AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0696450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0696450 MtrunA17_Chr8g0386731 87.895 190 5 2 1 190 1 172 2.53e-115 325
Msa0696450 MtrunA17_Chr8g0386721 62.088 182 51 2 6 187 2 165 1.41e-80 236
Msa0696450 MtrunA17_Chr5g0397561 64.324 185 47 3 5 188 3 169 4.04e-77 228
Msa0696450 MtrunA17_Chr8g0391921 58.065 186 60 2 2 187 55 222 2.25e-71 215
Msa0696450 MtrunA17_Chr1g0150061 57.865 178 57 2 12 189 77 236 3.26e-69 210
Msa0696450 MtrunA17_Chr7g0259611 54.645 183 65 2 6 188 4 168 7.53e-67 202
Msa0696450 MtrunA17_Chr1g0185791 52.727 165 66 2 26 189 17 170 2.14e-58 181
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0696450 AT1G63460.1 70.879 182 35 2 8 189 3 166 1.60e-90 262
Msa0696450 AT4G11600.1 67.033 182 42 2 8 189 67 230 1.63e-85 252
Msa0696450 AT4G31870.1 60.112 178 53 2 12 189 74 233 1.28e-70 214
Msa0696450 AT2G43350.2 58.101 179 64 1 10 188 37 204 1.20e-69 211
Msa0696450 AT2G43350.1 58.101 179 64 1 10 188 37 204 1.20e-69 211
Msa0696450 AT2G31570.1 58.989 178 55 2 11 188 6 165 1.48e-68 206
Msa0696450 AT2G25080.1 56.742 178 59 2 12 189 77 236 7.34e-67 204
Msa0696450 AT3G63080.1 53.529 170 68 1 21 190 14 172 2.46e-63 193
Msa0696450 AT2G48150.1 50.549 182 72 2 6 187 4 167 9.49e-60 184
Msa0696450 AT2G48150.2 53.947 152 59 1 36 187 1 141 4.72e-55 171
Msa0696450 AT4G31870.2 58.209 67 21 1 12 78 74 133 2.92e-18 78.6

Find 64 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATTAGGCCTTGAGATTC+TGG 0.187620 4_4:-66453695 Msa0696450:intron
GTGAAGTCGTAGACCGATTT+TGG 0.224009 4_4:+66454402 None:intergenic
AATTCTTAAAGTCAGGTAAA+TGG 0.245816 4_4:-66452949 Msa0696450:CDS
GCATTTCCAAGTAATCAATT+TGG 0.254246 4_4:-66453673 Msa0696450:CDS
AAGCAAACATGTTGTCTATA+AGG 0.304042 4_4:+66452527 None:intergenic
TCCTCGCCAAATTGATTACT+TGG 0.314943 4_4:+66453667 None:intergenic
AAAATCCAATATTTGATCAT+TGG 0.340942 4_4:+66453633 None:intergenic
ATTCTTAAAGTCAGGTAAAT+GGG 0.352395 4_4:-66452948 Msa0696450:CDS
TGGAACCAATGATCAAATAT+TGG 0.356345 4_4:-66453638 Msa0696450:CDS
TTGAATTACCTTATCAAAGA+TGG 0.358414 4_4:+66453582 None:intergenic
ATAGTTAGATGTTATATGAT+TGG 0.368618 4_4:+66452447 None:intergenic
ATAATATTACAACTTCAAAA+AGG 0.409181 4_4:+66452593 None:intergenic
AATATTTGATCATTGGTTCC+AGG 0.413256 4_4:+66453640 None:intergenic
CGAGACATCTGTAAACTACT+TGG 0.422116 4_4:-66452704 Msa0696450:CDS
TTCAATTCTGCAGGATGGTA+AGG 0.423052 4_4:-66454253 Msa0696450:intron
AGAATTCCCCATCTTTGATA+AGG 0.431153 4_4:-66453590 Msa0696450:intron
CAATTTGGCGAGGAAGAACC+TGG 0.436830 4_4:-66453658 Msa0696450:CDS
TTGTTAATGTTGCTTCCAAA+TGG 0.457654 4_4:-66454185 Msa0696450:intron
TTGTATAAATTCTTAAAGTC+AGG 0.461142 4_4:-66452956 Msa0696450:CDS
TGTTGATCTCGCCACTTACA+AGG 0.462862 4_4:-66454223 Msa0696450:CDS
AGTTGTAATATTATGCATAG+TGG 0.465557 4_4:-66452584 Msa0696450:three_prime_UTR
TGAATTACCTTATCAAAGAT+GGG 0.470782 4_4:+66453583 None:intergenic
TAACAGTAAGGATCCAAAAT+CGG 0.474969 4_4:-66454415 Msa0696450:CDS
TTTGGATCCTTACTGTTACT+GGG 0.498091 4_4:+66454420 None:intergenic
ATGGATTCAGCTTGGAAAAG+AGG 0.510743 4_4:-66452663 Msa0696450:three_prime_UTR
TAACTCCACATAATTTGAGT+TGG 0.517130 4_4:+66453869 None:intergenic
ATCCTTGTCAACTAGAAACT+TGG 0.517555 4_4:+66452892 None:intergenic
TGTGCTAGATTGAAGTGAAT+GGG 0.521263 4_4:-66452994 Msa0696450:intron
GAGACATCTGTAAACTACTT+GGG 0.521318 4_4:-66452703 Msa0696450:CDS
GAGGACTTTACCCTTGTAAG+TGG 0.525139 4_4:+66454212 None:intergenic
CATGACCAACTCAAATTATG+TGG 0.528169 4_4:-66453874 Msa0696450:CDS
GAAAGCTCACAGACAGAGAG+AGG 0.529328 4_4:+66454364 None:intergenic
AAGGCTAAGAGGAGAGGTGG+TGG 0.529913 4_4:+66452844 None:intergenic
CCATGTACCTCAAGGCTAAG+AGG 0.532425 4_4:+66452833 None:intergenic
TTGTGCTAGATTGAAGTGAA+TGG 0.540651 4_4:-66452995 Msa0696450:intron
GGGTTGAATGAATACATACA+TGG 0.546639 4_4:-66452682 Msa0696450:exon
TCAATTCTGCAGGATGGTAA+GGG 0.547862 4_4:-66454252 Msa0696450:intron
TGACTTTAAGAATTTATACA+AGG 0.560826 4_4:+66452958 None:intergenic
CAGCGAACCCAGTAACAGTA+AGG 0.563779 4_4:-66454427 Msa0696450:CDS
TGCCAAGTTTCTAGTTGACA+AGG 0.569738 4_4:-66452894 Msa0696450:CDS
CACCTCTCCTCTTAGCCTTG+AGG 0.570064 4_4:-66452840 Msa0696450:intron
ACACTTTGCATTGTTTGCAG+TGG 0.574992 4_4:-66453463 Msa0696450:intron
AGGCTAAGAGGAGAGGTGGT+GGG 0.578274 4_4:+66452845 None:intergenic
ATACATACATGGATTCAGCT+TGG 0.592578 4_4:-66452671 Msa0696450:three_prime_UTR
CTCAAGGCTAAGAGGAGAGG+TGG 0.599220 4_4:+66452841 None:intergenic
AAGTTTCTAGTTGACAAGGA+TGG 0.601035 4_4:-66452890 Msa0696450:CDS
TTCTTAAAGTCAGGTAAATG+GGG 0.604283 4_4:-66452947 Msa0696450:CDS
TTGGAAATGCCAGAATCTCA+AGG 0.604387 4_4:+66453686 None:intergenic
ATTCAGCTTGGAAAAGAGGA+TGG 0.606734 4_4:-66452659 Msa0696450:three_prime_UTR
GAATTACCTTATCAAAGATG+GGG 0.609426 4_4:+66453584 None:intergenic
TGGAAGCAACATTAACAATG+AGG 0.614719 4_4:+66454190 None:intergenic
GACTTTAAGAATTTATACAA+GGG 0.617926 4_4:+66452959 None:intergenic
AGACATCTGTAAACTACTTG+GGG 0.623906 4_4:-66452702 Msa0696450:CDS
TACCTCAAGGCTAAGAGGAG+AGG 0.624418 4_4:+66452838 None:intergenic
TGACAAGGATGGTCAAGTGG+TGG 0.627347 4_4:-66452879 Msa0696450:CDS
AAAGCTCACAGACAGAGAGA+GGG 0.629693 4_4:+66454365 None:intergenic
GTTGATCTCGCCACTTACAA+GGG 0.632755 4_4:-66454222 Msa0696450:CDS
TCCAAGTAATCAATTTGGCG+AGG 0.638053 4_4:-66453668 Msa0696450:CDS
CTCACAGACAGAGAGAGGGA+AGG 0.638465 4_4:+66454369 None:intergenic
GGTCTACGACTTCACTCTCA+AGG 0.640018 4_4:-66454394 Msa0696450:CDS
AGTTGACAAGGATGGTCAAG+TGG 0.640869 4_4:-66452882 Msa0696450:CDS
TATGACAAGTACAAACACAA+AGG 0.684030 4_4:-66453837 Msa0696450:intron
GTGCTAGATTGAAGTGAATG+GGG 0.691263 4_4:-66452993 Msa0696450:intron
AAGCAACATTAACAATGAGG+AGG 0.704587 4_4:+66454193 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAAAGATTATAAGATTAA+GGG - chr4_4:66453567-66453586 Msa0696450:intron 15.0%
!! ATAATATTACAACTTCAAAA+AGG + chr4_4:66454262-66454281 None:intergenic 15.0%
!! GATAAAGATTATAAGATTAA+GGG - chr4_4:66453567-66453586 Msa0696450:intron 15.0%
!! ATAATATTACAACTTCAAAA+AGG + chr4_4:66454262-66454281 None:intergenic 15.0%
!! AAAGAAAGAAACACTAATTT+AGG + chr4_4:66453069-66453088 None:intergenic 20.0%
!! AAAATCCAATATTTGATCAT+TGG + chr4_4:66453222-66453241 None:intergenic 20.0%
!!! TACATATATATCGCAAATTT+TGG + chr4_4:66453478-66453497 None:intergenic 20.0%
!! GGATAAAGATTATAAGATTA+AGG - chr4_4:66453566-66453585 Msa0696450:intron 20.0%
!!! GACTTTAAGAATTTATACAA+GGG + chr4_4:66453896-66453915 None:intergenic 20.0%
!!! TGACTTTAAGAATTTATACA+AGG + chr4_4:66453897-66453916 None:intergenic 20.0%
!! TTGTATAAATTCTTAAAGTC+AGG - chr4_4:66453896-66453915 Msa0696450:intron 20.0%
!! TATATCAATATCAATTGACA+TGG - chr4_4:66454076-66454095 Msa0696450:intron 20.0%
!! ATAGTTAGATGTTATATGAT+TGG + chr4_4:66454408-66454427 None:intergenic 20.0%
!! AAAGAAAGAAACACTAATTT+AGG + chr4_4:66453069-66453088 None:intergenic 20.0%
!! AAAATCCAATATTTGATCAT+TGG + chr4_4:66453222-66453241 None:intergenic 20.0%
!!! TACATATATATCGCAAATTT+TGG + chr4_4:66453478-66453497 None:intergenic 20.0%
!! GGATAAAGATTATAAGATTA+AGG - chr4_4:66453566-66453585 Msa0696450:intron 20.0%
!!! GACTTTAAGAATTTATACAA+GGG + chr4_4:66453896-66453915 None:intergenic 20.0%
!!! TGACTTTAAGAATTTATACA+AGG + chr4_4:66453897-66453916 None:intergenic 20.0%
!! TTGTATAAATTCTTAAAGTC+AGG - chr4_4:66453896-66453915 Msa0696450:intron 20.0%
!! TATATCAATATCAATTGACA+TGG - chr4_4:66454076-66454095 Msa0696450:intron 20.0%
!! ATAGTTAGATGTTATATGAT+TGG + chr4_4:66454408-66454427 None:intergenic 20.0%
! GAAATGAATAAAAGAGAGTA+TGG + chr4_4:66452706-66452725 None:intergenic 25.0%
!! TTTTTATAAACTATCGAGGA+GGG + chr4_4:66452847-66452866 None:intergenic 25.0%
!! ATTTTTATAAACTATCGAGG+AGG + chr4_4:66452848-66452867 None:intergenic 25.0%
!!! GCTATTTTTATAAACTATCG+AGG + chr4_4:66452851-66452870 None:intergenic 25.0%
! AAAGAAACACTAATTTAGGT+TGG + chr4_4:66453065-66453084 None:intergenic 25.0%
! TCAGGTAAACATGTAATATT+TGG + chr4_4:66453105-66453124 None:intergenic 25.0%
! TGAATTACCTTATCAAAGAT+GGG + chr4_4:66453272-66453291 None:intergenic 25.0%
! TTGAATTACCTTATCAAAGA+TGG + chr4_4:66453273-66453292 None:intergenic 25.0%
! TGAAGATCGATAATTACAAT+TGG + chr4_4:66453437-66453456 None:intergenic 25.0%
! GCAGAATAACATTAATCTTA+GGG + chr4_4:66453763-66453782 None:intergenic 25.0%
! TGCAGAATAACATTAATCTT+AGG + chr4_4:66453764-66453783 None:intergenic 25.0%
! AATTCTTAAAGTCAGGTAAA+TGG - chr4_4:66453903-66453922 Msa0696450:intron 25.0%
! ATTCTTAAAGTCAGGTAAAT+GGG - chr4_4:66453904-66453923 Msa0696450:intron 25.0%
! TTCAAAAAGGAACATTACAA+AGG + chr4_4:66454249-66454268 None:intergenic 25.0%
! AGTTGTAATATTATGCATAG+TGG - chr4_4:66454268-66454287 Msa0696450:intron 25.0%
! GAAATGAATAAAAGAGAGTA+TGG + chr4_4:66452706-66452725 None:intergenic 25.0%
!! TTTTTATAAACTATCGAGGA+GGG + chr4_4:66452847-66452866 None:intergenic 25.0%
!! ATTTTTATAAACTATCGAGG+AGG + chr4_4:66452848-66452867 None:intergenic 25.0%
!!! GCTATTTTTATAAACTATCG+AGG + chr4_4:66452851-66452870 None:intergenic 25.0%
! AAAGAAACACTAATTTAGGT+TGG + chr4_4:66453065-66453084 None:intergenic 25.0%
! TCAGGTAAACATGTAATATT+TGG + chr4_4:66453105-66453124 None:intergenic 25.0%
! TGAATTACCTTATCAAAGAT+GGG + chr4_4:66453272-66453291 None:intergenic 25.0%
! TTGAATTACCTTATCAAAGA+TGG + chr4_4:66453273-66453292 None:intergenic 25.0%
! TGAAGATCGATAATTACAAT+TGG + chr4_4:66453437-66453456 None:intergenic 25.0%
! GCAGAATAACATTAATCTTA+GGG + chr4_4:66453763-66453782 None:intergenic 25.0%
! TGCAGAATAACATTAATCTT+AGG + chr4_4:66453764-66453783 None:intergenic 25.0%
! AATTCTTAAAGTCAGGTAAA+TGG - chr4_4:66453903-66453922 Msa0696450:intron 25.0%
! ATTCTTAAAGTCAGGTAAAT+GGG - chr4_4:66453904-66453923 Msa0696450:intron 25.0%
! TTCAAAAAGGAACATTACAA+AGG + chr4_4:66454249-66454268 None:intergenic 25.0%
! AGTTGTAATATTATGCATAG+TGG - chr4_4:66454268-66454287 Msa0696450:intron 25.0%
TAACAGTAAGGATCCAAAAT+CGG - chr4_4:66452437-66452456 Msa0696450:three_prime_UTR 30.0%
GCATAAACAAAACAAAACAG+TGG + chr4_4:66452524-66452543 None:intergenic 30.0%
!! TTTGTTTTCTTCAATTCTGC+AGG - chr4_4:66452590-66452609 Msa0696450:three_prime_UTR 30.0%
! TTGTTAATGTTGCTTCCAAA+TGG - chr4_4:66452667-66452686 Msa0696450:three_prime_UTR 30.0%
! TGAATAAAAGAGAGTATGGT+CGG + chr4_4:66452702-66452721 None:intergenic 30.0%
ACACATCAATTGACACAATT+TGG - chr4_4:66452736-66452755 Msa0696450:intron 30.0%
GCTTAAAGTATAAGTGCTTA+CGG + chr4_4:66452895-66452914 None:intergenic 30.0%
TGCTAAGTAAGCTGTTTATT+TGG - chr4_4:66452915-66452934 Msa0696450:CDS 30.0%
!! GTTTTCGATTGATTTCATTG+AGG - chr4_4:66452949-66452968 Msa0696450:CDS 30.0%
TAACTCCACATAATTTGAGT+TGG + chr4_4:66452986-66453005 None:intergenic 30.0%
TATGACAAGTACAAACACAA+AGG - chr4_4:66453015-66453034 Msa0696450:intron 30.0%
! ACTGAATTGGTAGCTTAATT+AGG - chr4_4:66453143-66453162 Msa0696450:intron 30.0%
GCATTTCCAAGTAATCAATT+TGG - chr4_4:66453179-66453198 Msa0696450:intron 30.0%
!! AATATTTGATCATTGGTTCC+AGG + chr4_4:66453215-66453234 None:intergenic 30.0%
TGGAACCAATGATCAAATAT+TGG - chr4_4:66453214-66453233 Msa0696450:intron 30.0%
GAATTACCTTATCAAAGATG+GGG + chr4_4:66453271-66453290 None:intergenic 30.0%
TTTCAATTATGTGTTTGCAG+TGG - chr4_4:66453358-66453377 Msa0696450:intron 30.0%
CTTGACTATTTGTACTTAGT+TGG - chr4_4:66453545-66453564 Msa0696450:intron 30.0%
! AATGCAAAGTTGCTCTTTTT+GGG + chr4_4:66453631-66453650 None:intergenic 30.0%
TTCTTAAAGTCAGGTAAATG+GGG - chr4_4:66453905-66453924 Msa0696450:intron 30.0%
TCAATATCAATTGACATGGA+TGG - chr4_4:66454080-66454099 Msa0696450:intron 30.0%
AAGCAAACATGTTGTCTATA+AGG + chr4_4:66454328-66454347 None:intergenic 30.0%
TAACAGTAAGGATCCAAAAT+CGG - chr4_4:66452437-66452456 Msa0696450:three_prime_UTR 30.0%
GCATAAACAAAACAAAACAG+TGG + chr4_4:66452524-66452543 None:intergenic 30.0%
!! TTTGTTTTCTTCAATTCTGC+AGG - chr4_4:66452590-66452609 Msa0696450:three_prime_UTR 30.0%
! TTGTTAATGTTGCTTCCAAA+TGG - chr4_4:66452667-66452686 Msa0696450:three_prime_UTR 30.0%
! TGAATAAAAGAGAGTATGGT+CGG + chr4_4:66452702-66452721 None:intergenic 30.0%
ACACATCAATTGACACAATT+TGG - chr4_4:66452736-66452755 Msa0696450:intron 30.0%
GCTTAAAGTATAAGTGCTTA+CGG + chr4_4:66452895-66452914 None:intergenic 30.0%
TGCTAAGTAAGCTGTTTATT+TGG - chr4_4:66452915-66452934 Msa0696450:CDS 30.0%
!! GTTTTCGATTGATTTCATTG+AGG - chr4_4:66452949-66452968 Msa0696450:CDS 30.0%
TAACTCCACATAATTTGAGT+TGG + chr4_4:66452986-66453005 None:intergenic 30.0%
TATGACAAGTACAAACACAA+AGG - chr4_4:66453015-66453034 Msa0696450:intron 30.0%
! ACTGAATTGGTAGCTTAATT+AGG - chr4_4:66453143-66453162 Msa0696450:intron 30.0%
GCATTTCCAAGTAATCAATT+TGG - chr4_4:66453179-66453198 Msa0696450:intron 30.0%
!! AATATTTGATCATTGGTTCC+AGG + chr4_4:66453215-66453234 None:intergenic 30.0%
TGGAACCAATGATCAAATAT+TGG - chr4_4:66453214-66453233 Msa0696450:intron 30.0%
GAATTACCTTATCAAAGATG+GGG + chr4_4:66453271-66453290 None:intergenic 30.0%
TTTCAATTATGTGTTTGCAG+TGG - chr4_4:66453358-66453377 Msa0696450:intron 30.0%
CTTGACTATTTGTACTTAGT+TGG - chr4_4:66453545-66453564 Msa0696450:intron 30.0%
! AATGCAAAGTTGCTCTTTTT+GGG + chr4_4:66453631-66453650 None:intergenic 30.0%
TTCTTAAAGTCAGGTAAATG+GGG - chr4_4:66453905-66453924 Msa0696450:intron 30.0%
TCAATATCAATTGACATGGA+TGG - chr4_4:66454080-66454099 Msa0696450:intron 30.0%
AAGCAAACATGTTGTCTATA+AGG + chr4_4:66454328-66454347 None:intergenic 30.0%
TTTGGATCCTTACTGTTACT+GGG + chr4_4:66452435-66452454 None:intergenic 35.0%
! TTTTGGATCCTTACTGTTAC+TGG + chr4_4:66452436-66452455 None:intergenic 35.0%
! TTTTCTTCAATTCTGCAGGA+TGG - chr4_4:66452594-66452613 Msa0696450:three_prime_UTR 35.0%
AAGCAACATTAACAATGAGG+AGG + chr4_4:66452662-66452681 None:intergenic 35.0%
TGGAAGCAACATTAACAATG+AGG + chr4_4:66452665-66452684 None:intergenic 35.0%
CATGACCAACTCAAATTATG+TGG - chr4_4:66452978-66452997 Msa0696450:CDS 35.0%
ATGAGATGAGATGACTGAAT+TGG - chr4_4:66453130-66453149 Msa0696450:intron 35.0%
TTAATTAGGCCTTGAGATTC+TGG - chr4_4:66453157-66453176 Msa0696450:intron 35.0%
AGAATTCCCCATCTTTGATA+AGG - chr4_4:66453262-66453281 Msa0696450:intron 35.0%
ATTACAGTTCACATTAGCAG+TGG + chr4_4:66453510-66453529 None:intergenic 35.0%
! CAATGCAAAGTTGCTCTTTT+TGG + chr4_4:66453632-66453651 None:intergenic 35.0%
CAAAAAGAGCAACTTTGCAT+TGG - chr4_4:66453630-66453649 Msa0696450:CDS 35.0%
! TTGACTGCACGACTTTTAAT+AGG - chr4_4:66453681-66453700 Msa0696450:CDS 35.0%
AACTTATAAGTTCATCTCCG+TGG - chr4_4:66453834-66453853 Msa0696450:intron 35.0%
TTGTGCTAGATTGAAGTGAA+TGG - chr4_4:66453857-66453876 Msa0696450:CDS 35.0%
TGTGCTAGATTGAAGTGAAT+GGG - chr4_4:66453858-66453877 Msa0696450:CDS 35.0%
! TCAGGTAAATGGGGAATTTT+TGG - chr4_4:66453914-66453933 Msa0696450:intron 35.0%
! CAGGTAAATGGGGAATTTTT+GGG - chr4_4:66453915-66453934 Msa0696450:intron 35.0%
! AGGTAAATGGGGAATTTTTG+GGG - chr4_4:66453916-66453935 Msa0696450:intron 35.0%
!! TTTTTGGGGATGATATTCAG+TGG - chr4_4:66453930-66453949 Msa0696450:intron 35.0%
ATCCTTGTCAACTAGAAACT+TGG + chr4_4:66453963-66453982 None:intergenic 35.0%
!! AAGTTTCTAGTTGACAAGGA+TGG - chr4_4:66453962-66453981 Msa0696450:intron 35.0%
TGTTGCGTATGTAATTCTTC+TGG - chr4_4:66454107-66454126 Msa0696450:intron 35.0%
GAGACATCTGTAAACTACTT+GGG - chr4_4:66454149-66454168 Msa0696450:intron 35.0%
AGACATCTGTAAACTACTTG+GGG - chr4_4:66454150-66454169 Msa0696450:intron 35.0%
GGGTTGAATGAATACATACA+TGG - chr4_4:66454170-66454189 Msa0696450:intron 35.0%
ATACATACATGGATTCAGCT+TGG - chr4_4:66454181-66454200 Msa0696450:intron 35.0%
TTTGGATCCTTACTGTTACT+GGG + chr4_4:66452435-66452454 None:intergenic 35.0%
! TTTTGGATCCTTACTGTTAC+TGG + chr4_4:66452436-66452455 None:intergenic 35.0%
! TTTTCTTCAATTCTGCAGGA+TGG - chr4_4:66452594-66452613 Msa0696450:three_prime_UTR 35.0%
AAGCAACATTAACAATGAGG+AGG + chr4_4:66452662-66452681 None:intergenic 35.0%
TGGAAGCAACATTAACAATG+AGG + chr4_4:66452665-66452684 None:intergenic 35.0%
CATGACCAACTCAAATTATG+TGG - chr4_4:66452978-66452997 Msa0696450:CDS 35.0%
ATGAGATGAGATGACTGAAT+TGG - chr4_4:66453130-66453149 Msa0696450:intron 35.0%
TTAATTAGGCCTTGAGATTC+TGG - chr4_4:66453157-66453176 Msa0696450:intron 35.0%
AGAATTCCCCATCTTTGATA+AGG - chr4_4:66453262-66453281 Msa0696450:intron 35.0%
ATTACAGTTCACATTAGCAG+TGG + chr4_4:66453510-66453529 None:intergenic 35.0%
! CAATGCAAAGTTGCTCTTTT+TGG + chr4_4:66453632-66453651 None:intergenic 35.0%
CAAAAAGAGCAACTTTGCAT+TGG - chr4_4:66453630-66453649 Msa0696450:CDS 35.0%
! TTGACTGCACGACTTTTAAT+AGG - chr4_4:66453681-66453700 Msa0696450:CDS 35.0%
AACTTATAAGTTCATCTCCG+TGG - chr4_4:66453834-66453853 Msa0696450:intron 35.0%
TTGTGCTAGATTGAAGTGAA+TGG - chr4_4:66453857-66453876 Msa0696450:CDS 35.0%
TGTGCTAGATTGAAGTGAAT+GGG - chr4_4:66453858-66453877 Msa0696450:CDS 35.0%
! TCAGGTAAATGGGGAATTTT+TGG - chr4_4:66453914-66453933 Msa0696450:intron 35.0%
! CAGGTAAATGGGGAATTTTT+GGG - chr4_4:66453915-66453934 Msa0696450:intron 35.0%
! AGGTAAATGGGGAATTTTTG+GGG - chr4_4:66453916-66453935 Msa0696450:intron 35.0%
!! TTTTTGGGGATGATATTCAG+TGG - chr4_4:66453930-66453949 Msa0696450:intron 35.0%
ATCCTTGTCAACTAGAAACT+TGG + chr4_4:66453963-66453982 None:intergenic 35.0%
!! AAGTTTCTAGTTGACAAGGA+TGG - chr4_4:66453962-66453981 Msa0696450:intron 35.0%
TGTTGCGTATGTAATTCTTC+TGG - chr4_4:66454107-66454126 Msa0696450:intron 35.0%
GAGACATCTGTAAACTACTT+GGG - chr4_4:66454149-66454168 Msa0696450:intron 35.0%
AGACATCTGTAAACTACTTG+GGG - chr4_4:66454150-66454169 Msa0696450:intron 35.0%
GGGTTGAATGAATACATACA+TGG - chr4_4:66454170-66454189 Msa0696450:intron 35.0%
ATACATACATGGATTCAGCT+TGG - chr4_4:66454181-66454200 Msa0696450:intron 35.0%
TTCAATTCTGCAGGATGGTA+AGG - chr4_4:66452599-66452618 Msa0696450:three_prime_UTR 40.0%
TCAATTCTGCAGGATGGTAA+GGG - chr4_4:66452600-66452619 Msa0696450:three_prime_UTR 40.0%
GGTCGGATATACATACCATT+TGG + chr4_4:66452685-66452704 None:intergenic 40.0%
AACTATCGAGGAGGGATTAT+AGG + chr4_4:66452839-66452858 None:intergenic 40.0%
! GATTGATTTCATTGAGGCAG+TGG - chr4_4:66452955-66452974 Msa0696450:CDS 40.0%
CATCTCATCTCATGTGTATC+AGG + chr4_4:66453123-66453142 None:intergenic 40.0%
TTGGAAATGCCAGAATCTCA+AGG + chr4_4:66453169-66453188 None:intergenic 40.0%
TCCAAGTAATCAATTTGGCG+AGG - chr4_4:66453184-66453203 Msa0696450:intron 40.0%
TCCTCGCCAAATTGATTACT+TGG + chr4_4:66453188-66453207 None:intergenic 40.0%
ACACTTTGCATTGTTTGCAG+TGG - chr4_4:66453389-66453408 Msa0696450:intron 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG - chr4_4:66453590-66453609 Msa0696450:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG - chr4_4:66453591-66453610 Msa0696450:CDS 40.0%
TTCCTTAACATGTGCCCTTA+GGG + chr4_4:66453608-66453627 None:intergenic 40.0%
!! ATGTTAACTTGTGCCCTCAA+GGG + chr4_4:66453738-66453757 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr4_4:66453739-66453758 None:intergenic 40.0%
ACTTCAATCTAGCACAACCA+CGG + chr4_4:66453854-66453873 None:intergenic 40.0%
GTGCTAGATTGAAGTGAATG+GGG - chr4_4:66453859-66453878 Msa0696450:CDS 40.0%
!! TGCCAAGTTTCTAGTTGACA+AGG - chr4_4:66453958-66453977 Msa0696450:intron 40.0%
ATAATGCTCCATGTACCTCA+AGG + chr4_4:66454030-66454049 None:intergenic 40.0%
CGAGACATCTGTAAACTACT+TGG - chr4_4:66454148-66454167 Msa0696450:intron 40.0%
ATGGATTCAGCTTGGAAAAG+AGG - chr4_4:66454189-66454208 Msa0696450:CDS 40.0%
ATTCAGCTTGGAAAAGAGGA+TGG - chr4_4:66454193-66454212 Msa0696450:CDS 40.0%
TTCAATTCTGCAGGATGGTA+AGG - chr4_4:66452599-66452618 Msa0696450:three_prime_UTR 40.0%
TCAATTCTGCAGGATGGTAA+GGG - chr4_4:66452600-66452619 Msa0696450:three_prime_UTR 40.0%
GGTCGGATATACATACCATT+TGG + chr4_4:66452685-66452704 None:intergenic 40.0%
AACTATCGAGGAGGGATTAT+AGG + chr4_4:66452839-66452858 None:intergenic 40.0%
! GATTGATTTCATTGAGGCAG+TGG - chr4_4:66452955-66452974 Msa0696450:CDS 40.0%
CATCTCATCTCATGTGTATC+AGG + chr4_4:66453123-66453142 None:intergenic 40.0%
TTGGAAATGCCAGAATCTCA+AGG + chr4_4:66453169-66453188 None:intergenic 40.0%
TCCAAGTAATCAATTTGGCG+AGG - chr4_4:66453184-66453203 Msa0696450:intron 40.0%
TCCTCGCCAAATTGATTACT+TGG + chr4_4:66453188-66453207 None:intergenic 40.0%
ACACTTTGCATTGTTTGCAG+TGG - chr4_4:66453389-66453408 Msa0696450:intron 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG - chr4_4:66453590-66453609 Msa0696450:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG - chr4_4:66453591-66453610 Msa0696450:CDS 40.0%
TTCCTTAACATGTGCCCTTA+GGG + chr4_4:66453608-66453627 None:intergenic 40.0%
!! ATGTTAACTTGTGCCCTCAA+GGG + chr4_4:66453738-66453757 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr4_4:66453739-66453758 None:intergenic 40.0%
ACTTCAATCTAGCACAACCA+CGG + chr4_4:66453854-66453873 None:intergenic 40.0%
GTGCTAGATTGAAGTGAATG+GGG - chr4_4:66453859-66453878 Msa0696450:CDS 40.0%
!! TGCCAAGTTTCTAGTTGACA+AGG - chr4_4:66453958-66453977 Msa0696450:intron 40.0%
ATAATGCTCCATGTACCTCA+AGG + chr4_4:66454030-66454049 None:intergenic 40.0%
CGAGACATCTGTAAACTACT+TGG - chr4_4:66454148-66454167 Msa0696450:intron 40.0%
ATGGATTCAGCTTGGAAAAG+AGG - chr4_4:66454189-66454208 Msa0696450:CDS 40.0%
ATTCAGCTTGGAAAAGAGGA+TGG - chr4_4:66454193-66454212 Msa0696450:CDS 40.0%
!! GTGAAGTCGTAGACCGATTT+TGG + chr4_4:66452453-66452472 None:intergenic 45.0%
AAAGCTCACAGACAGAGAGA+GGG + chr4_4:66452490-66452509 None:intergenic 45.0%
TGTTGATCTCGCCACTTACA+AGG - chr4_4:66452629-66452648 Msa0696450:three_prime_UTR 45.0%
GTTGATCTCGCCACTTACAA+GGG - chr4_4:66452630-66452649 Msa0696450:three_prime_UTR 45.0%
GAGGACTTTACCCTTGTAAG+TGG + chr4_4:66452643-66452662 None:intergenic 45.0%
CGATATCACAAGTGTGCTTC+TGG + chr4_4:66452788-66452807 None:intergenic 45.0%
GTTCCTTAACATGTGCCCTT+AGG + chr4_4:66453720-66453739 None:intergenic 45.0%
TTCCTTAACATGTGCCCTTG+AGG - chr4_4:66453721-66453740 Msa0696450:intron 45.0%
TCCTTAACATGTGCCCTTGA+GGG - chr4_4:66453722-66453741 Msa0696450:intron 45.0%
AGTTGACAAGGATGGTCAAG+TGG - chr4_4:66453970-66453989 Msa0696450:intron 45.0%
!! GTGAAGTCGTAGACCGATTT+TGG + chr4_4:66452453-66452472 None:intergenic 45.0%
AAAGCTCACAGACAGAGAGA+GGG + chr4_4:66452490-66452509 None:intergenic 45.0%
TGTTGATCTCGCCACTTACA+AGG - chr4_4:66452629-66452648 Msa0696450:three_prime_UTR 45.0%
GTTGATCTCGCCACTTACAA+GGG - chr4_4:66452630-66452649 Msa0696450:three_prime_UTR 45.0%
GAGGACTTTACCCTTGTAAG+TGG + chr4_4:66452643-66452662 None:intergenic 45.0%
CGATATCACAAGTGTGCTTC+TGG + chr4_4:66452788-66452807 None:intergenic 45.0%
GTTCCTTAACATGTGCCCTT+AGG + chr4_4:66453720-66453739 None:intergenic 45.0%
TTCCTTAACATGTGCCCTTG+AGG - chr4_4:66453721-66453740 Msa0696450:intron 45.0%
TCCTTAACATGTGCCCTTGA+GGG - chr4_4:66453722-66453741 Msa0696450:intron 45.0%
AGTTGACAAGGATGGTCAAG+TGG - chr4_4:66453970-66453989 Msa0696450:intron 45.0%
CAGCGAACCCAGTAACAGTA+AGG - chr4_4:66452425-66452444 Msa0696450:three_prime_UTR 50.0%
GGTCTACGACTTCACTCTCA+AGG - chr4_4:66452458-66452477 Msa0696450:three_prime_UTR 50.0%
GAAAGCTCACAGACAGAGAG+AGG + chr4_4:66452491-66452510 None:intergenic 50.0%
CAATTTGGCGAGGAAGAACC+TGG - chr4_4:66453194-66453213 Msa0696450:intron 50.0%
GCCTCTGCACTATGTTTGCT+CGG - chr4_4:66453329-66453348 Msa0696450:intron 50.0%
ACCGAGCAAACATAGTGCAG+AGG + chr4_4:66453333-66453352 None:intergenic 50.0%
! TGCCCTAAGGGCACATGTTA+AGG - chr4_4:66453603-66453622 Msa0696450:CDS 50.0%
TGACAAGGATGGTCAAGTGG+TGG - chr4_4:66453973-66453992 Msa0696450:intron 50.0%
TACCTCAAGGCTAAGAGGAG+AGG + chr4_4:66454017-66454036 None:intergenic 50.0%
CCATGTACCTCAAGGCTAAG+AGG + chr4_4:66454022-66454041 None:intergenic 50.0%
!! CCTCTTAGCCTTGAGGTACA+TGG - chr4_4:66454019-66454038 Msa0696450:intron 50.0%
CAGCGAACCCAGTAACAGTA+AGG - chr4_4:66452425-66452444 Msa0696450:three_prime_UTR 50.0%
GGTCTACGACTTCACTCTCA+AGG - chr4_4:66452458-66452477 Msa0696450:three_prime_UTR 50.0%
GAAAGCTCACAGACAGAGAG+AGG + chr4_4:66452491-66452510 None:intergenic 50.0%
CAATTTGGCGAGGAAGAACC+TGG - chr4_4:66453194-66453213 Msa0696450:intron 50.0%
GCCTCTGCACTATGTTTGCT+CGG - chr4_4:66453329-66453348 Msa0696450:intron 50.0%
ACCGAGCAAACATAGTGCAG+AGG + chr4_4:66453333-66453352 None:intergenic 50.0%
! TGCCCTAAGGGCACATGTTA+AGG - chr4_4:66453603-66453622 Msa0696450:CDS 50.0%
TGACAAGGATGGTCAAGTGG+TGG - chr4_4:66453973-66453992 Msa0696450:intron 50.0%
TACCTCAAGGCTAAGAGGAG+AGG + chr4_4:66454017-66454036 None:intergenic 50.0%
CCATGTACCTCAAGGCTAAG+AGG + chr4_4:66454022-66454041 None:intergenic 50.0%
!! CCTCTTAGCCTTGAGGTACA+TGG - chr4_4:66454019-66454038 Msa0696450:intron 50.0%
CTCACAGACAGAGAGAGGGA+AGG + chr4_4:66452486-66452505 None:intergenic 55.0%
! GCCCTCAAGGGCACATGTTA+AGG + chr4_4:66453726-66453745 None:intergenic 55.0%
AGGCTAAGAGGAGAGGTGGT+GGG + chr4_4:66454010-66454029 None:intergenic 55.0%
AAGGCTAAGAGGAGAGGTGG+TGG + chr4_4:66454011-66454030 None:intergenic 55.0%
CTCAAGGCTAAGAGGAGAGG+TGG + chr4_4:66454014-66454033 None:intergenic 55.0%
!! CACCTCTCCTCTTAGCCTTG+AGG - chr4_4:66454012-66454031 Msa0696450:intron 55.0%
CTCACAGACAGAGAGAGGGA+AGG + chr4_4:66452486-66452505 None:intergenic 55.0%
! GCCCTCAAGGGCACATGTTA+AGG + chr4_4:66453726-66453745 None:intergenic 55.0%
AGGCTAAGAGGAGAGGTGGT+GGG + chr4_4:66454010-66454029 None:intergenic 55.0%
AAGGCTAAGAGGAGAGGTGG+TGG + chr4_4:66454011-66454030 None:intergenic 55.0%
CTCAAGGCTAAGAGGAGAGG+TGG + chr4_4:66454014-66454033 None:intergenic 55.0%
!! CACCTCTCCTCTTAGCCTTG+AGG - chr4_4:66454012-66454031 Msa0696450:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 66452420 66454454 66452420 ID=Msa0696450;Name=Msa0696450
chr4_4 mRNA 66452420 66454454 66452420 ID=Msa0696450-mRNA-1;Parent=Msa0696450;Name=Msa0696450-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.66|0.71|0.85|1|1|7|274|190
chr4_4 exon 66452420 66452726 66452420 ID=Msa0696450-mRNA-1:exon:19318;Parent=Msa0696450-mRNA-1
chr4_4 exon 66452841 66453008 66452841 ID=Msa0696450-mRNA-1:exon:19317;Parent=Msa0696450-mRNA-1
chr4_4 exon 66453464 66453496 66453464 ID=Msa0696450-mRNA-1:exon:19316;Parent=Msa0696450-mRNA-1
chr4_4 exon 66453591 66453709 66453591 ID=Msa0696450-mRNA-1:exon:19315;Parent=Msa0696450-mRNA-1
chr4_4 exon 66453838 66453899 66453838 ID=Msa0696450-mRNA-1:exon:19314;Parent=Msa0696450-mRNA-1
chr4_4 exon 66454186 66454262 66454186 ID=Msa0696450-mRNA-1:exon:19313;Parent=Msa0696450-mRNA-1
chr4_4 exon 66454374 66454454 66454374 ID=Msa0696450-mRNA-1:exon:19312;Parent=Msa0696450-mRNA-1
chr4_4 CDS 66454374 66454454 66454374 ID=Msa0696450-mRNA-1:cds;Parent=Msa0696450-mRNA-1
chr4_4 CDS 66454186 66454262 66454186 ID=Msa0696450-mRNA-1:cds;Parent=Msa0696450-mRNA-1
chr4_4 CDS 66453838 66453899 66453838 ID=Msa0696450-mRNA-1:cds;Parent=Msa0696450-mRNA-1
chr4_4 CDS 66453591 66453709 66453591 ID=Msa0696450-mRNA-1:cds;Parent=Msa0696450-mRNA-1
chr4_4 CDS 66453464 66453496 66453464 ID=Msa0696450-mRNA-1:cds;Parent=Msa0696450-mRNA-1
chr4_4 CDS 66452841 66453008 66452841 ID=Msa0696450-mRNA-1:cds;Parent=Msa0696450-mRNA-1
chr4_4 CDS 66452694 66452726 66452694 ID=Msa0696450-mRNA-1:cds;Parent=Msa0696450-mRNA-1
chr4_4 three_prime_UTR 66452420 66452693 66452420 ID=Msa0696450-mRNA-1:three_prime_utr;Parent=Msa0696450-mRNA-1
Gene Sequence

>Msa0696450

ATGAGCAGCGAACCCAGTAACAGTAAGGATCCAAAATCGGTCTACGACTTCACTCTCAAGGTTCCTTCCCTCTCTCTGTCTGATGGTAAGGGAAATGATGTTGATCTCGCCACTTACAAGGGTAAAGTCCTCCTCATTGTTAATGTTGCTTCCAAATGTGGCATGACCAACTCAAATTATGTGGAGTTAAATCAACTATATGACAAGTACAAACACAAAGGCCTTGAGATTCTGGCATTTCCAAGTAATCAATTTGGCGAGGAAGAACCTGGAACCAATGATCAAATATTGGATTTTGTTTGTACTCGCTTCAAATCAGAATTCCCCATCTTTGATAAGTGGTATGATTTACACTTTGCATTGTTTGCAGTGATTGAAGTGAATGGGGACAATTCTGCTCCCTTGTATAAATTCTTAAAGTCAGGTAAATGGGGAATTTTTGGGGATGATATTCAGTGGAACTTTGCCAAGTTTCTAGTTGACAAGGATGGTCAAGTGGTGGATCGATATTATCCCACCACCTCTCCTCTTAGCCTTGAGCGAGACATCTGTAAACTACTTGGGGTTGAATGA

Protein sequence

>Msa0696450

MSSEPSNSKDPKSVYDFTLKVPSLSLSDGKGNDVDLATYKGKVLLIVNVASKCGMTNSNYVELNQLYDKYKHKGLEILAFPSNQFGEEEPGTNDQILDFVCTRFKSEFPIFDKWYDLHFALFAVIEVNGDNSAPLYKFLKSGKWGIFGDDIQWNFAKFLVDKDGQVVDRYYPTTSPLSLERDICKLLGVE*