AlfalfaGEDB | Msa0145190

M. sativa cultivar zhongmu-4 / Msa0145190

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0019752 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0032502 GO:0032787 GO:0035556 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120
PFAM: PF02036.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145190	XP_003589185.1	99.200	125	1	0	1	125	1	125	6.89e-84	251

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145190	sp\|Q9FMN0\|SCP2_ARATH	79.508	122	25	0	4	125	2	123	1.20e-67	202

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145190	G7I3K1	99.200	125	1	0	1	125	1	125	3.29e-84	251

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015130	Msa0145190	0.819000	1.461227e-52	-8.615850e-47
Msa0015390	Msa0145190	0.835047	2.106588e-56	-8.615850e-47
Msa0020410	Msa0145190	0.846544	2.032503e-59	-8.615850e-47
Msa0026910	Msa0145190	0.813550	2.418934e-51	-8.615850e-47
Msa0037880	Msa0145190	0.811295	7.519949e-51	-8.615850e-47
Msa0050380	Msa0145190	0.803274	3.770431e-49	-8.615850e-47
Msa0055740	Msa0145190	0.807470	4.975131e-50	-8.615850e-47
Msa0064110	Msa0145190	0.805451	1.326330e-49	-8.615850e-47
Msa0117710	Msa0145190	0.849551	3.006902e-60	-8.615850e-47
Msa0117770	Msa0145190	0.805334	1.403753e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145190	MtrunA17_Chr1g0153381	99.200	125	1	0	1	125	1	125	6.34e-88	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145190	AT5G42890.1	79.508	122	25	0	4	125	2	123	1.22e-68	202

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Find 45 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCATGAAAGCAATCTG+TGG	0.609703	1_4:-4872514	None:intergenic
AAGAAAGGAGAAGTTACCAA+AGG	0.658788	1_4:+4871586	Msa0145190:CDS
AAGTCTATACTTGTGAATGG+TGG	0.536430	1_4:+4873027	Msa0145190:three_prime_UTR
AATATAGTTATGGATAATGA+AGG	0.544077	1_4:+4872840	Msa0145190:three_prime_UTR
ACAAGTATAGACTTAAATAT+AGG	0.446049	1_4:-4873018	None:intergenic
ACGTTAGATCATCATTCCTA+AGG	0.532509	1_4:+4872798	Msa0145190:three_prime_UTR
ACTTTGTTAAGGTTGCATTA+GGG	0.521418	1_4:+4872482	Msa0145190:CDS
AGACATCTCTGCTCACATCT+TGG	0.471053	1_4:-4872711	None:intergenic
AGGGGTGCAATGAAGATTAA+GGG	0.479063	1_4:+4872638	Msa0145190:intron
AGTATTATTATAAAAGACAT+TGG	0.528347	1_4:-4872888	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAGAAGAAAAAGGACCTT+AGG	-	chr1_4:4871453-4871472	None:intergenic	30.0%
AATTGTAGTTACTGATGCAT+TGG	+	chr1_4:4871799-4871818	Msa0145190:intron	30.0%
TGAATAAAGAGGTTGAAATC+TGG	+	chr1_4:4872007-4872026	Msa0145190:intron	30.0%
TAGATGCTTTCGATCTATTT+AGG	+	chr1_4:4872108-4872127	Msa0145190:intron	30.0%
TAGGTTATAGATTGTTGTCT+AGG	+	chr1_4:4872127-4872146	Msa0145190:intron	30.0%
TACAGATGAAGACTTTGTTA+AGG	+	chr1_4:4872471-4872490	Msa0145190:CDS	30.0%
ACTTTGTTAAGGTTGCATTA+GGG	+	chr1_4:4872482-4872501	Msa0145190:CDS	30.0%
AATAGATACAAGGAAGTGAA+TGG	-	chr1_4:4872600-4872619	None:intergenic	30.0%
TAACTATAGATATACTCCTC+GGG	-	chr1_4:4872775-4872794	None:intergenic	30.0%
GGTTCATGAGAATATAGTTA+TGG	+	chr1_4:4872830-4872849	Msa0145190:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	4871197	4873108	4871197	ID=Msa0145190;Name=Msa0145190
chr1_4	mRNA	4871197	4873108	4871197	ID=Msa0145190-mRNA-1;Parent=Msa0145190;Name=Msa0145190-mRNA-1;_AED=0.04;_eAED=0.04;_QI=127\|1\|1\|1\|1\|1\|4\|387\|125
chr1_4	exon	4871197	4871455	4871197	ID=Msa0145190-mRNA-1:exon:2017;Parent=Msa0145190-mRNA-1
chr1_4	exon	4871547	4871607	4871547	ID=Msa0145190-mRNA-1:exon:2018;Parent=Msa0145190-mRNA-1
chr1_4	exon	4872431	4872533	4872431	ID=Msa0145190-mRNA-1:exon:2019;Parent=Msa0145190-mRNA-1
chr1_4	exon	4872640	4873108	4872640	ID=Msa0145190-mRNA-1:exon:2020;Parent=Msa0145190-mRNA-1
chr1_4	five_prime_UTR	4871197	4871323	4871197	ID=Msa0145190-mRNA-1:five_prime_utr;Parent=Msa0145190-mRNA-1
chr1_4	CDS	4871324	4871455	4871324	ID=Msa0145190-mRNA-1:cds;Parent=Msa0145190-mRNA-1
chr1_4	CDS	4871547	4871607	4871547	ID=Msa0145190-mRNA-1:cds;Parent=Msa0145190-mRNA-1
chr1_4	CDS	4872431	4872533	4872431	ID=Msa0145190-mRNA-1:cds;Parent=Msa0145190-mRNA-1
chr1_4	CDS	4872640	4872721	4872640	ID=Msa0145190-mRNA-1:cds;Parent=Msa0145190-mRNA-1
chr1_4	three_prime_UTR	4872722	4873108	4872722	ID=Msa0145190-mRNA-1:three_prime_utr;Parent=Msa0145190-mRNA-1

Gene Sequence	>Msa0145190 ATGGCTGATTCATCATCGAATCTGAAATCAGAAGCGATAATCGACTTAATGAAACAACACTTTTCCACCGACGCTGGCAAAAAACTCACCGAAAAAATTGGTCTCGTTTATCAGTTTCAAATTGCTCCTAAGAAAATTGGAATCAATGAAGTTACATATACCGTTGATCTCAAGAAAGGAGAAGTTACCAAAGGGGCATATGAAGGTGGGAAGCCAGATGCAACTTTCTCATTTACAGATGAAGACTTTGTTAAGGTTGCATTAGGGAAGATGAATCCACAGATTGCTTTCATGAGGGGTGCAATGAAGATTAAGGGAAGTTTGAGTGCTGCTCAGAAATTTACTCCGGATATCTTCCCAAAGCCTTCCAAGATGTGA
Protein sequence	>Msa0145190 MADSSSNLKSEAIIDLMKQHFSTDAGKKLTEKIGLVYQFQIAPKKIGINEVTYTVDLKKGEVTKGAYEGGKPDATFSFTDEDFVKVALGKMNPQIAFMRGAMKIKGSLSAAQKFTPDIFPKPSKM*