Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720160 | XP_024640259.1 | 96.099 | 282 | 10 | 1 | 1 | 281 | 1 | 282 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720160 | sp|Q9LFD5|BPA1_ARATH | 62.393 | 234 | 80 | 4 | 3 | 236 | 5 | 230 | 1.90e-96 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720160 | A0A396HQQ7 | 96.099 | 282 | 10 | 1 | 1 | 281 | 1 | 282 | 0.0 | 537 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0720160 | Msa0769940 | 0.937124 | 5.762158e-98 | -8.615850e-47 |
| Msa0720160 | Msa0802980 | 0.908468 | 1.654943e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720160 | MtrunA17_Chr5g0410831 | 96.099 | 282 | 10 | 1 | 1 | 281 | 1 | 282 | 0.0 | 537 |
| Msa0720160 | MtrunA17_Chr8g0366351 | 79.715 | 281 | 55 | 1 | 1 | 281 | 1 | 279 | 8.65e-159 | 442 |
| Msa0720160 | MtrunA17_Chr5g0410821 | 95.455 | 154 | 7 | 0 | 113 | 266 | 1 | 154 | 6.61e-100 | 289 |
| Msa0720160 | MtrunA17_Chr1g0161591 | 56.977 | 258 | 99 | 3 | 3 | 253 | 31 | 283 | 1.41e-94 | 281 |
| Msa0720160 | MtrunA17_Chr8g0392141 | 56.274 | 263 | 104 | 2 | 3 | 258 | 31 | 289 | 3.03e-94 | 280 |
| Msa0720160 | MtrunA17_Chr7g0253621 | 45.276 | 254 | 121 | 3 | 1 | 238 | 1 | 252 | 6.03e-64 | 201 |
| Msa0720160 | MtrunA17_Chr5g0416421 | 39.419 | 241 | 125 | 3 | 6 | 230 | 10 | 245 | 3.10e-47 | 158 |
| Msa0720160 | MtrunA17_Chr7g0217131 | 33.077 | 260 | 126 | 8 | 5 | 230 | 7 | 252 | 3.34e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720160 | AT4G17720.1 | 68.773 | 269 | 81 | 2 | 1 | 266 | 1 | 269 | 1.15e-125 | 360 |
| Msa0720160 | AT5G46870.2 | 65.000 | 280 | 89 | 3 | 1 | 271 | 1 | 280 | 4.72e-114 | 330 |
| Msa0720160 | AT5G46870.1 | 65.000 | 280 | 89 | 3 | 1 | 271 | 1 | 280 | 4.72e-114 | 330 |
| Msa0720160 | AT5G16840.2 | 63.248 | 234 | 79 | 4 | 3 | 236 | 5 | 231 | 2.16e-98 | 289 |
| Msa0720160 | AT5G16840.3 | 62.288 | 236 | 81 | 4 | 1 | 236 | 1 | 228 | 2.99e-98 | 289 |
| Msa0720160 | AT5G16840.1 | 62.393 | 234 | 80 | 4 | 3 | 236 | 5 | 230 | 1.94e-97 | 287 |
| Msa0720160 | AT1G67950.3 | 53.942 | 241 | 101 | 2 | 3 | 243 | 28 | 258 | 3.21e-82 | 249 |
| Msa0720160 | AT1G67950.1 | 53.689 | 244 | 102 | 3 | 3 | 246 | 28 | 260 | 1.52e-81 | 247 |
| Msa0720160 | AT1G67950.2 | 53.689 | 244 | 102 | 3 | 3 | 246 | 29 | 261 | 1.71e-81 | 247 |
| Msa0720160 | AT5G32450.1 | 47.154 | 246 | 115 | 2 | 4 | 234 | 5 | 250 | 1.93e-65 | 206 |
| Msa0720160 | AT1G67950.4 | 52.153 | 209 | 89 | 3 | 35 | 243 | 1 | 198 | 9.08e-64 | 200 |
| Msa0720160 | AT1G14340.1 | 38.559 | 236 | 130 | 2 | 6 | 230 | 9 | 240 | 5.91e-41 | 142 |
| Msa0720160 | AT3G01210.2 | 34.583 | 240 | 135 | 3 | 7 | 228 | 9 | 244 | 6.38e-32 | 119 |
| Msa0720160 | AT3G01210.1 | 34.583 | 240 | 135 | 3 | 7 | 228 | 9 | 244 | 6.38e-32 | 119 |
Find 96 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGAAACTGTTTGTTTA+TGG | 0.141711 | 5_1:+16102927 | None:intergenic |
| TCACTTACTGCTGCTGCTTT+TGG | 0.172080 | 5_1:+16098863 | None:intergenic |
| AGAAGTGGATCAAAAGTTTC+TGG | 0.237272 | 5_1:-16099125 | Msa0720160:CDS |
| TACATAGCGATTCTTCATTA+TGG | 0.279605 | 5_1:+16099039 | None:intergenic |
| GCCTGGTCCTGCTCCTGCTC+AGG | 0.286119 | 5_1:-16098825 | Msa0720160:CDS |
| CCCTTGGTTAAACTATTATC+AGG | 0.295974 | 5_1:+16098579 | None:intergenic |
| CTGAGGCTTTCGATGATAAC+TGG | 0.317547 | 5_1:+16099230 | None:intergenic |
| GCAGCCAAAGGCTTTATCTT+AGG | 0.324517 | 5_1:-16099295 | Msa0720160:CDS |
| AAGAATCGCTATGTACTTAC+TGG | 0.334978 | 5_1:-16099031 | Msa0720160:CDS |
| ACTGGGGCCTCTTGGGTAAC+GGG | 0.340405 | 5_1:-16099013 | Msa0720160:CDS |
| CTTGGGCTTAGTGAGAAAAT+AGG | 0.358546 | 5_1:-16099181 | Msa0720160:CDS |
| ATGGAAAGAAGAAAATGAAT+TGG | 0.366118 | 5_1:+16102871 | None:intergenic |
| GAACTACCGGCAAAGAAAAT+AGG | 0.369265 | 5_1:+16098605 | None:intergenic |
| TCAGGTGGAAGCTGGTAATC+TGG | 0.379435 | 5_1:+16099492 | None:intergenic |
| GGAAACGTTGCTGACTTTAA+CGG | 0.389154 | 5_1:+16101123 | None:intergenic |
| TGTACTTACTGGGGCCTCTT+GGG | 0.389213 | 5_1:-16099020 | Msa0720160:CDS |
| AAGAAAATTAAACAGCAAAT+TGG | 0.399845 | 5_1:+16098673 | None:intergenic |
| CCAGCTTCCACCTGATGTCC+TGG | 0.402216 | 5_1:-16099484 | Msa0720160:CDS |
| AACTGCTTATGTTACCTTCA+AGG | 0.409901 | 5_1:-16100900 | Msa0720160:CDS |
| TACTGGGGCCTCTTGGGTAA+CGG | 0.411141 | 5_1:-16099014 | Msa0720160:CDS |
| ATGTACTTACTGGGGCCTCT+TGG | 0.411693 | 5_1:-16099021 | Msa0720160:CDS |
| TTTGCCTAAGATAAAGCCTT+TGG | 0.412306 | 5_1:+16099291 | None:intergenic |
| TCAAACAAGATAAATACATT+TGG | 0.418425 | 5_1:+16098778 | None:intergenic |
| TAAAGTCAGCAACGTTTCCT+TGG | 0.428384 | 5_1:-16101119 | Msa0720160:CDS |
| TGTGGTGAACGGAAAGCGTT+AGG | 0.443296 | 5_1:+16102848 | None:intergenic |
| AAAACAAATATATAATAGTC+TGG | 0.444752 | 5_1:+16098737 | None:intergenic |
| AAAGTCAGCAACGTTTCCTT+GGG | 0.448315 | 5_1:-16101118 | Msa0720160:CDS |
| TAACATAAACTGGATTTCCT+AGG | 0.449312 | 5_1:-16098647 | Msa0720160:three_prime_UTR |
| TGGAAAGAAGAAAATGAATT+GGG | 0.457150 | 5_1:+16102872 | None:intergenic |
| CTCTGCTTTGCGGAAGGCAG+AGG | 0.460878 | 5_1:-16099335 | Msa0720160:CDS |
| AGCTCCCTGTGAGTCCTTGA+AGG | 0.464993 | 5_1:+16100886 | None:intergenic |
| AGCAGGAGCAGGACCAGGCT+TGG | 0.466748 | 5_1:+16098829 | None:intergenic |
| TCAGAAAACAAAAGAGAAAG+TGG | 0.468617 | 5_1:-16098951 | Msa0720160:CDS |
| ACAGGTGAAACCAGGACATC+AGG | 0.473780 | 5_1:+16099474 | None:intergenic |
| CCTGGTCCTGCTCCTGCTCA+GGG | 0.474520 | 5_1:-16098824 | Msa0720160:CDS |
| GTCCCGATCGGTTGCTCCCA+AGG | 0.478047 | 5_1:+16101102 | None:intergenic |
| TATATACCGACGTTGGTGTC+GGG | 0.479133 | 5_1:-16103059 | None:intergenic |
| GATAAAGCCTTTGGCTGCCA+TGG | 0.490356 | 5_1:+16099300 | None:intergenic |
| TTTATGGAAGAAGATTTAAG+AGG | 0.499755 | 5_1:+16102943 | None:intergenic |
| CAAAGGATCAAACCCTGAGC+AGG | 0.508481 | 5_1:+16098812 | None:intergenic |
| CCCTGAGCAGGAGCAGGACC+AGG | 0.511908 | 5_1:+16098824 | None:intergenic |
| GAGCAGCAGTCTTCCAAGCC+TGG | 0.512092 | 5_1:-16098842 | Msa0720160:CDS |
| ATCAAACCCTGAGCAGGAGC+AGG | 0.514850 | 5_1:+16098818 | None:intergenic |
| ACCGACGTTGGTGTCGGGAC+AGG | 0.518230 | 5_1:-16103054 | None:intergenic |
| TTCCTTGGGAGCAACCGATC+GGG | 0.521537 | 5_1:-16101104 | Msa0720160:CDS |
| TGTTACCTTCAAGGACTCAC+AGG | 0.527292 | 5_1:-16100891 | Msa0720160:CDS |
| TATTATCAGGTAAGAACTAC+CGG | 0.529514 | 5_1:+16098592 | None:intergenic |
| CCAGGACATCAGGTGGAAGC+TGG | 0.539426 | 5_1:+16099484 | None:intergenic |
| TGCTGACTCTGCTTTGCGGA+AGG | 0.545827 | 5_1:-16099341 | Msa0720160:CDS |
| GTACTCGCTAGCATTTCCCT+TGG | 0.547048 | 5_1:+16098563 | None:intergenic |
| GTATATACCGACGTTGGTGT+CGG | 0.547955 | 5_1:-16103060 | None:intergenic |
| AAAGCAGAGTCAGCACCACC+AGG | 0.550514 | 5_1:+16099349 | None:intergenic |
| TTCGAATTCATCTCCGATGT+CGG | 0.555714 | 5_1:-16102822 | Msa0720160:intron |
| TTATGGAAGAAGATTTAAGA+GGG | 0.558081 | 5_1:+16102944 | None:intergenic |
| ATGAACGATAGGCAGTTACA+TGG | 0.559818 | 5_1:-16098697 | Msa0720160:three_prime_UTR |
| AGAATCGCTATGTACTTACT+GGG | 0.560460 | 5_1:-16099030 | Msa0720160:CDS |
| GTGAACGGAAAGCGTTAGGA+TGG | 0.563921 | 5_1:+16102852 | None:intergenic |
| GTAAGTGAAAGTAAAACTCC+TGG | 0.566343 | 5_1:-16099367 | Msa0720160:CDS |
| TTTCCTTGGGAGCAACCGAT+CGG | 0.567350 | 5_1:-16101105 | Msa0720160:CDS |
| TGAGACTGCTGTGTTGCTAT+CGG | 0.568447 | 5_1:-16100864 | Msa0720160:intron |
| TCTAAGGCAGCTGTAGAAGT+AGG | 0.569408 | 5_1:-16098974 | Msa0720160:CDS |
| ATAGTCTGGAAACAGTCTGC+AGG | 0.572953 | 5_1:+16098751 | None:intergenic |
| GAGTGATAAAGTTCGAGAAG+TGG | 0.574003 | 5_1:-16099140 | Msa0720160:CDS |
| CCAGAGTTATTGTAACCGAC+AGG | 0.574661 | 5_1:+16099517 | None:intergenic |
| GTGGTGCTGACTCTGCTTTG+CGG | 0.575762 | 5_1:-16099345 | Msa0720160:CDS |
| CCTGTCGGTTACAATAACTC+TGG | 0.579610 | 5_1:-16099517 | Msa0720160:CDS |
| AAAATCAGCATTTGCAGCTG+CGG | 0.580805 | 5_1:-16099089 | Msa0720160:CDS |
| GTCTCCACCATGGCAGCCAA+AGG | 0.583043 | 5_1:-16099307 | Msa0720160:CDS |
| GAACAGACAGTCAGTACCGC+TGG | 0.585550 | 5_1:-16099067 | Msa0720160:CDS |
| ACCTGATAATAGTTTAACCA+AGG | 0.591554 | 5_1:-16098580 | Msa0720160:three_prime_UTR |
| AACAGATGCAACTGTTGCTG+AGG | 0.591922 | 5_1:+16099213 | None:intergenic |
| GGACAGGTGGTTAATTCACG+TGG | 0.594542 | 5_1:-16103038 | Msa0720160:five_prime_UTR |
| CCTGATAATAGTTTAACCAA+GGG | 0.594549 | 5_1:-16098579 | Msa0720160:three_prime_UTR |
| ATTGGATGTGAATGAACGAT+AGG | 0.598215 | 5_1:-16098708 | Msa0720160:three_prime_UTR |
| GGTTGAAGATCAATATGCAC+AGG | 0.603498 | 5_1:-16098900 | Msa0720160:CDS |
| AGAACAGCAAGAGAAGCGAC+AGG | 0.607277 | 5_1:-16098921 | Msa0720160:CDS |
| AAAGCCTTTGGCTGCCATGG+TGG | 0.608702 | 5_1:+16099303 | None:intergenic |
| ACAGGCTCACAGGTGAAACC+AGG | 0.611215 | 5_1:+16099466 | None:intergenic |
| GACGTTGGTGTCGGGACAGG+TGG | 0.611798 | 5_1:-16103051 | Msa0720160:five_prime_UTR |
| ACATTGCATATGTTGAACTA+CGG | 0.613252 | 5_1:-16101051 | Msa0720160:CDS |
| ATTTGGAAGAAGCAAATCAA+AGG | 0.615051 | 5_1:+16098795 | None:intergenic |
| TTTAGAAACGTAGAAATCCA+TGG | 0.616140 | 5_1:-16103000 | Msa0720160:five_prime_UTR |
| AAATATATAACTTAACACCT+AGG | 0.620051 | 5_1:+16098630 | None:intergenic |
| CTTCATTATGGCAGAACCAG+CGG | 0.621990 | 5_1:+16099051 | None:intergenic |
| GAGAGAGAACTGACCGACAT+CGG | 0.629723 | 5_1:+16102809 | None:intergenic |
| GAACTCTTGAATGTCCCGAT+CGG | 0.630975 | 5_1:+16101090 | None:intergenic |
| CTTAGTGAGAAAATAGGTGC+TGG | 0.632545 | 5_1:-16099175 | Msa0720160:CDS |
| AAAAGCACCCGTTACCCAAG+AGG | 0.634112 | 5_1:+16099006 | None:intergenic |
| AGCAACAATCGTCGACCTGT+CGG | 0.648969 | 5_1:-16099532 | Msa0720160:CDS |
| GGTGAAACCAGGACATCAGG+TGG | 0.653918 | 5_1:+16099477 | None:intergenic |
| GTTACCTTCAAGGACTCACA+GGG | 0.654621 | 5_1:-16100890 | Msa0720160:CDS |
| TTGCATATGTTGAACTACGG+AGG | 0.697074 | 5_1:-16101048 | Msa0720160:intron |
| AGTGAAAGTAAAACTCCTGG+TGG | 0.700864 | 5_1:-16099364 | Msa0720160:CDS |
| GAATCGCTATGTACTTACTG+GGG | 0.704674 | 5_1:-16099029 | Msa0720160:CDS |
| AGAGGATGTAGTCTCCACCA+TGG | 0.712456 | 5_1:-16099317 | Msa0720160:CDS |
| AAGCGTGTGAGTGACTACCA+TGG | 0.749293 | 5_1:+16102983 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATACACAATTTTATT+TGG | + | chr5_1:16100050-16100069 | None:intergenic | 10.0% |
| !! | ATAAAATTGTGTATAATATA+AGG | - | chr5_1:16100051-16100070 | Msa0720160:intron | 10.0% |
| !! | ATATAGTATGTATATATATT+TGG | - | chr5_1:16101006-16101025 | Msa0720160:intron | 10.0% |
| !!! | GAATTCATTTTTTTTTTGTT+AGG | - | chr5_1:16098834-16098853 | Msa0720160:CDS | 15.0% |
| !! | ACTTAGTAATATAATATCTT+TGG | + | chr5_1:16099342-16099361 | None:intergenic | 15.0% |
| !! | CATTTATACTCTTAAAAAAA+CGG | + | chr5_1:16099626-16099645 | None:intergenic | 15.0% |
| !!! | CATTTATACTCTAAAAAAAT+TGG | + | chr5_1:16099649-16099668 | None:intergenic | 15.0% |
| !! | TAACAAAGTTTATAAAAGAA+AGG | + | chr5_1:16100639-16100658 | None:intergenic | 15.0% |
| !! | GTATCAATATATAGAAATTA+GGG | + | chr5_1:16100671-16100690 | None:intergenic | 15.0% |
| !! | TGTATCAATATATAGAAATT+AGG | + | chr5_1:16100672-16100691 | None:intergenic | 15.0% |
| !!! | AAATTATATTTGTTAACTAC+TGG | - | chr5_1:16100893-16100912 | Msa0720160:CDS | 15.0% |
| !!! | ATGTTATATTTGTTTTCTTT+GGG | - | chr5_1:16101036-16101055 | Msa0720160:intron | 15.0% |
| !!! | GATAAATTTTTAAAGTCTTA+AGG | + | chr5_1:16101251-16101270 | None:intergenic | 15.0% |
| !! | AAGATAAAAAAGCAAATTAA+AGG | + | chr5_1:16101293-16101312 | None:intergenic | 15.0% |
| !! | ATTGAAGATAATACTAATAT+GGG | + | chr5_1:16101344-16101363 | None:intergenic | 15.0% |
| !! | AATTGAAGATAATACTAATA+TGG | + | chr5_1:16101345-16101364 | None:intergenic | 15.0% |
| !! | AACAATAATGACAAATTATA+TGG | + | chr5_1:16101421-16101440 | None:intergenic | 15.0% |
| !! | TGATTGAATATGAATATAAA+TGG | - | chr5_1:16101776-16101795 | Msa0720160:intron | 15.0% |
| !! | AAAACAAATATATAATAGTC+TGG | + | chr5_1:16102877-16102896 | None:intergenic | 15.0% |
| !!! | TATATTTGTTTTTTGCAAAT+TGG | - | chr5_1:16102885-16102904 | Msa0720160:five_prime_UTR | 15.0% |
| !!! | GATCTTTTATTTATTGTTTG+AGG | - | chr5_1:16099064-16099083 | Msa0720160:CDS | 20.0% |
| !!! | GATTTTTATCAAGTATTGAA+TGG | - | chr5_1:16099086-16099105 | Msa0720160:CDS | 20.0% |
| !! | CTTAAAAAAACGGTTAAAAA+AGG | + | chr5_1:16099616-16099635 | None:intergenic | 20.0% |
| !! | ATACAACATTATCCTTAAAA+GGG | + | chr5_1:16099682-16099701 | None:intergenic | 20.0% |
| !! | AATACAACATTATCCTTAAA+AGG | + | chr5_1:16099683-16099702 | None:intergenic | 20.0% |
| !! | GGTTCTTTAATTATTAACTA+TGG | - | chr5_1:16099813-16099832 | Msa0720160:intron | 20.0% |
| !! | TCTTTAATTATTAACTATGG+TGG | - | chr5_1:16099816-16099835 | Msa0720160:intron | 20.0% |
| !!! | ATGTTATGATTCTTTTAACT+TGG | - | chr5_1:16100244-16100263 | Msa0720160:intron | 20.0% |
| !! | TATAAAATTACAGGTAAACA+AGG | + | chr5_1:16100286-16100305 | None:intergenic | 20.0% |
| !! | AATATGATTTGAATGTAGAT+AGG | - | chr5_1:16100410-16100429 | Msa0720160:intron | 20.0% |
| !!! | CATGTTATATTTGTTTTCTT+TGG | - | chr5_1:16101035-16101054 | Msa0720160:intron | 20.0% |
| !!! | TGTTATATTTGTTTTCTTTG+GGG | - | chr5_1:16101037-16101056 | Msa0720160:intron | 20.0% |
| !! | TTGAATATGAATATAAATGG+AGG | - | chr5_1:16101779-16101798 | Msa0720160:intron | 20.0% |
| !! | CAAAAATTTACATGTTTGTA+AGG | + | chr5_1:16102221-16102240 | None:intergenic | 20.0% |
| !! | TCAAACAAGATAAATACATT+TGG | + | chr5_1:16102836-16102855 | None:intergenic | 20.0% |
| !! | AAGAAAATTAAACAGCAAAT+TGG | + | chr5_1:16102941-16102960 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTGTAACATAAAC+TGG | - | chr5_1:16102954-16102973 | Msa0720160:five_prime_UTR | 20.0% |
| !! | AAATATATAACTTAACACCT+AGG | + | chr5_1:16102984-16103003 | None:intergenic | 20.0% |
| ! | TTATGGAAGAAGATTTAAGA+GGG | + | chr5_1:16098670-16098689 | None:intergenic | 25.0% |
| ! | TTTATGGAAGAAGATTTAAG+AGG | + | chr5_1:16098671-16098690 | None:intergenic | 25.0% |
| ! | AAGAAGAAACTGTTTGTTTA+TGG | + | chr5_1:16098687-16098706 | None:intergenic | 25.0% |
| ! | TGGAAAGAAGAAAATGAATT+GGG | + | chr5_1:16098742-16098761 | None:intergenic | 25.0% |
| ! | ATGGAAAGAAGAAAATGAAT+TGG | + | chr5_1:16098743-16098762 | None:intergenic | 25.0% |
| ! | TTCTGACAATTAATTTCCTT+TGG | - | chr5_1:16098863-16098882 | Msa0720160:CDS | 25.0% |
| ! | ATGAACGTATATTTAGTGTT+TGG | - | chr5_1:16098895-16098914 | Msa0720160:CDS | 25.0% |
| ! | TATTTAGTGTTTGGTATCTT+AGG | - | chr5_1:16098904-16098923 | Msa0720160:CDS | 25.0% |
| !!! | TTACGATTCTTGTTTTCAAT+TGG | - | chr5_1:16098973-16098992 | Msa0720160:CDS | 25.0% |
| !!! | AAAACTGCTACTTTTTTTCT+TGG | - | chr5_1:16099005-16099024 | Msa0720160:CDS | 25.0% |
| ! | TAAAAGATCAGCATCTATAA+AGG | + | chr5_1:16099053-16099072 | None:intergenic | 25.0% |
| ! | GTCAAGTATTAGTATGAATA+AGG | + | chr5_1:16099265-16099284 | None:intergenic | 25.0% |
| ! | GCAATAAAACTTAAAAAGAG+AGG | + | chr5_1:16099782-16099801 | None:intergenic | 25.0% |
| !!! | ATTTTTAGACATTGCAATAG+CGG | - | chr5_1:16099897-16099916 | Msa0720160:intron | 25.0% |
| !!! | ATGACTTATCCTTTTAAAAG+AGG | - | chr5_1:16100088-16100107 | Msa0720160:intron | 25.0% |
| !! | TTTAGGTAACCTCTTTTAAA+AGG | + | chr5_1:16100100-16100119 | None:intergenic | 25.0% |
| ! | TACTGACAAGAAATACTATA+TGG | - | chr5_1:16100355-16100374 | Msa0720160:intron | 25.0% |
| ! | ACTGACAAGAAATACTATAT+GGG | - | chr5_1:16100356-16100375 | Msa0720160:intron | 25.0% |
| !! | AAGAGTTCTTTTCTTTTTCT+GGG | - | chr5_1:16100536-16100555 | Msa0720160:intron | 25.0% |
| !!! | CTTAAGTGTCACTTAATTTA+GGG | + | chr5_1:16100806-16100825 | None:intergenic | 25.0% |
| ! | ATGCATAGTAGAGTATAATA+GGG | - | chr5_1:16100936-16100955 | Msa0720160:intron | 25.0% |
| !!! | AATGTCATTTAATTTGTGAC+TGG | - | chr5_1:16101139-16101158 | Msa0720160:intron | 25.0% |
| ! | TCTCATAAATCACTATATAG+AGG | - | chr5_1:16101440-16101459 | Msa0720160:intron | 25.0% |
| ! | AATAAGAGTTTCAGTAATGT+GGG | + | chr5_1:16101596-16101615 | None:intergenic | 25.0% |
| ! | TAATAAGAGTTTCAGTAATG+TGG | + | chr5_1:16101597-16101616 | None:intergenic | 25.0% |
| ! | TTCTAATGTAACAGTATGTT+TGG | - | chr5_1:16101953-16101972 | Msa0720160:intron | 25.0% |
| ! | ATGTGAAACTGCATTATATT+TGG | + | chr5_1:16102050-16102069 | None:intergenic | 25.0% |
| ! | CATGCAATAAAAATTACAGA+GGG | + | chr5_1:16102177-16102196 | None:intergenic | 25.0% |
| !! | ACAAACATGTAAATTTTTGC+AGG | - | chr5_1:16102222-16102241 | Msa0720160:intron | 25.0% |
| TTTAGAAACGTAGAAATCCA+TGG | - | chr5_1:16098611-16098630 | Msa0720160:three_prime_UTR | 30.0% | |
| ! | AATTCGAATTTTGTGGTGAA+CGG | + | chr5_1:16098777-16098796 | None:intergenic | 30.0% |
| CGTTCATAATCAAAATCCAA+AGG | + | chr5_1:16098882-16098901 | None:intergenic | 30.0% | |
| !! | TCTAGCAACTTTAAAATACC+TGG | - | chr5_1:16099407-16099426 | Msa0720160:intron | 30.0% |
| AACGGTTAAAAAAGGAATTG+AGG | + | chr5_1:16099608-16099627 | None:intergenic | 30.0% | |
| ATCCTTAAAAGGGTTTGAAT+TGG | + | chr5_1:16099672-16099691 | None:intergenic | 30.0% | |
| !! | GTTTTATTGCTTTGTAGCTT+AGG | - | chr5_1:16099792-16099811 | Msa0720160:intron | 30.0% |
| ! | TATTCCGCTATAGCATTTTA+GGG | - | chr5_1:16099921-16099940 | Msa0720160:intron | 30.0% |
| TGATATCATATCATCGTCAT+AGG | + | chr5_1:16100017-16100036 | None:intergenic | 30.0% | |
| ACCTAAAGATGATAAACCTA+AGG | - | chr5_1:16100113-16100132 | Msa0720160:intron | 30.0% | |
| ACCTTAGGTTTATCATCTTT+AGG | + | chr5_1:16100117-16100136 | None:intergenic | 30.0% | |
| !!! | TTCTTGCTCCTGTTTTTAAA+AGG | - | chr5_1:16100155-16100174 | Msa0720160:intron | 30.0% |
| ! | TGACTTTAACGGTTTTTATC+TGG | + | chr5_1:16100480-16100499 | None:intergenic | 30.0% |
| ! | CAAGAGTTCTTTTCTTTTTC+TGG | - | chr5_1:16100535-16100554 | Msa0720160:intron | 30.0% |
| ! | AGAGTTCTTTTCTTTTTCTG+GGG | - | chr5_1:16100537-16100556 | Msa0720160:intron | 30.0% |
| ACATTGCATATGTTGAACTA+CGG | - | chr5_1:16100560-16100579 | Msa0720160:intron | 30.0% | |
| !! | CCTTAAGTGTCACTTAATTT+AGG | + | chr5_1:16100807-16100826 | None:intergenic | 30.0% |
| CCTAAATTAAGTGACACTTA+AGG | - | chr5_1:16100804-16100823 | Msa0720160:intron | 30.0% | |
| GATGCATAGTAGAGTATAAT+AGG | - | chr5_1:16100935-16100954 | Msa0720160:intron | 30.0% | |
| ! | TGGAGGAGTATATATTAGTA+GGG | - | chr5_1:16101159-16101178 | Msa0720160:intron | 30.0% |
| TAGTGATATCTGAGTACAAT+TGG | + | chr5_1:16101379-16101398 | None:intergenic | 30.0% | |
| AAATCACTATATAGAGGTCA+AGG | - | chr5_1:16101446-16101465 | Msa0720160:intron | 30.0% | |
| GAAACACAATGCAGTATTAA+CGG | - | chr5_1:16101534-16101553 | Msa0720160:intron | 30.0% | |
| AAACACAATGCAGTATTAAC+GGG | - | chr5_1:16101535-16101554 | Msa0720160:intron | 30.0% | |
| TGGATAGAAACATCTAACAA+TGG | - | chr5_1:16101720-16101739 | Msa0720160:intron | 30.0% | |
| ACTATTTGTCTGTGGTAATT+GGG | - | chr5_1:16101879-16101898 | Msa0720160:intron | 30.0% | |
| AATGCAGTTTCACATATTTC+AGG | - | chr5_1:16102055-16102074 | Msa0720160:intron | 30.0% | |
| ATGCAGTTTCACATATTTCA+GGG | - | chr5_1:16102056-16102075 | Msa0720160:intron | 30.0% | |
| GCATGCAATAAAAATTACAG+AGG | + | chr5_1:16102178-16102197 | None:intergenic | 30.0% | |
| TTTATTGCATGCAAGTAAGT+AGG | - | chr5_1:16102186-16102205 | Msa0720160:intron | 30.0% | |
| TACATAGCGATTCTTCATTA+TGG | + | chr5_1:16102575-16102594 | None:intergenic | 30.0% | |
| TCAGAAAACAAAAGAGAAAG+TGG | - | chr5_1:16102660-16102679 | Msa0720160:intron | 30.0% | |
| ATTTGGAAGAAGCAAATCAA+AGG | + | chr5_1:16102819-16102838 | None:intergenic | 30.0% | |
| TAACATAAACTGGATTTCCT+AGG | - | chr5_1:16102964-16102983 | Msa0720160:five_prime_UTR | 30.0% | |
| ! | ATTTCTCCTATTTTCTTTGC+CGG | - | chr5_1:16103000-16103019 | Msa0720160:five_prime_UTR | 30.0% |
| TATTATCAGGTAAGAACTAC+CGG | + | chr5_1:16103022-16103041 | None:intergenic | 30.0% | |
| ACCTGATAATAGTTTAACCA+AGG | - | chr5_1:16103031-16103050 | Msa0720160:five_prime_UTR | 30.0% | |
| CCTGATAATAGTTTAACCAA+GGG | - | chr5_1:16103032-16103051 | Msa0720160:five_prime_UTR | 30.0% | |
| ! | GGAGATGAATTCGAATTTTG+TGG | + | chr5_1:16098784-16098803 | None:intergenic | 35.0% |
| ! | AGTATTGAATGGTGATAAGC+TGG | - | chr5_1:16099097-16099116 | Msa0720160:CDS | 35.0% |
| ACTTGACTCTCACTCAAATA+AGG | - | chr5_1:16099278-16099297 | Msa0720160:CDS | 35.0% | |
| ! | ACTATAGTGGAATTGCATAG+CGG | - | chr5_1:16099450-16099469 | Msa0720160:intron | 35.0% |
| !! | ATTTTAGCAGCCGGTAATTT+CGG | - | chr5_1:16099524-16099543 | Msa0720160:CDS | 35.0% |
| TGTTCACTATTAGGGTTTCA+GGG | - | chr5_1:16099575-16099594 | Msa0720160:intron | 35.0% | |
| ! | TGCCAATTCAAACCCTTTTA+AGG | - | chr5_1:16099667-16099686 | Msa0720160:intron | 35.0% |
| ! | CTATTCCGCTATAGCATTTT+AGG | - | chr5_1:16099920-16099939 | Msa0720160:intron | 35.0% |
| ! | ATTCCGCTATAGCATTTTAG+GGG | - | chr5_1:16099922-16099941 | Msa0720160:intron | 35.0% |
| AAAAACAGGAGCAAGAAAAG+AGG | + | chr5_1:16100152-16100171 | None:intergenic | 35.0% | |
| !! | CGTGTGTTCCTTTTAAAAAC+AGG | + | chr5_1:16100166-16100185 | None:intergenic | 35.0% |
| TTCTTGTCAGTACGCTATAA+TGG | + | chr5_1:16100347-16100366 | None:intergenic | 35.0% | |
| ! | GGGCATTTTGCTTTAATAGT+CGG | - | chr5_1:16100376-16100395 | Msa0720160:intron | 35.0% |
| TGAATGTAGATAGGTACTCA+TGG | - | chr5_1:16100419-16100438 | Msa0720160:intron | 35.0% | |
| AACTGCTTATGTTACCTTCA+AGG | - | chr5_1:16100711-16100730 | Msa0720160:intron | 35.0% | |
| GAGGATAGCGTATTAAGTAA+TGG | + | chr5_1:16100784-16100803 | None:intergenic | 35.0% | |
| !! | AAGTGTCACTTAATTTAGGG+AGG | + | chr5_1:16100803-16100822 | None:intergenic | 35.0% |
| !! | GTCATTTAATTTGTGACTGG+AGG | - | chr5_1:16101142-16101161 | Msa0720160:intron | 35.0% |
| ! | CTGGAGGAGTATATATTAGT+AGG | - | chr5_1:16101158-16101177 | Msa0720160:intron | 35.0% |
| CAAGGTAAAACTACAGGATT+TGG | - | chr5_1:16101464-16101483 | Msa0720160:intron | 35.0% | |
| !! | TGTTCCATAACGGATTACAT+TGG | - | chr5_1:16101490-16101509 | Msa0720160:intron | 35.0% |
| TCCAAAAGGCTGAATATTTC+AGG | + | chr5_1:16101516-16101535 | None:intergenic | 35.0% | |
| TACTGCATTGTGTTTCCAAA+AGG | + | chr5_1:16101530-16101549 | None:intergenic | 35.0% | |
| ! | TTCACTAGTCTCTCTATTTG+TGG | - | chr5_1:16101625-16101644 | Msa0720160:intron | 35.0% |
| ! | AACTTTTCCTTTTACTGCTC+TGG | - | chr5_1:16101700-16101719 | Msa0720160:intron | 35.0% |
| TTTCTATCCAGAGCAGTAAA+AGG | + | chr5_1:16101710-16101729 | None:intergenic | 35.0% | |
| ! | AGGACTATCGAAATTTTAGG+CGG | + | chr5_1:16101748-16101767 | None:intergenic | 35.0% |
| ! | TGCAGGACTATCGAAATTTT+AGG | + | chr5_1:16101751-16101770 | None:intergenic | 35.0% |
| CATATTCAATCATGTACTGC+AGG | + | chr5_1:16101768-16101787 | None:intergenic | 35.0% | |
| CCTAGAAAGAAACATCTAGT+GGG | + | chr5_1:16101855-16101874 | None:intergenic | 35.0% | |
| ACCTAGAAAGAAACATCTAG+TGG | + | chr5_1:16101856-16101875 | None:intergenic | 35.0% | |
| GACTATTTGTCTGTGGTAAT+TGG | - | chr5_1:16101878-16101897 | Msa0720160:intron | 35.0% | |
| ! | TGCAAGTAAGTAGGCTATTT+TGG | - | chr5_1:16102195-16102214 | Msa0720160:intron | 35.0% |
| GTAAGTGAAAGTAAAACTCC+TGG | - | chr5_1:16102244-16102263 | Msa0720160:intron | 35.0% | |
| TTTGCCTAAGATAAAGCCTT+TGG | + | chr5_1:16102323-16102342 | None:intergenic | 35.0% | |
| CATCTGTTGACCAAAAACTT+GGG | - | chr5_1:16102413-16102432 | Msa0720160:intron | 35.0% | |
| AGAAGTGGATCAAAAGTTTC+TGG | - | chr5_1:16102486-16102505 | Msa0720160:intron | 35.0% | |
| AAGAATCGCTATGTACTTAC+TGG | - | chr5_1:16102580-16102599 | Msa0720160:intron | 35.0% | |
| AGAATCGCTATGTACTTACT+GGG | - | chr5_1:16102581-16102600 | Msa0720160:intron | 35.0% | |
| ! | TGCTTTTAACAGGGTTTCTA+AGG | - | chr5_1:16102621-16102640 | Msa0720160:intron | 35.0% |
| ATTGGATGTGAATGAACGAT+AGG | - | chr5_1:16102903-16102922 | Msa0720160:five_prime_UTR | 35.0% | |
| CCCTTGGTTAAACTATTATC+AGG | + | chr5_1:16103035-16103054 | None:intergenic | 35.0% | |
| TTCGAATTCATCTCCGATGT+CGG | - | chr5_1:16098789-16098808 | Msa0720160:three_prime_UTR | 40.0% | |
| CCTAATAGTGAACACAGTAG+GGG | + | chr5_1:16099569-16099588 | None:intergenic | 40.0% | |
| CCCTAATAGTGAACACAGTA+GGG | + | chr5_1:16099570-16099589 | None:intergenic | 40.0% | |
| CCCTACTGTGTTCACTATTA+GGG | - | chr5_1:16099567-16099586 | Msa0720160:intron | 40.0% | |
| ACCCTAATAGTGAACACAGT+AGG | + | chr5_1:16099571-16099590 | None:intergenic | 40.0% | |
| GTGTTCACTATTAGGGTTTC+AGG | - | chr5_1:16099574-16099593 | Msa0720160:intron | 40.0% | |
| ! | TTCCGCTATAGCATTTTAGG+GGG | - | chr5_1:16099923-16099942 | Msa0720160:intron | 40.0% |
| AGGAAGGAGGTAAAAACCTT+AGG | + | chr5_1:16100132-16100151 | None:intergenic | 40.0% | |
| !! | GGAAACGTTGCTGACTTTAA+CGG | + | chr5_1:16100491-16100510 | None:intergenic | 40.0% |
| TAAAGTCAGCAACGTTTCCT+TGG | - | chr5_1:16100492-16100511 | Msa0720160:intron | 40.0% | |
| AAAGTCAGCAACGTTTCCTT+GGG | - | chr5_1:16100493-16100512 | Msa0720160:intron | 40.0% | |
| TTGCATATGTTGAACTACGG+AGG | - | chr5_1:16100563-16100582 | Msa0720160:intron | 40.0% | |
| CAGTTACTACTTACTGCACT+TGG | - | chr5_1:16100587-16100606 | Msa0720160:intron | 40.0% | |
| ! | AGAAAGGACTCTAAGAGAAG+TGG | + | chr5_1:16100623-16100642 | None:intergenic | 40.0% |
| TATGGGACACACTAACTAGT+GGG | + | chr5_1:16101327-16101346 | None:intergenic | 40.0% | |
| ATATGGGACACACTAACTAG+TGG | + | chr5_1:16101328-16101347 | None:intergenic | 40.0% | |
| AGAGGTCAAGGTAAAACTAC+AGG | - | chr5_1:16101458-16101477 | Msa0720160:intron | 40.0% | |
| ! | GATTTGGTCGTGTTCCATAA+CGG | - | chr5_1:16101480-16101499 | Msa0720160:intron | 40.0% |
| ! | GCCTGAAATATTCAGCCTTT+TGG | - | chr5_1:16101512-16101531 | Msa0720160:intron | 40.0% |
| CTCTATTTGTGGAGACACAT+TGG | - | chr5_1:16101636-16101655 | Msa0720160:intron | 40.0% | |
| CCCACTAGATGTTTCTTTCT+AGG | - | chr5_1:16101852-16101871 | Msa0720160:intron | 40.0% | |
| TAGGTGAGACTATTTGTCTG+TGG | - | chr5_1:16101871-16101890 | Msa0720160:intron | 40.0% | |
| AAGAATAGCCACCTATGGTA+TGG | - | chr5_1:16101902-16101921 | Msa0720160:intron | 40.0% | |
| AGAATAGCCACCTATGGTAT+GGG | - | chr5_1:16101903-16101922 | Msa0720160:intron | 40.0% | |
| ! | AATTACAGAGGGTCTAAGAC+AGG | + | chr5_1:16102166-16102185 | None:intergenic | 40.0% |
| AGTGAAAGTAAAACTCCTGG+TGG | - | chr5_1:16102247-16102266 | Msa0720160:intron | 40.0% | |
| GCATCTGTTGACCAAAAACT+TGG | - | chr5_1:16102412-16102431 | Msa0720160:intron | 40.0% | |
| ! | TCTCACTAAGCCCAAGTTTT+TGG | + | chr5_1:16102426-16102445 | None:intergenic | 40.0% |
| CTTGGGCTTAGTGAGAAAAT+AGG | - | chr5_1:16102430-16102449 | Msa0720160:intron | 40.0% | |
| CTTAGTGAGAAAATAGGTGC+TGG | - | chr5_1:16102436-16102455 | Msa0720160:intron | 40.0% | |
| GAGTGATAAAGTTCGAGAAG+TGG | - | chr5_1:16102471-16102490 | Msa0720160:intron | 40.0% | |
| AAAATCAGCATTTGCAGCTG+CGG | - | chr5_1:16102522-16102541 | Msa0720160:intron | 40.0% | |
| GAATCGCTATGTACTTACTG+GGG | - | chr5_1:16102582-16102601 | Msa0720160:intron | 40.0% | |
| GGTTGAAGATCAATATGCAC+AGG | - | chr5_1:16102711-16102730 | Msa0720160:intron | 40.0% | |
| ATGAACGATAGGCAGTTACA+TGG | - | chr5_1:16102914-16102933 | Msa0720160:five_prime_UTR | 40.0% | |
| GAACTACCGGCAAAGAAAAT+AGG | + | chr5_1:16103009-16103028 | None:intergenic | 40.0% | |
| GCTATGACAACATAGACACC+AGG | + | chr5_1:16099428-16099447 | None:intergenic | 45.0% | |
| GTTGTCATAGCGCACTATAG+TGG | - | chr5_1:16099437-16099456 | Msa0720160:intron | 45.0% | |
| ! | ATAGTGGAATTGCATAGCGG+TGG | - | chr5_1:16099453-16099472 | Msa0720160:intron | 45.0% |
| AAAATCACAATCGCCGAAGG+TGG | + | chr5_1:16099509-16099528 | None:intergenic | 45.0% | |
| GCTAAAATCACAATCGCCGA+AGG | + | chr5_1:16099512-16099531 | None:intergenic | 45.0% | |
| !! | GCGATTGTGATTTTAGCAGC+CGG | - | chr5_1:16099515-16099534 | Msa0720160:CDS | 45.0% |
| CCCCTACTGTGTTCACTATT+AGG | - | chr5_1:16099566-16099585 | Msa0720160:intron | 45.0% | |
| GACCCCCTAAAATGCTATAG+CGG | + | chr5_1:16099928-16099947 | None:intergenic | 45.0% | |
| !! | GCTATAGCATTTTAGGGGGT+CGG | - | chr5_1:16099927-16099946 | Msa0720160:intron | 45.0% |
| CTATTCCACAATCAGACACG+TGG | + | chr5_1:16099987-16100006 | None:intergenic | 45.0% | |
| ACAGGAGCAAGAAAAGAGGA+AGG | + | chr5_1:16100148-16100167 | None:intergenic | 45.0% | |
| GAACTCTTGAATGTCCCGAT+CGG | + | chr5_1:16100524-16100543 | None:intergenic | 45.0% | |
| TGTTACCTTCAAGGACTCAC+AGG | - | chr5_1:16100720-16100739 | Msa0720160:intron | 45.0% | |
| GTTACCTTCAAGGACTCACA+GGG | - | chr5_1:16100721-16100740 | Msa0720160:intron | 45.0% | |
| ! | TGAGACTGCTGTGTTGCTAT+CGG | - | chr5_1:16100747-16100766 | Msa0720160:intron | 45.0% |
| CAGGCCAATGTAATCCGTTA+TGG | + | chr5_1:16101497-16101516 | None:intergenic | 45.0% | |
| TTGGGAAGAATAGCCACCTA+TGG | - | chr5_1:16101897-16101916 | Msa0720160:intron | 45.0% | |
| TGTCCTACATCCCATACCAT+AGG | + | chr5_1:16101916-16101935 | None:intergenic | 45.0% | |
| CCAGAGTTATTGTAACCGAC+AGG | + | chr5_1:16102097-16102116 | None:intergenic | 45.0% | |
| ! | CCTGTCGGTTACAATAACTC+TGG | - | chr5_1:16102094-16102113 | Msa0720160:intron | 45.0% |
| ! | GCAGCCAAAGGCTTTATCTT+AGG | - | chr5_1:16102316-16102335 | Msa0720160:intron | 45.0% |
| CTGAGGCTTTCGATGATAAC+TGG | + | chr5_1:16102384-16102403 | None:intergenic | 45.0% | |
| AACAGATGCAACTGTTGCTG+AGG | + | chr5_1:16102401-16102420 | None:intergenic | 45.0% | |
| CTTCATTATGGCAGAACCAG+CGG | + | chr5_1:16102563-16102582 | None:intergenic | 45.0% | |
| !!! | GGTAACGGGTGCTTTTAACA+GGG | - | chr5_1:16102612-16102631 | Msa0720160:intron | 45.0% |
| ! | TCTAAGGCAGCTGTAGAAGT+AGG | - | chr5_1:16102637-16102656 | Msa0720160:intron | 45.0% |
| !!! | ACTTACTGCTGCTGCTTTTG+GGG | + | chr5_1:16102749-16102768 | None:intergenic | 45.0% |
| !!! | CACTTACTGCTGCTGCTTTT+GGG | + | chr5_1:16102750-16102769 | None:intergenic | 45.0% |
| !!! | TCACTTACTGCTGCTGCTTT+TGG | + | chr5_1:16102751-16102770 | None:intergenic | 45.0% |
| ATAGTCTGGAAACAGTCTGC+AGG | + | chr5_1:16102863-16102882 | None:intergenic | 45.0% | |
| !! | TTATAAATTTATAAAATTAC+AGG | + | chr5_1:16100295-16100314 | None:intergenic | 5.0% |
| GGACAGGTGGTTAATTCACG+TGG | - | chr5_1:16098573-16098592 | Msa0720160:three_prime_UTR | 50.0% | |
| AAGCGTGTGAGTGACTACCA+TGG | + | chr5_1:16098631-16098650 | None:intergenic | 50.0% | |
| !! | GTGAACGGAAAGCGTTAGGA+TGG | + | chr5_1:16098762-16098781 | None:intergenic | 50.0% |
| !! | TGTGGTGAACGGAAAGCGTT+AGG | + | chr5_1:16098766-16098785 | None:intergenic | 50.0% |
| GAGAGAGAACTGACCGACAT+CGG | + | chr5_1:16098805-16098824 | None:intergenic | 50.0% | |
| TGGAATTGCATAGCGGTGGT+AGG | - | chr5_1:16099457-16099476 | Msa0720160:intron | 50.0% | |
| GGAATTGCATAGCGGTGGTA+GGG | - | chr5_1:16099458-16099477 | Msa0720160:intron | 50.0% | |
| ! | GGTGCTATGCGGCATTATCT+TGG | - | chr5_1:16099948-16099967 | Msa0720160:intron | 50.0% |
| CATAGCCACGTGTCTGATTG+TGG | - | chr5_1:16099979-16099998 | Msa0720160:intron | 50.0% | |
| GGAGCAAGAAAAGAGGAAGG+AGG | + | chr5_1:16100145-16100164 | None:intergenic | 50.0% | |
| TTTCCTTGGGAGCAACCGAT+CGG | - | chr5_1:16100506-16100525 | Msa0720160:intron | 50.0% | |
| CCTACATCCCATACCATAGG+TGG | + | chr5_1:16101913-16101932 | None:intergenic | 50.0% | |
| CCACCTATGGTATGGGATGT+AGG | - | chr5_1:16101910-16101929 | Msa0720160:intron | 50.0% | |
| AGCAACAATCGTCGACCTGT+CGG | - | chr5_1:16102079-16102098 | Msa0720160:intron | 50.0% | |
| TCAGGTGGAAGCTGGTAATC+TGG | + | chr5_1:16102122-16102141 | None:intergenic | 50.0% | |
| ACAGGTGAAACCAGGACATC+AGG | + | chr5_1:16102140-16102159 | None:intergenic | 50.0% | |
| AGAGGATGTAGTCTCCACCA+TGG | - | chr5_1:16102294-16102313 | Msa0720160:intron | 50.0% | |
| GATAAAGCCTTTGGCTGCCA+TGG | + | chr5_1:16102314-16102333 | None:intergenic | 50.0% | |
| ATGTACTTACTGGGGCCTCT+TGG | - | chr5_1:16102590-16102609 | Msa0720160:intron | 50.0% | |
| TGTACTTACTGGGGCCTCTT+GGG | - | chr5_1:16102591-16102610 | Msa0720160:intron | 50.0% | |
| !! | AAAAGCACCCGTTACCCAAG+AGG | + | chr5_1:16102608-16102627 | None:intergenic | 50.0% |
| !!! | GGGTAACGGGTGCTTTTAAC+AGG | - | chr5_1:16102611-16102630 | Msa0720160:intron | 50.0% |
| AGAACAGCAAGAGAAGCGAC+AGG | - | chr5_1:16102690-16102709 | Msa0720160:intron | 50.0% | |
| !!! | CTTACTGCTGCTGCTTTTGG+GGG | + | chr5_1:16102748-16102767 | None:intergenic | 50.0% |
| CAAAGGATCAAACCCTGAGC+AGG | + | chr5_1:16102802-16102821 | None:intergenic | 50.0% | |
| GTACTCGCTAGCATTTCCCT+TGG | + | chr5_1:16103051-16103070 | None:intergenic | 50.0% | |
| TGCATAGCGGTGGTAGGGTT+TGG | - | chr5_1:16099463-16099482 | Msa0720160:intron | 55.0% | |
| ! | AGGGTTTGGCACGACGCTTT+TGG | - | chr5_1:16099477-16099496 | Msa0720160:CDS | 55.0% |
| ! | CTTTTGGCCCAAGCCACCTT+CGG | - | chr5_1:16099493-16099512 | Msa0720160:CDS | 55.0% |
| ACAATCGCCGAAGGTGGCTT+GGG | + | chr5_1:16099503-16099522 | None:intergenic | 55.0% | |
| CACAGTAGGGGACGCAATAG+CGG | + | chr5_1:16099557-16099576 | None:intergenic | 55.0% | |
| !! | TTTAGGGGGTCGGTGCTATG+CGG | - | chr5_1:16099937-16099956 | Msa0720160:intron | 55.0% |
| TTCCTTGGGAGCAACCGATC+GGG | - | chr5_1:16100507-16100526 | Msa0720160:intron | 55.0% | |
| AGCTCCCTGTGAGTCCTTGA+AGG | + | chr5_1:16100728-16100747 | None:intergenic | 55.0% | |
| GGTGAAACCAGGACATCAGG+TGG | + | chr5_1:16102137-16102156 | None:intergenic | 55.0% | |
| ACAGGCTCACAGGTGAAACC+AGG | + | chr5_1:16102148-16102167 | None:intergenic | 55.0% | |
| ! | AGGGTCTAAGACAGGCTCAC+AGG | + | chr5_1:16102158-16102177 | None:intergenic | 55.0% |
| AAAGCAGAGTCAGCACCACC+AGG | + | chr5_1:16102265-16102284 | None:intergenic | 55.0% | |
| !! | GTGGTGCTGACTCTGCTTTG+CGG | - | chr5_1:16102266-16102285 | Msa0720160:intron | 55.0% |
| !! | TGCTGACTCTGCTTTGCGGA+AGG | - | chr5_1:16102270-16102289 | Msa0720160:intron | 55.0% |
| AAAGCCTTTGGCTGCCATGG+TGG | + | chr5_1:16102311-16102330 | None:intergenic | 55.0% | |
| GAACAGACAGTCAGTACCGC+TGG | - | chr5_1:16102544-16102563 | Msa0720160:intron | 55.0% | |
| TACTGGGGCCTCTTGGGTAA+CGG | - | chr5_1:16102597-16102616 | Msa0720160:intron | 55.0% | |
| !! | CTGCTTTTGGGGGCTCAGAA+AGG | + | chr5_1:16102738-16102757 | None:intergenic | 55.0% |
| ATCAAACCCTGAGCAGGAGC+AGG | + | chr5_1:16102796-16102815 | None:intergenic | 55.0% | |
| CACAATCGCCGAAGGTGGCT+TGG | + | chr5_1:16099504-16099523 | None:intergenic | 60.0% | |
| CGGCATGGGGCCGAAATTAC+CGG | + | chr5_1:16099537-16099556 | None:intergenic | 60.0% | |
| AGGGGACGCAATAGCGGCAT+GGG | + | chr5_1:16099551-16099570 | None:intergenic | 60.0% | |
| TAGGGGACGCAATAGCGGCA+TGG | + | chr5_1:16099552-16099571 | None:intergenic | 60.0% | |
| CCAGGACATCAGGTGGAAGC+TGG | + | chr5_1:16102130-16102149 | None:intergenic | 60.0% | |
| CCAGCTTCCACCTGATGTCC+TGG | - | chr5_1:16102127-16102146 | Msa0720160:intron | 60.0% | |
| CTCTGCTTTGCGGAAGGCAG+AGG | - | chr5_1:16102276-16102295 | Msa0720160:intron | 60.0% | |
| GTCTCCACCATGGCAGCCAA+AGG | - | chr5_1:16102304-16102323 | Msa0720160:intron | 60.0% | |
| ACTGGGGCCTCTTGGGTAAC+GGG | - | chr5_1:16102598-16102617 | Msa0720160:intron | 60.0% | |
| GAGCAGCAGTCTTCCAAGCC+TGG | - | chr5_1:16102769-16102788 | Msa0720160:intron | 60.0% | |
| GGGGACGCAATAGCGGCATG+GGG | + | chr5_1:16099550-16099569 | None:intergenic | 65.0% | |
| GTCCCGATCGGTTGCTCCCA+AGG | + | chr5_1:16100512-16100531 | None:intergenic | 65.0% | |
| AGCAGGAGCAGGACCAGGCT+TGG | + | chr5_1:16102785-16102804 | None:intergenic | 65.0% | |
| CCTGGTCCTGCTCCTGCTCA+GGG | - | chr5_1:16102787-16102806 | Msa0720160:intron | 65.0% | |
| GCCTGGTCCTGCTCCTGCTC+AGG | - | chr5_1:16102786-16102805 | Msa0720160:intron | 70.0% | |
| CCCTGAGCAGGAGCAGGACC+AGG | + | chr5_1:16102790-16102809 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 16098563 | 16103070 | 16098563 | ID=Msa0720160;Name=Msa0720160 |
| chr5_1 | mRNA | 16098563 | 16103070 | 16098563 | ID=Msa0720160-mRNA-1;Parent=Msa0720160;Name=Msa0720160-mRNA-1;_AED=0.05;_eAED=0.05;_QI=242|1|1|1|1|1|5|248|281 |
| chr5_1 | exon | 16098563 | 16099389 | 16098563 | ID=Msa0720160-mRNA-1:exon:6176;Parent=Msa0720160-mRNA-1 |
| chr5_1 | exon | 16099476 | 16099556 | 16099476 | ID=Msa0720160-mRNA-1:exon:6175;Parent=Msa0720160-mRNA-1 |
| chr5_1 | exon | 16100865 | 16100940 | 16100865 | ID=Msa0720160-mRNA-1:exon:6174;Parent=Msa0720160-mRNA-1 |
| chr5_1 | exon | 16101049 | 16101152 | 16101049 | ID=Msa0720160-mRNA-1:exon:6173;Parent=Msa0720160-mRNA-1 |
| chr5_1 | exon | 16102823 | 16103070 | 16102823 | ID=Msa0720160-mRNA-1:exon:6172;Parent=Msa0720160-mRNA-1 |
| chr5_1 | five_prime_UTR | 16102829 | 16103070 | 16102829 | ID=Msa0720160-mRNA-1:five_prime_utr;Parent=Msa0720160-mRNA-1 |
| chr5_1 | CDS | 16102823 | 16102828 | 16102823 | ID=Msa0720160-mRNA-1:cds;Parent=Msa0720160-mRNA-1 |
| chr5_1 | CDS | 16101049 | 16101152 | 16101049 | ID=Msa0720160-mRNA-1:cds;Parent=Msa0720160-mRNA-1 |
| chr5_1 | CDS | 16100865 | 16100940 | 16100865 | ID=Msa0720160-mRNA-1:cds;Parent=Msa0720160-mRNA-1 |
| chr5_1 | CDS | 16099476 | 16099556 | 16099476 | ID=Msa0720160-mRNA-1:cds;Parent=Msa0720160-mRNA-1 |
| chr5_1 | CDS | 16098811 | 16099389 | 16098811 | ID=Msa0720160-mRNA-1:cds;Parent=Msa0720160-mRNA-1 |
| chr5_1 | three_prime_UTR | 16098563 | 16098810 | 16098563 | ID=Msa0720160-mRNA-1:three_prime_utr;Parent=Msa0720160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
