AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1420060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420060 MtrunA17_Chr2g0321621 97.093 172 5 0 1 172 38 209 2.67e-125 350
Msa1420060 MtrunA17_Chr4g0026171 65.698 172 57 2 1 172 1 170 1.75e-82 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420060 AT2G27385.2 41.667 168 87 3 5 172 6 162 2.61e-38 129
Msa1420060 AT2G27385.1 41.667 168 87 3 5 172 17 173 4.87e-38 129
Msa1420060 AT2G27385.3 41.667 168 87 3 5 172 17 173 4.87e-38 129
Msa1420060 AT5G22430.1 45.679 162 76 5 16 172 18 172 8.78e-38 128

Find 60 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCACAATTTGGGAGAAT+TGG 0.256434 tig0024736:+58377 None:intergenic
CCATATAATAGTGTAATTAA+TGG 0.257041 tig0024736:+58151 None:intergenic
CCATTAATTACACTATTATA+TGG 0.261693 tig0024736:-58151 Msa1420060:three_prime_UTR
TACCATGGTTTCAGGAATTA+AGG 0.295653 tig0024736:-58563 Msa1420060:intron
CTTCCTTTCTTCCCCATCAT+TGG 0.318190 tig0024736:-58193 Msa1420060:CDS
TGCTTTCACAACGCTCAATA+TGG 0.320675 tig0024736:-60383 Msa1420060:exon
CTTGCCTCCAGAGTGGGGTT+TGG 0.331819 tig0024736:-58233 Msa1420060:CDS
AATTGCCATGCAAAACTTCT+TGG 0.358597 tig0024736:-58433 Msa1420060:CDS
ACTATGTCTTCCATTCTTCC+AGG 0.381148 tig0024736:+58117 None:intergenic
AAAAGTAGCTAGGATATATA+TGG 0.386663 tig0024736:+57882 None:intergenic
GGTTTCTTCTTGAAGCATAA+AGG 0.387581 tig0024736:+58398 None:intergenic
CTTGAAGCATAAAGGTTAGT+TGG 0.400325 tig0024736:+58406 None:intergenic
AGACTTTGCCCTTTACCATT+TGG 0.403798 tig0024736:+60293 None:intergenic
AAGCCAGTTCATTAATTCCT+AGG 0.404092 tig0024736:-58017 Msa1420060:three_prime_UTR
GCTCAGGACTATGATTTCTC+TGG 0.408161 tig0024736:-60256 Msa1420060:intron
TTTCCCCTTGCCTCCAGAGT+GGG 0.435282 tig0024736:-58239 Msa1420060:CDS
TTTGCATGGCAATTATCATA+AGG 0.435517 tig0024736:+58442 None:intergenic
TAGGATATATATGGTTCATA+TGG 0.447539 tig0024736:+57891 None:intergenic
GAACCTAGGAATTAATGAAC+TGG 0.448462 tig0024736:+58014 None:intergenic
TTCAGAATGCCAAATGGTAA+AGG 0.453521 tig0024736:-60302 Msa1420060:CDS
AGAAAATGATGGCTCCTTCA+TGG 0.464326 tig0024736:-58494 Msa1420060:CDS
TGATCATGGTATTCCAATGA+TGG 0.466506 tig0024736:+58180 None:intergenic
TCAGAATGCCAAATGGTAAA+GGG 0.474182 tig0024736:-60301 Msa1420060:CDS
AAACCCCACTCTGGAGGCAA+GGG 0.479581 tig0024736:+58235 None:intergenic
TATGACCCGTGCGGCAGCAC+GGG 0.481193 tig0024736:+57843 None:intergenic
CTCTTGCAATGATTGTGCTC+AGG 0.489097 tig0024736:-60272 Msa1420060:CDS
TTGCACCCGTGCTGCCGCAC+GGG 0.502769 tig0024736:-57848 Msa1420060:three_prime_UTR
CTTGCACCCGTGCTGCCGCA+CGG 0.504962 tig0024736:-57849 Msa1420060:three_prime_UTR
TTTGTTGTCACCTGGAAGAA+TGG 0.514516 tig0024736:-58127 Msa1420060:three_prime_UTR
CCAAATTGTGAAGGGAAAAG+AGG 0.515617 tig0024736:-58368 Msa1420060:CDS
ATTCCAATGATGGGGAAGAA+AGG 0.527851 tig0024736:+58190 None:intergenic
TGCCATGCAAAACTTCTTGG+TGG 0.529749 tig0024736:-58430 Msa1420060:CDS
ATTAATGGAACATATGATCA+TGG 0.531854 tig0024736:+58166 None:intergenic
CTTGGTGCCAAACCCCACTC+TGG 0.534566 tig0024736:+58226 None:intergenic
CAAACCCCACTCTGGAGGCA+AGG 0.536034 tig0024736:+58234 None:intergenic
TATATGGCTTTGTTGTCACC+TGG 0.537582 tig0024736:-58135 Msa1420060:three_prime_UTR
AGTGAAGAAACTGAGAGGAG+TGG 0.538559 tig0024736:+58327 None:intergenic
TAATAGTTCAACATAAATAC+CGG 0.538579 tig0024736:+57960 None:intergenic
TTCCCCTTGCCTCCAGAGTG+GGG 0.538731 tig0024736:-58238 Msa1420060:CDS
GATCATGGTATTCCAATGAT+GGG 0.544352 tig0024736:+58181 None:intergenic
CGTGCGGCAGCACGGGTGCA+AGG 0.544918 tig0024736:+57850 None:intergenic
TAGGAATTAATGAACTGGCT+TGG 0.558062 tig0024736:+58019 None:intergenic
CCAATTCTCCCAAATTGTGA+AGG 0.561971 tig0024736:-58377 Msa1420060:CDS
TGATCATTCAGAATGCCAAA+TGG 0.564476 tig0024736:-60308 Msa1420060:CDS
GCCATGCAAAACTTCTTGGT+GGG 0.568791 tig0024736:-58429 Msa1420060:CDS
ATATGACCCGTGCGGCAGCA+CGG 0.571780 tig0024736:+57842 None:intergenic
TATGTTTAAGAAGTTTGTGA+AGG 0.572121 tig0024736:-58077 Msa1420060:three_prime_UTR
ATTTCCCCTTGCCTCCAGAG+TGG 0.574643 tig0024736:-58240 Msa1420060:CDS
AAAGGAAGATAATAACTACT+TGG 0.580003 tig0024736:+58208 None:intergenic
TGGAAGAATGGAAGACATAG+TGG 0.581096 tig0024736:-58115 Msa1420060:three_prime_UTR
AACCCCACTCTGGAGGCAAG+GGG 0.597617 tig0024736:+58236 None:intergenic
ATGGCAACTACAGAAAATGA+TGG 0.598455 tig0024736:-58505 Msa1420060:CDS
AAGGTCTCAATGAAGTGTGA+AGG 0.600342 tig0024736:-58544 Msa1420060:CDS
GTCTAGTTACAAAAGTAGCT+AGG 0.604451 tig0024736:+57872 None:intergenic
CAATTCTCCCAAATTGTGAA+GGG 0.607626 tig0024736:-58376 Msa1420060:CDS
TGTGGAAAGATCAACCATGA+AGG 0.637832 tig0024736:+58480 None:intergenic
GGTGCCAAACCCCACTCTGG+AGG 0.646400 tig0024736:+58229 None:intergenic
ATCATGGTATTCCAATGATG+GGG 0.661584 tig0024736:+58182 None:intergenic
CAAGAAGTGAAGAAACTGAG+AGG 0.684855 tig0024736:+58322 None:intergenic
CGTCATCAATATGACCCGTG+CGG 0.765589 tig0024736:+57834 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAATAATTTTTTTTTTTTG+GGG + tig0024736:59087-59106 None:intergenic 10.0%
!!! CAAGAATAATTTTTTTTTTT+TGG + tig0024736:59089-59108 None:intergenic 10.0%
!!! TTCTTATTTATGTTAAAAAT+CGG + tig0024736:59185-59204 None:intergenic 10.0%
!! TAATACTATCATATAATTCA+TGG - tig0024736:58411-58430 Msa1420060:CDS 15.0%
!!! TCTTAAACTACTTTAAAAAA+TGG - tig0024736:58844-58863 Msa1420060:intron 15.0%
!!! CTTAAACTACTTTAAAAAAT+GGG - tig0024736:58845-58864 Msa1420060:intron 15.0%
!!! ATTGATAGATTAATTTGTAT+TGG - tig0024736:59225-59244 Msa1420060:intron 15.0%
!! AATAACTATTTAGAAATGTT+GGG + tig0024736:59464-59483 None:intergenic 15.0%
!!! TTTTTATTATTGGTGTCATT+AGG + tig0024736:58218-58237 None:intergenic 20.0%
!! CCAATAATAAAAATTATGTG+CGG - tig0024736:58225-58244 Msa1420060:CDS 20.0%
!!! TAATTAAGCTTTAATACCTT+AGG - tig0024736:58374-58393 Msa1420060:CDS 20.0%
!!! TATTTTGAAGAATTTACCTA+AGG + tig0024736:58393-58412 None:intergenic 20.0%
!!! TTTTATGTTTCTCAATGAAA+TGG - tig0024736:58443-58462 Msa1420060:CDS 20.0%
!!! TTGATAAGTTTCTTGTTTAA+TGG - tig0024736:58504-58523 Msa1420060:CDS 20.0%
!!! TGATAAGTTTCTTGTTTAAT+GGG - tig0024736:58505-58524 Msa1420060:CDS 20.0%
!! TTGATCCATAATTATCTAAT+AGG - tig0024736:58614-58633 Msa1420060:intron 20.0%
!!! TTTAGATCTTTAGATTTGTT+GGG + tig0024736:58645-58664 None:intergenic 20.0%
!!! TTTTAGATCTTTAGATTTGT+TGG + tig0024736:58646-58665 None:intergenic 20.0%
!! ATTGTAAAACAACATGTAAA+CGG + tig0024736:58731-58750 None:intergenic 20.0%
!!! CTACTGATTAAAATTCATAT+GGG + tig0024736:58986-59005 None:intergenic 20.0%
!!! TCTACTGATTAAAATTCATA+TGG + tig0024736:58987-59006 None:intergenic 20.0%
!! AAAAAAAATTATTCTTGAGC+TGG - tig0024736:59092-59111 Msa1420060:intron 20.0%
!!! TAGATTAATTTGTATTGGTT+TGG - tig0024736:59230-59249 Msa1420060:intron 20.0%
!! TTCAATATGTTTATGACTAT+TGG + tig0024736:59328-59347 None:intergenic 20.0%
!! ATAGTCATAAACATATTGAA+TGG - tig0024736:59328-59347 Msa1420060:intron 20.0%
!!! ATTTTTCAACGTAAACAAAT+AGG + tig0024736:59376-59395 None:intergenic 20.0%
!!! ATTTTGTAAATAGTCGATTA+TGG - tig0024736:59409-59428 Msa1420060:intron 20.0%
!! CAATAACTATTTAGAAATGT+TGG + tig0024736:59465-59484 None:intergenic 20.0%
!!! TACAACTTCTCATATTTTTT+AGG - tig0024736:59612-59631 Msa1420060:intron 20.0%
!! CCATATAATAGTGTAATTAA+TGG + tig0024736:60088-60107 None:intergenic 20.0%
!! CCATTAATTACACTATTATA+TGG - tig0024736:60085-60104 Msa1420060:intron 20.0%
!! TAATAGTTCAACATAAATAC+CGG + tig0024736:60279-60298 None:intergenic 20.0%
! TCAGGATATATTAATAAGCT+AGG + tig0024736:58091-58110 None:intergenic 25.0%
! CAATGAATGACTAATATATC+TGG + tig0024736:58190-58209 None:intergenic 25.0%
! CAGATATATTAGTCATTCAT+TGG - tig0024736:58188-58207 Msa1420060:CDS 25.0%
!! CCGCACATAATTTTTATTAT+TGG + tig0024736:58228-58247 None:intergenic 25.0%
!! ACACATATTAATCAGTTTTG+TGG + tig0024736:58547-58566 None:intergenic 25.0%
!!! CTCTCACTTTTTAAAAGAAA+TGG + tig0024736:58590-58609 None:intergenic 25.0%
!!! CATTTCTTTTAAAAAGTGAG+AGG - tig0024736:58588-58607 Msa1420060:intron 25.0%
!!! TTAGATCTTTAGATTTGTTG+GGG + tig0024736:58644-58663 None:intergenic 25.0%
! TAGTCGATTATGGATAAAAT+TGG - tig0024736:59419-59438 Msa1420060:intron 25.0%
! AGTTGTAAATTGAAAATGTG+TGG + tig0024736:59652-59671 None:intergenic 25.0%
!!! AGTTTTGCATTCTTTGTTTT+CGG + tig0024736:59942-59961 None:intergenic 25.0%
! AAAACTGAGAAAAATGAGTT+TGG - tig0024736:59956-59975 Msa1420060:intron 25.0%
! AAAGGAAGATAATAACTACT+TGG + tig0024736:60031-60050 None:intergenic 25.0%
! ATTAATGGAACATATGATCA+TGG + tig0024736:60073-60092 None:intergenic 25.0%
! TATGTTTAAGAAGTTTGTGA+AGG - tig0024736:60159-60178 Msa1420060:intron 25.0%
! TAGGATATATATGGTTCATA+TGG + tig0024736:60348-60367 None:intergenic 25.0%
! AAAAGTAGCTAGGATATATA+TGG + tig0024736:60357-60376 None:intergenic 25.0%
AATATATCCTGATCAATCCT+AGG - tig0024736:58099-58118 Msa1420060:three_prime_UTR 30.0%
! ATATACTCCATCAACGTTTT+AGG - tig0024736:58127-58146 Msa1420060:three_prime_UTR 30.0%
CAATAAACCTAAAACGTTGA+TGG + tig0024736:58137-58156 None:intergenic 30.0%
TATGTTTCTCAATGAAATGG+AGG - tig0024736:58446-58465 Msa1420060:CDS 30.0%
TTGTTTAATGGGATCCATAT+TGG - tig0024736:58516-58535 Msa1420060:CDS 30.0%
GCTGTCCTATTAGATAATTA+TGG + tig0024736:58622-58641 None:intergenic 30.0%
ATTGATCCCATAAAATTACG+TGG - tig0024736:58958-58977 Msa1420060:intron 30.0%
AAAATTATTCTTGAGCTGGT+TGG - tig0024736:59096-59115 Msa1420060:intron 30.0%
GGCTCAATGTTTATTATTTG+AGG + tig0024736:59142-59161 None:intergenic 30.0%
!! TTGTATTGGTTTGGTACTTT+CGG - tig0024736:59239-59258 Msa1420060:intron 30.0%
!! TATTTGTTATTGAGACTGAC+CGG + tig0024736:59269-59288 None:intergenic 30.0%
TTCAATTTACAACTCTACCA+TGG - tig0024736:59658-59677 Msa1420060:intron 30.0%
! TATCATAAGGAAGTTTTGCA+TGG + tig0024736:59784-59803 None:intergenic 30.0%
TTTGCATGGCAATTATCATA+AGG + tig0024736:59797-59816 None:intergenic 30.0%
!!! TTTTGCATTCTTTGTTTTCG+GGG + tig0024736:59940-59959 None:intergenic 30.0%
!!! GTTTTGCATTCTTTGTTTTC+GGG + tig0024736:59941-59960 None:intergenic 30.0%
TGATCATTCAGAATGCCAAA+TGG - tig0024736:57928-57947 Msa1420060:three_prime_UTR 35.0%
TTCAGAATGCCAAATGGTAA+AGG - tig0024736:57934-57953 Msa1420060:three_prime_UTR 35.0%
TCAGAATGCCAAATGGTAAA+GGG - tig0024736:57935-57954 Msa1420060:three_prime_UTR 35.0%
ATACTTACCTAGGATTGATC+AGG + tig0024736:58109-58128 None:intergenic 35.0%
GATGGAGTATATACTTACCT+AGG + tig0024736:58119-58138 None:intergenic 35.0%
TTTAATGGGATCCATATTGG+TGG - tig0024736:58519-58538 Msa1420060:CDS 35.0%
! TGGGATCCACGTAATTTTAT+GGG + tig0024736:58967-58986 None:intergenic 35.0%
! ATGGGATCCACGTAATTTTA+TGG + tig0024736:58968-58987 None:intergenic 35.0%
!!! TTTTTTTTTTGGGGTAGCCA+AGG + tig0024736:59078-59097 None:intergenic 35.0%
CTAGCAAAAAATTTACGCAG+GGG + tig0024736:59574-59593 None:intergenic 35.0%
GCTAGCAAAAAATTTACGCA+GGG + tig0024736:59575-59594 None:intergenic 35.0%
AGCTAGCAAAAAATTTACGC+AGG + tig0024736:59576-59595 None:intergenic 35.0%
TACCATGGTTTCAGGAATTA+AGG - tig0024736:59673-59692 Msa1420060:intron 35.0%
ATGGCAACTACAGAAAATGA+TGG - tig0024736:59731-59750 Msa1420060:intron 35.0%
AATTGCCATGCAAAACTTCT+TGG - tig0024736:59803-59822 Msa1420060:intron 35.0%
CTTGAAGCATAAAGGTTAGT+TGG + tig0024736:59833-59852 None:intergenic 35.0%
GGTTTCTTCTTGAAGCATAA+AGG + tig0024736:59841-59860 None:intergenic 35.0%
CAATTCTCCCAAATTGTGAA+GGG - tig0024736:59860-59879 Msa1420060:intron 35.0%
! CTCTTTTCCCTTCACAATTT+GGG + tig0024736:59870-59889 None:intergenic 35.0%
ATCATGGTATTCCAATGATG+GGG + tig0024736:60057-60076 None:intergenic 35.0%
GATCATGGTATTCCAATGAT+GGG + tig0024736:60058-60077 None:intergenic 35.0%
TGATCATGGTATTCCAATGA+TGG + tig0024736:60059-60078 None:intergenic 35.0%
TAGGAATTAATGAACTGGCT+TGG + tig0024736:60220-60239 None:intergenic 35.0%
AAGCCAGTTCATTAATTCCT+AGG - tig0024736:60219-60238 Msa1420060:intron 35.0%
GAACCTAGGAATTAATGAAC+TGG + tig0024736:60225-60244 None:intergenic 35.0%
! ACTTATCAGCTTTTGAACCT+AGG + tig0024736:60239-60258 None:intergenic 35.0%
!!! GTATATCTTGCTGTTTTGTC+CGG - tig0024736:60257-60276 Msa1420060:CDS 35.0%
GTCTAGTTACAAAAGTAGCT+AGG + tig0024736:60367-60386 None:intergenic 35.0%
TGCTTTCACAACGCTCAATA+TGG - tig0024736:57853-57872 Msa1420060:three_prime_UTR 40.0%
AGACTTTGCCCTTTACCATT+TGG + tig0024736:57946-57965 None:intergenic 40.0%
! GTTTTGTGGATCCACCAATA+TGG + tig0024736:58533-58552 None:intergenic 40.0%
!! TTTTAGAGAGTGTGATGCTC+AGG - tig0024736:59024-59043 Msa1420060:intron 40.0%
! TTTAGAGAGTGTGATGCTCA+GGG - tig0024736:59025-59044 Msa1420060:intron 40.0%
! GCAATTGAACTTGTTTGAGG+TGG + tig0024736:59163-59182 None:intergenic 40.0%
! TCGGCAATTGAACTTGTTTG+AGG + tig0024736:59166-59185 None:intergenic 40.0%
AGAAGTTGTAGCATCACCAA+CGG + tig0024736:59602-59621 None:intergenic 40.0%
TACAACTCTACCATGGTTTC+AGG - tig0024736:59665-59684 Msa1420060:intron 40.0%
GACCTTAATTCCTGAAACCA+TGG + tig0024736:59678-59697 None:intergenic 40.0%
AAGGTCTCAATGAAGTGTGA+AGG - tig0024736:59692-59711 Msa1420060:intron 40.0%
GTGTGAAGGAGTGAAAAACA+TGG - tig0024736:59706-59725 Msa1420060:intron 40.0%
AGGAGTGAAAAACATGGCAA+TGG - tig0024736:59712-59731 Msa1420060:intron 40.0%
AGAAAATGATGGCTCCTTCA+TGG - tig0024736:59742-59761 Msa1420060:intron 40.0%
TGTGGAAAGATCAACCATGA+AGG + tig0024736:59759-59778 None:intergenic 40.0%
CCTTCACAATTTGGGAGAAT+TGG + tig0024736:59862-59881 None:intergenic 40.0%
CCAATTCTCCCAAATTGTGA+AGG - tig0024736:59859-59878 Msa1420060:intron 40.0%
! CCTCTTTTCCCTTCACAATT+TGG + tig0024736:59871-59890 None:intergenic 40.0%
CCAAATTGTGAAGGGAAAAG+AGG - tig0024736:59868-59887 Msa1420060:intron 40.0%
CAAGAAGTGAAGAAACTGAG+AGG + tig0024736:59917-59936 None:intergenic 40.0%
! ATTCCAATGATGGGGAAGAA+AGG + tig0024736:60049-60068 None:intergenic 40.0%
!! TATATGGCTTTGTTGTCACC+TGG - tig0024736:60101-60120 Msa1420060:intron 40.0%
! TTTGTTGTCACCTGGAAGAA+TGG - tig0024736:60109-60128 Msa1420060:intron 40.0%
ACTATGTCTTCCATTCTTCC+AGG + tig0024736:60122-60141 None:intergenic 40.0%
TGGAAGAATGGAAGACATAG+TGG - tig0024736:60121-60140 Msa1420060:intron 40.0%
CTCTTGCAATGATTGTGCTC+AGG - tig0024736:57964-57983 Msa1420060:three_prime_UTR 45.0%
GCTCAGGACTATGATTTCTC+TGG - tig0024736:57980-57999 Msa1420060:three_prime_UTR 45.0%
! TTAGAGAGTGTGATGCTCAG+GGG - tig0024736:59026-59045 Msa1420060:intron 45.0%
GTTTGGTACTTTCGGACTTC+CGG - tig0024736:59247-59266 Msa1420060:intron 45.0%
!!! TTTTTTGCTAGCTTCGCCGT+TGG - tig0024736:59583-59602 Msa1420060:intron 45.0%
! AGGAAGTTTTGCATGGCTTG+TGG + tig0024736:59777-59796 None:intergenic 45.0%
TGCCATGCAAAACTTCTTGG+TGG - tig0024736:59806-59825 Msa1420060:intron 45.0%
GCCATGCAAAACTTCTTGGT+GGG - tig0024736:59807-59826 Msa1420060:intron 45.0%
AGTGAAGAAACTGAGAGGAG+TGG + tig0024736:59912-59931 None:intergenic 45.0%
CTTCCTTTCTTCCCCATCAT+TGG - tig0024736:60043-60062 Msa1420060:intron 45.0%
!! AATATTTATTTAATAATGTT+AGG - tig0024736:58876-58895 Msa1420060:intron 5.0%
!!! AAGAATAATTTTTTTTTTTT+GGG + tig0024736:59088-59107 None:intergenic 5.0%
!! ATTTAAAAAAAAAATATAGT+TGG - tig0024736:59548-59567 Msa1420060:intron 5.0%
! GCCCACCAAGAAGTTTTGCA+TGG + tig0024736:59811-59830 None:intergenic 50.0%
CGTCATCAATATGACCCGTG+CGG + tig0024736:60405-60424 None:intergenic 50.0%
AGCCCTTCATGCACATGGAG+TGG - tig0024736:59052-59071 Msa1420060:intron 55.0%
GGCCACTCCATGTGCATGAA+GGG + tig0024736:59057-59076 None:intergenic 55.0%
AGGCCACTCCATGTGCATGA+AGG + tig0024736:59058-59077 None:intergenic 55.0%
TCATGCACATGGAGTGGCCT+TGG - tig0024736:59058-59077 Msa1420060:intron 55.0%
ATTTCCCCTTGCCTCCAGAG+TGG - tig0024736:59996-60015 Msa1420060:intron 55.0%
TTTCCCCTTGCCTCCAGAGT+GGG - tig0024736:59997-60016 Msa1420060:intron 55.0%
! AAACCCCACTCTGGAGGCAA+GGG + tig0024736:60004-60023 None:intergenic 55.0%
GGCGTAGCCCTTCATGCACA+TGG - tig0024736:59047-59066 Msa1420060:intron 60.0%
TTCCCCTTGCCTCCAGAGTG+GGG - tig0024736:59998-60017 Msa1420060:intron 60.0%
! AACCCCACTCTGGAGGCAAG+GGG + tig0024736:60003-60022 None:intergenic 60.0%
! CAAACCCCACTCTGGAGGCA+AGG + tig0024736:60005-60024 None:intergenic 60.0%
CTTGCCTCCAGAGTGGGGTT+TGG - tig0024736:60003-60022 Msa1420060:intron 60.0%
!! CTTGGTGCCAAACCCCACTC+TGG + tig0024736:60013-60032 None:intergenic 60.0%
ATATGACCCGTGCGGCAGCA+CGG + tig0024736:60397-60416 None:intergenic 60.0%
GGTGCCAAACCCCACTCTGG+AGG + tig0024736:60010-60029 None:intergenic 65.0%
TATGACCCGTGCGGCAGCAC+GGG + tig0024736:60396-60415 None:intergenic 65.0%
CTTGCACCCGTGCTGCCGCA+CGG - tig0024736:60387-60406 Msa1420060:five_prime_UTR 70.0%
TTGCACCCGTGCTGCCGCAC+GGG - tig0024736:60388-60407 Msa1420060:five_prime_UTR 70.0%
CGTGCGGCAGCACGGGTGCA+AGG + tig0024736:60389-60408 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0024736 gene 57831 60427 57831 ID=Msa1420060;Name=Msa1420060
tig0024736 mRNA 57831 60427 57831 ID=Msa1420060-mRNA-1;Parent=Msa1420060;Name=Msa1420060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=41|1|1|1|1|1|2|352|172
tig0024736 exon 57831 58571 57831 ID=Msa1420060-mRNA-1:exon:1213;Parent=Msa1420060-mRNA-1
tig0024736 exon 60257 60427 60257 ID=Msa1420060-mRNA-1:exon:1212;Parent=Msa1420060-mRNA-1
tig0024736 five_prime_UTR 60387 60427 60387 ID=Msa1420060-mRNA-1:five_prime_utr;Parent=Msa1420060-mRNA-1
tig0024736 CDS 60257 60386 60257 ID=Msa1420060-mRNA-1:cds;Parent=Msa1420060-mRNA-1
tig0024736 CDS 58183 58571 58183 ID=Msa1420060-mRNA-1:cds;Parent=Msa1420060-mRNA-1
tig0024736 three_prime_UTR 57831 58182 57831 ID=Msa1420060-mRNA-1:three_prime_utr;Parent=Msa1420060-mRNA-1
Gene Sequence

>Msa1420060

ATGGCATTTGTTCATGTTATCACAACACTTCTTTTTGCATTAGCTTTTGCTAGAATTGATCATTCAGAATGCCAAATGGTAAAGGGCAAAGTCTCTTGCAATGATTGTGCTCAGGACTATGATTTCTCTGGAATTAAGGTCTCAATGAAGTGTGAAGGAGTGAAAAACATGGCAATGGCAACTACAGAAAATGATGGCTCCTTCATGGTTGATCTTTCCACAAGCCATGCAAAACTTCCTTATGATAATTGCCATGCAAAACTTCTTGGTGGGCCAACTAACCTTTATGCTTCAAGAAGAAACCAATTCTCCCAAATTGTGAAGGGAAAAGAGGAAAATAGCTACACACTATCCACTCCTCTCAGTTTCTTCACTTCTTGCCCCGAAAACAAAGAATGCAAAACTGAGAAAAATGAGTTTGGTTCATCAAAAAGCATCAATTTCCCCTTGCCTCCAGAGTGGGGTTTGGCACCAAGTAGTTATTATCTTCCTTTCTTCCCCATCATTGGAATACCATGA

Protein sequence

>Msa1420060

MAFVHVITTLLFALAFARIDHSECQMVKGKVSCNDCAQDYDFSGIKVSMKCEGVKNMAMATTENDGSFMVDLSTSHAKLPYDNCHAKLLGGPTNLYASRRNQFSQIVKGKEENSYTLSTPLSFFTSCPENKECKTEKNEFGSSKSINFPLPPEWGLAPSSYYLPFFPIIGIP*