGGCTATGT+TGG + chr5_3:17422974-17422993 None:intergenic 30.0%
AGTACATGGATAATTCATCA+CGG - chr5_3:17423035-17423054 Msa0802770:intron 30.0%
!! TGATTTGCTTATCATGAAAG+CGG - chr5_3:17423186-17423205 Msa0802770:intron 30.0%
ATGGAAATTCATAATCAGCA+TGG + chr5_3:17423364-17423383 None:intergenic 30.0%
TTTCAACCTGCAAAATTACA+CGG + chr5_3:17423587-17423606 None:intergenic 30.0%
! TTGCAGGTTGAAAAAGAAAT+TGG - chr5_3:17423594-17423613 Msa0802770:intron 30.0%
! TGCAGGTTGAAAAAGAAATT+GGG - chr5_3:17423595-17423614 Msa0802770:intron 30.0%
ATTATATCATATCATGGGAC+TGG - chr5_3:17423627-17423646 Msa0802770:intron 30.0%
TTCTTGTGAAAATCCTGAAA+AGG - chr5_3:17423692-17423711 Msa0802770:intron 30.0%
TATCCTTGTAGTAAGAAGTA+TGG - chr5_3:17423826-17423845 Msa0802770:intron 30.0%
!!! TTTGGTACTGTTCTTTTTTG+TGG + chr5_3:17424022-17424041 None:intergenic 30.0%
ACATAGATCATTAACTACAG+AGG + chr5_3:17424153-17424172 None:intergenic 30.0%
!!! TTTTAAGTTCAGAACGATGA+GGG + chr5_3:17424233-17424252 None:intergenic 30.0%
!!! TTTTTAAGTTCAGAACGATG+AGG + chr5_3:17424234-17424253 None:intergenic 30.0%
AACGGATAATAAATCATGTG+TGG + chr5_3:17424272-17424291 None:intergenic 30.0%
ATTAGTCACAGAATCATACA+AGG + chr5_3:17424380-17424399 None:intergenic 30.0%
TTCAGGTACAATTCTTACTT+TGG - chr5_3:17424529-17424548 Msa0802770:five_prime_UTR 30.0%
TTGAAAACGTTTCTCATTGA+TGG - chr5_3:17424602-17424621 Msa0802770:five_prime_UTR 30.0%
! TTTTGTAGATGCAAGTTACA+AGG - chr5_3:17424772-17424791 Msa0802770:intron 30.0%
CTGAAACAGATTACTGATAA+TGG + chr5_3:17424913-17424932 None:intergenic 30.0%
TATCAGTAATCTGTTTCAGA+AGG - chr5_3:17424914-17424933 Msa0802770:intron 30.0%
AATTGGATGATGATTCACAT+TGG - chr5_3:17425202-17425221 Msa0802770:five_prime_UTR 30.0%
GCAAGCATTTGAATGAAAAG+GGG + chr5_3:17420723-17420742 None:intergenic 35.0%
!! AATGCTTGCTTTTACGTTGT+AGG - chr5_3:17420734-17420753 Msa0802770:three_prime_UTR 35.0%
TACTATCTTCGCTCTTTCTA+GGG + chr5_3:17420804-17420823 None:intergenic 35.0%
TTACTATCTTCGCTCTTTCT+AGG + chr5_3:17420805-17420824 None:intergenic 35.0%
CCAACCTTAGAATTTGGTAA+TGG + chr5_3:17420862-17420881 None:intergenic 35.0%
!! CCATTACCAAATTCTAAGGT+TGG - chr5_3:17420859-17420878 Msa0802770:three_prime_UTR 35.0%
CAGATACCAACCTTAGAATT+TGG + chr5_3:17420868-17420887 None:intergenic 35.0%
TATGGAATTTAATCCTGCCA+AGG - chr5_3:17420914-17420933 Msa0802770:three_prime_UTR 35.0%
! GATTCGACAAAGTTTTACGT+TGG + chr5_3:17420990-17421009 None:intergenic 35.0%
TTTGTCGAATCTCTATGACA+TGG - chr5_3:17420999-17421018 Msa0802770:three_prime_UTR 35.0%
TACGAAATAGTGTGAATGCT+AGG - chr5_3:17421028-17421047 Msa0802770:three_prime_UTR 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr5_3:17421129-17421148 Msa0802770:three_prime_UTR 35.0%
!! AAAAGTTAGTCTTCTTCAGG+TGG - chr5_3:17421279-17421298 Msa0802770:intron 35.0%
TGAAAACAATCAAACGAGAC+GGG + chr5_3:17421423-17421442 None:intergenic 35.0%
GTCTTCAGATCAGTTTCATT+AGG - chr5_3:17421454-17421473 Msa0802770:three_prime_UTR 35.0%
CGCAGAATTGCAATTAAGTT+CGG + chr5_3:17421490-17421509 None:intergenic 35.0%
GAACCTTACACTGGTAAATT+TGG + chr5_3:17421532-17421551 None:intergenic 35.0%
AATTCCAGGCAAATTTGTGA+CGG + chr5_3:17421558-17421577 None:intergenic 35.0%
!! ATCTAGCATTGACAAATTCC+AGG + chr5_3:17421572-17421591 None:intergenic 35.0%
CAAGGTTGACATTTCATGAA+AGG + chr5_3:17421692-17421711 None:intergenic 35.0%
TCAACCTTGATTCCGATTTA+TGG - chr5_3:17421703-17421722 Msa0802770:intron 35.0%
CAACCTTGATTCCGATTTAT+GGG - chr5_3:17421704-17421723 Msa0802770:intron 35.0%
GATTCAAAGTCAACCTCATT+AGG + chr5_3:17422114-17422133 None:intergenic 35.0%
CGATGCATTGAAGTCTTAAT+TGG + chr5_3:17422325-17422344 None:intergenic 35.0%
GGAGTGGATCACAAATAATT+TGG - chr5_3:17422539-17422558 Msa0802770:CDS 35.0%
! CATATGATCGATCTAAGATG+TGG + chr5_3:17422690-17422709 None:intergenic 35.0%
CTTAAATAGAGGGTTAGACA+TGG + chr5_3:17422863-17422882 None:intergenic 35.0%
! CCACCTATTTTCAGTGAAAA+AGG + chr5_3:17422919-17422938 None:intergenic 35.0%
!! CCTTTTTCACTGAAAATAGG+TGG - chr5_3:17422916-17422935 Msa0802770:intron 35.0%
TCTACTGTATGTATGAGACA+AGG + chr5_3:17423011-17423030 None:intergenic 35.0%
ATACAGTAGAGTCAAGTACA+TGG - chr5_3:17423021-17423040 Msa0802770:intron 35.0%
ATGGATAATTCATCACGGAT+GGG - chr5_3:17423040-17423059 Msa0802770:intron 35.0%
GCATGGAAATATCACAGAAT+TGG + chr5_3:17423347-17423366 None:intergenic 35.0%
TGAATTTCCATGCTTATACG+AGG - chr5_3:17423373-17423392 Msa0802770:CDS 35.0%
TCCACTGAAGAAGAATCAAA+GGG + chr5_3:17423409-17423428 None:intergenic 35.0%
! GCAGGTTGAAAAAGAAATTG+GGG - chr5_3:17423596-17423615 Msa0802770:intron 35.0%
GTGAAAATCCTGAAAAGGTA+AGG - chr5_3:17423697-17423716 Msa0802770:intron 35.0%
! CATATTCTCCTTACCTTTTC+AGG + chr5_3:17423708-17423727 None:intergenic 35.0%
TAAGTCACCTATTGTCATTC+TGG - chr5_3:17423803-17423822 Msa0802770:intron 35.0%
AAGGATACCAGAATGACAAT+AGG + chr5_3:17423813-17423832 None:intergenic 35.0%
AGCTATTAGGACTATTAAGG+AGG - chr5_3:17423955-17423974 Msa0802770:CDS 35.0%
GCTATTAGGACTATTAAGGA+GGG - chr5_3:17423956-17423975 Msa0802770:intron 35.0%
GTGCCTTTGAATGAGAAATT+TGG - chr5_3:17423991-17424010 Msa0802770:intron 35.0%
TAATACTCAGTTTCGGTAGA+GGG + chr5_3:17424059-17424078 None:intergenic 35.0%
TTAATACTCAGTTTCGGTAG+AGG + chr5_3:17424060-17424079 None:intergenic 35.0%
AGATCATTAACTACAGAGGT+GGG + chr5_3:17424149-17424168 None:intergenic 35.0%
TAGATCATTAACTACAGAGG+TGG + chr5_3:17424150-17424169 None:intergenic 35.0%
GACTAATCAATATGATGTGC+TGG - chr5_3:17424393-17424412 Msa0802770:five_prime_UTR 35.0%
!!! TACACTTTTCACCGATTTTC+AGG - chr5_3:17424512-17424531 Msa0802770:five_prime_UTR 35.0%
AATCTCTGATGTGAATCAGT+TGG + chr5_3:17424813-17424832 None:intergenic 35.0%
TTTGGTCTCTTATCAGTCAA+TGG + chr5_3:17424991-17425010 None:intergenic 35.0%
ACTATCTTCGCTCTTTCTAG+GGG + chr5_3:17420803-17420822 None:intergenic 40.0%
AAAATGGAGAGGGTTGTGTT+AGG - chr5_3:17420955-17420974 Msa0802770:three_prime_UTR 40.0%
AGTACAGTGTCAAATGAGCA+AGG - chr5_3:17421084-17421103 Msa0802770:three_prime_UTR 40.0%
GTACAGTGTCAAATGAGCAA+GGG - chr5_3:17421085-17421104 Msa0802770:three_prime_UTR 40.0%
ATCCAACTCATTGACCTCTA+CGG + chr5_3:17421122-17421141 None:intergenic 40.0%
AATCAAACGAGACGGGATTT+CGG + chr5_3:17421416-17421435 None:intergenic 40.0%
ATTCCAGGCAAATTTGTGAC+GGG + chr5_3:17421557-17421576 None:intergenic 40.0%
GAACCCATAAATCGGAATCA+AGG + chr5_3:17421710-17421729 None:intergenic 40.0%
AGCAGCAATGCAATAATAGC+TGG + chr5_3:17421854-17421873 None:intergenic 40.0%
TCCACATATTGCTGAGAACT+TGG - chr5_3:17421886-17421905 Msa0802770:intron 40.0%
ACCAAGTTCTCAGCAATATG+TGG + chr5_3:17421890-17421909 None:intergenic 40.0%
GTTCTACAGATTTATGTGGC+AGG - chr5_3:17421990-17422009 Msa0802770:intron 40.0%
ATGAACCTGCCAATACTGAA+GGG + chr5_3:17422047-17422066 None:intergenic 40.0%
AATGAACCTGCCAATACTGA+AGG + chr5_3:17422048-17422067 None:intergenic 40.0%
TGCTGGCATATTTCCTAATG+AGG - chr5_3:17422098-17422117 Msa0802770:intron 40.0%
! CTTTTCATCTCTACAAGTGC+TGG + chr5_3:17422208-17422227 None:intergenic 40.0%
AGCAAATACACGAAGTCTGA+AGG - chr5_3:17422231-17422250 Msa0802770:intron 40.0%
TACACGAAGTCTGAAGGAAA+TGG - chr5_3:17422237-17422256 Msa0802770:intron 40.0%
ATGCACATACCTTAAAAGCG+TGG + chr5_3:17422263-17422282 None:intergenic 40.0%
ATAATTTGGATTGCCCCAAG+CGG - chr5_3:17422553-17422572 Msa0802770:CDS 40.0%
GCATAACCAGTTGTTTGCAA+AGG - chr5_3:17422882-17422901 Msa0802770:intron 40.0%
AAGCAACCTTTGCAAACAAC+TGG + chr5_3:17422891-17422910 None:intergenic 40.0%
CATGGATAATTCATCACGGA+TGG - chr5_3:17423039-17423058 Msa0802770:intron 40.0%
CTAAGTGCATAACATCCTCT+CGG - chr5_3:17423311-17423330 Msa0802770:CDS 40.0%
ACCCTTTGATTCTTCTTCAG+TGG - chr5_3:17423405-17423424 Msa0802770:CDS 40.0%
GTCCACTGAAGAAGAATCAA+AGG + chr5_3:17423410-17423429 None:intergenic 40.0%
ATAGGATAGATATGACCTGG+TGG + chr5_3:17423463-17423482 None:intergenic 40.0%
ACCAGGTCATATCTATCCTA+TGG - chr5_3:17423462-17423481 Msa0802770:intron 40.0%
TCATGGCACAATATTGCCAT+AGG + chr5_3:17423481-17423500 None:intergenic 40.0%
AAGGAACACCATACCTTAAG+TGG + chr5_3:17423517-17423536 None:intergenic 40.0%
! TTGACACCGTGTAATTTTGC+AGG - chr5_3:17423578-17423597 Msa0802770:intron 40.0%
GTGTCGGAAAAGCTTATTTC+TGG + chr5_3:17423666-17423685 None:intergenic 40.0%
! AGGATTTTCACAAGAAGCAG+TGG + chr5_3:17423688-17423707 None:intergenic 40.0%
CAGCCATACTTCTTACTACA+AGG + chr5_3:17423832-17423851 None:intergenic 40.0%
! TTCTCATTCAAAGGCACACA+GGG + chr5_3:17423988-17424007 None:intergenic 40.0%
! TTTCTCATTCAAAGGCACAC+AGG + chr5_3:17423989-17424008 None:intergenic 40.0%
CAGTACCAAATGTGAACCTT+TGG - chr5_3:17424032-17424051 Msa0802770:intron 40.0%
ACCCAAGGATACTGAATACT+GGG + chr5_3:17424183-17424202 None:intergenic 40.0%
AAGTTTGAGCATATGACCCA+AGG + chr5_3:17424198-17424217 None:intergenic 40.0%
ATTGGAACATGGGTTCTGTA+TGG - chr5_3:17424327-17424346 Msa0802770:five_prime_UTR 40.0%
!!! CAATCCTTTTTTGCCGTGTA+TGG + chr5_3:17424425-17424444 None:intergenic 40.0%
CATACACGGCAAAAAAGGAT+TGG - chr5_3:17424423-17424442 Msa0802770:five_prime_UTR 40.0%
TCAAATCCGAACTACTTCCA+TGG + chr5_3:17424481-17424500 None:intergenic 40.0%
! GCTTGAATTTTCATGGCTGA+AGG - chr5_3:17424731-17424750 Msa0802770:intron 40.0%
! ACTGTCTTTTACTGCATCCA+AGG - chr5_3:17424833-17424852 Msa0802770:intron 40.0%
! CTGTCTTTTACTGCATCCAA+GGG - chr5_3:17424834-17424853 Msa0802770:intron 40.0%
TCTCTTATCAGTCAATGGAC+TGG + chr5_3:17424986-17425005 None:intergenic 40.0%
TTTGACCTCTGCTTATACTG+TGG + chr5_3:17425178-17425197 None:intergenic 40.0%
AGCAGAGGTCAAAATGCAAT+TGG - chr5_3:17425185-17425204 Msa0802770:five_prime_UTR 40.0%
! TATCTTCGCTCTTTCTAGGG+GGG + chr5_3:17420801-17420820 None:intergenic 45.0%
CTATCTTCGCTCTTTCTAGG+GGG + chr5_3:17420802-17420821 None:intergenic 45.0%
GAATTTAATCCTGCCAAGGC+CGG - chr5_3:17420918-17420937 Msa0802770:three_prime_UTR 45.0%
! ACAACCCTCTCCATTTTACC+CGG + chr5_3:17420952-17420971 None:intergenic 45.0%
!! AAGTTTTACGTTGGCTGTCG+AGG + chr5_3:17420981-17421000 None:intergenic 45.0%
AACGCCTTATCCCACTAAGT+GGG + chr5_3:17421199-17421218 None:intergenic 45.0%
!! AGTTAGTCTTCTTCAGGTGG+TGG - chr5_3:17421282-17421301 Msa0802770:intron 45.0%
TAGCTGGATCAGCTTCACTT+TGG + chr5_3:17421838-17421857 None:intergenic 45.0%
ATACTGAAGGGCTTGCATAG+AGG + chr5_3:17422035-17422054 None:intergenic 45.0%
CTATGCAAGCCCTTCAGTAT+TGG - chr5_3:17422035-17422054 Msa0802770:intron 45.0%
! AGGAAATGGCCACGCTTTTA+AGG - chr5_3:17422251-17422270 Msa0802770:intron 45.0%
ATAATTCATCACGGATGGGC+TGG - chr5_3:17423044-17423063 Msa0802770:intron 45.0%
CTACAAATGAAGTCCCGGTT+TGG - chr5_3:17423076-17423095 Msa0802770:intron 45.0%
ACTCCACATTTGAGCCAAAC+CGG + chr5_3:17423093-17423112 None:intergenic 45.0%
CGAGAGGATGTTATGCACTT+AGG + chr5_3:17423313-17423332 None:intergenic 45.0%
ATTGGTTGTATTGCACCGAG+AGG + chr5_3:17423329-17423348 None:intergenic 45.0%
CTGAATGCCTCGTATAAGCA+TGG + chr5_3:17423383-17423402 None:intergenic 45.0%
! CATGCTTATACGAGGCATTC+AGG - chr5_3:17423381-17423400 Msa0802770:CDS 45.0%
CTTCAGTGGACAATATGCGA+AGG - chr5_3:17423419-17423438 Msa0802770:intron 45.0%
GCCATAGGATAGATATGACC+TGG + chr5_3:17423466-17423485 None:intergenic 45.0%
CATAATGCCTCCTCCACTTA+AGG - chr5_3:17423501-17423520 Msa0802770:intron 45.0%
GAACACCATACCTTAAGTGG+AGG + chr5_3:17423514-17423533 None:intergenic 45.0%
! GTGTTCCTTCCTTTGAGAGT+TGG - chr5_3:17423528-17423547 Msa0802770:intron 45.0%
ATATCAGGGCCAACTCTCAA+AGG + chr5_3:17423540-17423559 None:intergenic 45.0%
TTCACAAGAAGCAGTGGTGT+CGG + chr5_3:17423682-17423701 None:intergenic 45.0%
TCGAGCTACGTAGCATTCTT+AGG + chr5_3:17423855-17423874 None:intergenic 45.0%
! TCTCATTCAAAGGCACACAG+GGG + chr5_3:17423987-17424006 None:intergenic 45.0%
AGGGTCCAAAGGTTCACATT+TGG + chr5_3:17424040-17424059 None:intergenic 45.0%
AGCCCAGTATTCAGTATCCT+TGG - chr5_3:17424178-17424197 Msa0802770:CDS 45.0%
GCCCAGTATTCAGTATCCTT+GGG - chr5_3:17424179-17424198 Msa0802770:CDS 45.0%
GACCCAAGGATACTGAATAC+TGG + chr5_3:17424184-17424203 None:intergenic 45.0%
TCTGCCATACACGGCAAAAA+AGG - chr5_3:17424418-17424437 Msa0802770:five_prime_UTR 45.0%
ACAGACGCGTCTTGTAGATT+AGG - chr5_3:17424578-17424597 Msa0802770:five_prime_UTR 45.0%
GATGTGGTAAGGAACTAGGA+GGG + chr5_3:17424964-17424983 None:intergenic 45.0%
ACTGGATGTGGTAAGGAACT+AGG + chr5_3:17424968-17424987 None:intergenic 45.0%
!! TCAATGGACTGGATGTGGTA+AGG + chr5_3:17424975-17424994 None:intergenic 45.0%
!! ATCAGTCAATGGACTGGATG+TGG + chr5_3:17424980-17424999 None:intergenic 45.0%
!! ATACAAAAAAAAAAAAAAAT+TGG + chr5_3:17425024-17425043 None:intergenic 5.0%
! TCTCCATTTTACCCGGGCTT+GGG + chr5_3:17420945-17420964 None:intergenic 50.0%
AAGCCCGGGTAAAATGGAGA+GGG - chr5_3:17420945-17420964 Msa0802770:three_prime_UTR 50.0%
! CAACCCTCTCCATTTTACCC+GGG + chr5_3:17420951-17420970 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_3:17421194-17421213 None:intergenic 50.0%
ACGCCTTATCCCACTAAGTG+GGG + chr5_3:17421198-17421217 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG + chr5_3:17421200-17421219 None:intergenic 50.0%
TGACGGGAAGAACCTTACAC+TGG + chr5_3:17421541-17421560 None:intergenic 50.0%
CTTCCCGTCACAAATTTGCC+TGG - chr5_3:17421551-17421570 Msa0802770:CDS 50.0%
CTGGATCAGCTTCACTTTGG+TGG + chr5_3:17421835-17421854 None:intergenic 50.0%
GAAGGGCTTGCATAGAGGAT+CGG + chr5_3:17422030-17422049 None:intergenic 50.0%
ATCGACCAGTTGCCAACTCT+GGG - chr5_3:17422584-17422603 Msa0802770:intron 50.0%
!! AGTTGCCAACTCTGGGGTAT+GGG - chr5_3:17422591-17422610 Msa0802770:intron 50.0%
AACATCATGAGCTCGACTGC+TGG + chr5_3:17422769-17422788 None:intergenic 50.0%
CTCCACATTTGAGCCAAACC+GGG + chr5_3:17423092-17423111 None:intergenic 50.0%
CGAAGGCTTGTCGATCATTC+AGG - chr5_3:17423436-17423455 Msa0802770:intron 50.0%
!! GTGGAGGAGGCATTATGTCA+TGG + chr5_3:17423498-17423517 None:intergenic 50.0%
TGCCTCCTCCACTTAAGGTA+TGG - chr5_3:17423506-17423525 Msa0802770:intron 50.0%
CACCATACCTTAAGTGGAGG+AGG + chr5_3:17423511-17423530 None:intergenic 50.0%
AGTTTCGGTAGAGGGTCCAA+AGG + chr5_3:17424051-17424070 None:intergenic 50.0%
ACATGGGTTCTGTATGGTGC+AGG - chr5_3:17424333-17424352 Msa0802770:five_prime_UTR 50.0%
TCGCAGCCATGGAAGTAGTT+CGG - chr5_3:17424472-17424491 Msa0802770:five_prime_UTR 50.0%
GGAAATTTCCATCGAGCCCT+TGG + chr5_3:17424853-17424872 None:intergenic 50.0%
GGATGTGGTAAGGAACTAGG+AGG + chr5_3:17424965-17424984 None:intergenic 50.0%
ACGTGCCACAGTATAAGCAG+AGG - chr5_3:17425170-17425189 Msa0802770:five_prime_UTR 50.0%
! CGCTCTTTCTAGGGGGGAAA+AGG + chr5_3:17420795-17420814 None:intergenic 55.0%
! ATTTTACCCGGGCTTGGGAC+CGG + chr5_3:17420940-17420959 None:intergenic 55.0%
! CTCTCCATTTTACCCGGGCT+TGG + chr5_3:17420946-17420965 None:intergenic 55.0%
CAAGCCCGGGTAAAATGGAG+AGG - chr5_3:17420944-17420963 Msa0802770:three_prime_UTR 55.0%
GTGAATGCTAGGTCGTTGCC+CGG - chr5_3:17421039-17421058 Msa0802770:three_prime_UTR 55.0%
CGCCGTAGAGGTCAATGAGT+TGG - chr5_3:17421117-17421136 Msa0802770:three_prime_UTR 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr5_3:17421186-17421205 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_3:17421185-17421204 Msa0802770:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_3:17421186-17421205 Msa0802770:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_3:17421192-17421211 Msa0802770:intron 55.0%
!! GCAAGCCCTTCAGTATTGGC+AGG - chr5_3:17422039-17422058 Msa0802770:intron 55.0%
ATTTGGATTGCCCCAAGCGG+TGG - chr5_3:17422556-17422575 Msa0802770:CDS 55.0%
GATCGACCAGTTGCCAACTC+TGG - chr5_3:17422583-17422602 Msa0802770:intron 55.0%
TCGACCAGTTGCCAACTCTG+GGG - chr5_3:17422585-17422604 Msa0802770:intron 55.0%
CATACCCCAGAGTTGGCAAC+TGG + chr5_3:17422592-17422611 None:intergenic 55.0%
!! CAGTTGCCAACTCTGGGGTA+TGG - chr5_3:17422590-17422609 Msa0802770:intron 55.0%
!! TCATCACGGATGGGCTGGTT+AGG - chr5_3:17423049-17423068 Msa0802770:intron 55.0%
!! CATCACGGATGGGCTGGTTA+GGG - chr5_3:17423050-17423069 Msa0802770:intron 55.0%
!! ATCACGGATGGGCTGGTTAG+GGG - chr5_3:17423051-17423070 Msa0802770:intron 55.0%
GGGGGCTACAAATGAAGTCC+CGG - chr5_3:17423071-17423090 Msa0802770:intron 55.0%
!! GTCCCGGTTTGGCTCAAATG+TGG - chr5_3:17423087-17423106 Msa0802770:intron 55.0%
GTCGATCATTCAGGTCCACC+AGG - chr5_3:17423445-17423464 Msa0802770:intron 55.0%
CAGGGCCAACTCTCAAAGGA+AGG + chr5_3:17423536-17423555 None:intergenic 55.0%
! CATTCAAAGGCACACAGGGG+AGG + chr5_3:17423984-17424003 None:intergenic 55.0%
GTGCTGGAGTCTGCCATACA+CGG - chr5_3:17424409-17424428 Msa0802770:five_prime_UTR 55.0%
TGGCTGCGACAAGGAAACTG+CGG + chr5_3:17424461-17424480 None:intergenic 55.0%
CAGTTTCCTTGTCGCAGCCA+TGG - chr5_3:17424461-17424480 Msa0802770:five_prime_UTR 55.0%
CTACTTCCATGGCTGCGACA+AGG + chr5_3:17424470-17424489 None:intergenic 55.0%
TACTGCATCCAAGGGCTCGA+TGG - chr5_3:17424842-17424861 Msa0802770:intron 55.0%
GGTCCCAAGCCCGGGTAAAA+TGG - chr5_3:17420939-17420958 Msa0802770:three_prime_UTR 60.0%
CCATACAGCGCGTTGCTTCC+GGG + chr5_3:17421060-17421079 None:intergenic 60.0%
GCCATACAGCGCGTTGCTTC+CGG + chr5_3:17421061-17421080 None:intergenic 60.0%
TGACCTCTACGGCGATGCAG+CGG + chr5_3:17421111-17421130 None:intergenic 60.0%
GATTGCCCCAAGCGGTGGTA+GGG - chr5_3:17422561-17422580 Msa0802770:intron 60.0%
TCGATCCCTACCACCGCTTG+GGG + chr5_3:17422569-17422588 None:intergenic 60.0%
GTCGATCCCTACCACCGCTT+GGG + chr5_3:17422570-17422589 None:intergenic 60.0%
!! CAACTCTGGGGTATGGGCAC+CGG - chr5_3:17422597-17422616 Msa0802770:intron 60.0%
CGACTGCTGGAGTACGCTTC+TGG + chr5_3:17422756-17422775 None:intergenic 60.0%
!! TCACGGATGGGCTGGTTAGG+GGG - chr5_3:17423052-17423071 Msa0802770:intron 60.0%
GGCTGCGACAAGGAAACTGC+GGG + chr5_3:17424460-17424479 None:intergenic 60.0%
CCCGGAAGCAACGCGCTGTA+TGG - chr5_3:17421057-17421076 Msa0802770:three_prime_UTR 65.0%
GGATTGCCCCAAGCGGTGGT+AGG - chr5_3:17422560-17422579 Msa0802770:intron 65.0%
GGTCGATCCCTACCACCGCT+TGG + chr5_3:17422571-17422590 None:intergenic 65.0%
CGGTGCCCATACCCCAGAGT+TGG + chr5_3:17422599-17422618 None:intergenic 65.0%
!! CACGGATGGGCTGGTTAGGG+GGG - chr5_3:17423053-17423072 Msa0802770:intron 65.0%
GGCTTGGGACCGGCCTTGGC+AGG + chr5_3:17420930-17420949 None:intergenic 75.0%
GCCAAGGCCGGTCCCAAGCC+CGG - chr5_3:17420930-17420949 Msa0802770:three_prime_UTR 75.0%
CCAAGGCCGGTCCCAAGCCC+GGG - chr5_3:17420931-17420950 Msa0802770:three_prime_UTR 75.0%
GGGCCGCTGCATCGCCGTAG+AGG - chr5_3:17421105-17421124 Msa0802770:three_prime_UTR 75.0%
! CCCGGGCTTGGGACCGGCCT+TGG + chr5_3:17420934-17420953 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 17420715 17425258 17420715 ID=Msa0802770;Name=Msa0802770
chr5_3 mRNA 17420715 17425258 17420715 ID=Msa0802770-mRNA-1;Parent=Msa0802770;Name=Msa0802770-mRNA-1;_AED=0.21;_eAED=0.21;_QI=675|0.87|0.77|1|0.62|0.44|9|523|288
chr5_3 exon 17420715 17421193 17420715 ID=Msa0802770-mRNA-1:exon:7274;Parent=Msa0802770-mRNA-1
chr5_3 exon 17421440 17421618 17421440 ID=Msa0802770-mRNA-1:exon:7273;Parent=Msa0802770-mRNA-1
chr5_3 exon 17422260 17422373 17422260 ID=Msa0802770-mRNA-1:exon:7272;Parent=Msa0802770-mRNA-1
chr5_3 exon 17422451 17422578 17422451 ID=Msa0802770-mRNA-1:exon:7271;Parent=Msa0802770-mRNA-1
chr5_3 exon 17423303 17423433 17423303 ID=Msa0802770-mRNA-1:exon:7270;Parent=Msa0802770-mRNA-1
chr5_3 exon 17423701 17423811 17423701 ID=Msa0802770-mRNA-1:exon:7269;Parent=Msa0802770-mRNA-1
chr5_3 exon 17423913 17423974 17423913 ID=Msa0802770-mRNA-1:exon:7268;Parent=Msa0802770-mRNA-1
chr5_3 exon 17424066 17424728 17424066 ID=Msa0802770-mRNA-1:exon:7267;Parent=Msa0802770-mRNA-1
chr5_3 exon 17425061 17425258 17425061 ID=Msa0802770-mRNA-1:exon:7266;Parent=Msa0802770-mRNA-1
chr5_3 five_prime_UTR 17425061 17425258 17425061 ID=Msa0802770-mRNA-1:five_prime_utr;Parent=Msa0802770-mRNA-1
chr5_3 five_prime_UTR 17424252 17424728 17424252 ID=Msa0802770-mRNA-1:five_prime_utr;Parent=Msa0802770-mRNA-1
chr5_3 CDS 17424066 17424251 17424066 ID=Msa0802770-mRNA-1:cds;Parent=Msa0802770-mRNA-1
chr5_3 CDS 17423913 17423974 17423913 ID=Msa0802770-mRNA-1:cds;Parent=Msa0802770-mRNA-1
chr5_3 CDS 17423701 17423811 17423701 ID=Msa0802770-mRNA-1:cds;Parent=Msa0802770-mRNA-1
chr5_3 CDS 17423303 17423433 17423303 ID=Msa0802770-mRNA-1:cds;Parent=Msa0802770-mRNA-1
chr5_3 CDS 17422451 17422578 17422451 ID=Msa0802770-mRNA-1:cds;Parent=Msa0802770-mRNA-1
chr5_3 CDS 17422260 17422373 17422260 ID=Msa0802770-mRNA-1:cds;Parent=Msa0802770-mRNA-1
chr5_3 CDS 17421484 17421618 17421484 ID=Msa0802770-mRNA-1:cds;Parent=Msa0802770-mRNA-1
chr5_3 three_prime_UTR 17421440 17421483 17421440 ID=Msa0802770-mRNA-1:three_prime_utr;Parent=Msa0802770-mRNA-1
chr5_3 three_prime_UTR 17420715 17421193 17420715 ID=Msa0802770-mRNA-1:three_prime_utr;Parent=Msa0802770-mRNA-1
Gene Sequence

>Msa0802770

ATGGGTTCTTGTGTATATTTACCCTATGTTAACATATTCATAAATGTGGGGTTAATGTTTGAAAGATTGAAAAAATTACTGCAGGGACACAATATTATCTTGATGTCAAACCACCAAAGTGAAGCTGATCCAGCTATTATTGCATTGCTGCTTGAAATGCGACTTCCACATATTGCTGAGAACTTGATTTATGTGGCAGGAGATAGAGTTATAACCGATCCTCTATGCAAGCCCTTCAGTATTGGCAGGAATCTGATCTGTGTTTATTCAAAAAAGCACATGCTTGATGATCCAGCACTTGTAGAGATGAAAAGAAAAGCAAATACACGAAGTCTGAAGGAAATGGCCACGCTTTTAAGGAGTGGATCACAAATAATTTGGATTGCCCCAAGCGGTGGTAGGGATCGACCAGTTGCCAACTCTGGGGTATGGGCACCGGTAAGTTCACTTTCTTGTAAAAGTAAAAATGTAGAAGTGCATTATAGTCTCAGCATTCAGGCACCCTTTGATTCTTCTTCAGTGGACAATATGCGAAGGCTTGTCGATCATTCAGGTCCACCAGGTCATATCTATCCTATGGCAATATTGTGCCATGACATAATGCCTCCTCCACTTAAGGTTGAAAAAGAAATTGGGGAGAAAAGAATTATATCATATCATGGGACTGGCATATCACTTGCTCCAGAAATAAGCTTTTCCGACACCACTGCTTCTTGTGAAAATCCTGAAAAGGCTAAAGAAACATACTCAAAAGCCTTGTATGATTCTGTGACTAATCAATATGATGTGCTGGAGTCTGCCATACACGGCAAAAAAGGATTGGAAGCATCAACTCCCGCAGTTTCCTTGTCGCAGCCATGGAAGTAG
Protein sequence

>Msa0802770

MGSCVYLPYVNIFINVGLMFERLKKLLQGHNIILMSNHQSEADPAIIALLLEMRLPHIAENLIYVAGDRVITDPLCKPFSIGRNLICVYSKKHMLDDPALVEMKRKANTRSLKEMATLLRSGSQIIWIAPSGGRDRPVANSGVWAPVSSLSCKSKNVEVHYSLSIQAPFDSSSVDNMRRLVDHSGPPGHIYPMAILCHDIMPPPLKVEKEIGEKRIISYHGTGISLAPEISFSDTTASCENPEKAKETYSKALYDSVTNQYDVLESAIHGKKGLEASTPAVSLSQPWK*