AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0145190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145190 MtrunA17_Chr1g0153381 99.200 125 1 0 1 125 1 125 6.34e-88 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145190 AT5G42890.1 79.508 122 25 0 4 125 2 123 1.22e-68 202

Find 45 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATGTATCGAATTATTAT+TGG 0.185639 1_4:-4871274 None:intergenic
CAGGGGTGCAATGAAGATTA+AGG 0.247988 1_4:+4872637 Msa0145190:intron
GTTTCAAGTTTGAAATAGTT+TGG 0.274895 1_4:+4872921 Msa0145190:three_prime_UTR
TGCATCAATCCAAGTATTAA+TGG 0.279783 1_4:-4872987 None:intergenic
GCTCACATCTTGGAAGGCTT+TGG 0.309953 1_4:-4872701 None:intergenic
GACTTTGTTAAGGTTGCATT+AGG 0.316740 1_4:+4872481 Msa0145190:CDS
CTCACATCTTGGAAGGCTTT+GGG 0.353213 1_4:-4872700 None:intergenic
GTATCGAATTATTATTGGTT+TGG 0.368079 1_4:-4871269 None:intergenic
TACACATGACACACAAATAT+AGG 0.417973 1_4:-4873073 None:intergenic
TCAGTTTCAAATTGCTCCTA+AGG 0.429160 1_4:+4871434 Msa0145190:CDS
TACAGATGAAGACTTTGTTA+AGG 0.431661 1_4:+4872471 Msa0145190:CDS
ACAAGTATAGACTTAAATAT+AGG 0.446049 1_4:-4873018 None:intergenic
GAAGGCTTTGGGAAGATATC+CGG 0.454252 1_4:-4872689 None:intergenic
GTAAATGAGAAAGTTGCATC+TGG 0.463722 1_4:-4872451 None:intergenic
ATGAACCCCTCTACAACCTT+AGG 0.464141 1_4:-4872814 None:intergenic
AGACATCTCTGCTCACATCT+TGG 0.471053 1_4:-4872711 None:intergenic
TTTAAGTCTATACTTGTGAA+TGG 0.472623 1_4:+4873024 Msa0145190:three_prime_UTR
AGGGGTGCAATGAAGATTAA+GGG 0.479063 1_4:+4872638 Msa0145190:intron
AGTCTATACTTGTGAATGGT+GGG 0.495737 1_4:+4873028 Msa0145190:three_prime_UTR
GGTTCATGAGAATATAGTTA+TGG 0.510665 1_4:+4872830 Msa0145190:three_prime_UTR
TTAACTATAGATATACTCCT+CGG 0.519064 1_4:-4872773 None:intergenic
ACTTTGTTAAGGTTGCATTA+GGG 0.521418 1_4:+4872482 Msa0145190:CDS
ATCATTCCTAAGGTTGTAGA+GGG 0.524810 1_4:+4872808 Msa0145190:three_prime_UTR
AGTATTATTATAAAAGACAT+TGG 0.528347 1_4:-4872888 None:intergenic
ACGTTAGATCATCATTCCTA+AGG 0.532509 1_4:+4872798 Msa0145190:three_prime_UTR
TAACTATAGATATACTCCTC+GGG 0.535611 1_4:-4872772 None:intergenic
AAGTCTATACTTGTGAATGG+TGG 0.536430 1_4:+4873027 Msa0145190:three_prime_UTR
AATATAGTTATGGATAATGA+AGG 0.544077 1_4:+4872840 Msa0145190:three_prime_UTR
TTCTCCTTTCTTGAGATCAA+CGG 0.549718 1_4:-4871575 None:intergenic
TATATAGGGGCATATGAAGG+TGG 0.550169 1_4:+4872424 Msa0145190:intron
CATCATTCCTAAGGTTGTAG+AGG 0.560169 1_4:+4872807 Msa0145190:three_prime_UTR
GTGTATATAGGGGCATATGA+AGG 0.563217 1_4:+4872421 Msa0145190:intron
TATACCGTTGATCTCAAGAA+AGG 0.565878 1_4:+4871571 Msa0145190:CDS
ATATAGGGGCATATGAAGGT+GGG 0.567168 1_4:+4872425 Msa0145190:intron
ATCCACAGATTGCTTTCATG+AGG 0.575757 1_4:+4872512 Msa0145190:CDS
ATCTCTGCTCACATCTTGGA+AGG 0.575766 1_4:-4872707 None:intergenic
TGCTGCTCAGAAATTTACTC+CGG 0.597894 1_4:+4872670 Msa0145190:CDS
AACCTCATGAAAGCAATCTG+TGG 0.609703 1_4:-4872514 None:intergenic
TATAGGCAAAGATAGTGAGA+TGG 0.621637 1_4:-4873056 None:intergenic
ATTCGATGATGAATCAGCCA+TGG 0.650427 1_4:-4871322 None:intergenic
AAGAAAGGAGAAGTTACCAA+AGG 0.658788 1_4:+4871586 Msa0145190:CDS
CATTCACGCAACAACCACCA+TGG 0.668642 1_4:+4871305 Msa0145190:exon
ATACATAACCTCAAAACCCG+AGG 0.681473 1_4:+4872756 Msa0145190:three_prime_UTR
CGATGATGAATCAGCCATGG+TGG 0.701070 1_4:-4871319 None:intergenic
TCATTCCTAAGGTTGTAGAG+GGG 0.713874 1_4:+4872809 Msa0145190:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAGATTTTCATTATATTA+AGG + chr1_4:4871833-4871852 Msa0145190:intron 10.0%
!!! TATTTAAAATATGAATAAAG+AGG + chr1_4:4871996-4872015 Msa0145190:intron 10.0%
!!! TATAGATTTTCATTATATTA+AGG + chr1_4:4871833-4871852 Msa0145190:intron 10.0%
!!! TATTTAAAATATGAATAAAG+AGG + chr1_4:4871996-4872015 Msa0145190:intron 10.0%
!! TGAAATAATAAAGAAGAAAA+AGG - chr1_4:4871461-4871480 None:intergenic 15.0%
!! AGTATTATTATAAAAGACAT+TGG - chr1_4:4872891-4872910 None:intergenic 15.0%
!!! TTTTATAATAATACTGTAGT+TGG + chr1_4:4872896-4872915 Msa0145190:three_prime_UTR 15.0%
!! TGAAATAATAAAGAAGAAAA+AGG - chr1_4:4871461-4871480 None:intergenic 15.0%
!! AGTATTATTATAAAAGACAT+TGG - chr1_4:4872891-4872910 None:intergenic 15.0%
!!! TTTTATAATAATACTGTAGT+TGG + chr1_4:4872896-4872915 Msa0145190:three_prime_UTR 15.0%
!!! ATTATTATTGGTTTGGTTTT+TGG - chr1_4:4871265-4871284 None:intergenic 20.0%
!! GAAATGTATCGAATTATTAT+TGG - chr1_4:4871277-4871296 None:intergenic 20.0%
!! ACAAGAAGAGATTATAATTT+AGG - chr1_4:4871513-4871532 None:intergenic 20.0%
!! AGAAAAATGAAATTAACCTT+TGG - chr1_4:4871605-4871624 None:intergenic 20.0%
!! TGAATCAAATTGAATTGAAA+AGG - chr1_4:4871634-4871653 None:intergenic 20.0%
!!! GTTGAAAGTATCTAATATTT+TGG + chr1_4:4871702-4871721 Msa0145190:intron 20.0%
!!! CTTTTTTCTACAATTATACT+TGG + chr1_4:4872214-4872233 Msa0145190:intron 20.0%
!!! ATTAAAATTAACCAAGTTGA+TGG - chr1_4:4872354-4872373 None:intergenic 20.0%
!! AAATAATCATACATTAAGGA+TGG - chr1_4:4872397-4872416 None:intergenic 20.0%
!! ATCCTTAATGTATGATTATT+TGG + chr1_4:4872396-4872415 Msa0145190:intron 20.0%
!! AACCAAATAATCATACATTA+AGG - chr1_4:4872401-4872420 None:intergenic 20.0%
!! ATTATTTGGTTGTGTATATA+GGG + chr1_4:4872410-4872429 Msa0145190:intron 20.0%
!! AATATAGTTATGGATAATGA+AGG + chr1_4:4872840-4872859 Msa0145190:three_prime_UTR 20.0%
!! ACAAGTATAGACTTAAATAT+AGG - chr1_4:4873021-4873040 None:intergenic 20.0%
!!! ATTATTATTGGTTTGGTTTT+TGG - chr1_4:4871265-4871284 None:intergenic 20.0%
!! GAAATGTATCGAATTATTAT+TGG - chr1_4:4871277-4871296 None:intergenic 20.0%
!! ACAAGAAGAGATTATAATTT+AGG - chr1_4:4871513-4871532 None:intergenic 20.0%
!! AGAAAAATGAAATTAACCTT+TGG - chr1_4:4871605-4871624 None:intergenic 20.0%
!! TGAATCAAATTGAATTGAAA+AGG - chr1_4:4871634-4871653 None:intergenic 20.0%
!!! GTTGAAAGTATCTAATATTT+TGG + chr1_4:4871702-4871721 Msa0145190:intron 20.0%
!!! CTTTTTTCTACAATTATACT+TGG + chr1_4:4872214-4872233 Msa0145190:intron 20.0%
!!! ATTAAAATTAACCAAGTTGA+TGG - chr1_4:4872354-4872373 None:intergenic 20.0%
!! AAATAATCATACATTAAGGA+TGG - chr1_4:4872397-4872416 None:intergenic 20.0%
!! ATCCTTAATGTATGATTATT+TGG + chr1_4:4872396-4872415 Msa0145190:intron 20.0%
!! AACCAAATAATCATACATTA+AGG - chr1_4:4872401-4872420 None:intergenic 20.0%
!! ATTATTTGGTTGTGTATATA+GGG + chr1_4:4872410-4872429 Msa0145190:intron 20.0%
!! AATATAGTTATGGATAATGA+AGG + chr1_4:4872840-4872859 Msa0145190:three_prime_UTR 20.0%
!! ACAAGTATAGACTTAAATAT+AGG - chr1_4:4873021-4873040 None:intergenic 20.0%
!! AATGATTTTGCTTCTTTCTT+CGG - chr1_4:4871224-4871243 None:intergenic 25.0%
!! GTATCGAATTATTATTGGTT+TGG - chr1_4:4871272-4871291 None:intergenic 25.0%
! AAAAAACTCACCGAAAAAAT+TGG + chr1_4:4871402-4871421 Msa0145190:CDS 25.0%
!!! ATAAACGAGACCAATTTTTT+CGG - chr1_4:4871415-4871434 None:intergenic 25.0%
!! TTGTGAATTTTGCAGAAAAT+TGG + chr1_4:4871532-4871551 Msa0145190:intron 25.0%
!!! ATTGTTCTGAAATTGCTTTA+AGG + chr1_4:4871680-4871699 Msa0145190:intron 25.0%
!! AACCATAATGTCAAGATTTT+AGG + chr1_4:4871751-4871770 Msa0145190:intron 25.0%
! ATCCTAAAATCTTGACATTA+TGG - chr1_4:4871756-4871775 None:intergenic 25.0%
!!! TAATTAGGTTGGTAAAGATA+GGG + chr1_4:4871933-4871952 Msa0145190:intron 25.0%
!! AAGGTAAAATGATTTGTGTT+TGG + chr1_4:4872276-4872295 Msa0145190:intron 25.0%
!!! TATTTTGGTCCACTTTTATA+GGG - chr1_4:4872329-4872348 None:intergenic 25.0%
!!! ATATTTTGGTCCACTTTTAT+AGG - chr1_4:4872330-4872349 None:intergenic 25.0%
! GATTATTTGGTTGTGTATAT+AGG + chr1_4:4872409-4872428 Msa0145190:intron 25.0%
! TTATTTGGTTGTGTATATAG+GGG + chr1_4:4872411-4872430 Msa0145190:intron 25.0%
! TAAACAAAGAAAAGCCAAAA+CGG - chr1_4:4872576-4872595 None:intergenic 25.0%
! TTAACTATAGATATACTCCT+CGG - chr1_4:4872776-4872795 None:intergenic 25.0%
!!! GTTTCAAGTTTGAAATAGTT+TGG + chr1_4:4872921-4872940 Msa0145190:three_prime_UTR 25.0%
! AGTATTAATGGCAAAAACAA+TGG - chr1_4:4872978-4872997 None:intergenic 25.0%
!!! TTGTTTTTGCCATTAATACT+TGG + chr1_4:4872978-4872997 Msa0145190:three_prime_UTR 25.0%
! TTTAAGTCTATACTTGTGAA+TGG + chr1_4:4873024-4873043 Msa0145190:three_prime_UTR 25.0%
! TTGTATTTATAATGCTGTCA+TGG - chr1_4:4871197-4871216 None:intergenic 25.0%
!! AATGATTTTGCTTCTTTCTT+CGG - chr1_4:4871224-4871243 None:intergenic 25.0%
!! GTATCGAATTATTATTGGTT+TGG - chr1_4:4871272-4871291 None:intergenic 25.0%
! AAAAAACTCACCGAAAAAAT+TGG + chr1_4:4871402-4871421 Msa0145190:CDS 25.0%
!!! ATAAACGAGACCAATTTTTT+CGG - chr1_4:4871415-4871434 None:intergenic 25.0%
!! TTGTGAATTTTGCAGAAAAT+TGG + chr1_4:4871532-4871551 Msa0145190:intron 25.0%
!!! ATTGTTCTGAAATTGCTTTA+AGG + chr1_4:4871680-4871699 Msa0145190:intron 25.0%
!! AACCATAATGTCAAGATTTT+AGG + chr1_4:4871751-4871770 Msa0145190:intron 25.0%
! ATCCTAAAATCTTGACATTA+TGG - chr1_4:4871756-4871775 None:intergenic 25.0%
!!! TAATTAGGTTGGTAAAGATA+GGG + chr1_4:4871933-4871952 Msa0145190:intron 25.0%
!! AAGGTAAAATGATTTGTGTT+TGG + chr1_4:4872276-4872295 Msa0145190:intron 25.0%
!!! TATTTTGGTCCACTTTTATA+GGG - chr1_4:4872329-4872348 None:intergenic 25.0%
!!! ATATTTTGGTCCACTTTTAT+AGG - chr1_4:4872330-4872349 None:intergenic 25.0%
! GATTATTTGGTTGTGTATAT+AGG + chr1_4:4872409-4872428 Msa0145190:intron 25.0%
! TTATTTGGTTGTGTATATAG+GGG + chr1_4:4872411-4872430 Msa0145190:intron 25.0%
! TAAACAAAGAAAAGCCAAAA+CGG - chr1_4:4872576-4872595 None:intergenic 25.0%
! TTAACTATAGATATACTCCT+CGG - chr1_4:4872776-4872795 None:intergenic 25.0%
!!! GTTTCAAGTTTGAAATAGTT+TGG + chr1_4:4872921-4872940 Msa0145190:three_prime_UTR 25.0%
! AGTATTAATGGCAAAAACAA+TGG - chr1_4:4872978-4872997 None:intergenic 25.0%
!!! TTGTTTTTGCCATTAATACT+TGG + chr1_4:4872978-4872997 Msa0145190:three_prime_UTR 25.0%
! TTTAAGTCTATACTTGTGAA+TGG + chr1_4:4873024-4873043 Msa0145190:three_prime_UTR 25.0%
!!! TTTGGTTTTTGGTTGTTGAA+TGG - chr1_4:4871254-4871273 None:intergenic 30.0%
TAAAGAAGAAAAAGGACCTT+AGG - chr1_4:4871453-4871472 None:intergenic 30.0%
AATTGTAGTTACTGATGCAT+TGG + chr1_4:4871799-4871818 Msa0145190:intron 30.0%
!! GTAATTAGGTTGGTAAAGAT+AGG + chr1_4:4871932-4871951 Msa0145190:intron 30.0%
TGAATAAAGAGGTTGAAATC+TGG + chr1_4:4872007-4872026 Msa0145190:intron 30.0%
TAGATGCTTTCGATCTATTT+AGG + chr1_4:4872108-4872127 Msa0145190:intron 30.0%
TAGGTTATAGATTGTTGTCT+AGG + chr1_4:4872127-4872146 Msa0145190:intron 30.0%
! TATGACTAAAAGTGAGTTGA+AGG + chr1_4:4872257-4872276 Msa0145190:intron 30.0%
! AATTTTGTCCCCTATAAAAG+TGG + chr1_4:4872317-4872336 Msa0145190:intron 30.0%
!! ATTTTGGTCCACTTTTATAG+GGG - chr1_4:4872328-4872347 None:intergenic 30.0%
TACAGATGAAGACTTTGTTA+AGG + chr1_4:4872471-4872490 Msa0145190:CDS 30.0%
ACTTTGTTAAGGTTGCATTA+GGG + chr1_4:4872482-4872501 Msa0145190:CDS 30.0%
!!! TGTTCTCTTTTTTTCCGTTT+TGG + chr1_4:4872559-4872578 Msa0145190:intron 30.0%
AATAGATACAAGGAAGTGAA+TGG - chr1_4:4872600-4872619 None:intergenic 30.0%
TAACTATAGATATACTCCTC+GGG - chr1_4:4872775-4872794 None:intergenic 30.0%
GGTTCATGAGAATATAGTTA+TGG + chr1_4:4872830-4872849 Msa0145190:three_prime_UTR 30.0%
TGCATCAATCCAAGTATTAA+TGG - chr1_4:4872990-4873009 None:intergenic 30.0%
TACACATGACACACAAATAT+AGG - chr1_4:4873076-4873095 None:intergenic 30.0%
!!! TTTGGTTTTTGGTTGTTGAA+TGG - chr1_4:4871254-4871273 None:intergenic 30.0%
TAAAGAAGAAAAAGGACCTT+AGG - chr1_4:4871453-4871472 None:intergenic 30.0%
AATTGTAGTTACTGATGCAT+TGG + chr1_4:4871799-4871818 Msa0145190:intron 30.0%
!! GTAATTAGGTTGGTAAAGAT+AGG + chr1_4:4871932-4871951 Msa0145190:intron 30.0%
TGAATAAAGAGGTTGAAATC+TGG + chr1_4:4872007-4872026 Msa0145190:intron 30.0%
TAGATGCTTTCGATCTATTT+AGG + chr1_4:4872108-4872127 Msa0145190:intron 30.0%
TAGGTTATAGATTGTTGTCT+AGG + chr1_4:4872127-4872146 Msa0145190:intron 30.0%
! TATGACTAAAAGTGAGTTGA+AGG + chr1_4:4872257-4872276 Msa0145190:intron 30.0%
! AATTTTGTCCCCTATAAAAG+TGG + chr1_4:4872317-4872336 Msa0145190:intron 30.0%
!! ATTTTGGTCCACTTTTATAG+GGG - chr1_4:4872328-4872347 None:intergenic 30.0%
TACAGATGAAGACTTTGTTA+AGG + chr1_4:4872471-4872490 Msa0145190:CDS 30.0%
ACTTTGTTAAGGTTGCATTA+GGG + chr1_4:4872482-4872501 Msa0145190:CDS 30.0%
!!! TGTTCTCTTTTTTTCCGTTT+TGG + chr1_4:4872559-4872578 Msa0145190:intron 30.0%
AATAGATACAAGGAAGTGAA+TGG - chr1_4:4872600-4872619 None:intergenic 30.0%
TAACTATAGATATACTCCTC+GGG - chr1_4:4872775-4872794 None:intergenic 30.0%
GGTTCATGAGAATATAGTTA+TGG + chr1_4:4872830-4872849 Msa0145190:three_prime_UTR 30.0%
TGCATCAATCCAAGTATTAA+TGG - chr1_4:4872990-4873009 None:intergenic 30.0%
TACACATGACACACAAATAT+AGG - chr1_4:4873076-4873095 None:intergenic 30.0%
TCAGTTTCAAATTGCTCCTA+AGG + chr1_4:4871434-4871453 Msa0145190:CDS 35.0%
TATACCGTTGATCTCAAGAA+AGG + chr1_4:4871571-4871590 Msa0145190:CDS 35.0%
TTCTCCTTTCTTGAGATCAA+CGG - chr1_4:4871578-4871597 None:intergenic 35.0%
AAGAAAGGAGAAGTTACCAA+AGG + chr1_4:4871586-4871605 Msa0145190:CDS 35.0%
TTAGCTGCAATTTAGACCTA+TGG + chr1_4:4871882-4871901 Msa0145190:intron 35.0%
GAATCTGGATGTAATTAGGT+TGG + chr1_4:4871922-4871941 Msa0145190:intron 35.0%
!! AGATCGAAAGCATCTAATCA+CGG - chr1_4:4872104-4872123 None:intergenic 35.0%
ACCAAAATATGCCATCAACT+TGG + chr1_4:4872340-4872359 Msa0145190:intron 35.0%
!!! ACCAAGTTGATGGCATATTT+TGG - chr1_4:4872344-4872363 None:intergenic 35.0%
TACATTAAGGATGGCATTGT+AGG - chr1_4:4872388-4872407 None:intergenic 35.0%
GTAAATGAGAAAGTTGCATC+TGG - chr1_4:4872454-4872473 None:intergenic 35.0%
GACTTTGTTAAGGTTGCATT+AGG + chr1_4:4872481-4872500 Msa0145190:CDS 35.0%
TCACTTCCTTGTATCTATTG+TGG + chr1_4:4872601-4872620 Msa0145190:intron 35.0%
ACGTTAGATCATCATTCCTA+AGG + chr1_4:4872798-4872817 Msa0145190:three_prime_UTR 35.0%
ATCATTCCTAAGGTTGTAGA+GGG + chr1_4:4872808-4872827 Msa0145190:three_prime_UTR 35.0%
AAGTCTATACTTGTGAATGG+TGG + chr1_4:4873027-4873046 Msa0145190:three_prime_UTR 35.0%
AGTCTATACTTGTGAATGGT+GGG + chr1_4:4873028-4873047 Msa0145190:three_prime_UTR 35.0%
TATAGGCAAAGATAGTGAGA+TGG - chr1_4:4873059-4873078 None:intergenic 35.0%
TCAGTTTCAAATTGCTCCTA+AGG + chr1_4:4871434-4871453 Msa0145190:CDS 35.0%
TATACCGTTGATCTCAAGAA+AGG + chr1_4:4871571-4871590 Msa0145190:CDS 35.0%
TTCTCCTTTCTTGAGATCAA+CGG - chr1_4:4871578-4871597 None:intergenic 35.0%
AAGAAAGGAGAAGTTACCAA+AGG + chr1_4:4871586-4871605 Msa0145190:CDS 35.0%
TTAGCTGCAATTTAGACCTA+TGG + chr1_4:4871882-4871901 Msa0145190:intron 35.0%
GAATCTGGATGTAATTAGGT+TGG + chr1_4:4871922-4871941 Msa0145190:intron 35.0%
!! AGATCGAAAGCATCTAATCA+CGG - chr1_4:4872104-4872123 None:intergenic 35.0%
ACCAAAATATGCCATCAACT+TGG + chr1_4:4872340-4872359 Msa0145190:intron 35.0%
!!! ACCAAGTTGATGGCATATTT+TGG - chr1_4:4872344-4872363 None:intergenic 35.0%
TACATTAAGGATGGCATTGT+AGG - chr1_4:4872388-4872407 None:intergenic 35.0%
GTAAATGAGAAAGTTGCATC+TGG - chr1_4:4872454-4872473 None:intergenic 35.0%
GACTTTGTTAAGGTTGCATT+AGG + chr1_4:4872481-4872500 Msa0145190:CDS 35.0%
TCACTTCCTTGTATCTATTG+TGG + chr1_4:4872601-4872620 Msa0145190:intron 35.0%
ACGTTAGATCATCATTCCTA+AGG + chr1_4:4872798-4872817 Msa0145190:three_prime_UTR 35.0%
ATCATTCCTAAGGTTGTAGA+GGG + chr1_4:4872808-4872827 Msa0145190:three_prime_UTR 35.0%
AAGTCTATACTTGTGAATGG+TGG + chr1_4:4873027-4873046 Msa0145190:three_prime_UTR 35.0%
AGTCTATACTTGTGAATGGT+GGG + chr1_4:4873028-4873047 Msa0145190:three_prime_UTR 35.0%
TATAGGCAAAGATAGTGAGA+TGG - chr1_4:4873059-4873078 None:intergenic 35.0%
ATTCGATGATGAATCAGCCA+TGG - chr1_4:4871325-4871344 None:intergenic 40.0%
GCGTGAATCTGGATGTAATT+AGG + chr1_4:4871918-4871937 Msa0145190:intron 40.0%
!! GGTTGGTAAAGATAGGGATT+TGG + chr1_4:4871939-4871958 Msa0145190:intron 40.0%
CTGGACAGTCCAATCTTAAT+CGG + chr1_4:4872026-4872045 Msa0145190:intron 40.0%
TCCAATCTTAATCGGATGTG+AGG + chr1_4:4872034-4872053 Msa0145190:intron 40.0%
ACCTCACATCCGATTAAGAT+TGG - chr1_4:4872038-4872057 None:intergenic 40.0%
AATCTTAATCGGATGTGAGG+TGG + chr1_4:4872037-4872056 Msa0145190:intron 40.0%
GCATCTAATCACGGAAGATA+TGG - chr1_4:4872095-4872114 None:intergenic 40.0%
TAGATTGTTGTCTAGGTAGC+TGG + chr1_4:4872134-4872153 Msa0145190:intron 40.0%
! GTGTATATAGGGGCATATGA+AGG + chr1_4:4872421-4872440 Msa0145190:intron 40.0%
! TATATAGGGGCATATGAAGG+TGG + chr1_4:4872424-4872443 Msa0145190:intron 40.0%
! ATATAGGGGCATATGAAGGT+GGG + chr1_4:4872425-4872444 Msa0145190:intron 40.0%
ATCCACAGATTGCTTTCATG+AGG + chr1_4:4872512-4872531 Msa0145190:CDS 40.0%
AACCTCATGAAAGCAATCTG+TGG - chr1_4:4872517-4872536 None:intergenic 40.0%
CTTCCTTGTATCTATTGTGG+TGG + chr1_4:4872604-4872623 Msa0145190:intron 40.0%
ACACCACCACAATAGATACA+AGG - chr1_4:4872610-4872629 None:intergenic 40.0%
! TTGTGGTGGTGTATGAATAC+AGG + chr1_4:4872618-4872637 Msa0145190:intron 40.0%
! TGTGGTGGTGTATGAATACA+GGG + chr1_4:4872619-4872638 Msa0145190:intron 40.0%
! AGGGGTGCAATGAAGATTAA+GGG + chr1_4:4872638-4872657 Msa0145190:intron 40.0%
TGCTGCTCAGAAATTTACTC+CGG + chr1_4:4872670-4872689 Msa0145190:CDS 40.0%
ATACATAACCTCAAAACCCG+AGG + chr1_4:4872756-4872775 Msa0145190:three_prime_UTR 40.0%
CATCATTCCTAAGGTTGTAG+AGG + chr1_4:4872807-4872826 Msa0145190:three_prime_UTR 40.0%
TCATTCCTAAGGTTGTAGAG+GGG + chr1_4:4872809-4872828 Msa0145190:three_prime_UTR 40.0%
ATTCGATGATGAATCAGCCA+TGG - chr1_4:4871325-4871344 None:intergenic 40.0%
GCGTGAATCTGGATGTAATT+AGG + chr1_4:4871918-4871937 Msa0145190:intron 40.0%
!! GGTTGGTAAAGATAGGGATT+TGG + chr1_4:4871939-4871958 Msa0145190:intron 40.0%
CTGGACAGTCCAATCTTAAT+CGG + chr1_4:4872026-4872045 Msa0145190:intron 40.0%
TCCAATCTTAATCGGATGTG+AGG + chr1_4:4872034-4872053 Msa0145190:intron 40.0%
ACCTCACATCCGATTAAGAT+TGG - chr1_4:4872038-4872057 None:intergenic 40.0%
AATCTTAATCGGATGTGAGG+TGG + chr1_4:4872037-4872056 Msa0145190:intron 40.0%
GCATCTAATCACGGAAGATA+TGG - chr1_4:4872095-4872114 None:intergenic 40.0%
TAGATTGTTGTCTAGGTAGC+TGG + chr1_4:4872134-4872153 Msa0145190:intron 40.0%
! GTGTATATAGGGGCATATGA+AGG + chr1_4:4872421-4872440 Msa0145190:intron 40.0%
! TATATAGGGGCATATGAAGG+TGG + chr1_4:4872424-4872443 Msa0145190:intron 40.0%
! ATATAGGGGCATATGAAGGT+GGG + chr1_4:4872425-4872444 Msa0145190:intron 40.0%
ATCCACAGATTGCTTTCATG+AGG + chr1_4:4872512-4872531 Msa0145190:CDS 40.0%
AACCTCATGAAAGCAATCTG+TGG - chr1_4:4872517-4872536 None:intergenic 40.0%
CTTCCTTGTATCTATTGTGG+TGG + chr1_4:4872604-4872623 Msa0145190:intron 40.0%
ACACCACCACAATAGATACA+AGG - chr1_4:4872610-4872629 None:intergenic 40.0%
! TTGTGGTGGTGTATGAATAC+AGG + chr1_4:4872618-4872637 Msa0145190:intron 40.0%
! TGTGGTGGTGTATGAATACA+GGG + chr1_4:4872619-4872638 Msa0145190:intron 40.0%
! AGGGGTGCAATGAAGATTAA+GGG + chr1_4:4872638-4872657 Msa0145190:intron 40.0%
TGCTGCTCAGAAATTTACTC+CGG + chr1_4:4872670-4872689 Msa0145190:CDS 40.0%
ATACATAACCTCAAAACCCG+AGG + chr1_4:4872756-4872775 Msa0145190:three_prime_UTR 40.0%
CATCATTCCTAAGGTTGTAG+AGG + chr1_4:4872807-4872826 Msa0145190:three_prime_UTR 40.0%
TCATTCCTAAGGTTGTAGAG+GGG + chr1_4:4872809-4872828 Msa0145190:three_prime_UTR 40.0%
CGGAAGATATGGAAATCACC+AGG - chr1_4:4872084-4872103 None:intergenic 45.0%
! GTGGTGGTGTATGAATACAG+GGG + chr1_4:4872620-4872639 Msa0145190:intron 45.0%
! CAGGGGTGCAATGAAGATTA+AGG + chr1_4:4872637-4872656 Msa0145190:intron 45.0%
!! GAAGGCTTTGGGAAGATATC+CGG - chr1_4:4872692-4872711 None:intergenic 45.0%
CTCACATCTTGGAAGGCTTT+GGG - chr1_4:4872703-4872722 None:intergenic 45.0%
ATCTCTGCTCACATCTTGGA+AGG - chr1_4:4872710-4872729 None:intergenic 45.0%
AGACATCTCTGCTCACATCT+TGG - chr1_4:4872714-4872733 None:intergenic 45.0%
! GATATACTCCTCGGGTTTTG+AGG - chr1_4:4872767-4872786 None:intergenic 45.0%
ATGAACCCCTCTACAACCTT+AGG - chr1_4:4872817-4872836 None:intergenic 45.0%
CGGAAGATATGGAAATCACC+AGG - chr1_4:4872084-4872103 None:intergenic 45.0%
! GTGGTGGTGTATGAATACAG+GGG + chr1_4:4872620-4872639 Msa0145190:intron 45.0%
! CAGGGGTGCAATGAAGATTA+AGG + chr1_4:4872637-4872656 Msa0145190:intron 45.0%
!! GAAGGCTTTGGGAAGATATC+CGG - chr1_4:4872692-4872711 None:intergenic 45.0%
CTCACATCTTGGAAGGCTTT+GGG - chr1_4:4872703-4872722 None:intergenic 45.0%
ATCTCTGCTCACATCTTGGA+AGG - chr1_4:4872710-4872729 None:intergenic 45.0%
AGACATCTCTGCTCACATCT+TGG - chr1_4:4872714-4872733 None:intergenic 45.0%
! GATATACTCCTCGGGTTTTG+AGG - chr1_4:4872767-4872786 None:intergenic 45.0%
ATGAACCCCTCTACAACCTT+AGG - chr1_4:4872817-4872836 None:intergenic 45.0%
!!! ATTTTAAATAAATCAAAATA+TGG - chr1_4:4871986-4872005 None:intergenic 5.0%
!!! ATTTTAAATAAATCAAAATA+TGG - chr1_4:4871986-4872005 None:intergenic 5.0%
CATTCACGCAACAACCACCA+TGG + chr1_4:4871305-4871324 Msa0145190:exon 50.0%
CGATGATGAATCAGCCATGG+TGG - chr1_4:4871322-4871341 None:intergenic 50.0%
!!! GGTGAGTTTTTTGCCAGCGT+CGG - chr1_4:4871394-4871413 None:intergenic 50.0%
CGCACACATTGCTCATCCAT+AGG - chr1_4:4871901-4871920 None:intergenic 50.0%
GAGCAATGTGTGCGTGAATC+TGG + chr1_4:4871907-4871926 Msa0145190:intron 50.0%
GCTCACATCTTGGAAGGCTT+TGG - chr1_4:4872704-4872723 None:intergenic 50.0%
CATTCACGCAACAACCACCA+TGG + chr1_4:4871305-4871324 Msa0145190:exon 50.0%
CGATGATGAATCAGCCATGG+TGG - chr1_4:4871322-4871341 None:intergenic 50.0%
!!! GGTGAGTTTTTTGCCAGCGT+CGG - chr1_4:4871394-4871413 None:intergenic 50.0%
CGCACACATTGCTCATCCAT+AGG - chr1_4:4871901-4871920 None:intergenic 50.0%
GAGCAATGTGTGCGTGAATC+TGG + chr1_4:4871907-4871926 Msa0145190:intron 50.0%
GCTCACATCTTGGAAGGCTT+TGG - chr1_4:4872704-4872723 None:intergenic 50.0%
! CAACACTTTTCCACCGACGC+TGG + chr1_4:4871378-4871397 Msa0145190:CDS 55.0%
!!! GAGTTTTTTGCCAGCGTCGG+TGG - chr1_4:4871391-4871410 None:intergenic 55.0%
! CAACACTTTTCCACCGACGC+TGG + chr1_4:4871378-4871397 Msa0145190:CDS 55.0%
!!! GAGTTTTTTGCCAGCGTCGG+TGG - chr1_4:4871391-4871410 None:intergenic 55.0%
ACCAGGTGACTGCACGCAGT+CGG - chr1_4:4872067-4872086 None:intergenic 60.0%
ACCAGGTGACTGCACGCAGT+CGG - chr1_4:4872067-4872086 None:intergenic 60.0%
TCCGACTGCGTGCAGTCACC+TGG + chr1_4:4872063-4872082 Msa0145190:intron 65.0%
TCCGACTGCGTGCAGTCACC+TGG + chr1_4:4872063-4872082 Msa0145190:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 4871197 4873108 4871197 ID=Msa0145190;Name=Msa0145190
chr1_4 mRNA 4871197 4873108 4871197 ID=Msa0145190-mRNA-1;Parent=Msa0145190;Name=Msa0145190-mRNA-1;_AED=0.04;_eAED=0.04;_QI=127|1|1|1|1|1|4|387|125
chr1_4 exon 4871197 4871455 4871197 ID=Msa0145190-mRNA-1:exon:2017;Parent=Msa0145190-mRNA-1
chr1_4 exon 4871547 4871607 4871547 ID=Msa0145190-mRNA-1:exon:2018;Parent=Msa0145190-mRNA-1
chr1_4 exon 4872431 4872533 4872431 ID=Msa0145190-mRNA-1:exon:2019;Parent=Msa0145190-mRNA-1
chr1_4 exon 4872640 4873108 4872640 ID=Msa0145190-mRNA-1:exon:2020;Parent=Msa0145190-mRNA-1
chr1_4 five_prime_UTR 4871197 4871323 4871197 ID=Msa0145190-mRNA-1:five_prime_utr;Parent=Msa0145190-mRNA-1
chr1_4 CDS 4871324 4871455 4871324 ID=Msa0145190-mRNA-1:cds;Parent=Msa0145190-mRNA-1
chr1_4 CDS 4871547 4871607 4871547 ID=Msa0145190-mRNA-1:cds;Parent=Msa0145190-mRNA-1
chr1_4 CDS 4872431 4872533 4872431 ID=Msa0145190-mRNA-1:cds;Parent=Msa0145190-mRNA-1
chr1_4 CDS 4872640 4872721 4872640 ID=Msa0145190-mRNA-1:cds;Parent=Msa0145190-mRNA-1
chr1_4 three_prime_UTR 4872722 4873108 4872722 ID=Msa0145190-mRNA-1:three_prime_utr;Parent=Msa0145190-mRNA-1
Gene Sequence

>Msa0145190

ATGGCTGATTCATCATCGAATCTGAAATCAGAAGCGATAATCGACTTAATGAAACAACACTTTTCCACCGACGCTGGCAAAAAACTCACCGAAAAAATTGGTCTCGTTTATCAGTTTCAAATTGCTCCTAAGAAAATTGGAATCAATGAAGTTACATATACCGTTGATCTCAAGAAAGGAGAAGTTACCAAAGGGGCATATGAAGGTGGGAAGCCAGATGCAACTTTCTCATTTACAGATGAAGACTTTGTTAAGGTTGCATTAGGGAAGATGAATCCACAGATTGCTTTCATGAGGGGTGCAATGAAGATTAAGGGAAGTTTGAGTGCTGCTCAGAAATTTACTCCGGATATCTTCCCAAAGCCTTCCAAGATGTGA

Protein sequence

>Msa0145190

MADSSSNLKSEAIIDLMKQHFSTDAGKKLTEKIGLVYQFQIAPKKIGINEVTYTVDLKKGEVTKGAYEGGKPDATFSFTDEDFVKVALGKMNPQIAFMRGAMKIKGSLSAAQKFTPDIFPKPSKM*