Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0723710 | -0.807089 | 5.992981e-50 | -8.615850e-47 |
| Msa0723710 | Msa0768290 | -0.801095 | 1.058435e-48 | -8.615850e-47 |
| Msa0723710 | Msa0925250 | -0.803615 | 3.202893e-49 | -8.615850e-47 |
| Msa0145190 | Msa0723710 | -0.815157 | 1.067627e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGATTCTGATTAGGATTT+TGG | 0.154428 | 5_1:+21590062 | Msa0723710:three_prime_UTR |
| GTTACTTTGTCTAAATATTC+AGG | 0.211287 | 5_1:+21587358 | Msa0723710:CDS |
| CACAAACATGTATCGCTTAT+AGG | 0.264325 | 5_1:-21589889 | None:intergenic |
| GGTAACTCGCGGTCGTCATC+GGG | 0.283012 | 5_1:-21586855 | None:intergenic |
| ATTACCCGAGAAGGATTGTT+AGG | 0.308989 | 5_1:-21587221 | None:intergenic |
| ATCGCTCTCGTTGCTTGCTT+TGG | 0.312295 | 5_1:+21586915 | Msa0723710:CDS |
| TTTCTAAATGCTGTATATAA+TGG | 0.336561 | 5_1:+21587197 | Msa0723710:CDS |
| TCGCGGTCGTCATCGGGGTC+GGG | 0.336697 | 5_1:-21586849 | None:intergenic |
| TTTATGAAAGGATTCTGATT+AGG | 0.343615 | 5_1:+21590055 | Msa0723710:three_prime_UTR |
| GATTGAGATATGAGATTTCC+TGG | 0.344225 | 5_1:+21586813 | Msa0723710:exon |
| TTTGTCTTAGTATTTCTTCA+TGG | 0.351370 | 5_1:+21587172 | Msa0723710:intron |
| GTCGTCATCGGGGTCGGGGA+CGG | 0.353019 | 5_1:-21586844 | None:intergenic |
| TCGTCATCGGGGTCGGGGAC+GGG | 0.366648 | 5_1:-21586843 | None:intergenic |
| AGGTAACTCGCGGTCGTCAT+CGG | 0.368116 | 5_1:-21586856 | None:intergenic |
| CGTTCAGTTTGTGGATGATA+AGG | 0.408843 | 5_1:+21589751 | Msa0723710:CDS |
| CTCGCGGTCGTCATCGGGGT+CGG | 0.412500 | 5_1:-21586850 | None:intergenic |
| ATTACTATTTCGTACTATGA+TGG | 0.420532 | 5_1:+21589944 | Msa0723710:three_prime_UTR |
| CGCGGTCGTCATCGGGGTCG+GGG | 0.421143 | 5_1:-21586848 | None:intergenic |
| TTGTCGAGGCGAACGAGAAA+GGG | 0.445324 | 5_1:-21586879 | None:intergenic |
| TTACTTTGTCTAAATATTCA+GGG | 0.448785 | 5_1:+21587359 | Msa0723710:CDS |
| GTATCTACCTTGAGATCTGC+TGG | 0.450233 | 5_1:-21587385 | None:intergenic |
| AAGCAAGCAACGAGAGCGAT+TGG | 0.450944 | 5_1:-21586912 | None:intergenic |
| ATCCGCTGCCAAGGACTGAT+AGG | 0.453726 | 5_1:+21588393 | Msa0723710:CDS |
| ATGGCCCTAACAATCCTTCT+CGG | 0.459402 | 5_1:+21587216 | Msa0723710:CDS |
| TTTGTCGAGGCGAACGAGAA+AGG | 0.462546 | 5_1:-21586880 | None:intergenic |
| ACGAAGGACTCTGAAAGTTC+CGG | 0.478358 | 5_1:-21587337 | None:intergenic |
| GTTTGTGGATGATAAGGTAA+TGG | 0.481823 | 5_1:+21589757 | Msa0723710:CDS |
| ACTCAATGATTGCGTTAGAA+AGG | 0.482332 | 5_1:-21590259 | None:intergenic |
| CTCGTTGCTTGCTTTGGTGT+AGG | 0.488885 | 5_1:+21586921 | Msa0723710:CDS |
| TATGTTCGACGTTCAGTTTG+TGG | 0.493659 | 5_1:+21589742 | Msa0723710:CDS |
| TCAAATATGATAGTCAAGAA+AGG | 0.500780 | 5_1:-21590326 | None:intergenic |
| AGCAAGCAACGAGAGCGATT+GGG | 0.512008 | 5_1:-21586911 | None:intergenic |
| TCGGGGACGGGATCGTAACC+AGG | 0.513371 | 5_1:-21586831 | None:intergenic |
| CGTACTATGATGGTACTTCG+AGG | 0.518828 | 5_1:+21589954 | Msa0723710:three_prime_UTR |
| AATTGTTTAATTACCCGAGA+AGG | 0.524246 | 5_1:-21587230 | None:intergenic |
| TGGCCCTAACAATCCTTCTC+GGG | 0.529611 | 5_1:+21587217 | Msa0723710:CDS |
| TTACCCGAGAAGGATTGTTA+GGG | 0.536159 | 5_1:-21587220 | None:intergenic |
| TAGGTCATATTGCCTCCGTA+TGG | 0.538977 | 5_1:+21587029 | Msa0723710:intron |
| TTCAAGAGCAAGTGCTGAAG+CGG | 0.553335 | 5_1:-21590416 | None:intergenic |
| AACCTATCAGTCCTTGGCAG+CGG | 0.561806 | 5_1:-21588395 | None:intergenic |
| TAAGCTTACTGGTTTAAAGC+CGG | 0.565760 | 5_1:-21587531 | None:intergenic |
| GGTGTAGGTTTCTCGAATGT+AGG | 0.571295 | 5_1:-21587510 | None:intergenic |
| ACTGACTTCTTTGTACCATA+CGG | 0.572715 | 5_1:-21587044 | None:intergenic |
| ATGTCGAACCTATCAGTCCT+TGG | 0.575157 | 5_1:-21588401 | None:intergenic |
| AGGGACTCCAGCAGATCTCA+AGG | 0.582870 | 5_1:+21587378 | Msa0723710:CDS |
| TCGAATGTAGGCATCTCCAA+TGG | 0.595369 | 5_1:-21587498 | None:intergenic |
| TACTGGTTTAAAGCCGGTGT+AGG | 0.598823 | 5_1:-21587525 | None:intergenic |
| CCTTAAAATCGTAAACGACA+TGG | 0.601425 | 5_1:-21587072 | None:intergenic |
| TACATTCGAGAAACCTACAC+CGG | 0.658475 | 5_1:+21587512 | Msa0723710:CDS |
| TCGAGGCGAACGAGAAAGGG+AGG | 0.663865 | 5_1:-21586876 | None:intergenic |
| GACTTCTTTGTACCATACGG+AGG | 0.677102 | 5_1:-21587041 | None:intergenic |
| CATTGAGTTGTATCATACTG+TGG | 0.685857 | 5_1:+21589858 | Msa0723710:three_prime_UTR |
| ATATTTAGACAAAGTAACGA+AGG | 0.710404 | 5_1:-21587353 | None:intergenic |
| GTAACTCGCGGTCGTCATCG+GGG | 0.722942 | 5_1:-21586854 | None:intergenic |
| CGAGAAAGGGAGGTAACTCG+CGG | 0.727528 | 5_1:-21586866 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATTTATTTATTAACAT+GGG | - | chr5_1:21587306-21587325 | None:intergenic | 10.0% |
| !! | TGAAAATTTATTTATTAACA+TGG | - | chr5_1:21587307-21587326 | None:intergenic | 10.0% |
| !! | AAATTAATTACTAACTAATT+AGG | - | chr5_1:21587434-21587453 | None:intergenic | 10.0% |
| !! | GAAAATATGTTTAAAAATAT+TGG | + | chr5_1:21587916-21587935 | Msa0723710:intron | 10.0% |
| !!! | TTTTTATAATATAATTGTTG+TGG | + | chr5_1:21588555-21588574 | Msa0723710:intron | 10.0% |
| !!! | TAGTAATTAAGTTTAATTTT+TGG | - | chr5_1:21589931-21589950 | None:intergenic | 10.0% |
| !! | ACATATTATGTTAGAAAATA+AGG | - | chr5_1:21588112-21588131 | None:intergenic | 15.0% |
| !!! | TTGTAATTAAGTTCAATTTT+TGG | - | chr5_1:21588844-21588863 | None:intergenic | 15.0% |
| !!! | GTTTTAAACTGAATTTAAAT+TGG | + | chr5_1:21589450-21589469 | Msa0723710:intron | 15.0% |
| !! | TTTCTAAATGCTGTATATAA+TGG | + | chr5_1:21587197-21587216 | Msa0723710:CDS | 20.0% |
| !! | TTACTTTGTCTAAATATTCA+GGG | + | chr5_1:21587359-21587378 | Msa0723710:CDS | 20.0% |
| !! | GATAGATTATAATAGAATGA+TGG | + | chr5_1:21587716-21587735 | Msa0723710:intron | 20.0% |
| !!! | TCAAATTGAAGTTTTAAATC+TGG | - | chr5_1:21588012-21588031 | None:intergenic | 20.0% |
| !! | AAAAGTCTATATTAAATCAG+AGG | - | chr5_1:21588459-21588478 | None:intergenic | 20.0% |
| !!! | AATTTTAAGTAGTCTGTTTA+TGG | + | chr5_1:21588484-21588503 | Msa0723710:intron | 20.0% |
| !!! | ATTTTAAGTAGTCTGTTTAT+GGG | + | chr5_1:21588485-21588504 | Msa0723710:intron | 20.0% |
| !! | TATAAATTATAATGTGATGC+TGG | + | chr5_1:21588678-21588697 | Msa0723710:intron | 20.0% |
| !! | TACATCATAAATCAATAACA+TGG | - | chr5_1:21589644-21589663 | None:intergenic | 20.0% |
| !!! | TCTGATAAGTTTTTTATGAA+AGG | + | chr5_1:21590043-21590062 | Msa0723710:three_prime_UTR | 20.0% |
| !!! | ATTCGTATGATTTTTTTTGA+GGG | + | chr5_1:21590121-21590140 | Msa0723710:intron | 20.0% |
| ! | AATATGACCTAAAAGAAGAA+AGG | - | chr5_1:21587020-21587039 | None:intergenic | 25.0% |
| !! | CAATCCATTTTCATTCTTTT+TGG | + | chr5_1:21587116-21587135 | Msa0723710:intron | 25.0% |
| ! | AACACCAAAAAGAATGAAAA+TGG | - | chr5_1:21587123-21587142 | None:intergenic | 25.0% |
| ! | TTTGTCTTAGTATTTCTTCA+TGG | + | chr5_1:21587172-21587191 | Msa0723710:intron | 25.0% |
| ! | ATATTTAGACAAAGTAACGA+AGG | - | chr5_1:21587356-21587375 | None:intergenic | 25.0% |
| !! | GTTACTTTGTCTAAATATTC+AGG | + | chr5_1:21587358-21587377 | Msa0723710:CDS | 25.0% |
| ! | AGTATTATCTATTGTTACCA+TGG | + | chr5_1:21587582-21587601 | Msa0723710:intron | 25.0% |
| ! | CACTTGCAAAAGAAAATAAT+TGG | + | chr5_1:21587651-21587670 | Msa0723710:intron | 25.0% |
| ! | CTATTAATGTCAGAAAGTAA+TGG | + | chr5_1:21587691-21587710 | Msa0723710:intron | 25.0% |
| ! | TACTAAATAACATACTGCTA+GGG | + | chr5_1:21587743-21587762 | Msa0723710:intron | 25.0% |
| !!! | GGTTTAATTGTTTCTCTTTT+CGG | + | chr5_1:21587764-21587783 | Msa0723710:intron | 25.0% |
| ! | TGTTAAAAGAATCAATAAGG+GGG | - | chr5_1:21587827-21587846 | None:intergenic | 25.0% |
| ! | GTGTTAAAAGAATCAATAAG+GGG | - | chr5_1:21587828-21587847 | None:intergenic | 25.0% |
| ! | CGTGTTAAAAGAATCAATAA+GGG | - | chr5_1:21587829-21587848 | None:intergenic | 25.0% |
| !!! | CCTTATTGATTCTTTTAACA+CGG | + | chr5_1:21587827-21587846 | Msa0723710:intron | 25.0% |
| ! | TGCTAAATGATGTAATATGT+TGG | + | chr5_1:21588268-21588287 | Msa0723710:intron | 25.0% |
| !!! | CAAACCTTGTTATTCAAAAA+CGG | - | chr5_1:21588428-21588447 | None:intergenic | 25.0% |
| !! | CAATGTGTTATAACTTTTCA+AGG | + | chr5_1:21588611-21588630 | Msa0723710:intron | 25.0% |
| ! | ATTACCGTTTCCTAATATAT+TGG | + | chr5_1:21588756-21588775 | Msa0723710:intron | 25.0% |
| !! | TCTGATAAGTTTTTGATGAA+AGG | + | chr5_1:21588910-21588929 | Msa0723710:intron | 25.0% |
| !! | ATTGCATCTTATGCTTTTAT+AGG | + | chr5_1:21589016-21589035 | Msa0723710:intron | 25.0% |
| !!! | AAATAACACTACCTTTGTTT+TGG | + | chr5_1:21589281-21589300 | Msa0723710:intron | 25.0% |
| !!! | AATATAAACCGGTTTTAAAC+TGG | + | chr5_1:21589428-21589447 | Msa0723710:intron | 25.0% |
| !! | GTTTAAAACCAGTTTAAAAC+CGG | - | chr5_1:21589439-21589458 | None:intergenic | 25.0% |
| ! | ATTACTATTTCGTACTATGA+TGG | + | chr5_1:21589944-21589963 | Msa0723710:three_prime_UTR | 25.0% |
| ! | TTTATGAAAGGATTCTGATT+AGG | + | chr5_1:21590055-21590074 | Msa0723710:three_prime_UTR | 25.0% |
| !!! | GATTCGTATGATTTTTTTTG+AGG | + | chr5_1:21590120-21590139 | Msa0723710:intron | 25.0% |
| ! | CAGAAAAGTTACTTCAAAAA+AGG | - | chr5_1:21590231-21590250 | None:intergenic | 25.0% |
| ! | TCAAATATGATAGTCAAGAA+AGG | - | chr5_1:21590329-21590348 | None:intergenic | 25.0% |
| ! | TCTCATTCCTTTCTTCTTTT+AGG | + | chr5_1:21587010-21587029 | Msa0723710:intron | 30.0% |
| AATTGTTTAATTACCCGAGA+AGG | - | chr5_1:21587233-21587252 | None:intergenic | 30.0% | |
| CAATACTAATACATAGAGGA+TGG | - | chr5_1:21587258-21587277 | None:intergenic | 30.0% | |
| AGGACAATACTAATACATAG+AGG | - | chr5_1:21587262-21587281 | None:intergenic | 30.0% | |
| TAATTGTCTAAGCAGGAATT+AGG | - | chr5_1:21587282-21587301 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTGCAAGTGTGAA+GGG | - | chr5_1:21587647-21587666 | None:intergenic | 30.0% |
| ! | ATTTTCTTTTGCAAGTGTGA+AGG | - | chr5_1:21587648-21587667 | None:intergenic | 30.0% |
| GTACTAAATAACATACTGCT+AGG | + | chr5_1:21587742-21587761 | Msa0723710:intron | 30.0% | |
| GTTAAAAGAATCAATAAGGG+GGG | - | chr5_1:21587826-21587845 | None:intergenic | 30.0% | |
| CCGTGTTAAAAGAATCAATA+AGG | - | chr5_1:21587830-21587849 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTAAATCTGGATAG+CGG | - | chr5_1:21588005-21588024 | None:intergenic | 30.0% |
| ! | TTTGAATCTTTTCCTCTATG+TGG | + | chr5_1:21588027-21588046 | Msa0723710:intron | 30.0% |
| ! | TCGGGATTAGTATAAATTCT+AGG | + | chr5_1:21588083-21588102 | Msa0723710:intron | 30.0% |
| ! | CGGGATTAGTATAAATTCTA+GGG | + | chr5_1:21588084-21588103 | Msa0723710:intron | 30.0% |
| AATGCATTGCATTCAAAGAA+GGG | + | chr5_1:21588145-21588164 | Msa0723710:intron | 30.0% | |
| !! | TCAGTATATTTGCTGACTTT+AGG | - | chr5_1:21588232-21588251 | None:intergenic | 30.0% |
| AATATACTGATCTGAGTTGT+TGG | + | chr5_1:21588242-21588261 | Msa0723710:intron | 30.0% | |
| !! | CATTCCGTTTTTGAATAACA+AGG | + | chr5_1:21588421-21588440 | Msa0723710:CDS | 30.0% |
| AACACATTGCAGTATCATAA+AGG | - | chr5_1:21588600-21588619 | None:intergenic | 30.0% | |
| ACGGTAATTAAGTTCAATTG+TGG | - | chr5_1:21588744-21588763 | None:intergenic | 30.0% | |
| AGCACCAATATATTAGGAAA+CGG | - | chr5_1:21588763-21588782 | None:intergenic | 30.0% | |
| ! | TTCCTAATATATTGGTGCTT+TGG | + | chr5_1:21588764-21588783 | Msa0723710:intron | 30.0% |
| ! | TCCTAATATATTGGTGCTTT+GGG | + | chr5_1:21588765-21588784 | Msa0723710:intron | 30.0% |
| ! | CATCTTATGCTTTTATAGGT+TGG | + | chr5_1:21589020-21589039 | Msa0723710:intron | 30.0% |
| ACTCGATGATTACATCAAAA+AGG | - | chr5_1:21589081-21589100 | None:intergenic | 30.0% | |
| TTTCTCATTCAATTTCCAGT+GGG | - | chr5_1:21589176-21589195 | None:intergenic | 30.0% | |
| ATTTCTCATTCAATTTCCAG+TGG | - | chr5_1:21589177-21589196 | None:intergenic | 30.0% | |
| ! | GTTGAAAGATCCTTGTTATA+TGG | + | chr5_1:21589247-21589266 | Msa0723710:intron | 30.0% |
| ATTTCACTCTCCATATAACA+AGG | - | chr5_1:21589260-21589279 | None:intergenic | 30.0% | |
| GAGTAACTCATAATGTTAAG+CGG | + | chr5_1:21589399-21589418 | Msa0723710:intron | 30.0% | |
| ! | CAGTTTAAAACTGTATGAAG+TGG | + | chr5_1:21589489-21589508 | Msa0723710:intron | 30.0% |
| GAAGTGGTTGAGTTAAAATA+TGG | + | chr5_1:21589505-21589524 | Msa0723710:intron | 30.0% | |
| !!! | CTGAGTTTTAATTTTTCGCT+GGG | + | chr5_1:21589713-21589732 | Msa0723710:CDS | 30.0% |
| !!! | TGAGTTTTAATTTTTCGCTG+GGG | + | chr5_1:21589714-21589733 | Msa0723710:CDS | 30.0% |
| ! | AAGGATTCTGATTAGGATTT+TGG | + | chr5_1:21590062-21590081 | Msa0723710:three_prime_UTR | 30.0% |
| ! | TTGTTATGCTTTTACAGTGT+TGG | + | chr5_1:21590201-21590220 | Msa0723710:three_prime_UTR | 30.0% |
| GATTGAGATATGAGATTTCC+TGG | + | chr5_1:21586813-21586832 | Msa0723710:exon | 35.0% | |
| ! | TTGGGTTTAATGTTTTGTCG+AGG | - | chr5_1:21586896-21586915 | None:intergenic | 35.0% |
| ! | ACTGACTTCTTTGTACCATA+CGG | - | chr5_1:21587047-21587066 | None:intergenic | 35.0% |
| CCTTAAAATCGTAAACGACA+TGG | - | chr5_1:21587075-21587094 | None:intergenic | 35.0% | |
| !! | CCATGTCGTTTACGATTTTA+AGG | + | chr5_1:21587072-21587091 | Msa0723710:CDS | 35.0% |
| AAAACAGCGTTAGTTAGTAG+AGG | - | chr5_1:21587153-21587172 | None:intergenic | 35.0% | |
| ! | AAATTTTCAGATGAAGCGAC+CGG | + | chr5_1:21587318-21587337 | Msa0723710:intron | 35.0% |
| ! | ATACTACTGTTTTCACCTAC+AGG | + | chr5_1:21587466-21587485 | Msa0723710:intron | 35.0% |
| ! | TACTACTGTTTTCACCTACA+GGG | + | chr5_1:21587467-21587486 | Msa0723710:intron | 35.0% |
| !! | TAAGCTTACTGGTTTAAAGC+CGG | - | chr5_1:21587534-21587553 | None:intergenic | 35.0% |
| ! | TAGCGTTTTATGGAGGATTT+CGG | - | chr5_1:21587618-21587637 | None:intergenic | 35.0% |
| AAATCCTCCATAAAACGCTA+TGG | + | chr5_1:21587618-21587637 | Msa0723710:intron | 35.0% | |
| ! | TTTCTTTTGCAAGTGTGAAG+GGG | - | chr5_1:21587646-21587665 | None:intergenic | 35.0% |
| ! | ATCCTGCAATAGCATTTTTC+AGG | + | chr5_1:21587964-21587983 | Msa0723710:intron | 35.0% |
| ATCCTGAAAAATGCTATTGC+AGG | - | chr5_1:21587969-21587988 | None:intergenic | 35.0% | |
| CAATGCATTGCATTCAAAGA+AGG | + | chr5_1:21588144-21588163 | Msa0723710:intron | 35.0% | |
| AAACAGAGAGACATTCAAAG+AGG | - | chr5_1:21588342-21588361 | None:intergenic | 35.0% | |
| ATTGTTGTGGTGATTGTTGA+AGG | + | chr5_1:21588568-21588587 | Msa0723710:intron | 35.0% | |
| ! | CCTAATATATTGGTGCTTTG+GGG | + | chr5_1:21588766-21588785 | Msa0723710:intron | 35.0% |
| TTGATGAAAGGATTCTGATC+AGG | + | chr5_1:21588922-21588941 | Msa0723710:intron | 35.0% | |
| TGATACGAATCAACATGTGA+AGG | - | chr5_1:21588965-21588984 | None:intergenic | 35.0% | |
| !!! | GGTTGGTAGTCTTTTTTTGA+AGG | + | chr5_1:21589037-21589056 | Msa0723710:intron | 35.0% |
| AGCGGCTCATAAATATAAAC+CGG | + | chr5_1:21589417-21589436 | Msa0723710:intron | 35.0% | |
| ATGCAGTTCAGTTAGTAGTT+TGG | + | chr5_1:21589532-21589551 | Msa0723710:intron | 35.0% | |
| !! | TAGGGGTGTTCAAAATATTC+AGG | - | chr5_1:21589566-21589585 | None:intergenic | 35.0% |
| !!! | GCTGAGTTTTAATTTTTCGC+TGG | + | chr5_1:21589712-21589731 | Msa0723710:intron | 35.0% |
| GTTTGTGGATGATAAGGTAA+TGG | + | chr5_1:21589757-21589776 | Msa0723710:CDS | 35.0% | |
| ! | CATTGAGTTGTATCATACTG+TGG | + | chr5_1:21589858-21589877 | Msa0723710:three_prime_UTR | 35.0% |
| CACAAACATGTATCGCTTAT+AGG | - | chr5_1:21589892-21589911 | None:intergenic | 35.0% | |
| ACTCAATGATTGCGTTAGAA+AGG | - | chr5_1:21590262-21590281 | None:intergenic | 35.0% | |
| TTACCCGAGAAGGATTGTTA+GGG | - | chr5_1:21587223-21587242 | None:intergenic | 40.0% | |
| ATTACCCGAGAAGGATTGTT+AGG | - | chr5_1:21587224-21587243 | None:intergenic | 40.0% | |
| CATGGGATAATTGTCTAAGC+AGG | - | chr5_1:21587289-21587308 | None:intergenic | 40.0% | |
| !! | CAATGGCTTTAAAACCCTGT+AGG | - | chr5_1:21587484-21587503 | None:intergenic | 40.0% |
| !!! | CTACAGGGTTTTAAAGCCAT+TGG | + | chr5_1:21587482-21587501 | Msa0723710:intron | 40.0% |
| TACATTCGAGAAACCTACAC+CGG | + | chr5_1:21587512-21587531 | Msa0723710:CDS | 40.0% | |
| GAGAGAGAGAATAAGCTTAC+TGG | - | chr5_1:21587545-21587564 | None:intergenic | 40.0% | |
| TTTCGGCTTCCACTCTAAAT+TGG | + | chr5_1:21587781-21587800 | Msa0723710:intron | 40.0% | |
| AAGAATCAATAAGGGGGGTT+TGG | - | chr5_1:21587821-21587840 | None:intergenic | 40.0% | |
| ! | ATTTTGAATAGCAGCACAGC+TGG | + | chr5_1:21588517-21588536 | Msa0723710:intron | 40.0% |
| ! | CCCCAAAGCACCAATATATT+AGG | - | chr5_1:21588769-21588788 | None:intergenic | 40.0% |
| ! | TGAGATTTTACTCGCGAACT+AGG | + | chr5_1:21588881-21588900 | Msa0723710:intron | 40.0% |
| CATTCAATTTCCAGTGGGAA+GGG | - | chr5_1:21589171-21589190 | None:intergenic | 40.0% | |
| TCATTCAATTTCCAGTGGGA+AGG | - | chr5_1:21589172-21589191 | None:intergenic | 40.0% | |
| CCATGCTCAAACCAAAACAA+AGG | - | chr5_1:21589295-21589314 | None:intergenic | 40.0% | |
| !!! | CCTTTGTTTTGGTTTGAGCA+TGG | + | chr5_1:21589292-21589311 | Msa0723710:intron | 40.0% |
| TGTTGACGCTATATGCTATG+TGG | + | chr5_1:21589588-21589607 | Msa0723710:intron | 40.0% | |
| TATGTTCGACGTTCAGTTTG+TGG | + | chr5_1:21589742-21589761 | Msa0723710:CDS | 40.0% | |
| CGTTCAGTTTGTGGATGATA+AGG | + | chr5_1:21589751-21589770 | Msa0723710:CDS | 40.0% | |
| TAGGTCATATTGCCTCCGTA+TGG | + | chr5_1:21587029-21587048 | Msa0723710:intron | 45.0% | |
| GACTTCTTTGTACCATACGG+AGG | - | chr5_1:21587044-21587063 | None:intergenic | 45.0% | |
| ATGGCCCTAACAATCCTTCT+CGG | + | chr5_1:21587216-21587235 | Msa0723710:CDS | 45.0% | |
| ! | ACGAAGGACTCTGAAAGTTC+CGG | - | chr5_1:21587340-21587359 | None:intergenic | 45.0% |
| GTATCTACCTTGAGATCTGC+TGG | - | chr5_1:21587388-21587407 | None:intergenic | 45.0% | |
| TCGAATGTAGGCATCTCCAA+TGG | - | chr5_1:21587501-21587520 | None:intergenic | 45.0% | |
| GGTGTAGGTTTCTCGAATGT+AGG | - | chr5_1:21587513-21587532 | None:intergenic | 45.0% | |
| !! | TACTGGTTTAAAGCCGGTGT+AGG | - | chr5_1:21587528-21587547 | None:intergenic | 45.0% |
| ATTTCGGCAGTGTTCTACCA+TGG | - | chr5_1:21587602-21587621 | None:intergenic | 45.0% | |
| GTGAATGGGCCAATTTAGAG+TGG | - | chr5_1:21587793-21587812 | None:intergenic | 45.0% | |
| CAATGCATCGTTCCACATAG+AGG | - | chr5_1:21588042-21588061 | None:intergenic | 45.0% | |
| ! | TGCCTGCAAGGCATTCTAAT+CGG | + | chr5_1:21588064-21588083 | Msa0723710:intron | 45.0% |
| CAGAGAGACATTCAAAGAGG+AGG | - | chr5_1:21588339-21588358 | None:intergenic | 45.0% | |
| !! | TGAGTTTTAATCCGCTGCCA+AGG | + | chr5_1:21588384-21588403 | Msa0723710:CDS | 45.0% |
| ATGTCGAACCTATCAGTCCT+TGG | - | chr5_1:21588404-21588423 | None:intergenic | 45.0% | |
| ! | ATTGATGATTCCCTTCCCAC+TGG | + | chr5_1:21589158-21589177 | Msa0723710:intron | 45.0% |
| !! | TGGTTTGAGCATGGTGTTAC+TGG | + | chr5_1:21589301-21589320 | Msa0723710:intron | 45.0% |
| ! | TTACTGGTGTGGTGTTAGAG+TGG | + | chr5_1:21589317-21589336 | Msa0723710:intron | 45.0% |
| ! | TACTGGTGTGGTGTTAGAGT+GGG | + | chr5_1:21589318-21589337 | Msa0723710:intron | 45.0% |
| TGAGAGAGAGATACTGAGTG+AGG | + | chr5_1:21589358-21589377 | Msa0723710:intron | 45.0% | |
| AGAGATACTGAGTGAGGAAG+AGG | + | chr5_1:21589364-21589383 | Msa0723710:intron | 45.0% | |
| GAGATACTGAGTGAGGAAGA+GGG | + | chr5_1:21589365-21589384 | Msa0723710:intron | 45.0% | |
| CATATAGCGTCAACAGCTAG+GGG | - | chr5_1:21589583-21589602 | None:intergenic | 45.0% | |
| GCATATAGCGTCAACAGCTA+GGG | - | chr5_1:21589584-21589603 | None:intergenic | 45.0% | |
| AGCATATAGCGTCAACAGCT+AGG | - | chr5_1:21589585-21589604 | None:intergenic | 45.0% | |
| CGTACTATGATGGTACTTCG+AGG | + | chr5_1:21589954-21589973 | Msa0723710:three_prime_UTR | 45.0% | |
| !! | TTCAAGAGCAAGTGCTGAAG+CGG | - | chr5_1:21590419-21590438 | None:intergenic | 45.0% |
| TTGTCGAGGCGAACGAGAAA+GGG | - | chr5_1:21586882-21586901 | None:intergenic | 50.0% | |
| TTTGTCGAGGCGAACGAGAA+AGG | - | chr5_1:21586883-21586902 | None:intergenic | 50.0% | |
| AGCAAGCAACGAGAGCGATT+GGG | - | chr5_1:21586914-21586933 | None:intergenic | 50.0% | |
| AAGCAAGCAACGAGAGCGAT+TGG | - | chr5_1:21586915-21586934 | None:intergenic | 50.0% | |
| ATCGCTCTCGTTGCTTGCTT+TGG | + | chr5_1:21586915-21586934 | Msa0723710:CDS | 50.0% | |
| ! | CTCGTTGCTTGCTTTGGTGT+AGG | + | chr5_1:21586921-21586940 | Msa0723710:CDS | 50.0% |
| TGGCCCTAACAATCCTTCTC+GGG | + | chr5_1:21587217-21587236 | Msa0723710:CDS | 50.0% | |
| !! | GGTGCCATAGCGTTTTATGG+AGG | - | chr5_1:21587625-21587644 | None:intergenic | 50.0% |
| !!! | AGGGGTGCCATAGCGTTTTA+TGG | - | chr5_1:21587628-21587647 | None:intergenic | 50.0% |
| ! | CAATAAGGGGGGTTTGGAGT+GGG | - | chr5_1:21587815-21587834 | None:intergenic | 50.0% |
| TCAATAAGGGGGGTTTGGAG+TGG | - | chr5_1:21587816-21587835 | None:intergenic | 50.0% | |
| GATTAGAATGCCTTGCAGGC+AGG | - | chr5_1:21588065-21588084 | None:intergenic | 50.0% | |
| ! | GCCTGCAAGGCATTCTAATC+GGG | + | chr5_1:21588065-21588084 | Msa0723710:intron | 50.0% |
| TCCCGATTAGAATGCCTTGC+AGG | - | chr5_1:21588069-21588088 | None:intergenic | 50.0% | |
| AACCTATCAGTCCTTGGCAG+CGG | - | chr5_1:21588398-21588417 | None:intergenic | 50.0% | |
| !! | TGAGCATGGTGTTACTGGTG+TGG | + | chr5_1:21589306-21589325 | Msa0723710:intron | 50.0% |
| ! | GTGTGGTGTTAGAGTGGGAA+GGG | + | chr5_1:21589323-21589342 | Msa0723710:intron | 50.0% |
| AGGTAACTCGCGGTCGTCAT+CGG | - | chr5_1:21586859-21586878 | None:intergenic | 55.0% | |
| CGAGAAAGGGAGGTAACTCG+CGG | - | chr5_1:21586869-21586888 | None:intergenic | 55.0% | |
| AGGGACTCCAGCAGATCTCA+AGG | + | chr5_1:21587378-21587397 | Msa0723710:CDS | 55.0% | |
| ! | GGGGTTTGGAGTGGGTGAAT+GGG | - | chr5_1:21587807-21587826 | None:intergenic | 55.0% |
| ATCCGCTGCCAAGGACTGAT+AGG | + | chr5_1:21588393-21588412 | Msa0723710:CDS | 55.0% | |
| GAATAGCAGCACAGCTGGCT+AGG | + | chr5_1:21588522-21588541 | Msa0723710:intron | 55.0% | |
| ! | GGTGTGGTGTTAGAGTGGGA+AGG | + | chr5_1:21589322-21589341 | Msa0723710:intron | 55.0% |
| ACTGAGTGAGGAAGAGGGAG+AGG | + | chr5_1:21589370-21589389 | Msa0723710:intron | 55.0% | |
| CTGAGTGAGGAAGAGGGAGA+GGG | + | chr5_1:21589371-21589390 | Msa0723710:intron | 55.0% | |
| TGAGTGAGGAAGAGGGAGAG+GGG | + | chr5_1:21589372-21589391 | Msa0723710:intron | 55.0% | |
| GTAACTCGCGGTCGTCATCG+GGG | - | chr5_1:21586857-21586876 | None:intergenic | 60.0% | |
| GGTAACTCGCGGTCGTCATC+GGG | - | chr5_1:21586858-21586877 | None:intergenic | 60.0% | |
| TCGAGGCGAACGAGAAAGGG+AGG | - | chr5_1:21586879-21586898 | None:intergenic | 60.0% | |
| ! | GGGGGTTTGGAGTGGGTGAA+TGG | - | chr5_1:21587808-21587827 | None:intergenic | 60.0% |
| CGATGCATTGCCTGCCTGCA+AGG | + | chr5_1:21588052-21588071 | Msa0723710:intron | 60.0% | |
| GAGTGAGGAAGAGGGAGAGG+GGG | + | chr5_1:21589373-21589392 | Msa0723710:intron | 60.0% | |
| TCGGGGACGGGATCGTAACC+AGG | - | chr5_1:21586834-21586853 | None:intergenic | 65.0% | |
| TCGTCATCGGGGTCGGGGAC+GGG | - | chr5_1:21586846-21586865 | None:intergenic | 70.0% | |
| GTCGTCATCGGGGTCGGGGA+CGG | - | chr5_1:21586847-21586866 | None:intergenic | 70.0% | |
| TCGCGGTCGTCATCGGGGTC+GGG | - | chr5_1:21586852-21586871 | None:intergenic | 70.0% | |
| CTCGCGGTCGTCATCGGGGT+CGG | - | chr5_1:21586853-21586872 | None:intergenic | 70.0% | |
| CGCGGTCGTCATCGGGGTCG+GGG | - | chr5_1:21586851-21586870 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 21586783 | 21590438 | 21586783 | ID=Msa0723710;Name=Msa0723710 |
| chr5_1 | mRNA | 21586783 | 21590438 | 21586783 | ID=Msa0723710-mRNA-1;Parent=Msa0723710;Name=Msa0723710-mRNA-1;_AED=0.19;_eAED=0.19;_QI=39|1|1|1|0.85|0.75|8|621|168 |
| chr5_1 | exon | 21586783 | 21586945 | 21586783 | ID=Msa0723710-mRNA-1:exon:8170;Parent=Msa0723710-mRNA-1 |
| chr5_1 | exon | 21587032 | 21587093 | 21587032 | ID=Msa0723710-mRNA-1:exon:8171;Parent=Msa0723710-mRNA-1 |
| chr5_1 | exon | 21587182 | 21587238 | 21587182 | ID=Msa0723710-mRNA-1:exon:8172;Parent=Msa0723710-mRNA-1 |
| chr5_1 | exon | 21587328 | 21587399 | 21587328 | ID=Msa0723710-mRNA-1:exon:8173;Parent=Msa0723710-mRNA-1 |
| chr5_1 | exon | 21587488 | 21587544 | 21587488 | ID=Msa0723710-mRNA-1:exon:8174;Parent=Msa0723710-mRNA-1 |
| chr5_1 | exon | 21588383 | 21588442 | 21588383 | ID=Msa0723710-mRNA-1:exon:8175;Parent=Msa0723710-mRNA-1 |
| chr5_1 | exon | 21589713 | 21590117 | 21589713 | ID=Msa0723710-mRNA-1:exon:8176;Parent=Msa0723710-mRNA-1 |
| chr5_1 | exon | 21590148 | 21590438 | 21590148 | ID=Msa0723710-mRNA-1:exon:8177;Parent=Msa0723710-mRNA-1 |
| chr5_1 | five_prime_UTR | 21586783 | 21586821 | 21586783 | ID=Msa0723710-mRNA-1:five_prime_utr;Parent=Msa0723710-mRNA-1 |
| chr5_1 | CDS | 21586822 | 21586945 | 21586822 | ID=Msa0723710-mRNA-1:cds;Parent=Msa0723710-mRNA-1 |
| chr5_1 | CDS | 21587032 | 21587093 | 21587032 | ID=Msa0723710-mRNA-1:cds;Parent=Msa0723710-mRNA-1 |
| chr5_1 | CDS | 21587182 | 21587238 | 21587182 | ID=Msa0723710-mRNA-1:cds;Parent=Msa0723710-mRNA-1 |
| chr5_1 | CDS | 21587328 | 21587399 | 21587328 | ID=Msa0723710-mRNA-1:cds;Parent=Msa0723710-mRNA-1 |
| chr5_1 | CDS | 21587488 | 21587544 | 21587488 | ID=Msa0723710-mRNA-1:cds;Parent=Msa0723710-mRNA-1 |
| chr5_1 | CDS | 21588383 | 21588442 | 21588383 | ID=Msa0723710-mRNA-1:cds;Parent=Msa0723710-mRNA-1 |
| chr5_1 | CDS | 21589713 | 21589787 | 21589713 | ID=Msa0723710-mRNA-1:cds;Parent=Msa0723710-mRNA-1 |
| chr5_1 | three_prime_UTR | 21589788 | 21590117 | 21589788 | ID=Msa0723710-mRNA-1:three_prime_utr;Parent=Msa0723710-mRNA-1 |
| chr5_1 | three_prime_UTR | 21590148 | 21590438 | 21590148 | ID=Msa0723710-mRNA-1:three_prime_utr;Parent=Msa0723710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
