Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769940 | sp|Q9LFD5|BPA1_ARATH | 62.393 | 234 | 80 | 4 | 3 | 236 | 5 | 230 | 1.90e-96 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769940 | A0A396HQQ7 | 96.099 | 282 | 10 | 1 | 1 | 281 | 1 | 282 | 0.0 | 537 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0720160 | Msa0769940 | 0.937124 | 5.762158e-98 | -8.615850e-47 |
| Msa0769940 | Msa0802980 | 0.899279 | 2.319979e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769940 | MtrunA17_Chr5g0410831 | 96.099 | 282 | 10 | 1 | 1 | 281 | 1 | 282 | 0.0 | 537 |
| Msa0769940 | MtrunA17_Chr8g0366351 | 79.715 | 281 | 55 | 1 | 1 | 281 | 1 | 279 | 8.65e-159 | 442 |
| Msa0769940 | MtrunA17_Chr5g0410821 | 95.455 | 154 | 7 | 0 | 113 | 266 | 1 | 154 | 6.61e-100 | 289 |
| Msa0769940 | MtrunA17_Chr1g0161591 | 56.977 | 258 | 99 | 3 | 3 | 253 | 31 | 283 | 1.41e-94 | 281 |
| Msa0769940 | MtrunA17_Chr8g0392141 | 56.274 | 263 | 104 | 2 | 3 | 258 | 31 | 289 | 3.03e-94 | 280 |
| Msa0769940 | MtrunA17_Chr7g0253621 | 45.276 | 254 | 121 | 3 | 1 | 238 | 1 | 252 | 6.03e-64 | 201 |
| Msa0769940 | MtrunA17_Chr5g0416421 | 39.419 | 241 | 125 | 3 | 6 | 230 | 10 | 245 | 3.10e-47 | 158 |
| Msa0769940 | MtrunA17_Chr7g0217131 | 33.077 | 260 | 126 | 8 | 5 | 230 | 7 | 252 | 3.34e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769940 | AT4G17720.1 | 68.773 | 269 | 81 | 2 | 1 | 266 | 1 | 269 | 1.15e-125 | 360 |
| Msa0769940 | AT5G46870.2 | 65.000 | 280 | 89 | 3 | 1 | 271 | 1 | 280 | 4.72e-114 | 330 |
| Msa0769940 | AT5G46870.1 | 65.000 | 280 | 89 | 3 | 1 | 271 | 1 | 280 | 4.72e-114 | 330 |
| Msa0769940 | AT5G16840.2 | 63.248 | 234 | 79 | 4 | 3 | 236 | 5 | 231 | 2.16e-98 | 289 |
| Msa0769940 | AT5G16840.3 | 62.288 | 236 | 81 | 4 | 1 | 236 | 1 | 228 | 2.99e-98 | 289 |
| Msa0769940 | AT5G16840.1 | 62.393 | 234 | 80 | 4 | 3 | 236 | 5 | 230 | 1.94e-97 | 287 |
| Msa0769940 | AT1G67950.3 | 53.942 | 241 | 101 | 2 | 3 | 243 | 28 | 258 | 3.21e-82 | 249 |
| Msa0769940 | AT1G67950.1 | 53.689 | 244 | 102 | 3 | 3 | 246 | 28 | 260 | 1.52e-81 | 247 |
| Msa0769940 | AT1G67950.2 | 53.689 | 244 | 102 | 3 | 3 | 246 | 29 | 261 | 1.71e-81 | 247 |
| Msa0769940 | AT5G32450.1 | 47.154 | 246 | 115 | 2 | 4 | 234 | 5 | 250 | 1.93e-65 | 206 |
| Msa0769940 | AT1G67950.4 | 52.153 | 209 | 89 | 3 | 35 | 243 | 1 | 198 | 9.08e-64 | 200 |
| Msa0769940 | AT1G14340.1 | 38.559 | 236 | 130 | 2 | 6 | 230 | 9 | 240 | 5.91e-41 | 142 |
| Msa0769940 | AT3G01210.2 | 34.583 | 240 | 135 | 3 | 7 | 228 | 9 | 244 | 6.38e-32 | 119 |
| Msa0769940 | AT3G01210.1 | 34.583 | 240 | 135 | 3 | 7 | 228 | 9 | 244 | 6.38e-32 | 119 |
Find 96 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGAAACTGTTTGTTTA+TGG | 0.141711 | 5_2:-39802938 | None:intergenic |
| TCACTTACTGCTGCTGCTTT+TGG | 0.172080 | 5_2:-39807250 | None:intergenic |
| AGAAGTGGATCAAAAGTTTC+TGG | 0.237272 | 5_2:+39806988 | Msa0769940:CDS |
| TACATAGCGATTCTTCATTA+TGG | 0.279605 | 5_2:-39807074 | None:intergenic |
| GCCTGGTCCTGCTCCTGCTC+AGG | 0.286119 | 5_2:+39807288 | Msa0769940:CDS |
| CCCTTGGTTAAACTATTATC+AGG | 0.295974 | 5_2:-39807534 | None:intergenic |
| CTGAGGCTTTCGATGATAAC+TGG | 0.317547 | 5_2:-39806883 | None:intergenic |
| GCAGCCAAAGGCTTTATCTT+AGG | 0.324517 | 5_2:+39806818 | Msa0769940:CDS |
| AAGAATCGCTATGTACTTAC+TGG | 0.334978 | 5_2:+39807082 | Msa0769940:CDS |
| ACTGGGGCCTCTTGGGTAAC+GGG | 0.340405 | 5_2:+39807100 | Msa0769940:CDS |
| CTTGGGCTTAGTGAGAAAAT+AGG | 0.358546 | 5_2:+39806932 | Msa0769940:CDS |
| GAACTACCGGCAAAGAAAAT+AGG | 0.369265 | 5_2:-39807508 | None:intergenic |
| TCAGGTGGAAGCTGGTAATC+TGG | 0.379435 | 5_2:-39806621 | None:intergenic |
| GGAAACGTTGCTGACTTTAA+CGG | 0.389154 | 5_2:-39804877 | None:intergenic |
| TGTACTTACTGGGGCCTCTT+GGG | 0.389213 | 5_2:+39807093 | Msa0769940:CDS |
| ATGGAAAGAAGAAAGTGAAT+TGG | 0.398728 | 5_2:-39802991 | None:intergenic |
| AAGAAAATTAAACAGCAAAT+TGG | 0.399845 | 5_2:-39807440 | None:intergenic |
| CCAGCTTCCACCTGATGTCC+TGG | 0.402216 | 5_2:+39806629 | Msa0769940:CDS |
| AACTGCTTATGTTACCTTCA+AGG | 0.409901 | 5_2:+39805100 | Msa0769940:CDS |
| TACTGGGGCCTCTTGGGTAA+CGG | 0.411141 | 5_2:+39807099 | Msa0769940:CDS |
| ATGTACTTACTGGGGCCTCT+TGG | 0.411693 | 5_2:+39807092 | Msa0769940:CDS |
| TTTGCCTAAGATAAAGCCTT+TGG | 0.412306 | 5_2:-39806822 | None:intergenic |
| TCAAACAAGATAAATACATT+TGG | 0.418425 | 5_2:-39807335 | None:intergenic |
| TAAAGTCAGCAACGTTTCCT+TGG | 0.428384 | 5_2:+39804881 | Msa0769940:CDS |
| TGGAAAGAAGAAAGTGAATT+GGG | 0.437955 | 5_2:-39802990 | None:intergenic |
| TGTGGTGAACGGAAAGCGTT+AGG | 0.443296 | 5_2:-39803014 | None:intergenic |
| AAAACAAATATATAATAGTC+TGG | 0.444752 | 5_2:-39807376 | None:intergenic |
| AAAGTCAGCAACGTTTCCTT+GGG | 0.448315 | 5_2:+39804882 | Msa0769940:CDS |
| TAACATAAACTGGATTTCCT+AGG | 0.449312 | 5_2:+39807466 | Msa0769940:three_prime_UTR |
| CTCTGCTTTGCGGAAGGCAG+AGG | 0.460878 | 5_2:+39806778 | Msa0769940:CDS |
| AGCTCCCTGTGAGTCCTTGA+AGG | 0.464993 | 5_2:-39805114 | None:intergenic |
| AGCAGGAGCAGGACCAGGCT+TGG | 0.466748 | 5_2:-39807284 | None:intergenic |
| TCAGAAAACAAAAGAGAAAG+TGG | 0.468617 | 5_2:+39807162 | Msa0769940:CDS |
| ACAGGTGAAACCAGGACATC+AGG | 0.473780 | 5_2:-39806639 | None:intergenic |
| CCTGGTCCTGCTCCTGCTCA+GGG | 0.474520 | 5_2:+39807289 | Msa0769940:CDS |
| GTCCCGATCGGTTGCTCCCA+AGG | 0.478047 | 5_2:-39804898 | None:intergenic |
| GATAAAGCCTTTGGCTGCCA+TGG | 0.490356 | 5_2:-39806813 | None:intergenic |
| TTTATGGAAGAAGATTTAAG+AGG | 0.499755 | 5_2:-39802922 | None:intergenic |
| CAAAGGATCAAACCCTGAGC+AGG | 0.508481 | 5_2:-39807301 | None:intergenic |
| CCCTGAGCAGGAGCAGGACC+AGG | 0.511908 | 5_2:-39807289 | None:intergenic |
| GAGCAGCAGTCTTCCAAGCC+TGG | 0.512092 | 5_2:+39807271 | Msa0769940:CDS |
| ATCAAACCCTGAGCAGGAGC+AGG | 0.514850 | 5_2:-39807295 | None:intergenic |
| ACCGACGTTGGTGTCGGGAC+AGG | 0.517440 | 5_2:+39802811 | None:intergenic |
| TTCCTTGGGAGCAACCGATC+GGG | 0.521537 | 5_2:+39804896 | Msa0769940:CDS |
| TGTTACCTTCAAGGACTCAC+AGG | 0.527292 | 5_2:+39805109 | Msa0769940:CDS |
| TATTATCAGGTAAGAACTAC+CGG | 0.529514 | 5_2:-39807521 | None:intergenic |
| CCAGGACATCAGGTGGAAGC+TGG | 0.539426 | 5_2:-39806629 | None:intergenic |
| TGCTGACTCTGCTTTGCGGA+AGG | 0.545827 | 5_2:+39806772 | Msa0769940:CDS |
| GTACTCGCTAGCATTTCCCT+TGG | 0.547048 | 5_2:-39807550 | None:intergenic |
| AAAGCAGAGTCAGCACCACC+AGG | 0.550514 | 5_2:-39806764 | None:intergenic |
| TATCATACCGACGTTGGTGT+CGG | 0.552445 | 5_2:+39802805 | None:intergenic |
| TTCGAATTCATCTCCGATGT+CGG | 0.555714 | 5_2:+39803040 | Msa0769940:exon |
| TTATGGAAGAAGATTTAAGA+GGG | 0.558081 | 5_2:-39802921 | None:intergenic |
| ATGAACGATAGGCAGTTACA+TGG | 0.559818 | 5_2:+39807416 | Msa0769940:three_prime_UTR |
| AGAATCGCTATGTACTTACT+GGG | 0.560460 | 5_2:+39807083 | Msa0769940:CDS |
| GTGAACGGAAAGCGTTAGGA+TGG | 0.563921 | 5_2:-39803010 | None:intergenic |
| GTAAGTGAAAGTAAAACTCC+TGG | 0.566343 | 5_2:+39806746 | Msa0769940:CDS |
| TTTCCTTGGGAGCAACCGAT+CGG | 0.567350 | 5_2:+39804895 | Msa0769940:CDS |
| TGAGACTGCTGTGTTGCTAT+CGG | 0.568447 | 5_2:+39805136 | Msa0769940:CDS |
| TCTAAGGCAGCTGTAGAAGT+AGG | 0.569408 | 5_2:+39807139 | Msa0769940:CDS |
| ATAGTCTGGAAACAGTCTGC+AGG | 0.572953 | 5_2:-39807362 | None:intergenic |
| GAGTGATAAAGTTCGAGAAG+TGG | 0.574003 | 5_2:+39806973 | Msa0769940:CDS |
| CCAGAGTTATTGTAACCGAC+AGG | 0.574661 | 5_2:-39806596 | None:intergenic |
| GTGGTGCTGACTCTGCTTTG+CGG | 0.575762 | 5_2:+39806768 | Msa0769940:CDS |
| CCTGTCGGTTACAATAACTC+TGG | 0.579610 | 5_2:+39806596 | Msa0769940:CDS |
| AAAATCAGCATTTGCAGCTG+CGG | 0.580805 | 5_2:+39807024 | Msa0769940:CDS |
| GTCTCCACCATGGCAGCCAA+AGG | 0.583043 | 5_2:+39806806 | Msa0769940:CDS |
| GAACAGACAGTCAGTACCGC+TGG | 0.585550 | 5_2:+39807046 | Msa0769940:CDS |
| ACCTGATAATAGTTTAACCA+AGG | 0.591554 | 5_2:+39807533 | Msa0769940:three_prime_UTR |
| AACAGATGCAACTGTTGCTG+AGG | 0.591922 | 5_2:-39806900 | None:intergenic |
| CCTGATAATAGTTTAACCAA+GGG | 0.594549 | 5_2:+39807534 | Msa0769940:three_prime_UTR |
| ATTGGATGTGAATGAACGAT+AGG | 0.598215 | 5_2:+39807405 | Msa0769940:three_prime_UTR |
| AAATATATAATTTAACACCT+AGG | 0.600759 | 5_2:-39807483 | None:intergenic |
| GGTTGAAGATCAATATGCAC+AGG | 0.603498 | 5_2:+39807213 | Msa0769940:CDS |
| AGAACAGCAAGAGAAGCGAC+AGG | 0.607277 | 5_2:+39807192 | Msa0769940:CDS |
| AAAGCCTTTGGCTGCCATGG+TGG | 0.608702 | 5_2:-39806810 | None:intergenic |
| ACAGGCTCACAGGTGAAACC+AGG | 0.611215 | 5_2:-39806647 | None:intergenic |
| GACGTTGGTGTCGGGACAGG+TGG | 0.611798 | 5_2:+39802814 | None:intergenic |
| ACATTGCATATGTTGAACTA+CGG | 0.613252 | 5_2:+39804949 | Msa0769940:CDS |
| ATTTGGAAGAAGCAAATCAA+AGG | 0.615051 | 5_2:-39807318 | None:intergenic |
| TTTAGAAACGTAGAAATCCA+TGG | 0.616140 | 5_2:+39802865 | Msa0769940:five_prime_UTR |
| CTTCATTATGGCAGAACCAG+CGG | 0.621990 | 5_2:-39807062 | None:intergenic |
| GGACAGGTGGTTAATTCACG+TGG | 0.623559 | 5_2:+39802827 | Msa0769940:five_prime_UTR |
| GAGAGAGAACTGACCGACAT+CGG | 0.629723 | 5_2:-39803053 | None:intergenic |
| GAACTCTTGAATGTCCCGAT+CGG | 0.630975 | 5_2:-39804910 | None:intergenic |
| CTTAGTGAGAAAATAGGTGC+TGG | 0.632545 | 5_2:+39806938 | Msa0769940:CDS |
| AAAAGCACCCGTTACCCAAG+AGG | 0.634112 | 5_2:-39807107 | None:intergenic |
| CGTTTCTAAAGTGTTAAGCA+CGG | 0.639777 | 5_2:-39802852 | None:intergenic |
| AGCAACAATCGTCGACCTGT+CGG | 0.648969 | 5_2:+39806581 | Msa0769940:CDS |
| GGTGAAACCAGGACATCAGG+TGG | 0.653918 | 5_2:-39806636 | None:intergenic |
| GTTACCTTCAAGGACTCACA+GGG | 0.654621 | 5_2:+39805110 | Msa0769940:CDS |
| TTGCATATGTTGAACTACGG+AGG | 0.697074 | 5_2:+39804952 | Msa0769940:CDS |
| AGTGAAAGTAAAACTCCTGG+TGG | 0.700864 | 5_2:+39806749 | Msa0769940:CDS |
| GAATCGCTATGTACTTACTG+GGG | 0.704674 | 5_2:+39807084 | Msa0769940:CDS |
| AGAGGATGTAGTCTCCACCA+TGG | 0.712456 | 5_2:+39806796 | Msa0769940:CDS |
| AAGCGTGTGAGTGACTACCA+TGG | 0.749293 | 5_2:-39802882 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr5_2:39805358-39805377 | Msa0769940:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr5_2:39805359-39805378 | Msa0769940:intron | 0.0% |
| !! | TATATATATATATATATATT+TGG | + | chr5_2:39805505-39805524 | Msa0769940:intron | 0.0% |
| !!! | ACATTCATTTTTTTTTTTTT+AGG | + | chr5_2:39803081-39803100 | Msa0769940:intron | 10.0% |
| !! | ATTTATACTCTTAAAAAAAT+TGG | - | chr5_2:39804039-39804058 | None:intergenic | 10.0% |
| !!! | ATATTATACACAATTTTATT+TGG | - | chr5_2:39804441-39804460 | None:intergenic | 10.0% |
| !! | ATAAAATTGTGTATAATATA+AGG | + | chr5_2:39804442-39804461 | Msa0769940:intron | 10.0% |
| !! | TCAATCAAAAATGATAAAAA+TGG | - | chr5_2:39803286-39803305 | None:intergenic | 15.0% |
| !! | ACAAAAAAAATCAAAGAAAA+CGG | - | chr5_2:39803321-39803340 | None:intergenic | 15.0% |
| !!! | TTATTGTTTGAGTTTTTTTT+TGG | + | chr5_2:39803437-39803456 | Msa0769940:intron | 15.0% |
| !! | ACTTAGTAATATAATATCTT+TGG | - | chr5_2:39803732-39803751 | None:intergenic | 15.0% |
| !! | CATTTATACTCTTAAAAAAA+CGG | - | chr5_2:39804016-39804035 | None:intergenic | 15.0% |
| !! | GTATCAATATATAGAAATTA+GGG | - | chr5_2:39805060-39805079 | None:intergenic | 15.0% |
| !! | TGTATCAATATATAGAAATT+AGG | - | chr5_2:39805061-39805080 | None:intergenic | 15.0% |
| !!! | AAATTATATTTGTTAACTAC+TGG | + | chr5_2:39805282-39805301 | Msa0769940:intron | 15.0% |
| !!! | ATGTTATATTTGTTTTCTTT+GGG | + | chr5_2:39805535-39805554 | Msa0769940:intron | 15.0% |
| !!! | GATAAATTTTTAAAGTCTTA+AGG | - | chr5_2:39805750-39805769 | None:intergenic | 15.0% |
| !! | AAGATAAAAAAGCAAATTAA+AGG | - | chr5_2:39805792-39805811 | None:intergenic | 15.0% |
| !! | ATTGAAGATAATACTAATAT+GGG | - | chr5_2:39805843-39805862 | None:intergenic | 15.0% |
| !! | AATTGAAGATAATACTAATA+TGG | - | chr5_2:39805844-39805863 | None:intergenic | 15.0% |
| !! | AACAATAATGACAAATTATA+TGG | - | chr5_2:39805920-39805939 | None:intergenic | 15.0% |
| !! | TGATTGAATATGAATATAAA+TGG | + | chr5_2:39806278-39806297 | Msa0769940:intron | 15.0% |
| !! | AAAACAAATATATAATAGTC+TGG | - | chr5_2:39807379-39807398 | None:intergenic | 15.0% |
| !!! | TATATTTGTTTTTTGCAAAT+TGG | + | chr5_2:39807387-39807406 | Msa0769940:three_prime_UTR | 15.0% |
| !! | AAATATATAATTTAACACCT+AGG | - | chr5_2:39807486-39807505 | None:intergenic | 15.0% |
| !! | CAAAAAAAATCAAAGAAAAC+GGG | - | chr5_2:39803320-39803339 | None:intergenic | 20.0% |
| !! | CATAGGTTGTTTATAAAATT+AGG | + | chr5_2:39803380-39803399 | Msa0769940:intron | 20.0% |
| !!! | TTTGAGTTTTTTTTTGGTAA+TGG | + | chr5_2:39803443-39803462 | Msa0769940:intron | 20.0% |
| !!! | TTTTTGGTAATGGAATTAAT+TGG | + | chr5_2:39803453-39803472 | Msa0769940:intron | 20.0% |
| !! | AATTAATTGGAAATGATATC+AGG | + | chr5_2:39803466-39803485 | Msa0769940:intron | 20.0% |
| !! | CTTAAAAAAACGGTTAAAAA+AGG | - | chr5_2:39804006-39804025 | None:intergenic | 20.0% |
| !! | ATACAACATTATCCTTAAAA+GGG | - | chr5_2:39804073-39804092 | None:intergenic | 20.0% |
| !! | AATACAACATTATCCTTAAA+AGG | - | chr5_2:39804074-39804093 | None:intergenic | 20.0% |
| !! | GGTTCTTTAATTATTAACTA+TGG | + | chr5_2:39804204-39804223 | Msa0769940:intron | 20.0% |
| !! | TCTTTAATTATTAACTATGG+TGG | + | chr5_2:39804207-39804226 | Msa0769940:intron | 20.0% |
| !!! | ATGTTATGATTCTTTTAACT+TGG | + | chr5_2:39804633-39804652 | Msa0769940:intron | 20.0% |
| !! | TATAAAATTACAGGTAAACA+AGG | - | chr5_2:39804675-39804694 | None:intergenic | 20.0% |
| !! | AATATGATTTGAATGTAGAT+AGG | + | chr5_2:39804799-39804818 | Msa0769940:intron | 20.0% |
| !! | TAACAAAGTTTATAAACGAA+AGG | - | chr5_2:39805028-39805047 | None:intergenic | 20.0% |
| !!! | CATGTTATATTTGTTTTCTT+TGG | + | chr5_2:39805534-39805553 | Msa0769940:intron | 20.0% |
| !!! | TGTTATATTTGTTTTCTTTG+GGG | + | chr5_2:39805536-39805555 | Msa0769940:intron | 20.0% |
| !! | TTGAATATGAATATAAATGG+AGG | + | chr5_2:39806281-39806300 | Msa0769940:intron | 20.0% |
| !! | CAAAAATTTACATGTTTGTA+AGG | - | chr5_2:39806723-39806742 | None:intergenic | 20.0% |
| !! | TCAAACAAGATAAATACATT+TGG | - | chr5_2:39807338-39807357 | None:intergenic | 20.0% |
| !! | AAGAAAATTAAACAGCAAAT+TGG | - | chr5_2:39807443-39807462 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTGTAACATAAAC+TGG | + | chr5_2:39807456-39807475 | Msa0769940:three_prime_UTR | 20.0% |
| ! | TTATGGAAGAAGATTTAAGA+GGG | - | chr5_2:39802924-39802943 | None:intergenic | 25.0% |
| ! | TTTATGGAAGAAGATTTAAG+AGG | - | chr5_2:39802925-39802944 | None:intergenic | 25.0% |
| ! | AAGAAGAAACTGTTTGTTTA+TGG | - | chr5_2:39802941-39802960 | None:intergenic | 25.0% |
| ! | TTCTGACAATTAATTTCCTT+TGG | + | chr5_2:39803110-39803129 | Msa0769940:intron | 25.0% |
| ! | ATGAACGTATATTTAGTGTT+TGG | + | chr5_2:39803142-39803161 | Msa0769940:intron | 25.0% |
| ! | TATTTAGTGTTTGGTATCTT+AGG | + | chr5_2:39803151-39803170 | Msa0769940:intron | 25.0% |
| !!! | TTACGATTCTTGTTTTCAAT+TGG | + | chr5_2:39803220-39803239 | Msa0769940:intron | 25.0% |
| !!! | AAATGATATCAGGTATTGAA+TGG | + | chr5_2:39803476-39803495 | Msa0769940:intron | 25.0% |
| ! | GTCAAGTATTAGTATGAATA+AGG | - | chr5_2:39803655-39803674 | None:intergenic | 25.0% |
| ! | GCAATAAAACTTAAAAAGAG+AGG | - | chr5_2:39804173-39804192 | None:intergenic | 25.0% |
| !!! | ATTTTTAGACATTGCAATAG+CGG | + | chr5_2:39804288-39804307 | Msa0769940:intron | 25.0% |
| !! | TATTCTGCTATAGCATTTTA+GGG | + | chr5_2:39804312-39804331 | Msa0769940:intron | 25.0% |
| ! | TGATATCATATCATCATCAT+AGG | - | chr5_2:39804408-39804427 | None:intergenic | 25.0% |
| !!! | ATGACTTATCCTTTTAAAAG+AGG | + | chr5_2:39804479-39804498 | Msa0769940:intron | 25.0% |
| !! | TTTAGGTAACCTCTTTTAAA+AGG | - | chr5_2:39804491-39804510 | None:intergenic | 25.0% |
| ! | TACTGACAAGAAATACTATA+TGG | + | chr5_2:39804744-39804763 | Msa0769940:intron | 25.0% |
| ! | ACTGACAAGAAATACTATAT+GGG | + | chr5_2:39804745-39804764 | Msa0769940:intron | 25.0% |
| !! | AAGAGTTCTTTTCTTTTTCT+GGG | + | chr5_2:39804925-39804944 | Msa0769940:CDS | 25.0% |
| !!! | CTTAAGTGTCACTTAATTTA+GGG | - | chr5_2:39805195-39805214 | None:intergenic | 25.0% |
| ! | ATGCATAGTAGAGTATAATA+GGG | + | chr5_2:39805323-39805342 | Msa0769940:intron | 25.0% |
| ! | ATATATGACACCTTCATAAA+AGG | - | chr5_2:39805458-39805477 | None:intergenic | 25.0% |
| !!! | AATGTCATTTAATTTGTGAC+TGG | + | chr5_2:39805638-39805657 | Msa0769940:intron | 25.0% |
| ! | TCTCATAAATCACTATATAG+AGG | + | chr5_2:39805939-39805958 | Msa0769940:intron | 25.0% |
| ! | AATAAGAGTTTCAGTAATGT+GGG | - | chr5_2:39806095-39806114 | None:intergenic | 25.0% |
| ! | TAATAAGAGTTTCAGTAATG+TGG | - | chr5_2:39806096-39806115 | None:intergenic | 25.0% |
| ! | ATAGAAACATCTTCTAACAA+TGG | + | chr5_2:39806222-39806241 | Msa0769940:intron | 25.0% |
| ! | TTCTAATGTAACAGTATGTT+TGG | + | chr5_2:39806455-39806474 | Msa0769940:intron | 25.0% |
| ! | CATGCAATAAAAATTACAGA+GGG | - | chr5_2:39806679-39806698 | None:intergenic | 25.0% |
| !! | ACAAACATGTAAATTTTTGC+AGG | + | chr5_2:39806724-39806743 | Msa0769940:intron | 25.0% |
| TTTAGAAACGTAGAAATCCA+TGG | + | chr5_2:39802865-39802884 | Msa0769940:five_prime_UTR | 30.0% | |
| TGGAAAGAAGAAAGTGAATT+GGG | - | chr5_2:39802993-39803012 | None:intergenic | 30.0% | |
| ATGGAAAGAAGAAAGTGAAT+TGG | - | chr5_2:39802994-39803013 | None:intergenic | 30.0% | |
| ! | AATTCGAATTTTGTGGTGAA+CGG | - | chr5_2:39803028-39803047 | None:intergenic | 30.0% |
| CGTTCATAATCAAAATCCAA+AGG | - | chr5_2:39803129-39803148 | None:intergenic | 30.0% | |
| !!! | AAAACTGCTACGTTTTTTCT+TGG | + | chr5_2:39803252-39803271 | Msa0769940:intron | 30.0% |
| !! | ACCCTTTTTGATTATGTGAA+TGG | + | chr5_2:39803342-39803361 | Msa0769940:intron | 30.0% |
| CCCATTCACATAATCAAAAA+GGG | - | chr5_2:39803346-39803365 | None:intergenic | 30.0% | |
| !! | CCCTTTTTGATTATGTGAAT+GGG | + | chr5_2:39803343-39803362 | Msa0769940:intron | 30.0% |
| TCCCATTCACATAATCAAAA+AGG | - | chr5_2:39803347-39803366 | None:intergenic | 30.0% | |
| !! | TTTTGATTATGTGAATGGGA+TGG | + | chr5_2:39803347-39803366 | Msa0769940:intron | 30.0% |
| !! | TCTAGCAACTTTAAAATACC+TGG | + | chr5_2:39803797-39803816 | Msa0769940:intron | 30.0% |
| ACTATATTGGAATTGCATAG+CGG | + | chr5_2:39803840-39803859 | Msa0769940:intron | 30.0% | |
| AACGGTTAAAAAAGGAATTG+AGG | - | chr5_2:39803998-39804017 | None:intergenic | 30.0% | |
| ! | TGTCAATTCAAACCCTTTTA+AGG | + | chr5_2:39804058-39804077 | Msa0769940:intron | 30.0% |
| !! | GTTTTATTGCTTTGTAGCTT+AGG | + | chr5_2:39804183-39804202 | Msa0769940:intron | 30.0% |
| ! | CTATTCTGCTATAGCATTTT+AGG | + | chr5_2:39804311-39804330 | Msa0769940:intron | 30.0% |
| ! | ATTCTGCTATAGCATTTTAG+GGG | + | chr5_2:39804313-39804332 | Msa0769940:intron | 30.0% |
| ACCTAAAGATGATAAACCTA+AGG | + | chr5_2:39804504-39804523 | Msa0769940:intron | 30.0% | |
| ACCTTAGGTTTATCATCTTT+AGG | - | chr5_2:39804508-39804527 | None:intergenic | 30.0% | |
| !!! | TTCTTGCTCCTGTTTTTAAA+AGG | + | chr5_2:39804546-39804565 | Msa0769940:intron | 30.0% |
| ! | TGACTTTAACGGTTTTTATC+TGG | - | chr5_2:39804869-39804888 | None:intergenic | 30.0% |
| ! | CAAGAGTTCTTTTCTTTTTC+TGG | + | chr5_2:39804924-39804943 | Msa0769940:CDS | 30.0% |
| ! | AGAGTTCTTTTCTTTTTCTG+GGG | + | chr5_2:39804926-39804945 | Msa0769940:CDS | 30.0% |
| ACATTGCATATGTTGAACTA+CGG | + | chr5_2:39804949-39804968 | Msa0769940:CDS | 30.0% | |
| !! | CCTTAAGTGTCACTTAATTT+AGG | - | chr5_2:39805196-39805215 | None:intergenic | 30.0% |
| CCTAAATTAAGTGACACTTA+AGG | + | chr5_2:39805193-39805212 | Msa0769940:intron | 30.0% | |
| GATGCATAGTAGAGTATAAT+AGG | + | chr5_2:39805322-39805341 | Msa0769940:intron | 30.0% | |
| ! | ATAGAAGACACCTTTTATGA+AGG | + | chr5_2:39805445-39805464 | Msa0769940:intron | 30.0% |
| ! | TGGAGGAGTATATATTAGTA+GGG | + | chr5_2:39805658-39805677 | Msa0769940:intron | 30.0% |
| AAATCACTATATAGAGGTCA+AGG | + | chr5_2:39805945-39805964 | Msa0769940:intron | 30.0% | |
| GAAACACAATGCAGTATTAA+CGG | + | chr5_2:39806033-39806052 | Msa0769940:intron | 30.0% | |
| AAACACAATGCAGTATTAAC+GGG | + | chr5_2:39806034-39806053 | Msa0769940:intron | 30.0% | |
| ACTATTTGTCTGTGGTAATT+GGG | + | chr5_2:39806381-39806400 | Msa0769940:intron | 30.0% | |
| ATGTGAAACTGCGTTATATT+TGG | - | chr5_2:39806552-39806571 | None:intergenic | 30.0% | |
| GCATGCAATAAAAATTACAG+AGG | - | chr5_2:39806680-39806699 | None:intergenic | 30.0% | |
| TTTATTGCATGCAAGTAAGT+AGG | + | chr5_2:39806688-39806707 | Msa0769940:intron | 30.0% | |
| TACATAGCGATTCTTCATTA+TGG | - | chr5_2:39807077-39807096 | None:intergenic | 30.0% | |
| TCAGAAAACAAAAGAGAAAG+TGG | + | chr5_2:39807162-39807181 | Msa0769940:CDS | 30.0% | |
| ATTTGGAAGAAGCAAATCAA+AGG | - | chr5_2:39807321-39807340 | None:intergenic | 30.0% | |
| TAACATAAACTGGATTTCCT+AGG | + | chr5_2:39807466-39807485 | Msa0769940:three_prime_UTR | 30.0% | |
| ! | ATTTCTCCTATTTTCTTTGC+CGG | + | chr5_2:39807502-39807521 | Msa0769940:three_prime_UTR | 30.0% |
| TATTATCAGGTAAGAACTAC+CGG | - | chr5_2:39807524-39807543 | None:intergenic | 30.0% | |
| ACCTGATAATAGTTTAACCA+AGG | + | chr5_2:39807533-39807552 | Msa0769940:three_prime_UTR | 30.0% | |
| CCTGATAATAGTTTAACCAA+GGG | + | chr5_2:39807534-39807553 | Msa0769940:three_prime_UTR | 30.0% | |
| !! | CGTTTCTAAAGTGTTAAGCA+CGG | - | chr5_2:39802855-39802874 | None:intergenic | 35.0% |
| ! | GGAGATGAATTCGAATTTTG+TGG | - | chr5_2:39803035-39803054 | None:intergenic | 35.0% |
| ACTTGACTCTCACTCAAATA+AGG | + | chr5_2:39803668-39803687 | Msa0769940:intron | 35.0% | |
| TGTTCACTATTAGGGTTTCA+GGG | + | chr5_2:39803965-39803984 | Msa0769940:intron | 35.0% | |
| ! | TTCTGCTATAGCATTTTAGG+GGG | + | chr5_2:39804314-39804333 | Msa0769940:intron | 35.0% |
| AAAAACAGGAGCAAGAAAAG+AGG | - | chr5_2:39804543-39804562 | None:intergenic | 35.0% | |
| !! | CGTGTGTTCCTTTTAAAAAC+AGG | - | chr5_2:39804557-39804576 | None:intergenic | 35.0% |
| TTCTTGTCAGTACGCTATAA+TGG | - | chr5_2:39804736-39804755 | None:intergenic | 35.0% | |
| ! | GGGCATTTTGCTTTAATAGT+CGG | + | chr5_2:39804765-39804784 | Msa0769940:intron | 35.0% |
| TGAATGTAGATAGGTACTCA+TGG | + | chr5_2:39804808-39804827 | Msa0769940:intron | 35.0% | |
| AACTGCTTATGTTACCTTCA+AGG | + | chr5_2:39805100-39805119 | Msa0769940:CDS | 35.0% | |
| GAGGATAGCGTATTAAGTAA+TGG | - | chr5_2:39805173-39805192 | None:intergenic | 35.0% | |
| !! | AAGTGTCACTTAATTTAGGG+AGG | - | chr5_2:39805192-39805211 | None:intergenic | 35.0% |
| !! | GTCATTTAATTTGTGACTGG+AGG | + | chr5_2:39805641-39805660 | Msa0769940:intron | 35.0% |
| ! | CTGGAGGAGTATATATTAGT+AGG | + | chr5_2:39805657-39805676 | Msa0769940:intron | 35.0% |
| TAGTGATATCTGAGGACAAT+TGG | - | chr5_2:39805878-39805897 | None:intergenic | 35.0% | |
| ACTCTCAATAGTGATATCTG+AGG | - | chr5_2:39805886-39805905 | None:intergenic | 35.0% | |
| CAAGGTAAAACTACAGGATT+TGG | + | chr5_2:39805963-39805982 | Msa0769940:intron | 35.0% | |
| !! | TGTTCCATAACGGATTACAT+TGG | + | chr5_2:39805989-39806008 | Msa0769940:intron | 35.0% |
| TCCAAAAGGCTGAATATTTC+AGG | - | chr5_2:39806015-39806034 | None:intergenic | 35.0% | |
| TACTGCATTGTGTTTCCAAA+AGG | - | chr5_2:39806029-39806048 | None:intergenic | 35.0% | |
| ! | TTCACTAGTCTCTCTATTTG+TGG | + | chr5_2:39806124-39806143 | Msa0769940:intron | 35.0% |
| ! | AACTTTTCCTTTTACTGCTC+TGG | + | chr5_2:39806199-39806218 | Msa0769940:intron | 35.0% |
| TTTCTATCCAGAGCAGTAAA+AGG | - | chr5_2:39806209-39806228 | None:intergenic | 35.0% | |
| ! | AGGACTATCGAAATTTTAGG+CGG | - | chr5_2:39806250-39806269 | None:intergenic | 35.0% |
| ! | TGCAGGACTATCGAAATTTT+AGG | - | chr5_2:39806253-39806272 | None:intergenic | 35.0% |
| CATATTCAATCATGTACTGC+AGG | - | chr5_2:39806270-39806289 | None:intergenic | 35.0% | |
| CCTAGAAAGAAACATCTAGT+GGG | - | chr5_2:39806357-39806376 | None:intergenic | 35.0% | |
| ACCTAGAAAGAAACATCTAG+TGG | - | chr5_2:39806358-39806377 | None:intergenic | 35.0% | |
| GACTATTTGTCTGTGGTAAT+TGG | + | chr5_2:39806380-39806399 | Msa0769940:intron | 35.0% | |
| AACGCAGTTTCACATATTTC+AGG | + | chr5_2:39806557-39806576 | Msa0769940:intron | 35.0% | |
| ACGCAGTTTCACATATTTCA+GGG | + | chr5_2:39806558-39806577 | Msa0769940:intron | 35.0% | |
| ! | TGCAAGTAAGTAGGCTATTT+TGG | + | chr5_2:39806697-39806716 | Msa0769940:intron | 35.0% |
| GTAAGTGAAAGTAAAACTCC+TGG | + | chr5_2:39806746-39806765 | Msa0769940:CDS | 35.0% | |
| TTTGCCTAAGATAAAGCCTT+TGG | - | chr5_2:39806825-39806844 | None:intergenic | 35.0% | |
| CATCTGTTGACCAAAAACTT+GGG | + | chr5_2:39806915-39806934 | Msa0769940:CDS | 35.0% | |
| AGAAGTGGATCAAAAGTTTC+TGG | + | chr5_2:39806988-39807007 | Msa0769940:CDS | 35.0% | |
| AAGAATCGCTATGTACTTAC+TGG | + | chr5_2:39807082-39807101 | Msa0769940:CDS | 35.0% | |
| AGAATCGCTATGTACTTACT+GGG | + | chr5_2:39807083-39807102 | Msa0769940:CDS | 35.0% | |
| ! | TGCTTTTAACAGGGTTTCTA+AGG | + | chr5_2:39807123-39807142 | Msa0769940:CDS | 35.0% |
| ATTGGATGTGAATGAACGAT+AGG | + | chr5_2:39807405-39807424 | Msa0769940:three_prime_UTR | 35.0% | |
| CCCTTGGTTAAACTATTATC+AGG | - | chr5_2:39807537-39807556 | None:intergenic | 35.0% | |
| TTCGAATTCATCTCCGATGT+CGG | + | chr5_2:39803040-39803059 | Msa0769940:exon | 40.0% | |
| ! | GGTATTGAATGGTGATAAGC+TGG | + | chr5_2:39803487-39803506 | Msa0769940:intron | 40.0% |
| ATATTGGAATTGCATAGCGG+TGG | + | chr5_2:39803843-39803862 | Msa0769940:intron | 40.0% | |
| !! | ATTTTAGCAGCCGGTAATTG+CGG | + | chr5_2:39803914-39803933 | Msa0769940:intron | 40.0% |
| CCTAATAGTGAACACAGTAG+GGG | - | chr5_2:39803959-39803978 | None:intergenic | 40.0% | |
| CCCTAATAGTGAACACAGTA+GGG | - | chr5_2:39803960-39803979 | None:intergenic | 40.0% | |
| CCCTACTGTGTTCACTATTA+GGG | + | chr5_2:39803957-39803976 | Msa0769940:intron | 40.0% | |
| ACCCTAATAGTGAACACAGT+AGG | - | chr5_2:39803961-39803980 | None:intergenic | 40.0% | |
| GTGTTCACTATTAGGGTTTC+AGG | + | chr5_2:39803964-39803983 | Msa0769940:intron | 40.0% | |
| AGGAAGGAGGTAAAAACCTT+AGG | - | chr5_2:39804523-39804542 | None:intergenic | 40.0% | |
| !! | GGAAACGTTGCTGACTTTAA+CGG | - | chr5_2:39804880-39804899 | None:intergenic | 40.0% |
| TAAAGTCAGCAACGTTTCCT+TGG | + | chr5_2:39804881-39804900 | Msa0769940:CDS | 40.0% | |
| AAAGTCAGCAACGTTTCCTT+GGG | + | chr5_2:39804882-39804901 | Msa0769940:CDS | 40.0% | |
| TTGCATATGTTGAACTACGG+AGG | + | chr5_2:39804952-39804971 | Msa0769940:CDS | 40.0% | |
| CAGTTACTACTTACTGCACT+TGG | + | chr5_2:39804976-39804995 | Msa0769940:intron | 40.0% | |
| ATATGGGACACACTAACTAG+TGG | - | chr5_2:39805827-39805846 | None:intergenic | 40.0% | |
| AGAGGTCAAGGTAAAACTAC+AGG | + | chr5_2:39805957-39805976 | Msa0769940:intron | 40.0% | |
| ! | GATTTGGTCGTGTTCCATAA+CGG | + | chr5_2:39805979-39805998 | Msa0769940:intron | 40.0% |
| ! | GCCTGAAATATTCAGCCTTT+TGG | + | chr5_2:39806011-39806030 | Msa0769940:intron | 40.0% |
| CTCTATTTGTGGAGACACAT+TGG | + | chr5_2:39806135-39806154 | Msa0769940:intron | 40.0% | |
| CCCACTAGATGTTTCTTTCT+AGG | + | chr5_2:39806354-39806373 | Msa0769940:intron | 40.0% | |
| TAGGTGAGACTATTTGTCTG+TGG | + | chr5_2:39806373-39806392 | Msa0769940:intron | 40.0% | |
| AAGAATAGCCACCTATGGTA+TGG | + | chr5_2:39806404-39806423 | Msa0769940:intron | 40.0% | |
| AGAATAGCCACCTATGGTAT+GGG | + | chr5_2:39806405-39806424 | Msa0769940:intron | 40.0% | |
| ! | AATTACAGAGGGTCTAAGAC+AGG | - | chr5_2:39806668-39806687 | None:intergenic | 40.0% |
| AGTGAAAGTAAAACTCCTGG+TGG | + | chr5_2:39806749-39806768 | Msa0769940:CDS | 40.0% | |
| GCATCTGTTGACCAAAAACT+TGG | + | chr5_2:39806914-39806933 | Msa0769940:CDS | 40.0% | |
| ! | TCTCACTAAGCCCAAGTTTT+TGG | - | chr5_2:39806928-39806947 | None:intergenic | 40.0% |
| CTTGGGCTTAGTGAGAAAAT+AGG | + | chr5_2:39806932-39806951 | Msa0769940:CDS | 40.0% | |
| CTTAGTGAGAAAATAGGTGC+TGG | + | chr5_2:39806938-39806957 | Msa0769940:CDS | 40.0% | |
| GAGTGATAAAGTTCGAGAAG+TGG | + | chr5_2:39806973-39806992 | Msa0769940:CDS | 40.0% | |
| AAAATCAGCATTTGCAGCTG+CGG | + | chr5_2:39807024-39807043 | Msa0769940:CDS | 40.0% | |
| GAATCGCTATGTACTTACTG+GGG | + | chr5_2:39807084-39807103 | Msa0769940:CDS | 40.0% | |
| GGTTGAAGATCAATATGCAC+AGG | + | chr5_2:39807213-39807232 | Msa0769940:CDS | 40.0% | |
| ATGAACGATAGGCAGTTACA+TGG | + | chr5_2:39807416-39807435 | Msa0769940:three_prime_UTR | 40.0% | |
| GAACTACCGGCAAAGAAAAT+AGG | - | chr5_2:39807511-39807530 | None:intergenic | 40.0% | |
| !! | GGGATGGTAGAAGTGTTCAT+AGG | + | chr5_2:39803363-39803382 | Msa0769940:intron | 45.0% |
| GTTGTCGTAGCGCACTATAT+TGG | + | chr5_2:39803827-39803846 | Msa0769940:intron | 45.0% | |
| AAAATCACAATCGCCGAAGG+TGG | - | chr5_2:39803899-39803918 | None:intergenic | 45.0% | |
| GCTAAAATCACAATCGCCGA+AGG | - | chr5_2:39803902-39803921 | None:intergenic | 45.0% | |
| !! | GCGATTGTGATTTTAGCAGC+CGG | + | chr5_2:39803905-39803924 | Msa0769940:intron | 45.0% |
| CCCCTACTGTGTTCACTATT+AGG | + | chr5_2:39803956-39803975 | Msa0769940:intron | 45.0% | |
| !! | GCTATAGCATTTTAGGGGGT+CGG | + | chr5_2:39804318-39804337 | Msa0769940:intron | 45.0% |
| CTATTCCACAATCAGACACG+TGG | - | chr5_2:39804378-39804397 | None:intergenic | 45.0% | |
| ACAGGAGCAAGAAAAGAGGA+AGG | - | chr5_2:39804539-39804558 | None:intergenic | 45.0% | |
| GAACTCTTGAATGTCCCGAT+CGG | - | chr5_2:39804913-39804932 | None:intergenic | 45.0% | |
| ! | CGAAAGGACTCTAAGAGAAG+TGG | - | chr5_2:39805012-39805031 | None:intergenic | 45.0% |
| TGTTACCTTCAAGGACTCAC+AGG | + | chr5_2:39805109-39805128 | Msa0769940:CDS | 45.0% | |
| GTTACCTTCAAGGACTCACA+GGG | + | chr5_2:39805110-39805129 | Msa0769940:CDS | 45.0% | |
| ! | TGAGACTGCTGTGTTGCTAT+CGG | + | chr5_2:39805136-39805155 | Msa0769940:CDS | 45.0% |
| CAGGCCAATGTAATCCGTTA+TGG | - | chr5_2:39805996-39806015 | None:intergenic | 45.0% | |
| TTGGGAAGAATAGCCACCTA+TGG | + | chr5_2:39806399-39806418 | Msa0769940:intron | 45.0% | |
| TGTCCTACATCCCATACCAT+AGG | - | chr5_2:39806418-39806437 | None:intergenic | 45.0% | |
| CCAGAGTTATTGTAACCGAC+AGG | - | chr5_2:39806599-39806618 | None:intergenic | 45.0% | |
| ! | CCTGTCGGTTACAATAACTC+TGG | + | chr5_2:39806596-39806615 | Msa0769940:CDS | 45.0% |
| ! | GCAGCCAAAGGCTTTATCTT+AGG | + | chr5_2:39806818-39806837 | Msa0769940:CDS | 45.0% |
| CTGAGGCTTTCGATGATAAC+TGG | - | chr5_2:39806886-39806905 | None:intergenic | 45.0% | |
| AACAGATGCAACTGTTGCTG+AGG | - | chr5_2:39806903-39806922 | None:intergenic | 45.0% | |
| CTTCATTATGGCAGAACCAG+CGG | - | chr5_2:39807065-39807084 | None:intergenic | 45.0% | |
| !!! | GGTAACGGGTGCTTTTAACA+GGG | + | chr5_2:39807114-39807133 | Msa0769940:CDS | 45.0% |
| ! | TCTAAGGCAGCTGTAGAAGT+AGG | + | chr5_2:39807139-39807158 | Msa0769940:CDS | 45.0% |
| !!! | ACTTACTGCTGCTGCTTTTG+GGG | - | chr5_2:39807251-39807270 | None:intergenic | 45.0% |
| !!! | CACTTACTGCTGCTGCTTTT+GGG | - | chr5_2:39807252-39807271 | None:intergenic | 45.0% |
| !!! | TCACTTACTGCTGCTGCTTT+TGG | - | chr5_2:39807253-39807272 | None:intergenic | 45.0% |
| ATAGTCTGGAAACAGTCTGC+AGG | - | chr5_2:39807365-39807384 | None:intergenic | 45.0% | |
| !! | TTATAAATTTATAAAATTAC+AGG | - | chr5_2:39804684-39804703 | None:intergenic | 5.0% |
| GGACAGGTGGTTAATTCACG+TGG | + | chr5_2:39802827-39802846 | Msa0769940:five_prime_UTR | 50.0% | |
| AAGCGTGTGAGTGACTACCA+TGG | - | chr5_2:39802885-39802904 | None:intergenic | 50.0% | |
| !! | GTGAACGGAAAGCGTTAGGA+TGG | - | chr5_2:39803013-39803032 | None:intergenic | 50.0% |
| !! | TGTGGTGAACGGAAAGCGTT+AGG | - | chr5_2:39803017-39803036 | None:intergenic | 50.0% |
| GAGAGAGAACTGACCGACAT+CGG | - | chr5_2:39803056-39803075 | None:intergenic | 50.0% | |
| GCTACGACAACATAGACACC+AGG | - | chr5_2:39803818-39803837 | None:intergenic | 50.0% | |
| TGGAATTGCATAGCGGTGGT+AGG | + | chr5_2:39803847-39803866 | Msa0769940:intron | 50.0% | |
| GGAATTGCATAGCGGTGGTA+GGG | + | chr5_2:39803848-39803867 | Msa0769940:intron | 50.0% | |
| ! | GGTGCTATGCGGCATTATCT+TGG | + | chr5_2:39804339-39804358 | Msa0769940:intron | 50.0% |
| CATAGCCACGTGTCTGATTG+TGG | + | chr5_2:39804370-39804389 | Msa0769940:intron | 50.0% | |
| GGAGCAAGAAAAGAGGAAGG+AGG | - | chr5_2:39804536-39804555 | None:intergenic | 50.0% | |
| TTTCCTTGGGAGCAACCGAT+CGG | + | chr5_2:39804895-39804914 | Msa0769940:CDS | 50.0% | |
| CCTACATCCCATACCATAGG+TGG | - | chr5_2:39806415-39806434 | None:intergenic | 50.0% | |
| CCACCTATGGTATGGGATGT+AGG | + | chr5_2:39806412-39806431 | Msa0769940:intron | 50.0% | |
| AGCAACAATCGTCGACCTGT+CGG | + | chr5_2:39806581-39806600 | Msa0769940:CDS | 50.0% | |
| TCAGGTGGAAGCTGGTAATC+TGG | - | chr5_2:39806624-39806643 | None:intergenic | 50.0% | |
| ACAGGTGAAACCAGGACATC+AGG | - | chr5_2:39806642-39806661 | None:intergenic | 50.0% | |
| AGAGGATGTAGTCTCCACCA+TGG | + | chr5_2:39806796-39806815 | Msa0769940:CDS | 50.0% | |
| GATAAAGCCTTTGGCTGCCA+TGG | - | chr5_2:39806816-39806835 | None:intergenic | 50.0% | |
| ATGTACTTACTGGGGCCTCT+TGG | + | chr5_2:39807092-39807111 | Msa0769940:CDS | 50.0% | |
| TGTACTTACTGGGGCCTCTT+GGG | + | chr5_2:39807093-39807112 | Msa0769940:CDS | 50.0% | |
| !! | AAAAGCACCCGTTACCCAAG+AGG | - | chr5_2:39807110-39807129 | None:intergenic | 50.0% |
| !!! | GGGTAACGGGTGCTTTTAAC+AGG | + | chr5_2:39807113-39807132 | Msa0769940:CDS | 50.0% |
| AGAACAGCAAGAGAAGCGAC+AGG | + | chr5_2:39807192-39807211 | Msa0769940:CDS | 50.0% | |
| !!! | CTTACTGCTGCTGCTTTTGG+GGG | - | chr5_2:39807250-39807269 | None:intergenic | 50.0% |
| CAAAGGATCAAACCCTGAGC+AGG | - | chr5_2:39807304-39807323 | None:intergenic | 50.0% | |
| GTACTCGCTAGCATTTCCCT+TGG | - | chr5_2:39807553-39807572 | None:intergenic | 50.0% | |
| TGCATAGCGGTGGTAGGGTT+TGG | + | chr5_2:39803853-39803872 | Msa0769940:intron | 55.0% | |
| ! | AGGGTTTGGCACGACGCTTT+TGG | + | chr5_2:39803867-39803886 | Msa0769940:intron | 55.0% |
| ! | CTTTTGGCCCAAGCCACCTT+CGG | + | chr5_2:39803883-39803902 | Msa0769940:intron | 55.0% |
| ACAATCGCCGAAGGTGGCTT+GGG | - | chr5_2:39803893-39803912 | None:intergenic | 55.0% | |
| !! | TTTAGGGGGTCGGTGCTATG+CGG | + | chr5_2:39804328-39804347 | Msa0769940:intron | 55.0% |
| TTCCTTGGGAGCAACCGATC+GGG | + | chr5_2:39804896-39804915 | Msa0769940:CDS | 55.0% | |
| AGCTCCCTGTGAGTCCTTGA+AGG | - | chr5_2:39805117-39805136 | None:intergenic | 55.0% | |
| GGTGAAACCAGGACATCAGG+TGG | - | chr5_2:39806639-39806658 | None:intergenic | 55.0% | |
| ACAGGCTCACAGGTGAAACC+AGG | - | chr5_2:39806650-39806669 | None:intergenic | 55.0% | |
| ! | AGGGTCTAAGACAGGCTCAC+AGG | - | chr5_2:39806660-39806679 | None:intergenic | 55.0% |
| AAAGCAGAGTCAGCACCACC+AGG | - | chr5_2:39806767-39806786 | None:intergenic | 55.0% | |
| !! | GTGGTGCTGACTCTGCTTTG+CGG | + | chr5_2:39806768-39806787 | Msa0769940:CDS | 55.0% |
| !! | TGCTGACTCTGCTTTGCGGA+AGG | + | chr5_2:39806772-39806791 | Msa0769940:CDS | 55.0% |
| AAAGCCTTTGGCTGCCATGG+TGG | - | chr5_2:39806813-39806832 | None:intergenic | 55.0% | |
| GAACAGACAGTCAGTACCGC+TGG | + | chr5_2:39807046-39807065 | Msa0769940:CDS | 55.0% | |
| TACTGGGGCCTCTTGGGTAA+CGG | + | chr5_2:39807099-39807118 | Msa0769940:CDS | 55.0% | |
| !! | CTGCTTTTGGGGGCTCAGAA+AGG | - | chr5_2:39807240-39807259 | None:intergenic | 55.0% |
| ATCAAACCCTGAGCAGGAGC+AGG | - | chr5_2:39807298-39807317 | None:intergenic | 55.0% | |
| CACAATCGCCGAAGGTGGCT+TGG | - | chr5_2:39803894-39803913 | None:intergenic | 60.0% | |
| CAGCATGGGGCCGCAATTAC+CGG | - | chr5_2:39803927-39803946 | None:intergenic | 60.0% | |
| AGGGGACGCGATAGCAGCAT+GGG | - | chr5_2:39803941-39803960 | None:intergenic | 60.0% | |
| TAGGGGACGCGATAGCAGCA+TGG | - | chr5_2:39803942-39803961 | None:intergenic | 60.0% | |
| CCAGGACATCAGGTGGAAGC+TGG | - | chr5_2:39806632-39806651 | None:intergenic | 60.0% | |
| CCAGCTTCCACCTGATGTCC+TGG | + | chr5_2:39806629-39806648 | Msa0769940:CDS | 60.0% | |
| CTCTGCTTTGCGGAAGGCAG+AGG | + | chr5_2:39806778-39806797 | Msa0769940:CDS | 60.0% | |
| GTCTCCACCATGGCAGCCAA+AGG | + | chr5_2:39806806-39806825 | Msa0769940:CDS | 60.0% | |
| ACTGGGGCCTCTTGGGTAAC+GGG | + | chr5_2:39807100-39807119 | Msa0769940:CDS | 60.0% | |
| GAGCAGCAGTCTTCCAAGCC+TGG | + | chr5_2:39807271-39807290 | Msa0769940:CDS | 60.0% | |
| GGGGACGCGATAGCAGCATG+GGG | - | chr5_2:39803940-39803959 | None:intergenic | 65.0% | |
| GTCCCGATCGGTTGCTCCCA+AGG | - | chr5_2:39804901-39804920 | None:intergenic | 65.0% | |
| AGCAGGAGCAGGACCAGGCT+TGG | - | chr5_2:39807287-39807306 | None:intergenic | 65.0% | |
| CCTGGTCCTGCTCCTGCTCA+GGG | + | chr5_2:39807289-39807308 | Msa0769940:CDS | 65.0% | |
| GCCTGGTCCTGCTCCTGCTC+AGG | + | chr5_2:39807288-39807307 | Msa0769940:CDS | 70.0% | |
| CCCTGAGCAGGAGCAGGACC+AGG | - | chr5_2:39807292-39807311 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 39802817 | 39807572 | 39802817 | ID=Msa0769940;Name=Msa0769940 |
| chr5_2 | mRNA | 39802817 | 39807572 | 39802817 | ID=Msa0769940-mRNA-1;Parent=Msa0769940;Name=Msa0769940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=239|1|1|1|1|1|5|248|281 |
| chr5_2 | exon | 39802817 | 39803061 | 39802817 | ID=Msa0769940-mRNA-1:exon:12703;Parent=Msa0769940-mRNA-1 |
| chr5_2 | exon | 39804870 | 39804973 | 39804870 | ID=Msa0769940-mRNA-1:exon:12704;Parent=Msa0769940-mRNA-1 |
| chr5_2 | exon | 39805082 | 39805157 | 39805082 | ID=Msa0769940-mRNA-1:exon:12705;Parent=Msa0769940-mRNA-1 |
| chr5_2 | exon | 39806579 | 39806659 | 39806579 | ID=Msa0769940-mRNA-1:exon:12706;Parent=Msa0769940-mRNA-1 |
| chr5_2 | exon | 39806746 | 39807572 | 39806746 | ID=Msa0769940-mRNA-1:exon:12707;Parent=Msa0769940-mRNA-1 |
| chr5_2 | five_prime_UTR | 39802817 | 39803055 | 39802817 | ID=Msa0769940-mRNA-1:five_prime_utr;Parent=Msa0769940-mRNA-1 |
| chr5_2 | CDS | 39803056 | 39803061 | 39803056 | ID=Msa0769940-mRNA-1:cds;Parent=Msa0769940-mRNA-1 |
| chr5_2 | CDS | 39804870 | 39804973 | 39804870 | ID=Msa0769940-mRNA-1:cds;Parent=Msa0769940-mRNA-1 |
| chr5_2 | CDS | 39805082 | 39805157 | 39805082 | ID=Msa0769940-mRNA-1:cds;Parent=Msa0769940-mRNA-1 |
| chr5_2 | CDS | 39806579 | 39806659 | 39806579 | ID=Msa0769940-mRNA-1:cds;Parent=Msa0769940-mRNA-1 |
| chr5_2 | CDS | 39806746 | 39807324 | 39806746 | ID=Msa0769940-mRNA-1:cds;Parent=Msa0769940-mRNA-1 |
| chr5_2 | three_prime_UTR | 39807325 | 39807572 | 39807325 | ID=Msa0769940-mRNA-1:three_prime_utr;Parent=Msa0769940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
