Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802980 | XP_024640259.1 | 96.099 | 282 | 10 | 1 | 1 | 281 | 1 | 282 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802980 | sp|Q9LFD5|BPA1_ARATH | 62.393 | 234 | 80 | 4 | 3 | 236 | 5 | 230 | 1.90e-96 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802980 | A0A396HQQ7 | 96.099 | 282 | 10 | 1 | 1 | 281 | 1 | 282 | 0.0 | 537 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0720160 | Msa0802980 | 0.908468 | 1.654943e-81 | -8.615850e-47 |
| Msa0769940 | Msa0802980 | 0.899279 | 2.319979e-77 | -8.615850e-47 |
| Msa0802980 | Msa1357620 | 0.843408 | 1.427327e-58 | -8.615850e-47 |
| Msa0802980 | Msa1457620 | 0.806872 | 6.659923e-50 | -8.615850e-47 |
| Msa0272300 | Msa0802980 | 0.800675 | 1.289741e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802980 | MtrunA17_Chr5g0410831 | 96.099 | 282 | 10 | 1 | 1 | 281 | 1 | 282 | 0.0 | 537 |
| Msa0802980 | MtrunA17_Chr8g0366351 | 79.715 | 281 | 55 | 1 | 1 | 281 | 1 | 279 | 8.65e-159 | 442 |
| Msa0802980 | MtrunA17_Chr5g0410821 | 95.455 | 154 | 7 | 0 | 113 | 266 | 1 | 154 | 6.61e-100 | 289 |
| Msa0802980 | MtrunA17_Chr1g0161591 | 56.977 | 258 | 99 | 3 | 3 | 253 | 31 | 283 | 1.41e-94 | 281 |
| Msa0802980 | MtrunA17_Chr8g0392141 | 56.274 | 263 | 104 | 2 | 3 | 258 | 31 | 289 | 3.03e-94 | 280 |
| Msa0802980 | MtrunA17_Chr7g0253621 | 45.276 | 254 | 121 | 3 | 1 | 238 | 1 | 252 | 6.03e-64 | 201 |
| Msa0802980 | MtrunA17_Chr5g0416421 | 39.419 | 241 | 125 | 3 | 6 | 230 | 10 | 245 | 3.10e-47 | 158 |
| Msa0802980 | MtrunA17_Chr7g0217131 | 33.077 | 260 | 126 | 8 | 5 | 230 | 7 | 252 | 3.34e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802980 | AT4G17720.1 | 68.773 | 269 | 81 | 2 | 1 | 266 | 1 | 269 | 1.15e-125 | 360 |
| Msa0802980 | AT5G46870.2 | 65.000 | 280 | 89 | 3 | 1 | 271 | 1 | 280 | 4.72e-114 | 330 |
| Msa0802980 | AT5G46870.1 | 65.000 | 280 | 89 | 3 | 1 | 271 | 1 | 280 | 4.72e-114 | 330 |
| Msa0802980 | AT5G16840.2 | 63.248 | 234 | 79 | 4 | 3 | 236 | 5 | 231 | 2.16e-98 | 289 |
| Msa0802980 | AT5G16840.3 | 62.288 | 236 | 81 | 4 | 1 | 236 | 1 | 228 | 2.99e-98 | 289 |
| Msa0802980 | AT5G16840.1 | 62.393 | 234 | 80 | 4 | 3 | 236 | 5 | 230 | 1.94e-97 | 287 |
| Msa0802980 | AT1G67950.3 | 53.942 | 241 | 101 | 2 | 3 | 243 | 28 | 258 | 3.21e-82 | 249 |
| Msa0802980 | AT1G67950.1 | 53.689 | 244 | 102 | 3 | 3 | 246 | 28 | 260 | 1.52e-81 | 247 |
| Msa0802980 | AT1G67950.2 | 53.689 | 244 | 102 | 3 | 3 | 246 | 29 | 261 | 1.71e-81 | 247 |
| Msa0802980 | AT5G32450.1 | 47.154 | 246 | 115 | 2 | 4 | 234 | 5 | 250 | 1.93e-65 | 206 |
| Msa0802980 | AT1G67950.4 | 52.153 | 209 | 89 | 3 | 35 | 243 | 1 | 198 | 9.08e-64 | 200 |
| Msa0802980 | AT1G14340.1 | 38.559 | 236 | 130 | 2 | 6 | 230 | 9 | 240 | 5.91e-41 | 142 |
| Msa0802980 | AT3G01210.2 | 34.583 | 240 | 135 | 3 | 7 | 228 | 9 | 244 | 6.38e-32 | 119 |
| Msa0802980 | AT3G01210.1 | 34.583 | 240 | 135 | 3 | 7 | 228 | 9 | 244 | 6.38e-32 | 119 |
Find 96 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGAAACTGTTTGTTTA+TGG | 0.141711 | 5_3:+17964419 | None:intergenic |
| TCACTTACTGCTGCTGCTTT+TGG | 0.172080 | 5_3:+17959754 | None:intergenic |
| AGAAGTGGATCAAAAGTTTC+TGG | 0.237272 | 5_3:-17960016 | Msa0802980:CDS |
| TACATAGCGATTCTTCATTA+TGG | 0.279605 | 5_3:+17959930 | None:intergenic |
| GCCTGGTCCTGCTCCTGCTC+AGG | 0.286119 | 5_3:-17959716 | Msa0802980:CDS |
| CCCTTGGTTAAACTATTATC+AGG | 0.295974 | 5_3:+17959470 | None:intergenic |
| CTGAGGCTTTCGATGATAAC+TGG | 0.317547 | 5_3:+17960121 | None:intergenic |
| GCAGCCAAAGGCTTTATCTT+AGG | 0.324517 | 5_3:-17960186 | Msa0802980:CDS |
| AAGAATCGCTATGTACTTAC+TGG | 0.334978 | 5_3:-17959922 | Msa0802980:CDS |
| ACTGGGGCCTCTTGGGTAAC+GGG | 0.340405 | 5_3:-17959904 | Msa0802980:CDS |
| CTTGGGCTTAGTGAGAAAAT+AGG | 0.358546 | 5_3:-17960072 | Msa0802980:CDS |
| GAACTACCGGCAAAGAAAAT+AGG | 0.369265 | 5_3:+17959496 | None:intergenic |
| TCAGGTGGAAGCTGGTAATC+TGG | 0.379435 | 5_3:+17960383 | None:intergenic |
| GGAAACGTTGCTGACTTTAA+CGG | 0.389154 | 5_3:+17962153 | None:intergenic |
| TGTACTTACTGGGGCCTCTT+GGG | 0.389213 | 5_3:-17959911 | Msa0802980:CDS |
| AAGAAAATTAAACAGCAAAT+TGG | 0.399845 | 5_3:+17959564 | None:intergenic |
| CCAGCTTCCACCTGATGTCC+TGG | 0.402216 | 5_3:-17960375 | Msa0802980:CDS |
| AACTGCTTATGTTACCTTCA+AGG | 0.409901 | 5_3:-17961930 | Msa0802980:CDS |
| TACTGGGGCCTCTTGGGTAA+CGG | 0.411141 | 5_3:-17959905 | Msa0802980:CDS |
| ATGGAAAGAAGAAAGTGAAT+TGG | 0.411384 | 5_3:+17964369 | None:intergenic |
| ATGTACTTACTGGGGCCTCT+TGG | 0.411693 | 5_3:-17959912 | Msa0802980:CDS |
| TTTGCCTAAGATAAAGCCTT+TGG | 0.412306 | 5_3:+17960182 | None:intergenic |
| TCAAACAAGATAAATACATT+TGG | 0.418425 | 5_3:+17959669 | None:intergenic |
| TAAAGTCAGCAACGTTTCCT+TGG | 0.428384 | 5_3:-17962149 | Msa0802980:CDS |
| TGGAAAGAAGAAAGTGAATT+GGG | 0.437955 | 5_3:+17964370 | None:intergenic |
| AAAACAAATATATAATAGTC+TGG | 0.444752 | 5_3:+17959628 | None:intergenic |
| AAAGTCAGCAACGTTTCCTT+GGG | 0.448315 | 5_3:-17962148 | Msa0802980:CDS |
| TAACATAAACTGGATTTCCT+AGG | 0.449312 | 5_3:-17959538 | Msa0802980:three_prime_UTR |
| CTCTGCTTTGCGGAAGGCAG+AGG | 0.460878 | 5_3:-17960226 | Msa0802980:CDS |
| AGCTCCCTGTGAGTCCTTGA+AGG | 0.464993 | 5_3:+17961916 | None:intergenic |
| AGCAGGAGCAGGACCAGGCT+TGG | 0.466748 | 5_3:+17959720 | None:intergenic |
| TCAGAAAACAAAAGAGAAAG+TGG | 0.468617 | 5_3:-17959842 | Msa0802980:CDS |
| ACAGGTGAAACCAGGACATC+AGG | 0.473780 | 5_3:+17960365 | None:intergenic |
| CCTGGTCCTGCTCCTGCTCA+GGG | 0.474520 | 5_3:-17959715 | Msa0802980:CDS |
| GTCCCGATCGGTTGCTCCCA+AGG | 0.478047 | 5_3:+17962132 | None:intergenic |
| GATAAAGCCTTTGGCTGCCA+TGG | 0.490356 | 5_3:+17960191 | None:intergenic |
| TTTATGGAAGAAGATTTAAG+AGG | 0.499755 | 5_3:+17964435 | None:intergenic |
| TGTGGTGAACGGTAAGCGTT+GGG | 0.500367 | 5_3:+17964346 | None:intergenic |
| CAAAGGATCAAACCCTGAGC+AGG | 0.508481 | 5_3:+17959703 | None:intergenic |
| CCCTGAGCAGGAGCAGGACC+AGG | 0.511908 | 5_3:+17959715 | None:intergenic |
| GAGCAGCAGTCTTCCAAGCC+TGG | 0.512092 | 5_3:-17959733 | Msa0802980:CDS |
| ATCAAACCCTGAGCAGGAGC+AGG | 0.514850 | 5_3:+17959709 | None:intergenic |
| GTACTCACTAGCATTTCCCT+TGG | 0.516596 | 5_3:+17959454 | None:intergenic |
| ACCGACGTTGGTGTCGGGAC+AGG | 0.517440 | 5_3:-17964546 | None:intergenic |
| TTCCTTGGGAGCAACCGATC+GGG | 0.521537 | 5_3:-17962134 | Msa0802980:CDS |
| TGTTACCTTCAAGGACTCAC+AGG | 0.527292 | 5_3:-17961921 | Msa0802980:CDS |
| TATTATCAGGTAAGAACTAC+CGG | 0.529514 | 5_3:+17959483 | None:intergenic |
| CCAGGACATCAGGTGGAAGC+TGG | 0.539426 | 5_3:+17960375 | None:intergenic |
| TGCTGACTCTGCTTTGCGGA+AGG | 0.545827 | 5_3:-17960232 | Msa0802980:CDS |
| AAAGCAGAGTCAGCACCACC+AGG | 0.550514 | 5_3:+17960240 | None:intergenic |
| TATCATACCGACGTTGGTGT+CGG | 0.552445 | 5_3:-17964552 | None:intergenic |
| TTGTGGTGAACGGTAAGCGT+TGG | 0.554082 | 5_3:+17964345 | None:intergenic |
| TTCGAATTCATCTCCGATGT+CGG | 0.555714 | 5_3:-17964320 | Msa0802980:intron |
| TTATGGAAGAAGATTTAAGA+GGG | 0.558081 | 5_3:+17964436 | None:intergenic |
| ATGAACGATAGGCAGTTACA+TGG | 0.559818 | 5_3:-17959588 | Msa0802980:three_prime_UTR |
| AGAATCGCTATGTACTTACT+GGG | 0.560460 | 5_3:-17959921 | Msa0802980:CDS |
| GTAAGTGAAAGTAAAACTCC+TGG | 0.566343 | 5_3:-17960258 | Msa0802980:CDS |
| TTTCCTTGGGAGCAACCGAT+CGG | 0.567350 | 5_3:-17962135 | Msa0802980:CDS |
| TGAGACTGCAGTGTTGCTAT+CGG | 0.569142 | 5_3:-17961894 | Msa0802980:intron |
| TCTAAGGCAGCTGTAGAAGT+AGG | 0.569408 | 5_3:-17959865 | Msa0802980:CDS |
| ATAGTCTGGAAACAGTCTGC+AGG | 0.572953 | 5_3:+17959642 | None:intergenic |
| GAGTGATAAAGTTCGAGAAG+TGG | 0.574003 | 5_3:-17960031 | Msa0802980:CDS |
| CCAGAGTTATTGTAACCGAC+AGG | 0.574661 | 5_3:+17960408 | None:intergenic |
| GTGGTGCTGACTCTGCTTTG+CGG | 0.575762 | 5_3:-17960236 | Msa0802980:CDS |
| CCTGTCGGTTACAATAACTC+TGG | 0.579610 | 5_3:-17960408 | Msa0802980:CDS |
| AAAATCAGCATTTGCAGCTG+CGG | 0.580805 | 5_3:-17959980 | Msa0802980:CDS |
| GTCTCCACCATGGCAGCCAA+AGG | 0.583043 | 5_3:-17960198 | Msa0802980:CDS |
| GAACAGACAGTCAGTACCGC+TGG | 0.585550 | 5_3:-17959958 | Msa0802980:CDS |
| ACCTGATAATAGTTTAACCA+AGG | 0.591554 | 5_3:-17959471 | Msa0802980:three_prime_UTR |
| AACAGATGCAACTGTTGCTG+AGG | 0.591922 | 5_3:+17960104 | None:intergenic |
| GGACAGGTGGTTAATTCACG+TGG | 0.594542 | 5_3:-17964530 | Msa0802980:five_prime_UTR |
| CCTGATAATAGTTTAACCAA+GGG | 0.594549 | 5_3:-17959470 | Msa0802980:three_prime_UTR |
| GAGCGAGAACTGACCGACAT+CGG | 0.595679 | 5_3:+17964307 | None:intergenic |
| ATTGGATGTGAATGAACGAT+AGG | 0.598215 | 5_3:-17959599 | Msa0802980:three_prime_UTR |
| GGTTGAAGATCAATATGCAC+AGG | 0.603498 | 5_3:-17959791 | Msa0802980:CDS |
| AGAACAGCAAGAGAAGCGAC+AGG | 0.607277 | 5_3:-17959812 | Msa0802980:CDS |
| AAAGCCTTTGGCTGCCATGG+TGG | 0.608702 | 5_3:+17960194 | None:intergenic |
| GTGAACGGTAAGCGTTGGGA+TGG | 0.610255 | 5_3:+17964350 | None:intergenic |
| ACAGGCTCACAGGTGAAACC+AGG | 0.611215 | 5_3:+17960357 | None:intergenic |
| GACGTTGGTGTCGGGACAGG+TGG | 0.611798 | 5_3:-17964543 | Msa0802980:five_prime_UTR |
| ACATTGCATATGTTGAACTA+CGG | 0.613252 | 5_3:-17962081 | Msa0802980:CDS |
| ATTTGGAAGAAGCAAATCAA+AGG | 0.615051 | 5_3:+17959686 | None:intergenic |
| TTTAGAAACGTAGAAATCCA+TGG | 0.616140 | 5_3:-17964492 | Msa0802980:five_prime_UTR |
| AAATATATAACTTAACACCT+AGG | 0.620051 | 5_3:+17959521 | None:intergenic |
| CTTCATTATGGCAGAACCAG+CGG | 0.621990 | 5_3:+17959942 | None:intergenic |
| GAACTCTTGAATGTCCCGAT+CGG | 0.630975 | 5_3:+17962120 | None:intergenic |
| CTTAGTGAGAAAATAGGTGC+TGG | 0.632545 | 5_3:-17960066 | Msa0802980:CDS |
| AAAAGCACCCGTTACCCAAG+AGG | 0.634112 | 5_3:+17959897 | None:intergenic |
| AGCAACAATCGTCGACCTGT+CGG | 0.648969 | 5_3:-17960423 | Msa0802980:CDS |
| GGTGAAACCAGGACATCAGG+TGG | 0.653918 | 5_3:+17960368 | None:intergenic |
| GTTACCTTCAAGGACTCACA+GGG | 0.654621 | 5_3:-17961920 | Msa0802980:CDS |
| TTGCATATGTTGAACTACGG+AGG | 0.697074 | 5_3:-17962078 | Msa0802980:intron |
| AGTGAAAGTAAAACTCCTGG+TGG | 0.700864 | 5_3:-17960255 | Msa0802980:CDS |
| GAATCGCTATGTACTTACTG+GGG | 0.704674 | 5_3:-17959920 | Msa0802980:CDS |
| AGAGGATGTAGTCTCCACCA+TGG | 0.712456 | 5_3:-17960208 | Msa0802980:CDS |
| AAGCGTGTGAGTGACTACCA+TGG | 0.749293 | 5_3:+17964475 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATT+TGG | - | chr5_3:17962495-17962514 | Msa0802980:intron | 0.0% |
| !! | ATTTATACTCTTAAAAAAAT+TGG | + | chr5_3:17961003-17961022 | None:intergenic | 10.0% |
| !!! | ATATTATACACAATTTTATT+TGG | + | chr5_3:17961405-17961424 | None:intergenic | 10.0% |
| !! | ATAAAATTGTGTATAATATA+AGG | - | chr5_3:17961406-17961425 | Msa0802980:intron | 10.0% |
| !! | ATATATATATATAATCACTA+CGG | - | chr5_3:17962327-17962346 | Msa0802980:intron | 10.0% |
| !!! | ATGTTATATTTGTTTTATTT+GGG | - | chr5_3:17962525-17962544 | Msa0802980:intron | 10.0% |
| !!! | TGAATTCATTTTTTTTTGTT+AGG | - | chr5_3:17959716-17959735 | Msa0802980:CDS | 15.0% |
| !! | AACAAAAAAATCAAAGAAAA+CGG | + | chr5_3:17959957-17959976 | None:intergenic | 15.0% |
| !! | ACTTAGTAATATAATATCTT+TGG | + | chr5_3:17960697-17960716 | None:intergenic | 15.0% |
| !! | TCTTAAAAAAAGGTTAAAAA+AGG | + | chr5_3:17960971-17960990 | None:intergenic | 15.0% |
| !! | GTATCAATATATAGAAATTA+GGG | + | chr5_3:17962024-17962043 | None:intergenic | 15.0% |
| !! | TGTATCAATATATAGAAATT+AGG | + | chr5_3:17962025-17962044 | None:intergenic | 15.0% |
| !!! | AAATTATATTTGTTAACTAC+TGG | - | chr5_3:17962246-17962265 | Msa0802980:intron | 15.0% |
| !! | TATATATATATAATCACTAC+GGG | - | chr5_3:17962328-17962347 | Msa0802980:intron | 15.0% |
| !!! | CATGTTATATTTGTTTTATT+TGG | - | chr5_3:17962524-17962543 | Msa0802980:intron | 15.0% |
| !!! | TGTTATATTTGTTTTATTTG+GGG | - | chr5_3:17962526-17962545 | Msa0802980:intron | 15.0% |
| !!! | GATAAATTTTTAAAGTCTTA+AGG | + | chr5_3:17962740-17962759 | None:intergenic | 15.0% |
| !! | AAGATAAAAAAGCAAATTAA+AGG | + | chr5_3:17962782-17962801 | None:intergenic | 15.0% |
| !! | ATTGAAGATAATACTAATAT+GGG | + | chr5_3:17962833-17962852 | None:intergenic | 15.0% |
| !! | AATTGAAGATAATACTAATA+TGG | + | chr5_3:17962834-17962853 | None:intergenic | 15.0% |
| !! | AACAATAATGACAAATTATA+TGG | + | chr5_3:17962910-17962929 | None:intergenic | 15.0% |
| !! | TGATTGAATATGAATATAAA+TGG | - | chr5_3:17963268-17963287 | Msa0802980:intron | 15.0% |
| !! | AAAACAAATATATAATAGTC+TGG | + | chr5_3:17964369-17964388 | None:intergenic | 15.0% |
| !!! | TATATTTGTTTTTTGCAAAT+TGG | - | chr5_3:17964377-17964396 | Msa0802980:five_prime_UTR | 15.0% |
| !! | ACAAAAAAATCAAAGAAAAC+GGG | + | chr5_3:17959956-17959975 | None:intergenic | 20.0% |
| !! | CATAGGTTGTTTATAAAATT+AGG | - | chr5_3:17960015-17960034 | Msa0802980:CDS | 20.0% |
| !! | AATATGATACTGAAATGAAA+TGG | - | chr5_3:17960038-17960057 | Msa0802980:CDS | 20.0% |
| !!! | GATCTTTTATTTATTGTTTG+AGG | - | chr5_3:17960391-17960410 | Msa0802980:CDS | 20.0% |
| !!! | ATTTATTGTTTGAGGATTTT+TGG | - | chr5_3:17960399-17960418 | Msa0802980:CDS | 20.0% |
| !!! | AAATGATATCAAGTATTGAA+TGG | - | chr5_3:17960441-17960460 | Msa0802980:intron | 20.0% |
| !! | GCATTTATACTCTTAAAAAA+AGG | + | chr5_3:17960981-17961000 | None:intergenic | 20.0% |
| !! | ATACAACATTATCCTTAAAA+GGG | + | chr5_3:17961037-17961056 | None:intergenic | 20.0% |
| !! | AATACAACATTATCCTTAAA+AGG | + | chr5_3:17961038-17961057 | None:intergenic | 20.0% |
| !! | GGTTCTTTAATTATTAACTA+TGG | - | chr5_3:17961168-17961187 | Msa0802980:intron | 20.0% |
| !! | TCTTTAATTATTAACTATGG+TGG | - | chr5_3:17961171-17961190 | Msa0802980:intron | 20.0% |
| !!! | ATGTTATGATTCTTTTAACT+TGG | - | chr5_3:17961597-17961616 | Msa0802980:intron | 20.0% |
| !! | TATAAAATTACAGGTAAACA+AGG | + | chr5_3:17961639-17961658 | None:intergenic | 20.0% |
| !! | AATATGATTTGAATGTAGAT+AGG | - | chr5_3:17961763-17961782 | Msa0802980:intron | 20.0% |
| !! | TAACAAAGTTTATAAACGAA+AGG | + | chr5_3:17961992-17962011 | None:intergenic | 20.0% |
| !! | TATATATATATGAAACTTCC+AGG | + | chr5_3:17962443-17962462 | None:intergenic | 20.0% |
| !! | TTGAATATGAATATAAATGG+AGG | - | chr5_3:17963271-17963290 | Msa0802980:intron | 20.0% |
| !! | CAAAAATTTACATGTTTGTA+AGG | + | chr5_3:17963713-17963732 | None:intergenic | 20.0% |
| !! | TCAAACAAGATAAATACATT+TGG | + | chr5_3:17964328-17964347 | None:intergenic | 20.0% |
| !! | AAGAAAATTAAACAGCAAAT+TGG | + | chr5_3:17964433-17964452 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTGTAACATAAAC+TGG | - | chr5_3:17964446-17964465 | Msa0802980:five_prime_UTR | 20.0% |
| !! | AAATATATAACTTAACACCT+AGG | + | chr5_3:17964476-17964495 | None:intergenic | 20.0% |
| ! | TTATGGAAGAAGATTTAAGA+GGG | + | chr5_3:17959561-17959580 | None:intergenic | 25.0% |
| ! | TTTATGGAAGAAGATTTAAG+AGG | + | chr5_3:17959562-17959581 | None:intergenic | 25.0% |
| ! | AAGAAGAAACTGTTTGTTTA+TGG | + | chr5_3:17959578-17959597 | None:intergenic | 25.0% |
| ! | TTCTGACAATTAATTTCCTT+TGG | - | chr5_3:17959745-17959764 | Msa0802980:CDS | 25.0% |
| ! | ATGAACGTATATTTAGTGTT+TGG | - | chr5_3:17959777-17959796 | Msa0802980:CDS | 25.0% |
| ! | TATTTAGTGTTTGGTATCTT+AGG | - | chr5_3:17959786-17959805 | Msa0802980:CDS | 25.0% |
| !!! | TTACGATTCTTGTTTTCAAT+TGG | - | chr5_3:17959855-17959874 | Msa0802980:CDS | 25.0% |
| ! | CAAAATGCTTGAATACTTAT+CGG | + | chr5_3:17960205-17960224 | None:intergenic | 25.0% |
| !!! | TTGGTAATGGAAGAATTAAT+TGG | - | chr5_3:17960418-17960437 | Msa0802980:CDS | 25.0% |
| ! | GTCAAGTATTAGTATGAATA+AGG | + | chr5_3:17960620-17960639 | None:intergenic | 25.0% |
| ! | AAAGGTTAAAAAAGGAATTG+AGG | + | chr5_3:17960963-17960982 | None:intergenic | 25.0% |
| ! | GCAATAAAACTTAAAAAGAG+AGG | + | chr5_3:17961137-17961156 | None:intergenic | 25.0% |
| !!! | ATTTTTAGACATTGCAATAG+CGG | - | chr5_3:17961252-17961271 | Msa0802980:intron | 25.0% |
| !! | TATTCTGCTATAGCATTTTA+GGG | - | chr5_3:17961276-17961295 | Msa0802980:intron | 25.0% |
| ! | TGATATCATATCATCATCAT+AGG | + | chr5_3:17961372-17961391 | None:intergenic | 25.0% |
| !!! | ATGACTTATCCTTTTAAAAG+AGG | - | chr5_3:17961443-17961462 | Msa0802980:intron | 25.0% |
| !! | TTTAGGTAACCTCTTTTAAA+AGG | + | chr5_3:17961455-17961474 | None:intergenic | 25.0% |
| ! | TACTGACAAGAAATACTATA+TGG | - | chr5_3:17961708-17961727 | Msa0802980:intron | 25.0% |
| ! | ACTGACAAGAAATACTATAT+GGG | - | chr5_3:17961709-17961728 | Msa0802980:intron | 25.0% |
| !! | AAGAGTTCTTTTCTTTTTCT+GGG | - | chr5_3:17961889-17961908 | Msa0802980:intron | 25.0% |
| !!! | CTTAAGTGTCACTTAATTTA+GGG | + | chr5_3:17962159-17962178 | None:intergenic | 25.0% |
| ! | ATGCATAGTAGAGTATAATA+GGG | - | chr5_3:17962289-17962308 | Msa0802980:intron | 25.0% |
| !!! | AATGTCATTTAATTTGTGAC+TGG | - | chr5_3:17962628-17962647 | Msa0802980:intron | 25.0% |
| ! | TCTCATAAATCACTATATAG+AGG | - | chr5_3:17962929-17962948 | Msa0802980:intron | 25.0% |
| ! | AATAAGAGTTTCAGTAATGT+GGG | + | chr5_3:17963085-17963104 | None:intergenic | 25.0% |
| ! | TAATAAGAGTTTCAGTAATG+TGG | + | chr5_3:17963086-17963105 | None:intergenic | 25.0% |
| ! | ATAGAAACATCTTCTAACAA+TGG | - | chr5_3:17963212-17963231 | Msa0802980:intron | 25.0% |
| ! | TTCTAATGTAACAGTATGTT+TGG | - | chr5_3:17963445-17963464 | Msa0802980:intron | 25.0% |
| ! | CATGCAATAAAAATTACAGA+GGG | + | chr5_3:17963669-17963688 | None:intergenic | 25.0% |
| !! | ACAAACATGTAAATTTTTGC+AGG | - | chr5_3:17963714-17963733 | Msa0802980:intron | 25.0% |
| TTTAGAAACGTAGAAATCCA+TGG | - | chr5_3:17959502-17959521 | Msa0802980:three_prime_UTR | 30.0% | |
| TGGAAAGAAGAAAGTGAATT+GGG | + | chr5_3:17959627-17959646 | None:intergenic | 30.0% | |
| ATGGAAAGAAGAAAGTGAAT+TGG | + | chr5_3:17959628-17959647 | None:intergenic | 30.0% | |
| ! | AATTCGAATTTTGTGGTGAA+CGG | + | chr5_3:17959662-17959681 | None:intergenic | 30.0% |
| CGTTCATAATCAAAATCCAA+AGG | + | chr5_3:17959764-17959783 | None:intergenic | 30.0% | |
| !!! | AAAACTGCTACGTTTTTTCT+TGG | - | chr5_3:17959887-17959906 | Msa0802980:CDS | 30.0% |
| !! | ACCCTTTTTGATTATGTGAA+TGG | - | chr5_3:17959977-17959996 | Msa0802980:CDS | 30.0% |
| CCCATTCACATAATCAAAAA+GGG | + | chr5_3:17959981-17960000 | None:intergenic | 30.0% | |
| !! | CCCTTTTTGATTATGTGAAT+GGG | - | chr5_3:17959978-17959997 | Msa0802980:CDS | 30.0% |
| TCCCATTCACATAATCAAAA+AGG | + | chr5_3:17959982-17960001 | None:intergenic | 30.0% | |
| !! | TTTTGATTATGTGAATGGGA+TGG | - | chr5_3:17959982-17960001 | Msa0802980:CDS | 30.0% |
| TCATCATCTGAAAACATTCA+AGG | - | chr5_3:17960062-17960081 | Msa0802980:CDS | 30.0% | |
| TGCTCAGTGAAGTAATTAAA+TGG | + | chr5_3:17960277-17960296 | None:intergenic | 30.0% | |
| TTTCGGTATTATGGTAGTAT+GGG | + | chr5_3:17960301-17960320 | None:intergenic | 30.0% | |
| ATTTCGGTATTATGGTAGTA+TGG | + | chr5_3:17960302-17960321 | None:intergenic | 30.0% | |
| ATTACTACCAACAGGTATTT+CGG | + | chr5_3:17960318-17960337 | None:intergenic | 30.0% | |
| ATCTCTTAATTACTACCAAC+AGG | + | chr5_3:17960326-17960345 | None:intergenic | 30.0% | |
| !!! | TGTTTGAGGATTTTTGGTAA+TGG | - | chr5_3:17960405-17960424 | Msa0802980:CDS | 30.0% |
| !! | TCTAGCAACTTTAAAATACC+TGG | - | chr5_3:17960762-17960781 | Msa0802980:intron | 30.0% |
| ACTATATTGGAATTGCATAG+CGG | - | chr5_3:17960805-17960824 | Msa0802980:intron | 30.0% | |
| ! | TGTCAATTCAAACCCTTTTA+AGG | - | chr5_3:17961022-17961041 | Msa0802980:intron | 30.0% |
| !! | GTTTTATTGCTTTGTAGCTT+AGG | - | chr5_3:17961147-17961166 | Msa0802980:intron | 30.0% |
| ! | CTATTCTGCTATAGCATTTT+AGG | - | chr5_3:17961275-17961294 | Msa0802980:intron | 30.0% |
| ! | ATTCTGCTATAGCATTTTAG+GGG | - | chr5_3:17961277-17961296 | Msa0802980:intron | 30.0% |
| ACCTAAAGATGATAAACCTA+AGG | - | chr5_3:17961468-17961487 | Msa0802980:intron | 30.0% | |
| ACCTTAGGTTTATCATCTTT+AGG | + | chr5_3:17961472-17961491 | None:intergenic | 30.0% | |
| !!! | TTCTTGCTCCTGTTTTTAAA+AGG | - | chr5_3:17961510-17961529 | Msa0802980:intron | 30.0% |
| ! | TGACTTTAACGGTTTTTATC+TGG | + | chr5_3:17961833-17961852 | None:intergenic | 30.0% |
| ! | CAAGAGTTCTTTTCTTTTTC+TGG | - | chr5_3:17961888-17961907 | Msa0802980:intron | 30.0% |
| ! | AGAGTTCTTTTCTTTTTCTG+GGG | - | chr5_3:17961890-17961909 | Msa0802980:intron | 30.0% |
| ACATTGCATATGTTGAACTA+CGG | - | chr5_3:17961913-17961932 | Msa0802980:CDS | 30.0% | |
| !! | CCTTAAGTGTCACTTAATTT+AGG | + | chr5_3:17962160-17962179 | None:intergenic | 30.0% |
| CCTAAATTAAGTGACACTTA+AGG | - | chr5_3:17962157-17962176 | Msa0802980:CDS | 30.0% | |
| GATGCATAGTAGAGTATAAT+AGG | - | chr5_3:17962288-17962307 | Msa0802980:intron | 30.0% | |
| TTGTCAGAATAATAGTGTTC+AGG | - | chr5_3:17962370-17962389 | Msa0802980:intron | 30.0% | |
| TGTCAGAATAATAGTGTTCA+GGG | - | chr5_3:17962371-17962390 | Msa0802980:intron | 30.0% | |
| ! | TGGAGGAGTATATATTAGTA+GGG | - | chr5_3:17962648-17962667 | Msa0802980:intron | 30.0% |
| AAATCACTATATAGAGGTCA+AGG | - | chr5_3:17962935-17962954 | Msa0802980:intron | 30.0% | |
| ACTATTTGTCTGTGGTAATT+GGG | - | chr5_3:17963371-17963390 | Msa0802980:intron | 30.0% | |
| ATGTGAAACTGCGTTATATT+TGG | + | chr5_3:17963542-17963561 | None:intergenic | 30.0% | |
| GCATGCAATAAAAATTACAG+AGG | + | chr5_3:17963670-17963689 | None:intergenic | 30.0% | |
| TTTATTGCATGCAAGTAAGT+AGG | - | chr5_3:17963678-17963697 | Msa0802980:intron | 30.0% | |
| TACATAGCGATTCTTCATTA+TGG | + | chr5_3:17964067-17964086 | None:intergenic | 30.0% | |
| TCAGAAAACAAAAGAGAAAG+TGG | - | chr5_3:17964152-17964171 | Msa0802980:intron | 30.0% | |
| ATTTGGAAGAAGCAAATCAA+AGG | + | chr5_3:17964311-17964330 | None:intergenic | 30.0% | |
| TAACATAAACTGGATTTCCT+AGG | - | chr5_3:17964456-17964475 | Msa0802980:five_prime_UTR | 30.0% | |
| ! | ATTTCTCCTATTTTCTTTGC+CGG | - | chr5_3:17964492-17964511 | Msa0802980:five_prime_UTR | 30.0% |
| TATTATCAGGTAAGAACTAC+CGG | + | chr5_3:17964514-17964533 | None:intergenic | 30.0% | |
| ACCTGATAATAGTTTAACCA+AGG | - | chr5_3:17964523-17964542 | Msa0802980:five_prime_UTR | 30.0% | |
| CCTGATAATAGTTTAACCAA+GGG | - | chr5_3:17964524-17964543 | Msa0802980:five_prime_UTR | 30.0% | |
| ! | GGAGATGAATTCGAATTTTG+TGG | + | chr5_3:17959669-17959688 | None:intergenic | 35.0% |
| !! | CAAGGTTGTGTTGTTTAGTT+CGG | - | chr5_3:17960080-17960099 | Msa0802980:CDS | 35.0% |
| ATGCTTGAATACTTATCGGT+GGG | + | chr5_3:17960201-17960220 | None:intergenic | 35.0% | |
| AATGCTTGAATACTTATCGG+TGG | + | chr5_3:17960202-17960221 | None:intergenic | 35.0% | |
| !!! | TCGTGATAGCTAGCTTTTAA+GGG | + | chr5_3:17960236-17960255 | None:intergenic | 35.0% |
| CAACAGGTATTTCGGTATTA+TGG | + | chr5_3:17960310-17960329 | None:intergenic | 35.0% | |
| CATAATACCGAAATACCTGT+TGG | - | chr5_3:17960308-17960327 | Msa0802980:intron | 35.0% | |
| ! | AGTATTGAATGGTGATAAGC+TGG | - | chr5_3:17960452-17960471 | Msa0802980:intron | 35.0% |
| ACTTGACTCTCACTCAAATA+AGG | - | chr5_3:17960633-17960652 | Msa0802980:intron | 35.0% | |
| TGTTCACTATTAGGGTTTCA+GGG | - | chr5_3:17960930-17960949 | Msa0802980:intron | 35.0% | |
| ! | TTCTGCTATAGCATTTTAGG+GGG | - | chr5_3:17961278-17961297 | Msa0802980:intron | 35.0% |
| AAAAACAGGAGCAAGAAAAG+AGG | + | chr5_3:17961507-17961526 | None:intergenic | 35.0% | |
| !! | CGTGTGTTCCTTTTAAAAAC+AGG | + | chr5_3:17961521-17961540 | None:intergenic | 35.0% |
| TTCTTGTCAGTACGCTATAA+TGG | + | chr5_3:17961700-17961719 | None:intergenic | 35.0% | |
| ! | GGGCATTTTGCTTTAATAGT+CGG | - | chr5_3:17961729-17961748 | Msa0802980:intron | 35.0% |
| TGAATGTAGATAGGTACTCA+TGG | - | chr5_3:17961772-17961791 | Msa0802980:intron | 35.0% | |
| AACTGCTTATGTTACCTTCA+AGG | - | chr5_3:17962064-17962083 | Msa0802980:intron | 35.0% | |
| GAGGATAGCGTATTAAGTAA+TGG | + | chr5_3:17962137-17962156 | None:intergenic | 35.0% | |
| !! | AAGTGTCACTTAATTTAGGG+AGG | + | chr5_3:17962156-17962175 | None:intergenic | 35.0% |
| GAAAAAACTTCGAATTGGGA+GGG | + | chr5_3:17962421-17962440 | None:intergenic | 35.0% | |
| CCAGGAAAAAACTTCGAATT+GGG | + | chr5_3:17962425-17962444 | None:intergenic | 35.0% | |
| TCCAGGAAAAAACTTCGAAT+TGG | + | chr5_3:17962426-17962445 | None:intergenic | 35.0% | |
| !! | GTCATTTAATTTGTGACTGG+AGG | - | chr5_3:17962631-17962650 | Msa0802980:intron | 35.0% |
| ! | CTGGAGGAGTATATATTAGT+AGG | - | chr5_3:17962647-17962666 | Msa0802980:intron | 35.0% |
| TAGTGATATCTGAGGACAAT+TGG | + | chr5_3:17962868-17962887 | None:intergenic | 35.0% | |
| ACTCTCAATAGTGATATCTG+AGG | + | chr5_3:17962876-17962895 | None:intergenic | 35.0% | |
| CAAGGTAAAACTACAGGATT+TGG | - | chr5_3:17962953-17962972 | Msa0802980:intron | 35.0% | |
| !! | TGTTCCATAACGGATTACAT+TGG | - | chr5_3:17962979-17962998 | Msa0802980:intron | 35.0% |
| TCCAAAAGGCTGAATATTTC+AGG | + | chr5_3:17963005-17963024 | None:intergenic | 35.0% | |
| TACTGCATTGTGTTTCCAAA+AGG | + | chr5_3:17963019-17963038 | None:intergenic | 35.0% | |
| ! | TTCACTAGTCTCTCTATTTG+TGG | - | chr5_3:17963114-17963133 | Msa0802980:intron | 35.0% |
| ! | AACTTTTCCTTTTACTGCTC+TGG | - | chr5_3:17963189-17963208 | Msa0802980:intron | 35.0% |
| TTTCTATCCAGAGCAGTAAA+AGG | + | chr5_3:17963199-17963218 | None:intergenic | 35.0% | |
| ! | AGGACTATCGAAATTTTAGG+TGG | + | chr5_3:17963240-17963259 | None:intergenic | 35.0% |
| ! | TGCAGGACTATCGAAATTTT+AGG | + | chr5_3:17963243-17963262 | None:intergenic | 35.0% |
| CATATTCAATCATGTACTGC+AGG | + | chr5_3:17963260-17963279 | None:intergenic | 35.0% | |
| CCTAGAAAGAAACATCTAGT+GGG | + | chr5_3:17963347-17963366 | None:intergenic | 35.0% | |
| ACCTAGAAAGAAACATCTAG+TGG | + | chr5_3:17963348-17963367 | None:intergenic | 35.0% | |
| GACTATTTGTCTGTGGTAAT+TGG | - | chr5_3:17963370-17963389 | Msa0802980:intron | 35.0% | |
| AACGCAGTTTCACATATTTC+AGG | - | chr5_3:17963547-17963566 | Msa0802980:intron | 35.0% | |
| ACGCAGTTTCACATATTTCA+GGG | - | chr5_3:17963548-17963567 | Msa0802980:intron | 35.0% | |
| ! | TGCAAGTAAGTAGGCTATTT+TGG | - | chr5_3:17963687-17963706 | Msa0802980:intron | 35.0% |
| GTAAGTGAAAGTAAAACTCC+TGG | - | chr5_3:17963736-17963755 | Msa0802980:intron | 35.0% | |
| TTTGCCTAAGATAAAGCCTT+TGG | + | chr5_3:17963815-17963834 | None:intergenic | 35.0% | |
| CATCTGTTGACCAAAAACTT+GGG | - | chr5_3:17963905-17963924 | Msa0802980:intron | 35.0% | |
| AGAAGTGGATCAAAAGTTTC+TGG | - | chr5_3:17963978-17963997 | Msa0802980:intron | 35.0% | |
| AAGAATCGCTATGTACTTAC+TGG | - | chr5_3:17964072-17964091 | Msa0802980:intron | 35.0% | |
| AGAATCGCTATGTACTTACT+GGG | - | chr5_3:17964073-17964092 | Msa0802980:intron | 35.0% | |
| ! | TGCTTTTAACAGGGTTTCTA+AGG | - | chr5_3:17964113-17964132 | Msa0802980:intron | 35.0% |
| ATTGGATGTGAATGAACGAT+AGG | - | chr5_3:17964395-17964414 | Msa0802980:five_prime_UTR | 35.0% | |
| CCCTTGGTTAAACTATTATC+AGG | + | chr5_3:17964527-17964546 | None:intergenic | 35.0% | |
| TTCGAATTCATCTCCGATGT+CGG | - | chr5_3:17959674-17959693 | Msa0802980:three_prime_UTR | 40.0% | |
| !!! | GTCGTGATAGCTAGCTTTTA+AGG | + | chr5_3:17960237-17960256 | None:intergenic | 40.0% |
| GTTGTCATAGCGCACTATAT+TGG | - | chr5_3:17960792-17960811 | Msa0802980:intron | 40.0% | |
| ATATTGGAATTGCATAGCGG+TGG | - | chr5_3:17960808-17960827 | Msa0802980:intron | 40.0% | |
| !! | ATTTTAGCAGCCGGTAATTG+TGG | - | chr5_3:17960879-17960898 | Msa0802980:intron | 40.0% |
| CCTAATAGTGAACACAGTAG+GGG | + | chr5_3:17960924-17960943 | None:intergenic | 40.0% | |
| CCCTAATAGTGAACACAGTA+GGG | + | chr5_3:17960925-17960944 | None:intergenic | 40.0% | |
| CCCTACTGTGTTCACTATTA+GGG | - | chr5_3:17960922-17960941 | Msa0802980:intron | 40.0% | |
| ACCCTAATAGTGAACACAGT+AGG | + | chr5_3:17960926-17960945 | None:intergenic | 40.0% | |
| GTGTTCACTATTAGGGTTTC+AGG | - | chr5_3:17960929-17960948 | Msa0802980:intron | 40.0% | |
| AGGAAGGAGGTAAAAACCTT+AGG | + | chr5_3:17961487-17961506 | None:intergenic | 40.0% | |
| !! | GGAAACGTTGCTGACTTTAA+CGG | + | chr5_3:17961844-17961863 | None:intergenic | 40.0% |
| TAAAGTCAGCAACGTTTCCT+TGG | - | chr5_3:17961845-17961864 | Msa0802980:intron | 40.0% | |
| AAAGTCAGCAACGTTTCCTT+GGG | - | chr5_3:17961846-17961865 | Msa0802980:intron | 40.0% | |
| TTGCATATGTTGAACTACGG+AGG | - | chr5_3:17961916-17961935 | Msa0802980:CDS | 40.0% | |
| CAGTTACTACTTACTGCACT+TGG | - | chr5_3:17961940-17961959 | Msa0802980:CDS | 40.0% | |
| TATAATCACTACGGGCCATA+TGG | - | chr5_3:17962336-17962355 | Msa0802980:intron | 40.0% | |
| TTATTCTGACAACGTCGATC+TGG | + | chr5_3:17962362-17962381 | None:intergenic | 40.0% | |
| GGAAAAAACTTCGAATTGGG+AGG | + | chr5_3:17962422-17962441 | None:intergenic | 40.0% | |
| !!! | CCCAATTCGAAGTTTTTTCC+TGG | - | chr5_3:17962422-17962441 | Msa0802980:intron | 40.0% |
| TATGGGACACACTAACTAGT+GGG | + | chr5_3:17962816-17962835 | None:intergenic | 40.0% | |
| ATATGGGACACACTAACTAG+TGG | + | chr5_3:17962817-17962836 | None:intergenic | 40.0% | |
| AGAGGTCAAGGTAAAACTAC+AGG | - | chr5_3:17962947-17962966 | Msa0802980:intron | 40.0% | |
| ! | GATTTGGTCGTGTTCCATAA+CGG | - | chr5_3:17962969-17962988 | Msa0802980:intron | 40.0% |
| ! | GCCTGAAATATTCAGCCTTT+TGG | - | chr5_3:17963001-17963020 | Msa0802980:intron | 40.0% |
| CTCTATTTGTGGAGACACAT+TGG | - | chr5_3:17963125-17963144 | Msa0802980:intron | 40.0% | |
| CCCACTAGATGTTTCTTTCT+AGG | - | chr5_3:17963344-17963363 | Msa0802980:intron | 40.0% | |
| TAGGTGAGACTATTTGTCTG+TGG | - | chr5_3:17963363-17963382 | Msa0802980:intron | 40.0% | |
| AAGAATAGCCACCTATGGTA+TGG | - | chr5_3:17963394-17963413 | Msa0802980:intron | 40.0% | |
| AGAATAGCCACCTATGGTAT+GGG | - | chr5_3:17963395-17963414 | Msa0802980:intron | 40.0% | |
| ! | AATTACAGAGGGTCTAAGAC+AGG | + | chr5_3:17963658-17963677 | None:intergenic | 40.0% |
| AGTGAAAGTAAAACTCCTGG+TGG | - | chr5_3:17963739-17963758 | Msa0802980:intron | 40.0% | |
| GCATCTGTTGACCAAAAACT+TGG | - | chr5_3:17963904-17963923 | Msa0802980:intron | 40.0% | |
| ! | TCTCACTAAGCCCAAGTTTT+TGG | + | chr5_3:17963918-17963937 | None:intergenic | 40.0% |
| CTTGGGCTTAGTGAGAAAAT+AGG | - | chr5_3:17963922-17963941 | Msa0802980:intron | 40.0% | |
| CTTAGTGAGAAAATAGGTGC+TGG | - | chr5_3:17963928-17963947 | Msa0802980:intron | 40.0% | |
| GAGTGATAAAGTTCGAGAAG+TGG | - | chr5_3:17963963-17963982 | Msa0802980:intron | 40.0% | |
| AAAATCAGCATTTGCAGCTG+CGG | - | chr5_3:17964014-17964033 | Msa0802980:intron | 40.0% | |
| GAATCGCTATGTACTTACTG+GGG | - | chr5_3:17964074-17964093 | Msa0802980:intron | 40.0% | |
| GGTTGAAGATCAATATGCAC+AGG | - | chr5_3:17964203-17964222 | Msa0802980:intron | 40.0% | |
| ATGAACGATAGGCAGTTACA+TGG | - | chr5_3:17964406-17964425 | Msa0802980:five_prime_UTR | 40.0% | |
| GAACTACCGGCAAAGAAAAT+AGG | + | chr5_3:17964501-17964520 | None:intergenic | 40.0% | |
| CCAACATGCAAACCTAGCTA+GGG | + | chr5_3:17960107-17960126 | None:intergenic | 45.0% | |
| CCTAGCTAGGTTTGCATGTT+GGG | - | chr5_3:17960105-17960124 | Msa0802980:CDS | 45.0% | |
| CTAGCTAGGTTTGCATGTTG+GGG | - | chr5_3:17960106-17960125 | Msa0802980:CDS | 45.0% | |
| GTTTGCATGTTGGGGATACA+AGG | - | chr5_3:17960114-17960133 | Msa0802980:CDS | 45.0% | |
| AGCCTTCTCTGGACAGTTAA+AGG | - | chr5_3:17960143-17960162 | Msa0802980:CDS | 45.0% | |
| GCCTTCTCTGGACAGTTAAA+GGG | - | chr5_3:17960144-17960163 | Msa0802980:CDS | 45.0% | |
| TCCCTTTAACTGTCCAGAGA+AGG | + | chr5_3:17960148-17960167 | None:intergenic | 45.0% | |
| GCTATGACAACATAGACACC+AGG | + | chr5_3:17960783-17960802 | None:intergenic | 45.0% | |
| AAAATCACAATCGCCGAAGG+TGG | + | chr5_3:17960864-17960883 | None:intergenic | 45.0% | |
| GCTAAAATCACAATCGCCGA+AGG | + | chr5_3:17960867-17960886 | None:intergenic | 45.0% | |
| !! | GCGATTGTGATTTTAGCAGC+CGG | - | chr5_3:17960870-17960889 | Msa0802980:intron | 45.0% |
| CCCCTACTGTGTTCACTATT+AGG | - | chr5_3:17960921-17960940 | Msa0802980:intron | 45.0% | |
| !! | GCTATAGCATTTTAGGGGGT+CGG | - | chr5_3:17961282-17961301 | Msa0802980:intron | 45.0% |
| CTATTCCACAATCAGACACG+TGG | + | chr5_3:17961342-17961361 | None:intergenic | 45.0% | |
| ACAGGAGCAAGAAAAGAGGA+AGG | + | chr5_3:17961503-17961522 | None:intergenic | 45.0% | |
| GAACTCTTGAATGTCCCGAT+CGG | + | chr5_3:17961877-17961896 | None:intergenic | 45.0% | |
| ! | CGAAAGGACTCTAAGAGAAG+TGG | + | chr5_3:17961976-17961995 | None:intergenic | 45.0% |
| TGTTACCTTCAAGGACTCAC+AGG | - | chr5_3:17962073-17962092 | Msa0802980:intron | 45.0% | |
| GTTACCTTCAAGGACTCACA+GGG | - | chr5_3:17962074-17962093 | Msa0802980:intron | 45.0% | |
| ! | TGAGACTGCAGTGTTGCTAT+CGG | - | chr5_3:17962100-17962119 | Msa0802980:CDS | 45.0% |
| TAATAGTGTTCAGGGCCTAG+CGG | - | chr5_3:17962379-17962398 | Msa0802980:intron | 45.0% | |
| CAGGCCAATGTAATCCGTTA+TGG | + | chr5_3:17962986-17963005 | None:intergenic | 45.0% | |
| TTGGGAAGAATAGCCACCTA+TGG | - | chr5_3:17963389-17963408 | Msa0802980:intron | 45.0% | |
| TGTCCTACATCCCATACCAT+AGG | + | chr5_3:17963408-17963427 | None:intergenic | 45.0% | |
| CCAGAGTTATTGTAACCGAC+AGG | + | chr5_3:17963589-17963608 | None:intergenic | 45.0% | |
| ! | CCTGTCGGTTACAATAACTC+TGG | - | chr5_3:17963586-17963605 | Msa0802980:intron | 45.0% |
| ! | GCAGCCAAAGGCTTTATCTT+AGG | - | chr5_3:17963808-17963827 | Msa0802980:intron | 45.0% |
| CTGAGGCTTTCGATGATAAC+TGG | + | chr5_3:17963876-17963895 | None:intergenic | 45.0% | |
| AACAGATGCAACTGTTGCTG+AGG | + | chr5_3:17963893-17963912 | None:intergenic | 45.0% | |
| CTTCATTATGGCAGAACCAG+CGG | + | chr5_3:17964055-17964074 | None:intergenic | 45.0% | |
| !!! | GGTAACGGGTGCTTTTAACA+GGG | - | chr5_3:17964104-17964123 | Msa0802980:intron | 45.0% |
| ! | TCTAAGGCAGCTGTAGAAGT+AGG | - | chr5_3:17964129-17964148 | Msa0802980:intron | 45.0% |
| !!! | ACTTACTGCTGCTGCTTTTG+GGG | + | chr5_3:17964241-17964260 | None:intergenic | 45.0% |
| !!! | CACTTACTGCTGCTGCTTTT+GGG | + | chr5_3:17964242-17964261 | None:intergenic | 45.0% |
| !!! | TCACTTACTGCTGCTGCTTT+TGG | + | chr5_3:17964243-17964262 | None:intergenic | 45.0% |
| ATAGTCTGGAAACAGTCTGC+AGG | + | chr5_3:17964355-17964374 | None:intergenic | 45.0% | |
| GTACTCACTAGCATTTCCCT+TGG | + | chr5_3:17964543-17964562 | None:intergenic | 45.0% | |
| !! | TTATAAATTTATAAAATTAC+AGG | + | chr5_3:17961648-17961667 | None:intergenic | 5.0% |
| GGACAGGTGGTTAATTCACG+TGG | - | chr5_3:17959464-17959483 | Msa0802980:three_prime_UTR | 50.0% | |
| AAGCGTGTGAGTGACTACCA+TGG | + | chr5_3:17959522-17959541 | None:intergenic | 50.0% | |
| TGTGGTGAACGGTAAGCGTT+GGG | + | chr5_3:17959651-17959670 | None:intergenic | 50.0% | |
| TTGTGGTGAACGGTAAGCGT+TGG | + | chr5_3:17959652-17959671 | None:intergenic | 50.0% | |
| !! | GGGATGGTAGAAGCGTTCAT+AGG | - | chr5_3:17959998-17960017 | Msa0802980:CDS | 50.0% |
| ! | GTTTAGTTCGGTCCCTAGCT+AGG | - | chr5_3:17960092-17960111 | Msa0802980:CDS | 50.0% |
| CCCTAGCTAGGTTTGCATGT+TGG | - | chr5_3:17960104-17960123 | Msa0802980:CDS | 50.0% | |
| CCCAACATGCAAACCTAGCT+AGG | + | chr5_3:17960108-17960127 | None:intergenic | 50.0% | |
| CAAGGTTACACAGCCTTCTC+TGG | - | chr5_3:17960132-17960151 | Msa0802980:CDS | 50.0% | |
| AAGCTAGCTATCACGACACG+AGG | - | chr5_3:17960240-17960259 | Msa0802980:CDS | 50.0% | |
| AGCTAGCTATCACGACACGA+GGG | - | chr5_3:17960241-17960260 | Msa0802980:CDS | 50.0% | |
| TGGAATTGCATAGCGGTGGT+AGG | - | chr5_3:17960812-17960831 | Msa0802980:intron | 50.0% | |
| GGAATTGCATAGCGGTGGTA+GGG | - | chr5_3:17960813-17960832 | Msa0802980:intron | 50.0% | |
| ! | GGTGCTATGCGGCATTATCT+TGG | - | chr5_3:17961303-17961322 | Msa0802980:intron | 50.0% |
| CATAGCCACGTGTCTGATTG+TGG | - | chr5_3:17961334-17961353 | Msa0802980:intron | 50.0% | |
| GGAGCAAGAAAAGAGGAAGG+AGG | + | chr5_3:17961500-17961519 | None:intergenic | 50.0% | |
| TTTCCTTGGGAGCAACCGAT+CGG | - | chr5_3:17961859-17961878 | Msa0802980:intron | 50.0% | |
| ACAACGTCGATCTGGCCATA+TGG | + | chr5_3:17962354-17962373 | None:intergenic | 50.0% | |
| GATCGCATTCCTAATCCGCT+AGG | + | chr5_3:17962397-17962416 | None:intergenic | 50.0% | |
| CCTACATCCCATACCATAGG+TGG | + | chr5_3:17963405-17963424 | None:intergenic | 50.0% | |
| CCACCTATGGTATGGGATGT+AGG | - | chr5_3:17963402-17963421 | Msa0802980:intron | 50.0% | |
| AGCAACAATCGTCGACCTGT+CGG | - | chr5_3:17963571-17963590 | Msa0802980:intron | 50.0% | |
| TCAGGTGGAAGCTGGTAATC+TGG | + | chr5_3:17963614-17963633 | None:intergenic | 50.0% | |
| ACAGGTGAAACCAGGACATC+AGG | + | chr5_3:17963632-17963651 | None:intergenic | 50.0% | |
| AGAGGATGTAGTCTCCACCA+TGG | - | chr5_3:17963786-17963805 | Msa0802980:intron | 50.0% | |
| GATAAAGCCTTTGGCTGCCA+TGG | + | chr5_3:17963806-17963825 | None:intergenic | 50.0% | |
| ATGTACTTACTGGGGCCTCT+TGG | - | chr5_3:17964082-17964101 | Msa0802980:intron | 50.0% | |
| TGTACTTACTGGGGCCTCTT+GGG | - | chr5_3:17964083-17964102 | Msa0802980:intron | 50.0% | |
| !! | AAAAGCACCCGTTACCCAAG+AGG | + | chr5_3:17964100-17964119 | None:intergenic | 50.0% |
| !!! | GGGTAACGGGTGCTTTTAAC+AGG | - | chr5_3:17964103-17964122 | Msa0802980:intron | 50.0% |
| AGAACAGCAAGAGAAGCGAC+AGG | - | chr5_3:17964182-17964201 | Msa0802980:intron | 50.0% | |
| !!! | CTTACTGCTGCTGCTTTTGG+GGG | + | chr5_3:17964240-17964259 | None:intergenic | 50.0% |
| CAAAGGATCAAACCCTGAGC+AGG | + | chr5_3:17964294-17964313 | None:intergenic | 50.0% | |
| !! | GTGAACGGTAAGCGTTGGGA+TGG | + | chr5_3:17959647-17959666 | None:intergenic | 55.0% |
| GAGCGAGAACTGACCGACAT+CGG | + | chr5_3:17959690-17959709 | None:intergenic | 55.0% | |
| TGCATAGCGGTGGTAGGGTT+TGG | - | chr5_3:17960818-17960837 | Msa0802980:intron | 55.0% | |
| ! | AGGGTTTGGCACGACGCTTT+TGG | - | chr5_3:17960832-17960851 | Msa0802980:intron | 55.0% |
| ! | CTTTTGGCCCAAGCCACCTT+CGG | - | chr5_3:17960848-17960867 | Msa0802980:intron | 55.0% |
| ACAATCGCCGAAGGTGGCTT+GGG | + | chr5_3:17960858-17960877 | None:intergenic | 55.0% | |
| CAGCATGGGGCCACAATTAC+CGG | + | chr5_3:17960892-17960911 | None:intergenic | 55.0% | |
| !! | TTTAGGGGGTCGGTGCTATG+CGG | - | chr5_3:17961292-17961311 | Msa0802980:intron | 55.0% |
| TTCCTTGGGAGCAACCGATC+GGG | - | chr5_3:17961860-17961879 | Msa0802980:intron | 55.0% | |
| AGCTCCCTGTGAGTCCTTGA+AGG | + | chr5_3:17962081-17962100 | None:intergenic | 55.0% | |
| !! | TGTTCAGGGCCTAGCGGATT+AGG | - | chr5_3:17962385-17962404 | Msa0802980:intron | 55.0% |
| GGTGAAACCAGGACATCAGG+TGG | + | chr5_3:17963629-17963648 | None:intergenic | 55.0% | |
| ACAGGCTCACAGGTGAAACC+AGG | + | chr5_3:17963640-17963659 | None:intergenic | 55.0% | |
| ! | AGGGTCTAAGACAGGCTCAC+AGG | + | chr5_3:17963650-17963669 | None:intergenic | 55.0% |
| AAAGCAGAGTCAGCACCACC+AGG | + | chr5_3:17963757-17963776 | None:intergenic | 55.0% | |
| !! | GTGGTGCTGACTCTGCTTTG+CGG | - | chr5_3:17963758-17963777 | Msa0802980:intron | 55.0% |
| !! | TGCTGACTCTGCTTTGCGGA+AGG | - | chr5_3:17963762-17963781 | Msa0802980:intron | 55.0% |
| AAAGCCTTTGGCTGCCATGG+TGG | + | chr5_3:17963803-17963822 | None:intergenic | 55.0% | |
| GAACAGACAGTCAGTACCGC+TGG | - | chr5_3:17964036-17964055 | Msa0802980:intron | 55.0% | |
| TACTGGGGCCTCTTGGGTAA+CGG | - | chr5_3:17964089-17964108 | Msa0802980:intron | 55.0% | |
| !! | CTGCTTTTGGGGGCTCAGAA+AGG | + | chr5_3:17964230-17964249 | None:intergenic | 55.0% |
| ATCAAACCCTGAGCAGGAGC+AGG | + | chr5_3:17964288-17964307 | None:intergenic | 55.0% | |
| CACAATCGCCGAAGGTGGCT+TGG | + | chr5_3:17960859-17960878 | None:intergenic | 60.0% | |
| AGGGGACGCGATAGCAGCAT+GGG | + | chr5_3:17960906-17960925 | None:intergenic | 60.0% | |
| TAGGGGACGCGATAGCAGCA+TGG | + | chr5_3:17960907-17960926 | None:intergenic | 60.0% | |
| CCAGGACATCAGGTGGAAGC+TGG | + | chr5_3:17963622-17963641 | None:intergenic | 60.0% | |
| CCAGCTTCCACCTGATGTCC+TGG | - | chr5_3:17963619-17963638 | Msa0802980:intron | 60.0% | |
| CTCTGCTTTGCGGAAGGCAG+AGG | - | chr5_3:17963768-17963787 | Msa0802980:intron | 60.0% | |
| GTCTCCACCATGGCAGCCAA+AGG | - | chr5_3:17963796-17963815 | Msa0802980:intron | 60.0% | |
| ACTGGGGCCTCTTGGGTAAC+GGG | - | chr5_3:17964090-17964109 | Msa0802980:intron | 60.0% | |
| GAGCAGCAGTCTTCCAAGCC+TGG | - | chr5_3:17964261-17964280 | Msa0802980:intron | 60.0% | |
| GGGGACGCGATAGCAGCATG+GGG | + | chr5_3:17960905-17960924 | None:intergenic | 65.0% | |
| GTCCCGATCGGTTGCTCCCA+AGG | + | chr5_3:17961865-17961884 | None:intergenic | 65.0% | |
| AGCAGGAGCAGGACCAGGCT+TGG | + | chr5_3:17964277-17964296 | None:intergenic | 65.0% | |
| CCTGGTCCTGCTCCTGCTCA+GGG | - | chr5_3:17964279-17964298 | Msa0802980:intron | 65.0% | |
| GCCTGGTCCTGCTCCTGCTC+AGG | - | chr5_3:17964278-17964297 | Msa0802980:intron | 70.0% | |
| CCCTGAGCAGGAGCAGGACC+AGG | + | chr5_3:17964282-17964301 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 17959454 | 17964562 | 17959454 | ID=Msa0802980;Name=Msa0802980 |
| chr5_3 | mRNA | 17959454 | 17964562 | 17959454 | ID=Msa0802980-mRNA-1;Parent=Msa0802980;Name=Msa0802980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=236|1|1|1|0.75|0.8|5|248|281 |
| chr5_3 | exon | 17959454 | 17960280 | 17959454 | ID=Msa0802980-mRNA-1:exon:7366;Parent=Msa0802980-mRNA-1 |
| chr5_3 | exon | 17960367 | 17960447 | 17960367 | ID=Msa0802980-mRNA-1:exon:7365;Parent=Msa0802980-mRNA-1 |
| chr5_3 | exon | 17961895 | 17961970 | 17961895 | ID=Msa0802980-mRNA-1:exon:7364;Parent=Msa0802980-mRNA-1 |
| chr5_3 | exon | 17962079 | 17962182 | 17962079 | ID=Msa0802980-mRNA-1:exon:7363;Parent=Msa0802980-mRNA-1 |
| chr5_3 | exon | 17964321 | 17964562 | 17964321 | ID=Msa0802980-mRNA-1:exon:7362;Parent=Msa0802980-mRNA-1 |
| chr5_3 | five_prime_UTR | 17964327 | 17964562 | 17964327 | ID=Msa0802980-mRNA-1:five_prime_utr;Parent=Msa0802980-mRNA-1 |
| chr5_3 | CDS | 17964321 | 17964326 | 17964321 | ID=Msa0802980-mRNA-1:cds;Parent=Msa0802980-mRNA-1 |
| chr5_3 | CDS | 17962079 | 17962182 | 17962079 | ID=Msa0802980-mRNA-1:cds;Parent=Msa0802980-mRNA-1 |
| chr5_3 | CDS | 17961895 | 17961970 | 17961895 | ID=Msa0802980-mRNA-1:cds;Parent=Msa0802980-mRNA-1 |
| chr5_3 | CDS | 17960367 | 17960447 | 17960367 | ID=Msa0802980-mRNA-1:cds;Parent=Msa0802980-mRNA-1 |
| chr5_3 | CDS | 17959702 | 17960280 | 17959702 | ID=Msa0802980-mRNA-1:cds;Parent=Msa0802980-mRNA-1 |
| chr5_3 | three_prime_UTR | 17959454 | 17959701 | 17959454 | ID=Msa0802980-mRNA-1:three_prime_utr;Parent=Msa0802980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
