Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724840 | KEH27917.1 | 95.302 | 298 | 14 | 0 | 1 | 298 | 1 | 298 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724840 | sp|Q8W4Y5|ASCL_SOLLC | 70.470 | 298 | 86 | 1 | 8 | 305 | 7 | 302 | 2.33e-158 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724840 | A0A072UE62 | 95.302 | 298 | 14 | 0 | 1 | 298 | 1 | 298 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0086650 | Msa0724840 | 0.801460 | 8.909053e-49 | -8.615850e-47 |
| Msa0696450 | Msa0724840 | 0.803619 | 3.196796e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724840 | MtrunA17_Chr5g0421391 | 95.286 | 297 | 14 | 0 | 1 | 297 | 1 | 297 | 0.0 | 576 |
| Msa0724840 | MtrunA17_Chr5g0421381 | 84.512 | 297 | 46 | 0 | 1 | 297 | 1 | 297 | 6.48e-179 | 496 |
| Msa0724840 | MtrunA17_Chr8g0368531 | 72.459 | 305 | 84 | 0 | 1 | 305 | 1 | 305 | 5.50e-170 | 473 |
| Msa0724840 | MtrunA17_Chr4g0044861 | 41.608 | 286 | 158 | 4 | 18 | 303 | 16 | 292 | 1.46e-70 | 220 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724840 | AT1G13580.2 | 67.532 | 308 | 100 | 0 | 1 | 308 | 1 | 308 | 2.56e-155 | 437 |
| Msa0724840 | AT1G13580.3 | 67.532 | 308 | 100 | 0 | 1 | 308 | 1 | 308 | 2.56e-155 | 437 |
| Msa0724840 | AT3G25540.1 | 60.772 | 311 | 118 | 2 | 1 | 308 | 1 | 310 | 4.11e-142 | 403 |
| Msa0724840 | AT3G25540.3 | 60.772 | 311 | 118 | 2 | 1 | 308 | 1 | 310 | 4.11e-142 | 403 |
| Msa0724840 | AT1G26200.1 | 57.595 | 316 | 122 | 5 | 1 | 308 | 1 | 312 | 1.22e-123 | 357 |
| Msa0724840 | AT1G26200.3 | 54.740 | 327 | 125 | 5 | 1 | 308 | 1 | 323 | 1.10e-120 | 349 |
| Msa0724840 | AT1G13580.1 | 67.647 | 238 | 77 | 0 | 1 | 238 | 1 | 238 | 4.63e-119 | 342 |
| Msa0724840 | AT3G25540.2 | 61.826 | 241 | 89 | 1 | 1 | 238 | 1 | 241 | 1.11e-112 | 326 |
| Msa0724840 | AT1G26200.2 | 59.244 | 238 | 93 | 2 | 1 | 238 | 1 | 234 | 8.22e-98 | 288 |
| Msa0724840 | AT3G19260.1 | 43.836 | 292 | 155 | 4 | 14 | 305 | 14 | 296 | 2.09e-76 | 236 |
Find 55 sgRNAs with CRISPR-Local
Find 419 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATACTTGCTTTAATATTC+TGG | 0.136312 | 5_1:+23949348 | Msa0724840:CDS |
| AAAGAAGATTAGGAAATTTA+AGG | 0.149891 | 5_1:+23948991 | Msa0724840:CDS |
| TGATGCTACTGATGTGTTTC+TGG | 0.182167 | 5_1:+23951528 | Msa0724840:CDS |
| TGTTTATATACACTAAATTT+TGG | 0.195091 | 5_1:-23954000 | None:intergenic |
| TGCTTGTTCTTAATATTTAT+TGG | 0.221668 | 5_1:+23953411 | Msa0724840:CDS |
| GCATCATTTACTACCCATTC+TGG | 0.232581 | 5_1:+23951638 | Msa0724840:CDS |
| CCAGAATATTAAAGCAAGTA+TGG | 0.250823 | 5_1:-23949348 | None:intergenic |
| AGTGATTGGCACCTTGAAAT+TGG | 0.287417 | 5_1:+23953328 | Msa0724840:CDS |
| TGATTCTGCACCGCTGTATA+TGG | 0.289604 | 5_1:-23951566 | None:intergenic |
| AATGAGCATGAAAACAAAAT+TGG | 0.302168 | 5_1:+23953878 | Msa0724840:exon |
| ACACTCAGGTTTGTTCGAAT+TGG | 0.325304 | 5_1:+23951484 | Msa0724840:intron |
| TTGGTGGCAAACAATGGATT+TGG | 0.364447 | 5_1:+23947648 | None:intergenic |
| TCTCGACAGCTTCATCTTTG+AGG | 0.368082 | 5_1:+23947777 | Msa0724840:CDS |
| CATACTTGCTTTAATATTCT+GGG | 0.380439 | 5_1:+23949349 | Msa0724840:CDS |
| GGGAAGAAGAGAGCGAAGAT+AGG | 0.395595 | 5_1:-23947739 | None:intergenic |
| GTTGGTCAAATCTGCGCAAA+AGG | 0.396663 | 5_1:+23953458 | Msa0724840:CDS |
| CTGATGCTTCGGATGCTTGT+TGG | 0.406436 | 5_1:+23953440 | Msa0724840:CDS |
| CAGATGCTTGTCCAATTTCA+AGG | 0.422664 | 5_1:-23953339 | None:intergenic |
| TCGGGCCAGGGAATCAGATA+TGG | 0.427253 | 5_1:+23949113 | Msa0724840:CDS |
| CTTGAAATTGGACAAGCATC+TGG | 0.432557 | 5_1:+23953340 | Msa0724840:CDS |
| ATGATACGAGAAAGAAGATT+AGG | 0.436397 | 5_1:+23948981 | Msa0724840:CDS |
| CATCATTTACTACCCATTCT+GGG | 0.450526 | 5_1:+23951639 | Msa0724840:CDS |
| ATTGGTGGGTGCTGATGCTT+CGG | 0.460019 | 5_1:+23953429 | Msa0724840:CDS |
| AACAACTGACTTCCCTTGAC+TGG | 0.468014 | 5_1:+23947674 | Msa0724840:CDS |
| GTTAGTGAAGATATTAGATC+TGG | 0.474457 | 5_1:+23953485 | Msa0724840:CDS |
| ATGCAGAAATCATGAAAGAC+AGG | 0.478127 | 5_1:-23947712 | None:intergenic |
| TCTGGGTTCTTCAAAGTACA+AGG | 0.496115 | 5_1:+23951656 | Msa0724840:CDS |
| TACTTTGAAGAACCCAGAAT+GGG | 0.500902 | 5_1:-23951651 | None:intergenic |
| ACTGATGTGTTTCTGGAGAT+AGG | 0.501928 | 5_1:+23951535 | Msa0724840:CDS |
| TTGTTCTTAATATTTATTGG+TGG | 0.510641 | 5_1:+23953414 | Msa0724840:CDS |
| TCTGGCCATATCTGATTCCC+TGG | 0.512470 | 5_1:-23949118 | None:intergenic |
| AGGATTCTTGTTGCCAGTCA+AGG | 0.513753 | 5_1:-23947687 | None:intergenic |
| TGTTCTTAATATTTATTGGT+GGG | 0.517092 | 5_1:+23953415 | Msa0724840:CDS |
| GGGCTGTATATGTATGGTGC+TGG | 0.521303 | 5_1:+23949311 | Msa0724840:CDS |
| GTAGTAAATGATGCGCAATA+TGG | 0.527608 | 5_1:-23951629 | None:intergenic |
| GTACTTTGAAGAACCCAGAA+TGG | 0.544458 | 5_1:-23951652 | None:intergenic |
| TCGCCGTTGGTGGCAAACAA+TGG | 0.551561 | 5_1:+23947642 | None:intergenic |
| TTGGTCAAATCTGCGCAAAA+GGG | 0.554148 | 5_1:+23953459 | Msa0724840:CDS |
| TTGAAGGGGCTGTATATGTA+TGG | 0.554283 | 5_1:+23949305 | Msa0724840:CDS |
| CTACAATATATGACATGCCT+AGG | 0.555475 | 5_1:-23953945 | None:intergenic |
| GGATTCTTGTTGCCAGTCAA+GGG | 0.558590 | 5_1:-23947686 | None:intergenic |
| ACACATCAGTAGCATCATGA+AGG | 0.561502 | 5_1:-23951522 | None:intergenic |
| CTGCAACATATGATGAACCT+TGG | 0.572580 | 5_1:+23949065 | Msa0724840:CDS |
| TCGAGAAGAAAACGAAGGGA+AGG | 0.581153 | 5_1:-23947760 | None:intergenic |
| CGAGAAGAAAACGAAGGGAA+GGG | 0.601020 | 5_1:-23947759 | None:intergenic |
| GGAAATTTAAGGAATCAGCA+TGG | 0.606420 | 5_1:+23949002 | Msa0724840:CDS |
| ATTTGCAGAAAGTGGCCAGA+CGG | 0.612078 | 5_1:+23948915 | Msa0724840:intron |
| AGAGACAACATGATGTGTCA+TGG | 0.614305 | 5_1:-23949399 | None:intergenic |
| GAAATTGGACAAGCATCTGG+TGG | 0.641961 | 5_1:+23953343 | Msa0724840:CDS |
| CACATCAGTAGCATCATGAA+GGG | 0.644651 | 5_1:-23951521 | None:intergenic |
| GAAATCATGAAAGACAGGGT+AGG | 0.648107 | 5_1:-23947707 | None:intergenic |
| GCTGTCGAGAAGAAAACGAA+GGG | 0.656132 | 5_1:-23947764 | None:intergenic |
| TGCAGAAATCATGAAAGACA+GGG | 0.675532 | 5_1:-23947711 | None:intergenic |
| GGCAAAATGTCCATATACAG+CGG | 0.676062 | 5_1:+23951556 | Msa0724840:CDS |
| AGCTGTCGAGAAGAAAACGA+AGG | 0.681968 | 5_1:-23947765 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATTTTCTATAAATATT+TGG | + | chr5_1:23948507-23948526 | Msa0724840:intron | 10.0% |
| !!! | ATGATTTTCTATAAATATTT+GGG | + | chr5_1:23948508-23948527 | Msa0724840:intron | 10.0% |
| !! | ATTAAATTAAATTTGAACAA+TGG | - | chr5_1:23953269-23953288 | None:intergenic | 10.0% |
| !!! | TTATAATGCTTTGTTTATAA+GGG | + | chr5_1:23948801-23948820 | Msa0724840:intron | 15.0% |
| !!! | TTACTGATACAAAATATTTT+TGG | + | chr5_1:23949089-23949108 | Msa0724840:CDS | 15.0% |
| !!! | TACTGATACAAAATATTTTT+GGG | + | chr5_1:23949090-23949109 | Msa0724840:CDS | 15.0% |
| !! | TTCAATCTGAAAATTAAAAA+TGG | - | chr5_1:23949284-23949303 | None:intergenic | 15.0% |
| !! | ATATTAAAACGAAAAAAAGA+AGG | + | chr5_1:23949580-23949599 | Msa0724840:intron | 15.0% |
| !! | TATTAAAACGAAAAAAAGAA+GGG | + | chr5_1:23949581-23949600 | Msa0724840:intron | 15.0% |
| !!! | AATTTTGCTTTAAAATAATC+TGG | + | chr5_1:23950248-23950267 | Msa0724840:intron | 15.0% |
| !!! | ATTTTGCTTTAAAATAATCT+GGG | + | chr5_1:23950249-23950268 | Msa0724840:intron | 15.0% |
| !! | AAGGAAAAAAAATGTAAATT+GGG | - | chr5_1:23951699-23951718 | None:intergenic | 15.0% |
| !! | AAAGGAAAAAAAATGTAAAT+TGG | - | chr5_1:23951700-23951719 | None:intergenic | 15.0% |
| !!! | TTCAGTTTTGAATATAATTT+TGG | - | chr5_1:23951913-23951932 | None:intergenic | 15.0% |
| !! | TCTTAATGATTTACTATTAT+AGG | + | chr5_1:23952275-23952294 | Msa0724840:intron | 15.0% |
| !! | TATAAGCTTATTAGTATTTA+TGG | + | chr5_1:23952482-23952501 | Msa0724840:intron | 15.0% |
| !! | GAAGTAAAAAATATTACATT+TGG | + | chr5_1:23952716-23952735 | Msa0724840:intron | 15.0% |
| !! | CATATAAAAGAAAATGTTAA+GGG | - | chr5_1:23953828-23953847 | None:intergenic | 15.0% |
| !!! | TGTTTATATACACTAAATTT+TGG | - | chr5_1:23954003-23954022 | None:intergenic | 15.0% |
| !! | AAACTGTTTATAAGCTATAT+TGG | - | chr5_1:23947874-23947893 | None:intergenic | 20.0% |
| !!! | TCGAAATTTTTTAATATAGC+AGG | + | chr5_1:23948055-23948074 | Msa0724840:intron | 20.0% |
| !! | AAAGGAAAATAATAATGTAG+TGG | + | chr5_1:23948138-23948157 | Msa0724840:intron | 20.0% |
| !!! | AAAATAATAATGTAGTGGAA+AGG | + | chr5_1:23948143-23948162 | Msa0724840:intron | 20.0% |
| !!! | AAATAATAATGTAGTGGAAA+GGG | + | chr5_1:23948144-23948163 | Msa0724840:intron | 20.0% |
| !! | TGATATGATTATACAGAAAA+AGG | - | chr5_1:23948238-23948257 | None:intergenic | 20.0% |
| !! | GATGCATAAATAATTAAACA+AGG | + | chr5_1:23948394-23948413 | Msa0724840:intron | 20.0% |
| !!! | CATTTGTGAGAATATTTTAA+AGG | + | chr5_1:23948719-23948738 | Msa0724840:intron | 20.0% |
| !!! | ATATTTTAAAGGTTACATTG+AGG | + | chr5_1:23948730-23948749 | Msa0724840:intron | 20.0% |
| !!! | CTTATAATGCTTTGTTTATA+AGG | + | chr5_1:23948800-23948819 | Msa0724840:intron | 20.0% |
| !! | AAAGAAGATTAGGAAATTTA+AGG | + | chr5_1:23948991-23949010 | Msa0724840:CDS | 20.0% |
| !!! | AATTTTCAGATTGAAATTGA+AGG | + | chr5_1:23949289-23949308 | Msa0724840:intron | 20.0% |
| !!! | ATTTTCAGATTGAAATTGAA+GGG | + | chr5_1:23949290-23949309 | Msa0724840:intron | 20.0% |
| !! | AAATAAAATAAAGTTAGTGC+AGG | - | chr5_1:23949533-23949552 | None:intergenic | 20.0% |
| !!! | TTTAGGTTTGTTCTTTAATT+GGG | - | chr5_1:23949637-23949656 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTGTTCTTTAAT+TGG | - | chr5_1:23949638-23949657 | None:intergenic | 20.0% |
| !! | TAAAGAACAAACCTAAAATT+AGG | + | chr5_1:23949640-23949659 | Msa0724840:intron | 20.0% |
| !!! | TTCATACATATTTTTAGAGT+AGG | - | chr5_1:23949781-23949800 | None:intergenic | 20.0% |
| !!! | TTCATACATATTTTAAGAGT+AGG | - | chr5_1:23949883-23949902 | None:intergenic | 20.0% |
| !!! | GAATTTTCAGTTTGAATTAT+AGG | + | chr5_1:23950188-23950207 | Msa0724840:intron | 20.0% |
| !!! | AACTTTATCTTATCTAGAAT+AGG | + | chr5_1:23950869-23950888 | Msa0724840:intron | 20.0% |
| !! | AAAAAAATGTAAATTGGGAA+TGG | - | chr5_1:23951694-23951713 | None:intergenic | 20.0% |
| !!! | ACAGGTTTTTTATTCATAAA+CGG | - | chr5_1:23952013-23952032 | None:intergenic | 20.0% |
| !! | AATTGAACTTCCAATTTAAA+GGG | - | chr5_1:23952124-23952143 | None:intergenic | 20.0% |
| !! | AAATTGAACTTCCAATTTAA+AGG | - | chr5_1:23952125-23952144 | None:intergenic | 20.0% |
| !! | TTACCATTGCATAAAAATTA+AGG | - | chr5_1:23952155-23952174 | None:intergenic | 20.0% |
| !! | AAAAGAAAAAAAAAAGAGCA+AGG | - | chr5_1:23952191-23952210 | None:intergenic | 20.0% |
| !! | TTTATATAATCACTTAATGC+AGG | + | chr5_1:23952311-23952330 | Msa0724840:intron | 20.0% |
| !! | AATTTGACGTAGTAAATTTA+TGG | + | chr5_1:23952436-23952455 | Msa0724840:intron | 20.0% |
| !!! | TATAAGAACTTTTTTGTTAG+TGG | - | chr5_1:23952466-23952485 | None:intergenic | 20.0% |
| !!! | TTAGGTTTCCAATTTTTTAT+TGG | + | chr5_1:23953106-23953125 | Msa0724840:intron | 20.0% |
| !!! | TAGGTTTCCAATTTTTTATT+GGG | + | chr5_1:23953107-23953126 | Msa0724840:intron | 20.0% |
| !! | TTTCAAACCCAATAAAAAAT+TGG | - | chr5_1:23953117-23953136 | None:intergenic | 20.0% |
| !! | TGCTTGTTCTTAATATTTAT+TGG | + | chr5_1:23953411-23953430 | Msa0724840:CDS | 20.0% |
| !! | TTGTTCTTAATATTTATTGG+TGG | + | chr5_1:23953414-23953433 | Msa0724840:CDS | 20.0% |
| !! | TGTTCTTAATATTTATTGGT+GGG | + | chr5_1:23953415-23953434 | Msa0724840:CDS | 20.0% |
| !! | CTAAATATCCATTACATATA+TGG | + | chr5_1:23953512-23953531 | Msa0724840:intron | 20.0% |
| !! | GACTATATAACTACTATATA+TGG | + | chr5_1:23953722-23953741 | Msa0724840:intron | 20.0% |
| !! | ATATAACTACTATATATGGA+CGG | + | chr5_1:23953726-23953745 | Msa0724840:intron | 20.0% |
| !!! | CTGTTTAAAAAAGTTTTAAC+TGG | + | chr5_1:23953781-23953800 | Msa0724840:intron | 20.0% |
| !! | GCATATAAAAGAAAATGTTA+AGG | - | chr5_1:23953829-23953848 | None:intergenic | 20.0% |
| !!! | TTTCAATAAGTTCTAGAAGA+AGG | - | chr5_1:23947824-23947843 | None:intergenic | 25.0% |
| !!! | CACTTCTATTTTTACACATA+AGG | - | chr5_1:23947910-23947929 | None:intergenic | 25.0% |
| !! | AAAAGATGTAAGTGAGATTT+TGG | + | chr5_1:23948105-23948124 | Msa0724840:intron | 25.0% |
| ! | TCCAAATAAATTAACCCATT+TGG | + | chr5_1:23948266-23948285 | Msa0724840:intron | 25.0% |
| ! | ATGTTAGGATGAACAATAAT+TGG | + | chr5_1:23948336-23948355 | Msa0724840:intron | 25.0% |
| ! | TGTTAGGATGAACAATAATT+GGG | + | chr5_1:23948337-23948356 | Msa0724840:intron | 25.0% |
| ! | AAGGAGATATCTTTGTTAAA+TGG | + | chr5_1:23948413-23948432 | Msa0724840:intron | 25.0% |
| ! | ATGCATCATTATTCAATTCA+CGG | - | chr5_1:23948452-23948471 | None:intergenic | 25.0% |
| ! | TAATGATGCATAGATAAAGT+TGG | + | chr5_1:23948461-23948480 | Msa0724840:intron | 25.0% |
| ! | ATATCAACACAAATTGCAAA+TGG | - | chr5_1:23948861-23948880 | None:intergenic | 25.0% |
| !! | TATTTTGTATCAGTAAACCA+AGG | - | chr5_1:23949085-23949104 | None:intergenic | 25.0% |
| !!! | GATACAAAATATTTTTGGGT+CGG | + | chr5_1:23949094-23949113 | Msa0724840:CDS | 25.0% |
| !!! | ATACAAAATATTTTTGGGTC+GGG | + | chr5_1:23949095-23949114 | Msa0724840:CDS | 25.0% |
| !! | TCTTACTTAATCTTTTGATC+TGG | - | chr5_1:23949139-23949158 | None:intergenic | 25.0% |
| ! | ACTGCTGAATTAATAAACTT+AGG | - | chr5_1:23949259-23949278 | None:intergenic | 25.0% |
| !! | TTTTCAGATTGAAATTGAAG+GGG | + | chr5_1:23949291-23949310 | Msa0724840:intron | 25.0% |
| ! | CATACTTGCTTTAATATTCT+GGG | + | chr5_1:23949349-23949368 | Msa0724840:CDS | 25.0% |
| !! | TTGTGTTATCGTACATTTTT+AGG | + | chr5_1:23949432-23949451 | Msa0724840:CDS | 25.0% |
| !! | TTCTACTTTAGAGATTTGTT+AGG | - | chr5_1:23949670-23949689 | None:intergenic | 25.0% |
| !!! | AACAAATCTCTAAAGTAGAA+AGG | + | chr5_1:23949670-23949689 | Msa0724840:intron | 25.0% |
| !!! | GTTTTTTGACAAAGTTACAA+AGG | - | chr5_1:23950222-23950241 | None:intergenic | 25.0% |
| ! | TAACTTTGTCAAAAAACTGT+GGG | + | chr5_1:23950225-23950244 | Msa0724840:intron | 25.0% |
| ! | AAGAAAACATGATGAACAAT+TGG | + | chr5_1:23950479-23950498 | Msa0724840:intron | 25.0% |
| !!! | TGGAATTATTTTACCAACAA+AGG | - | chr5_1:23950551-23950570 | None:intergenic | 25.0% |
| ! | TGGTAAAATAATTCCAACAT+AGG | + | chr5_1:23950555-23950574 | Msa0724840:intron | 25.0% |
| !! | TTTTCAAACCACTTAATGAA+GGG | - | chr5_1:23950631-23950650 | None:intergenic | 25.0% |
| ! | ATAAAAATATTTGTGTGGAG+TGG | - | chr5_1:23950698-23950717 | None:intergenic | 25.0% |
| ! | CTTGCATAAAAATATTTGTG+TGG | - | chr5_1:23950703-23950722 | None:intergenic | 25.0% |
| ! | TTTCCTTCAGAATTTATACT+TGG | - | chr5_1:23950754-23950773 | None:intergenic | 25.0% |
| ! | GAACACCTAGATATATAAAA+GGG | + | chr5_1:23950920-23950939 | Msa0724840:intron | 25.0% |
| ! | AACACCTAGATATATAAAAG+GGG | + | chr5_1:23950921-23950940 | Msa0724840:intron | 25.0% |
| !! | TTTTTCTGCAGTTTATGAAT+TGG | + | chr5_1:23951007-23951026 | Msa0724840:intron | 25.0% |
| !! | TCTTTGTTTCAGAGAAATTT+GGG | - | chr5_1:23951387-23951406 | None:intergenic | 25.0% |
| !! | ATCTTTGTTTCAGAGAAATT+TGG | - | chr5_1:23951388-23951407 | None:intergenic | 25.0% |
| ! | ATTATTTGTTCAATACACTC+AGG | + | chr5_1:23951470-23951489 | Msa0724840:intron | 25.0% |
| !! | TTATTCTTTTTGTCTTGTCT+TGG | + | chr5_1:23951605-23951624 | Msa0724840:CDS | 25.0% |
| ! | TTCAGAATATGAATTTCAAC+AGG | - | chr5_1:23951728-23951747 | None:intergenic | 25.0% |
| ! | TACCTTCTTTATCATCTAAA+GGG | - | chr5_1:23951983-23952002 | None:intergenic | 25.0% |
| ! | TTACCTTCTTTATCATCTAA+AGG | - | chr5_1:23951984-23952003 | None:intergenic | 25.0% |
| !! | TCATACTTTTCCCTTTAAAT+TGG | + | chr5_1:23952111-23952130 | Msa0724840:intron | 25.0% |
| !! | AGTCCTTAATTTTTATGCAA+TGG | + | chr5_1:23952149-23952168 | Msa0724840:intron | 25.0% |
| ! | TTTCTTAAGCAGAAAAAGTT+TGG | + | chr5_1:23952337-23952356 | Msa0724840:intron | 25.0% |
| ! | AATTTACTACGTCAAATTAC+AGG | - | chr5_1:23952434-23952453 | None:intergenic | 25.0% |
| ! | AATAACAATTTGTACAAGTG+TGG | - | chr5_1:23952560-23952579 | None:intergenic | 25.0% |
| ! | AAATATTACATTTGGCAGTT+AGG | + | chr5_1:23952724-23952743 | Msa0724840:intron | 25.0% |
| ! | TGGAAATTATTATATCCTGT+AGG | + | chr5_1:23952771-23952790 | Msa0724840:intron | 25.0% |
| ! | ATTATTATATCCTGTAGGAT+AGG | + | chr5_1:23952776-23952795 | Msa0724840:intron | 25.0% |
| !!! | AATATTTTTGACAGCATTCA+TGG | - | chr5_1:23952969-23952988 | None:intergenic | 25.0% |
| !!! | AAATCAGCCTTTACTTTTAA+AGG | - | chr5_1:23953065-23953084 | None:intergenic | 25.0% |
| ! | GAAGAAAACAATTAAACAGA+AGG | - | chr5_1:23953292-23953311 | None:intergenic | 25.0% |
| ! | TTAGAAAGCCATATATGTAA+TGG | - | chr5_1:23953523-23953542 | None:intergenic | 25.0% |
| !! | TTAATTCCATTTAGAGTTTG+AGG | - | chr5_1:23953590-23953609 | None:intergenic | 25.0% |
| ! | ATGGAATTAAGCAAACAATT+TGG | + | chr5_1:23953600-23953619 | Msa0724840:intron | 25.0% |
| ! | AATGAGCATGAAAACAAAAT+TGG | + | chr5_1:23953878-23953897 | Msa0724840:exon | 25.0% |
| !!! | TATTGTCTCACTTTTTGAAA+TGG | + | chr5_1:23953902-23953921 | Msa0724840:three_prime_UTR | 25.0% |
| !! | ATAAGTTCTAGAAGAAGGTA+AGG | - | chr5_1:23947819-23947838 | None:intergenic | 30.0% |
| AATAAGTTGTTTATCCAAGC+AGG | + | chr5_1:23947948-23947967 | Msa0724840:intron | 30.0% | |
| !!! | ACATCTTTTTTCTAACCTAC+CGG | - | chr5_1:23948094-23948113 | None:intergenic | 30.0% |
| GAAAGGGTCGAAATTAATAA+AGG | + | chr5_1:23948160-23948179 | Msa0724840:intron | 30.0% | |
| ATGAACACCAACAATGAATT+TGG | + | chr5_1:23948196-23948215 | Msa0724840:intron | 30.0% | |
| !! | GCCAAATGGGTTAATTTATT+TGG | - | chr5_1:23948270-23948289 | None:intergenic | 30.0% |
| !! | GCTTGGTTCTCATATTTTAT+TGG | + | chr5_1:23948301-23948320 | Msa0724840:intron | 30.0% |
| ! | GGTTCTCATATTTTATTGGA+TGG | + | chr5_1:23948305-23948324 | Msa0724840:intron | 30.0% |
| AATTGGGAATTCGAGTATTT+AGG | + | chr5_1:23948353-23948372 | Msa0724840:intron | 30.0% | |
| ATTGGGAATTCGAGTATTTA+GGG | + | chr5_1:23948354-23948373 | Msa0724840:intron | 30.0% | |
| GAAGGAAAATGATTGAATAG+AGG | - | chr5_1:23948538-23948557 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTCTTCTTGTTAC+TGG | + | chr5_1:23948548-23948567 | Msa0724840:intron | 30.0% |
| TATATCCAGTAACAAGAAGA+AGG | - | chr5_1:23948556-23948575 | None:intergenic | 30.0% | |
| ! | GTTTTGTACATAGTTCAAAC+AGG | + | chr5_1:23948615-23948634 | Msa0724840:intron | 30.0% |
| ACAAATGTACCATTTGTTTG+GGG | - | chr5_1:23948706-23948725 | None:intergenic | 30.0% | |
| CACAAATGTACCATTTGTTT+GGG | - | chr5_1:23948707-23948726 | None:intergenic | 30.0% | |
| TCACAAATGTACCATTTGTT+TGG | - | chr5_1:23948708-23948727 | None:intergenic | 30.0% | |
| ATGTCTGTGTCTATTCTATA+TGG | + | chr5_1:23948770-23948789 | Msa0724840:intron | 30.0% | |
| TGTCTGTGTCTATTCTATAT+GGG | + | chr5_1:23948771-23948790 | Msa0724840:intron | 30.0% | |
| !! | TAATGCTTTGTTTATAAGGG+TGG | + | chr5_1:23948804-23948823 | Msa0724840:intron | 30.0% |
| AAATCTCTCAGCATCTTATA+AGG | - | chr5_1:23948835-23948854 | None:intergenic | 30.0% | |
| TGAATGAAATTTGCAGAAAG+TGG | + | chr5_1:23948907-23948926 | Msa0724840:intron | 30.0% | |
| ATGATACGAGAAAGAAGATT+AGG | + | chr5_1:23948981-23949000 | Msa0724840:CDS | 30.0% | |
| !! | GAAGTGCGTTTATTTTCTAT+CGG | + | chr5_1:23949024-23949043 | Msa0724840:CDS | 30.0% |
| CCAGAATATTAAAGCAAGTA+TGG | - | chr5_1:23949351-23949370 | None:intergenic | 30.0% | |
| CCATACTTGCTTTAATATTC+TGG | + | chr5_1:23949348-23949367 | Msa0724840:CDS | 30.0% | |
| TTCTTAATGCCTTTACCTAA+AGG | + | chr5_1:23949467-23949486 | Msa0724840:intron | 30.0% | |
| AAAAAGAAGGGTTACAAGAT+TGG | + | chr5_1:23949593-23949612 | Msa0724840:intron | 30.0% | |
| AAAAGAAGGGTTACAAGATT+GGG | + | chr5_1:23949594-23949613 | Msa0724840:intron | 30.0% | |
| ! | TGTTAGGTTTGCCTAATTTT+AGG | - | chr5_1:23949654-23949673 | None:intergenic | 30.0% |
| TGGCAATTTGACTACTAAAT+TGG | - | chr5_1:23950152-23950171 | None:intergenic | 30.0% | |
| AAACTGAAAATTCTCTCAAC+TGG | - | chr5_1:23950181-23950200 | None:intergenic | 30.0% | |
| GTAACTTTGTCAAAAAACTG+TGG | + | chr5_1:23950224-23950243 | Msa0724840:intron | 30.0% | |
| ATAGCTGATTATACCTTAGA+TGG | - | chr5_1:23950287-23950306 | None:intergenic | 30.0% | |
| TAGCATTAGCATAGATTGTA+GGG | + | chr5_1:23950427-23950446 | Msa0724840:intron | 30.0% | |
| ! | CATCATGTTTTCTTTCCATT+TGG | - | chr5_1:23950473-23950492 | None:intergenic | 30.0% |
| CAATTGGATTATTGTTCCTT+AGG | + | chr5_1:23950495-23950514 | Msa0724840:intron | 30.0% | |
| ! | TTTTACCAACAAAGGTCAAT+GGG | - | chr5_1:23950543-23950562 | None:intergenic | 30.0% |
| ! | ATTTTACCAACAAAGGTCAA+TGG | - | chr5_1:23950544-23950563 | None:intergenic | 30.0% |
| ! | GTTTTCAAACCACTTAATGA+AGG | - | chr5_1:23950632-23950651 | None:intergenic | 30.0% |
| AATCAAGCTATTGAAGGAAT+TGG | - | chr5_1:23950729-23950748 | None:intergenic | 30.0% | |
| AATTCCTTCAATAGCTTGAT+TGG | + | chr5_1:23950728-23950747 | Msa0724840:intron | 30.0% | |
| TAAAGTTGAAACTTGCAACT+TGG | - | chr5_1:23950856-23950875 | None:intergenic | 30.0% | |
| GGAACACCTAGATATATAAA+AGG | + | chr5_1:23950919-23950938 | Msa0724840:intron | 30.0% | |
| !! | ATTCAAGAATCTTTGAGACA+TGG | - | chr5_1:23950960-23950979 | None:intergenic | 30.0% |
| GCTATGAAAAGAGACTAATA+AGG | + | chr5_1:23951047-23951066 | Msa0724840:intron | 30.0% | |
| TTCCACTTTGTTCTTACAAA+GGG | - | chr5_1:23951099-23951118 | None:intergenic | 30.0% | |
| TTTCCACTTTGTTCTTACAA+AGG | - | chr5_1:23951100-23951119 | None:intergenic | 30.0% | |
| TGTAAGAACAAAGTGGAAAT+CGG | + | chr5_1:23951101-23951120 | Msa0724840:intron | 30.0% | |
| CATTCAACAAACAAAGTGTA+GGG | + | chr5_1:23951287-23951306 | Msa0724840:intron | 30.0% | |
| ATTTCGGAATGAAATGTCAT+CGG | + | chr5_1:23951345-23951364 | Msa0724840:intron | 30.0% | |
| TTTGTTTCAGAGAAATTTGG+GGG | - | chr5_1:23951385-23951404 | None:intergenic | 30.0% | |
| ! | CTTTGTTTCAGAGAAATTTG+GGG | - | chr5_1:23951386-23951405 | None:intergenic | 30.0% |
| TTCCCTTTAGATGATAAAGA+AGG | + | chr5_1:23951978-23951997 | Msa0724840:intron | 30.0% | |
| AGCATAGACAAAATATCAAC+AGG | - | chr5_1:23952031-23952050 | None:intergenic | 30.0% | |
| TGTCTATGCTTAACTAATCA+TGG | + | chr5_1:23952041-23952060 | Msa0724840:intron | 30.0% | |
| CAAGCACTTAATTGGTAAAA+TGG | - | chr5_1:23952247-23952266 | None:intergenic | 30.0% | |
| ! | CATTTTACCAATTAAGTGCT+TGG | + | chr5_1:23952245-23952264 | Msa0724840:intron | 30.0% |
| ! | TGATTTTCCAAGCACTTAAT+TGG | - | chr5_1:23952255-23952274 | None:intergenic | 30.0% |
| GTTAGAAGCTAATCTAAACA+GGG | - | chr5_1:23952402-23952421 | None:intergenic | 30.0% | |
| AGTTAGAAGCTAATCTAAAC+AGG | - | chr5_1:23952403-23952422 | None:intergenic | 30.0% | |
| TTGAAGCAGCAAAATATGAA+TGG | - | chr5_1:23952657-23952676 | None:intergenic | 30.0% | |
| TAATAATAACTGACTGCTAC+TGG | - | chr5_1:23952843-23952862 | None:intergenic | 30.0% | |
| GAGAACTCTTTGTTAAGAAT+GGG | + | chr5_1:23952910-23952929 | Msa0724840:intron | 30.0% | |
| ! | TTTCTGGCCTTTAAAAGTAA+AGG | + | chr5_1:23953055-23953074 | Msa0724840:intron | 30.0% |
| TGATATCCAAGTCTGATATT+AGG | + | chr5_1:23953088-23953107 | Msa0724840:intron | 30.0% | |
| AACCAAGTAAAGTTTGTCTT+TGG | - | chr5_1:23953150-23953169 | None:intergenic | 30.0% | |
| AGACAAACTTTACTTGGTTT+AGG | + | chr5_1:23953151-23953170 | Msa0724840:intron | 30.0% | |
| GACAAACTTTACTTGGTTTA+GGG | + | chr5_1:23953152-23953171 | Msa0724840:intron | 30.0% | |
| TGAATCACAGAATAAACTTC+AGG | - | chr5_1:23953222-23953241 | None:intergenic | 30.0% | |
| GTTAGTGAAGATATTAGATC+TGG | + | chr5_1:23953485-23953504 | Msa0724840:CDS | 30.0% | |
| AAGATACCAACTACAAGAAA+TGG | + | chr5_1:23953562-23953581 | Msa0724840:intron | 30.0% | |
| ! | GGGTAATTTTTATGTGAAAG+TGG | + | chr5_1:23953690-23953709 | Msa0724840:intron | 30.0% |
| !!! | TGTGATTTTTTTAGTCGTCA+TGG | - | chr5_1:23953758-23953777 | None:intergenic | 30.0% |
| !!! | TAGATTTTTTACATGCACCT+AGG | + | chr5_1:23953928-23953947 | Msa0724840:three_prime_UTR | 30.0% |
| TGCAGAAATCATGAAAGACA+GGG | - | chr5_1:23947714-23947733 | None:intergenic | 35.0% | |
| ATGCAGAAATCATGAAAGAC+AGG | - | chr5_1:23947715-23947734 | None:intergenic | 35.0% | |
| ! | AAAAATTTCGAGTCAGACAC+TGG | - | chr5_1:23948046-23948065 | None:intergenic | 35.0% |
| AACCTACCGGAATAAAGATT+CGG | - | chr5_1:23948081-23948100 | None:intergenic | 35.0% | |
| !!! | GATTTTGGTTAGAGAGAGAA+AGG | + | chr5_1:23948120-23948139 | Msa0724840:intron | 35.0% |
| AACACCAACAATGAATTTGG+AGG | + | chr5_1:23948199-23948218 | Msa0724840:intron | 35.0% | |
| ACACCAACAATGAATTTGGA+GGG | + | chr5_1:23948200-23948219 | Msa0724840:intron | 35.0% | |
| ATTCCCTCCAAATTCATTGT+TGG | - | chr5_1:23948206-23948225 | None:intergenic | 35.0% | |
| TGGATGGAAGTTGTTATGTT+AGG | + | chr5_1:23948321-23948340 | Msa0724840:intron | 35.0% | |
| CATAGATAAAGTTGGAGTTG+TGG | + | chr5_1:23948469-23948488 | Msa0724840:intron | 35.0% | |
| ! | TTTTCGAAAAATCAACCGTC+TGG | - | chr5_1:23948933-23948952 | None:intergenic | 35.0% |
| !! | AGACGGTTGATTTTTCGAAA+AGG | + | chr5_1:23948932-23948951 | Msa0724840:CDS | 35.0% |
| !! | GACGGTTGATTTTTCGAAAA+GGG | + | chr5_1:23948933-23948952 | Msa0724840:CDS | 35.0% |
| GGAAATTTAAGGAATCAGCA+TGG | + | chr5_1:23949002-23949021 | Msa0724840:CDS | 35.0% | |
| AGGTTGACAATTAAAGTCAC+TGG | - | chr5_1:23949239-23949258 | None:intergenic | 35.0% | |
| CTTAAGTGTCCTTTAGGTAA+AGG | - | chr5_1:23949479-23949498 | None:intergenic | 35.0% | |
| TACCTAAAGGACACTTAAGT+TGG | + | chr5_1:23949480-23949499 | Msa0724840:intron | 35.0% | |
| AACCAACTTAAGTGTCCTTT+AGG | - | chr5_1:23949485-23949504 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGTGAGCACATTA+TGG | + | chr5_1:23949499-23949518 | Msa0724840:intron | 35.0% |
| TAGAAAGGTCTAGTGAAACT+AGG | + | chr5_1:23949685-23949704 | Msa0724840:intron | 35.0% | |
| AAGAGTAGGTAATGTCCATA+TGG | - | chr5_1:23949869-23949888 | None:intergenic | 35.0% | |
| AACCATATGGACATTGCTAA+AGG | + | chr5_1:23949966-23949985 | Msa0724840:intron | 35.0% | |
| TAAAGGCCAATACAACATTC+TGG | + | chr5_1:23949983-23950002 | Msa0724840:intron | 35.0% | |
| AAAGGCCAATACAACATTCT+GGG | + | chr5_1:23949984-23950003 | Msa0724840:intron | 35.0% | |
| TGATTCCCAGAATGTTGTAT+TGG | - | chr5_1:23949992-23950011 | None:intergenic | 35.0% | |
| !! | TGTGGAGATTTTTCTAGCAA+GGG | - | chr5_1:23950039-23950058 | None:intergenic | 35.0% |
| !! | TTGTGGAGATTTTTCTAGCA+AGG | - | chr5_1:23950040-23950059 | None:intergenic | 35.0% |
| TCTCCACAAAACAAAAGTTC+TGG | + | chr5_1:23950051-23950070 | Msa0724840:intron | 35.0% | |
| ! | CACAAAACAAAAGTTCTGGT+GGG | + | chr5_1:23950055-23950074 | Msa0724840:intron | 35.0% |
| ATTCTAGCATCACTTTCAAC+TGG | - | chr5_1:23950111-23950130 | None:intergenic | 35.0% | |
| ATTCTCTCAACTGGAATAGA+TGG | - | chr5_1:23950172-23950191 | None:intergenic | 35.0% | |
| ATTATACCTTAGATGGCAGA+TGG | - | chr5_1:23950280-23950299 | None:intergenic | 35.0% | |
| TATTTCCATCACCTATGTTC+CGG | + | chr5_1:23950403-23950422 | Msa0724840:intron | 35.0% | |
| GTAGCATTAGCATAGATTGT+AGG | + | chr5_1:23950426-23950445 | Msa0724840:intron | 35.0% | |
| ATGCTTAATTCCATGCCAAA+TGG | + | chr5_1:23950455-23950474 | Msa0724840:intron | 35.0% | |
| ! | TGTTTTCTTTCCATTTGGCA+TGG | - | chr5_1:23950468-23950487 | None:intergenic | 35.0% |
| GTCAGCTATAACTATCAATG+AGG | - | chr5_1:23950594-23950613 | None:intergenic | 35.0% | |
| ACAAAATTTCAACTGTGGCT+TGG | - | chr5_1:23950661-23950680 | None:intergenic | 35.0% | |
| ! | AGCCACAGTTGAAATTTTGT+TGG | + | chr5_1:23950661-23950680 | Msa0724840:intron | 35.0% |
| CACCAACAAAATTTCAACTG+TGG | - | chr5_1:23950666-23950685 | None:intergenic | 35.0% | |
| TGGCCAAGTATAAATTCTGA+AGG | + | chr5_1:23950748-23950767 | Msa0724840:intron | 35.0% | |
| TGAAACTTGCAACTTGGAAT+GGG | - | chr5_1:23950850-23950869 | None:intergenic | 35.0% | |
| TTGAAACTTGCAACTTGGAA+TGG | - | chr5_1:23950851-23950870 | None:intergenic | 35.0% | |
| TTCAAAGGGAAACGTATCTT+AGG | - | chr5_1:23950895-23950914 | None:intergenic | 35.0% | |
| ACCTAGATATATAAAAGGGG+CGG | + | chr5_1:23950924-23950943 | Msa0724840:intron | 35.0% | |
| ! | TTAGTCTCTTTTCATAGCCA+TGG | - | chr5_1:23951045-23951064 | None:intergenic | 35.0% |
| TTGTTCTTACAAAGGGGATT+CGG | - | chr5_1:23951092-23951111 | None:intergenic | 35.0% | |
| TCCACTTTGTTCTTACAAAG+GGG | - | chr5_1:23951098-23951117 | None:intergenic | 35.0% | |
| AGCAAGAACAATCAAGAATC+AGG | + | chr5_1:23951260-23951279 | Msa0724840:intron | 35.0% | |
| ! | CCTACACTTTGTTTGTTGAA+TGG | - | chr5_1:23951289-23951308 | None:intergenic | 35.0% |
| CCATTCAACAAACAAAGTGT+AGG | + | chr5_1:23951286-23951305 | Msa0724840:intron | 35.0% | |
| ! | TACTTTGAAGAACCCAGAAT+GGG | - | chr5_1:23951654-23951673 | None:intergenic | 35.0% |
| GAATTTCAACAGGTGACAAA+AGG | - | chr5_1:23951718-23951737 | None:intergenic | 35.0% | |
| CGCTTCTTCAGAATATGAAT+AGG | - | chr5_1:23951863-23951882 | None:intergenic | 35.0% | |
| ! | AAAAGTGTACTTATCCCCAA+TGG | - | chr5_1:23951887-23951906 | None:intergenic | 35.0% |
| CTTAAGCAGAAAAAGTTTGG+TGG | + | chr5_1:23952340-23952359 | Msa0724840:intron | 35.0% | |
| GAAATGTATCCAAGCTAACT+AGG | + | chr5_1:23952627-23952646 | Msa0724840:intron | 35.0% | |
| ATAATCTCATCCTATCCTAC+AGG | - | chr5_1:23952789-23952808 | None:intergenic | 35.0% | |
| AGGATAGGATGAGATTATGA+TGG | + | chr5_1:23952791-23952810 | Msa0724840:intron | 35.0% | |
| ! | CTGCATTGTAAGTCTGAAAT+TGG | + | chr5_1:23952888-23952907 | Msa0724840:intron | 35.0% |
| GGAGAACTCTTTGTTAAGAA+TGG | + | chr5_1:23952909-23952928 | Msa0724840:intron | 35.0% | |
| CCAGAAATAACATGTCAAGA+AGG | - | chr5_1:23953042-23953061 | None:intergenic | 35.0% | |
| !! | CCTTCTTGACATGTTATTTC+TGG | + | chr5_1:23953039-23953058 | Msa0724840:intron | 35.0% |
| TGGAAACCTAATATCAGACT+TGG | - | chr5_1:23953097-23953116 | None:intergenic | 35.0% | |
| AGCCAAAGACAAACTTTACT+TGG | + | chr5_1:23953145-23953164 | Msa0724840:intron | 35.0% | |
| ! | TTTTGCAGCTATGAAGTGAT+TGG | + | chr5_1:23953314-23953333 | Msa0724840:intron | 35.0% |
| TTCTAATGTGACTTCTTGAC+TGG | + | chr5_1:23953537-23953556 | Msa0724840:intron | 35.0% | |
| ATGGTACCTCAAACTCTAAA+TGG | + | chr5_1:23953581-23953600 | Msa0724840:intron | 35.0% | |
| ATAGGAATGTATCTAGTGAG+AGG | + | chr5_1:23953669-23953688 | Msa0724840:intron | 35.0% | |
| TAGGAATGTATCTAGTGAGA+GGG | + | chr5_1:23953670-23953689 | Msa0724840:intron | 35.0% | |
| AAAGAAAATGTTAAGGGCAG+CGG | - | chr5_1:23953822-23953841 | None:intergenic | 35.0% | |
| CTACAATATATGACATGCCT+AGG | - | chr5_1:23953948-23953967 | None:intergenic | 35.0% | |
| GAAATCATGAAAGACAGGGT+AGG | - | chr5_1:23947710-23947729 | None:intergenic | 40.0% | |
| ACCCATTTGGCTATATACTG+AGG | + | chr5_1:23948279-23948298 | Msa0724840:intron | 40.0% | |
| GCCTCAGTATATAGCCAAAT+GGG | - | chr5_1:23948283-23948302 | None:intergenic | 40.0% | |
| AGCCTCAGTATATAGCCAAA+TGG | - | chr5_1:23948284-23948303 | None:intergenic | 40.0% | |
| TTTGGCTATATACTGAGGCT+TGG | + | chr5_1:23948284-23948303 | Msa0724840:intron | 40.0% | |
| CGAGTATTTAGGGAGAGATA+AGG | + | chr5_1:23948364-23948383 | Msa0724840:intron | 40.0% | |
| TTGGAGTTGTGGATAAGACT+AGG | + | chr5_1:23948480-23948499 | Msa0724840:intron | 40.0% | |
| ! | AGGTCAAATCTAGTTGATGC+TGG | + | chr5_1:23948635-23948654 | Msa0724840:intron | 40.0% |
| AATCTGACACCCCAAACAAA+TGG | + | chr5_1:23948694-23948713 | Msa0724840:intron | 40.0% | |
| CTGCAACATATGATGAACCT+TGG | + | chr5_1:23949065-23949084 | Msa0724840:CDS | 40.0% | |
| TTGAAGGGGCTGTATATGTA+TGG | + | chr5_1:23949305-23949324 | Msa0724840:CDS | 40.0% | |
| AGAGACAACATGATGTGTCA+TGG | - | chr5_1:23949402-23949421 | None:intergenic | 40.0% | |
| ACAATCTCTCTGATGAGCTA+TGG | - | chr5_1:23949723-23949742 | None:intergenic | 40.0% | |
| ATAGCTCATCAGAGAGATTG+TGG | + | chr5_1:23949722-23949741 | Msa0724840:intron | 40.0% | |
| TAACTGCATTGTTGATGCCT+TGG | - | chr5_1:23949758-23949777 | None:intergenic | 40.0% | |
| GTAATGTCCATATGGTTCCT+TGG | - | chr5_1:23949861-23949880 | None:intergenic | 40.0% | |
| !!! | CCACCAGAACTTTTGTTTTG+TGG | - | chr5_1:23950057-23950076 | None:intergenic | 40.0% |
| ! | CCACAAAACAAAAGTTCTGG+TGG | + | chr5_1:23950054-23950073 | Msa0724840:intron | 40.0% |
| ! | AAAACAAAAGTTCTGGTGGG+CGG | + | chr5_1:23950058-23950077 | Msa0724840:intron | 40.0% |
| TCAACTGGTGCAAACTGATA+TGG | - | chr5_1:23950096-23950115 | None:intergenic | 40.0% | |
| CATGTTCAGCTCATGATGAA+TGG | + | chr5_1:23950310-23950329 | Msa0724840:intron | 40.0% | |
| TTCAGCTCATGATGAATGGT+GGG | + | chr5_1:23950314-23950333 | Msa0724840:intron | 40.0% | |
| ATTTCCATCACCTATGTTCC+GGG | + | chr5_1:23950404-23950423 | Msa0724840:intron | 40.0% | |
| CAATCTATGCTAATGCTACC+CGG | - | chr5_1:23950425-23950444 | None:intergenic | 40.0% | |
| TATGCAGTGCTAGATTCCTA+AGG | - | chr5_1:23950514-23950533 | None:intergenic | 40.0% | |
| ATGAAGGGAGCTTAGCTATA+AGG | - | chr5_1:23950616-23950635 | None:intergenic | 40.0% | |
| ! | AAATTTCAACTGTGGCTTGG+AGG | - | chr5_1:23950658-23950677 | None:intergenic | 40.0% |
| TTGGCCAATCAAGCTATTGA+AGG | - | chr5_1:23950735-23950754 | None:intergenic | 40.0% | |
| AGGGATAACTGATAACTAGC+AGG | - | chr5_1:23950786-23950805 | None:intergenic | 40.0% | |
| !! | CCTTCTGACTATAATGGACA+GGG | - | chr5_1:23950825-23950844 | None:intergenic | 40.0% |
| !! | ACCTTCTGACTATAATGGAC+AGG | - | chr5_1:23950826-23950845 | None:intergenic | 40.0% |
| TGGGTACCTTCTGACTATAA+TGG | - | chr5_1:23950831-23950850 | None:intergenic | 40.0% | |
| ! | GATACGTTTCCCTTTGAAGA+CGG | + | chr5_1:23950897-23950916 | Msa0724840:intron | 40.0% |
| ! | ATACGTTTCCCTTTGAAGAC+GGG | + | chr5_1:23950898-23950917 | Msa0724840:intron | 40.0% |
| ! | ACCGCCCCTTTTATATATCT+AGG | - | chr5_1:23950928-23950947 | None:intergenic | 40.0% |
| TCCCCTTTGTAAGAACAAAG+TGG | + | chr5_1:23951094-23951113 | Msa0724840:intron | 40.0% | |
| ! | AAAGTGGAAATCGGCTTTCA+TGG | + | chr5_1:23951110-23951129 | Msa0724840:intron | 40.0% |
| TTCACGGCTTTCATGGAAAT+TGG | + | chr5_1:23951169-23951188 | Msa0724840:intron | 40.0% | |
| !! | ATGGAAATTGGCTTTCAGTG+TGG | + | chr5_1:23951181-23951200 | Msa0724840:intron | 40.0% |
| ! | ACACTCAGGTTTGTTCGAAT+TGG | + | chr5_1:23951484-23951503 | Msa0724840:intron | 40.0% |
| CACATCAGTAGCATCATGAA+GGG | - | chr5_1:23951524-23951543 | None:intergenic | 40.0% | |
| ACACATCAGTAGCATCATGA+AGG | - | chr5_1:23951525-23951544 | None:intergenic | 40.0% | |
| TGATGCTACTGATGTGTTTC+TGG | + | chr5_1:23951528-23951547 | Msa0724840:CDS | 40.0% | |
| !! | ACTGATGTGTTTCTGGAGAT+AGG | + | chr5_1:23951535-23951554 | Msa0724840:CDS | 40.0% |
| GGCAAAATGTCCATATACAG+CGG | + | chr5_1:23951556-23951575 | Msa0724840:CDS | 40.0% | |
| ! | GTACTTTGAAGAACCCAGAA+TGG | - | chr5_1:23951655-23951674 | None:intergenic | 40.0% |
| TCTGGGTTCTTCAAAGTACA+AGG | + | chr5_1:23951656-23951675 | Msa0724840:CDS | 40.0% | |
| ! | TATTCTGAAGAAGCGACCAT+TGG | + | chr5_1:23951868-23951887 | Msa0724840:intron | 40.0% |
| ! | ATTCTGAAGAAGCGACCATT+GGG | + | chr5_1:23951869-23951888 | Msa0724840:intron | 40.0% |
| AATGGATGACCTAGTTAGCT+TGG | - | chr5_1:23952639-23952658 | None:intergenic | 40.0% | |
| !! | TTTTGCTGCTTCAAACTGAG+AGG | + | chr5_1:23952663-23952682 | Msa0724840:intron | 40.0% |
| AAACTGAGAGGTCAGGATTA+AGG | + | chr5_1:23952675-23952694 | Msa0724840:intron | 40.0% | |
| GAGGACATTGTGTGTATGTT+TGG | + | chr5_1:23952751-23952770 | Msa0724840:intron | 40.0% | |
| !!! | ACAGCTCTAGCGTTACTTTT+GGG | - | chr5_1:23953246-23953265 | None:intergenic | 40.0% |
| AGTGATTGGCACCTTGAAAT+TGG | + | chr5_1:23953328-23953347 | Msa0724840:CDS | 40.0% | |
| CAGATGCTTGTCCAATTTCA+AGG | - | chr5_1:23953342-23953361 | None:intergenic | 40.0% | |
| CTTGAAATTGGACAAGCATC+TGG | + | chr5_1:23953340-23953359 | Msa0724840:CDS | 40.0% | |
| TTGGTCAAATCTGCGCAAAA+GGG | + | chr5_1:23953459-23953478 | Msa0724840:CDS | 40.0% | |
| ! | GAGGTACCATTTCTTGTAGT+TGG | - | chr5_1:23953571-23953590 | None:intergenic | 40.0% |
| ATTTGCGCAGAAACGTGTAT+AGG | + | chr5_1:23953646-23953665 | Msa0724840:intron | 40.0% | |
| ! | AACAACTGACTTCCCTTGAC+TGG | + | chr5_1:23947674-23947693 | Msa0724840:CDS | 45.0% |
| GGATTCTTGTTGCCAGTCAA+GGG | - | chr5_1:23947689-23947708 | None:intergenic | 45.0% | |
| AGGATTCTTGTTGCCAGTCA+AGG | - | chr5_1:23947690-23947709 | None:intergenic | 45.0% | |
| CGAGAAGAAAACGAAGGGAA+GGG | - | chr5_1:23947762-23947781 | None:intergenic | 45.0% | |
| TCGAGAAGAAAACGAAGGGA+AGG | - | chr5_1:23947763-23947782 | None:intergenic | 45.0% | |
| GCTGTCGAGAAGAAAACGAA+GGG | - | chr5_1:23947767-23947786 | None:intergenic | 45.0% | |
| AGCTGTCGAGAAGAAAACGA+AGG | - | chr5_1:23947768-23947787 | None:intergenic | 45.0% | |
| TCTCGACAGCTTCATCTTTG+AGG | + | chr5_1:23947777-23947796 | Msa0724840:CDS | 45.0% | |
| AGTCAGACACTGGACAAGTT+GGG | - | chr5_1:23948036-23948055 | None:intergenic | 45.0% | |
| AGCAGGCCGAATCTTTATTC+CGG | + | chr5_1:23948072-23948091 | Msa0724840:intron | 45.0% | |
| ! | TCTAGTTGATGCTGGTTGCT+TGG | + | chr5_1:23948643-23948662 | Msa0724840:intron | 45.0% |
| ! | ATGCTGGTTGCTTGGATGAT+AGG | + | chr5_1:23948651-23948670 | Msa0724840:intron | 45.0% |
| AGGTTACATTGAGGTGTGTG+TGG | + | chr5_1:23948739-23948758 | Msa0724840:intron | 45.0% | |
| ATTTGCAGAAAGTGGCCAGA+CGG | + | chr5_1:23948915-23948934 | Msa0724840:intron | 45.0% | |
| !!! | AAATATTTTTGGGTCGGGCC+AGG | + | chr5_1:23949100-23949119 | Msa0724840:CDS | 45.0% |
| !!! | AATATTTTTGGGTCGGGCCA+GGG | + | chr5_1:23949101-23949120 | Msa0724840:CDS | 45.0% |
| AGAAGGGTTACAAGATTGGG+AGG | + | chr5_1:23949597-23949616 | Msa0724840:intron | 45.0% | |
| ATCTCTCTGATGAGCTATGG+TGG | - | chr5_1:23949720-23949739 | None:intergenic | 45.0% | |
| ATATGGTTCCTTGGACCACA+AGG | - | chr5_1:23949852-23949871 | None:intergenic | 45.0% | |
| TTGTGGTCCAAGGAACCATA+TGG | + | chr5_1:23949851-23949870 | Msa0724840:intron | 45.0% | |
| ATATGGTTCCTTGGACCACA+AGG | - | chr5_1:23949852-23949871 | None:intergenic | 45.0% | |
| TTGTGGTCCAAGGAACCATA+TGG | + | chr5_1:23949851-23949870 | Msa0724840:intron | 45.0% | |
| GCAATGTCCATATGGTTCCT+TGG | - | chr5_1:23949963-23949982 | None:intergenic | 45.0% | |
| GGCCTTTAGCAATGTCCATA+TGG | - | chr5_1:23949971-23949990 | None:intergenic | 45.0% | |
| GCAAGGGCTGGAATAACTTA+TGG | - | chr5_1:23950023-23950042 | None:intergenic | 45.0% | |
| !! | GAGATTTTTCTAGCAAGGGC+TGG | - | chr5_1:23950035-23950054 | None:intergenic | 45.0% |
| GATGTTCCATCTGCCATCTA+AGG | + | chr5_1:23950271-23950290 | Msa0724840:intron | 45.0% | |
| GTTCAGCTCATGATGAATGG+TGG | + | chr5_1:23950313-23950332 | Msa0724840:intron | 45.0% | |
| AAGTGCCCATTGACCTTTGT+TGG | + | chr5_1:23950535-23950554 | Msa0724840:intron | 45.0% | |
| CTGCTATGTTGCACCTATGT+TGG | - | chr5_1:23950571-23950590 | None:intergenic | 45.0% | |
| GCTAAGCTCCCTTCATTAAG+TGG | + | chr5_1:23950620-23950639 | Msa0724840:intron | 45.0% | |
| !! | TATAATGGACAGGGTACAGC+AGG | - | chr5_1:23950816-23950835 | None:intergenic | 45.0% |
| CCCTGTCCATTATAGTCAGA+AGG | + | chr5_1:23950822-23950841 | Msa0724840:intron | 45.0% | |
| TAGGTGTTCCCGTCTTCAAA+GGG | - | chr5_1:23950909-23950928 | None:intergenic | 45.0% | |
| ATTGGCCAGAATACTCACCA+TGG | + | chr5_1:23951025-23951044 | Msa0724840:intron | 45.0% | |
| CATAGCCATGGTGAGTATTC+TGG | - | chr5_1:23951033-23951052 | None:intergenic | 45.0% | |
| ! | GGATTCGGTAAGTGCAAATG+TGG | - | chr5_1:23951077-23951096 | None:intergenic | 45.0% |
| AGCATGCACAAACGTCTTCA+CGG | + | chr5_1:23951153-23951172 | Msa0724840:intron | 45.0% | |
| AAACGTCTTCACGGCTTTCA+TGG | + | chr5_1:23951162-23951181 | Msa0724840:intron | 45.0% | |
| ! | CTTGAAAGATGATTTGCCCG+TGG | - | chr5_1:23951229-23951248 | None:intergenic | 45.0% |
| AGTGTAGGGCTTGATTAGAG+AGG | + | chr5_1:23951301-23951320 | Msa0724840:intron | 45.0% | |
| TGATTCTGCACCGCTGTATA+TGG | - | chr5_1:23951569-23951588 | None:intergenic | 45.0% | |
| ! | TTCTGAAGAAGCGACCATTG+GGG | + | chr5_1:23951870-23951889 | Msa0724840:intron | 45.0% |
| CATTTGGCAGTTAGGCTAAG+AGG | + | chr5_1:23952732-23952751 | Msa0724840:intron | 45.0% | |
| !! | GACAGCTCTAGCGTTACTTT+TGG | - | chr5_1:23953247-23953266 | None:intergenic | 45.0% |
| GAAATTGGACAAGCATCTGG+TGG | + | chr5_1:23953343-23953362 | Msa0724840:CDS | 45.0% | |
| GTTGGTCAAATCTGCGCAAA+AGG | + | chr5_1:23953458-23953477 | Msa0724840:CDS | 45.0% | |
| GCAAATGCATGTAGCAAGGT+AGG | - | chr5_1:23953632-23953651 | None:intergenic | 45.0% | |
| CGCAGAAACGTGTATAGGAT+AGG | + | chr5_1:23953651-23953670 | Msa0724840:intron | 45.0% | |
| GGGAAGAAGAGAGCGAAGAT+AGG | - | chr5_1:23947742-23947761 | None:intergenic | 50.0% | |
| TGTTTATCCAAGCAGGCCCT+TGG | + | chr5_1:23947955-23947974 | Msa0724840:intron | 50.0% | |
| AAGCAGGCCCTTGGTCTATA+GGG | + | chr5_1:23947964-23947983 | Msa0724840:intron | 50.0% | |
| GCTAACGCCCTATAGACCAA+GGG | - | chr5_1:23947974-23947993 | None:intergenic | 50.0% | |
| TGCTAACGCCCTATAGACCA+AGG | - | chr5_1:23947975-23947994 | None:intergenic | 50.0% | |
| ! | TCAGACACTGGACAAGTTGG+GGG | - | chr5_1:23948034-23948053 | None:intergenic | 50.0% |
| GTCAGACACTGGACAAGTTG+GGG | - | chr5_1:23948035-23948054 | None:intergenic | 50.0% | |
| GAGTCAGACACTGGACAAGT+TGG | - | chr5_1:23948037-23948056 | None:intergenic | 50.0% | |
| GGCCGAATCTTTATTCCGGT+AGG | + | chr5_1:23948076-23948095 | Msa0724840:intron | 50.0% | |
| TCTGGCCATATCTGATTCCC+TGG | - | chr5_1:23949121-23949140 | None:intergenic | 50.0% | |
| GGGCTGTATATGTATGGTGC+TGG | + | chr5_1:23949311-23949330 | Msa0724840:CDS | 50.0% | |
| ATTGTGGCCATGCTTAGCCA+AGG | + | chr5_1:23949738-23949757 | Msa0724840:intron | 50.0% | |
| GTTGATGCCTTGGCTAAGCA+TGG | - | chr5_1:23949748-23949767 | None:intergenic | 50.0% | |
| CCATCTCCATGCAATTGCTC+CGG | + | chr5_1:23949821-23949840 | Msa0724840:intron | 50.0% | |
| CCATCTCCATGCAATTGCTC+CGG | + | chr5_1:23949821-23949840 | Msa0724840:intron | 50.0% | |
| ! | AGCTCATGATGAATGGTGGG+TGG | + | chr5_1:23950317-23950336 | Msa0724840:intron | 50.0% |
| !! | GCTCATGATGAATGGTGGGT+GGG | + | chr5_1:23950318-23950337 | Msa0724840:intron | 50.0% |
| GCTAATGCTACCCGGAACAT+AGG | - | chr5_1:23950417-23950436 | None:intergenic | 50.0% | |
| GGGTACAGCAGGTAAATGCA+GGG | - | chr5_1:23950805-23950824 | None:intergenic | 50.0% | |
| AGGGTACAGCAGGTAAATGC+AGG | - | chr5_1:23950806-23950825 | None:intergenic | 50.0% | |
| CTAGGTGTTCCCGTCTTCAA+AGG | - | chr5_1:23950910-23950929 | None:intergenic | 50.0% | |
| ! | GTGGAAATCGGCTTTCATGG+AGG | + | chr5_1:23951113-23951132 | Msa0724840:intron | 50.0% |
| !!! | GTGGAAGCTTTTGGCTCCAT+CGG | - | chr5_1:23951210-23951229 | None:intergenic | 50.0% |
| GATGGAGCCAAAAGCTTCCA+CGG | + | chr5_1:23951209-23951228 | Msa0724840:intron | 50.0% | |
| ATGGAGCCAAAAGCTTCCAC+GGG | + | chr5_1:23951210-23951229 | Msa0724840:intron | 50.0% | |
| ! | GATTTGCCCGTGGAAGCTTT+TGG | - | chr5_1:23951219-23951238 | None:intergenic | 50.0% |
| CCAACAGAACGCAGCGATTT+CGG | + | chr5_1:23951329-23951348 | Msa0724840:intron | 50.0% | |
| CTGCTTCAAACTGAGAGGTC+AGG | + | chr5_1:23952668-23952687 | Msa0724840:intron | 50.0% | |
| !! | ATTGGTGGGTGCTGATGCTT+CGG | + | chr5_1:23953429-23953448 | Msa0724840:CDS | 50.0% |
| CTGATGCTTCGGATGCTTGT+TGG | + | chr5_1:23953440-23953459 | Msa0724840:CDS | 50.0% | |
| CTGCGCAAATGCATGTAGCA+AGG | - | chr5_1:23953636-23953655 | None:intergenic | 50.0% | |
| CTATAGACCAAGGGCCTGCT+TGG | - | chr5_1:23947965-23947984 | None:intergenic | 55.0% | |
| CAAGCAGGCCCTTGGTCTAT+AGG | + | chr5_1:23947963-23947982 | Msa0724840:intron | 55.0% | |
| ! | GACAAGTTGGGGGAGTAGAG+AGG | - | chr5_1:23948024-23948043 | None:intergenic | 55.0% |
| TCGGGCCAGGGAATCAGATA+TGG | + | chr5_1:23949113-23949132 | Msa0724840:CDS | 55.0% | |
| CCGGAGCAATTGCATGGAGA+TGG | - | chr5_1:23949824-23949843 | None:intergenic | 55.0% | |
| GAATCGCCGGAGCAATTGCA+TGG | - | chr5_1:23949830-23949849 | None:intergenic | 55.0% | |
| ATTGCTCCGGCGATTCCTTG+TGG | + | chr5_1:23949834-23949853 | Msa0724840:intron | 55.0% | |
| CTTGGACCACAAGGAATCGC+CGG | - | chr5_1:23949843-23949862 | None:intergenic | 55.0% | |
| CCGGAGCAATTGCATGGAGA+TGG | - | chr5_1:23949824-23949843 | None:intergenic | 55.0% | |
| GAATCGCCGGAGCAATTGCA+TGG | - | chr5_1:23949830-23949849 | None:intergenic | 55.0% | |
| ATTGCTCCGGCGATTCCTTG+TGG | + | chr5_1:23949834-23949853 | Msa0724840:intron | 55.0% | |
| CTTGGACCACAAGGAATCGC+CGG | - | chr5_1:23949843-23949862 | None:intergenic | 55.0% | |
| GCTACCCGGAACATAGGTGA+TGG | - | chr5_1:23950411-23950430 | None:intergenic | 55.0% | |
| GCTTTCAGTGTGGCTTCCGA+TGG | + | chr5_1:23951191-23951210 | Msa0724840:intron | 55.0% | |
| CCGAAATCGCTGCGTTCTGT+TGG | - | chr5_1:23951332-23951351 | None:intergenic | 55.0% | |
| CGGCGATTCCTTGTGGTCCA+AGG | + | chr5_1:23949841-23949860 | Msa0724840:intron | 60.0% | |
| CGGCGATTCCTTGTGGTCCA+AGG | + | chr5_1:23949841-23949860 | Msa0724840:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 23947651 | 23954096 | 23947651 | ID=Msa0724840;Name=Msa0724840 |
| chr5_1 | mRNA | 23947651 | 23954096 | 23947651 | ID=Msa0724840-mRNA-1;Parent=Msa0724840;Name=Msa0724840-mRNA-1;_AED=0.14;_eAED=0.14;_QI=10|1|1|1|0.6|0.66|6|214|308 |
| chr5_1 | exon | 23947651 | 23947798 | 23947651 | ID=Msa0724840-mRNA-1:exon:8815;Parent=Msa0724840-mRNA-1 |
| chr5_1 | exon | 23948923 | 23949152 | 23948923 | ID=Msa0724840-mRNA-1:exon:8816;Parent=Msa0724840-mRNA-1 |
| chr5_1 | exon | 23949298 | 23949453 | 23949298 | ID=Msa0724840-mRNA-1:exon:8817;Parent=Msa0724840-mRNA-1 |
| chr5_1 | exon | 23951492 | 23951677 | 23951492 | ID=Msa0724840-mRNA-1:exon:8818;Parent=Msa0724840-mRNA-1 |
| chr5_1 | exon | 23953322 | 23953506 | 23953322 | ID=Msa0724840-mRNA-1:exon:8819;Parent=Msa0724840-mRNA-1 |
| chr5_1 | exon | 23953851 | 23954096 | 23953851 | ID=Msa0724840-mRNA-1:exon:8820;Parent=Msa0724840-mRNA-1 |
| chr5_1 | five_prime_UTR | 23947651 | 23947660 | 23947651 | ID=Msa0724840-mRNA-1:five_prime_utr;Parent=Msa0724840-mRNA-1 |
| chr5_1 | CDS | 23947661 | 23947798 | 23947661 | ID=Msa0724840-mRNA-1:cds;Parent=Msa0724840-mRNA-1 |
| chr5_1 | CDS | 23948923 | 23949152 | 23948923 | ID=Msa0724840-mRNA-1:cds;Parent=Msa0724840-mRNA-1 |
| chr5_1 | CDS | 23949298 | 23949453 | 23949298 | ID=Msa0724840-mRNA-1:cds;Parent=Msa0724840-mRNA-1 |
| chr5_1 | CDS | 23951492 | 23951677 | 23951492 | ID=Msa0724840-mRNA-1:cds;Parent=Msa0724840-mRNA-1 |
| chr5_1 | CDS | 23953322 | 23953506 | 23953322 | ID=Msa0724840-mRNA-1:cds;Parent=Msa0724840-mRNA-1 |
| chr5_1 | CDS | 23953851 | 23953882 | 23953851 | ID=Msa0724840-mRNA-1:cds;Parent=Msa0724840-mRNA-1 |
| chr5_1 | three_prime_UTR | 23953883 | 23954096 | 23953883 | ID=Msa0724840-mRNA-1:three_prime_utr;Parent=Msa0724840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
