AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0086650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086650 MtrunA17_Chr1g0202421 85.542 332 17 5 1 320 1 313 0.0 547
Msa0086650 MtrunA17_Chr8g0387621 30.084 359 159 12 1 290 1 336 3.96e-26 106
Msa0086650 MtrunA17_Chr5g0397131 38.767 227 89 12 104 295 159 370 4.18e-25 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086650 AT5G52870.2 33.117 308 150 12 1 294 1 266 2.46e-28 111
Msa0086650 AT5G52870.1 33.117 308 150 12 1 294 1 266 2.92e-28 112
Msa0086650 AT1G64080.1 44.444 126 40 3 199 295 266 390 8.27e-18 84.0

Find 71 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAAACTCGCTCTGTTT+TGG 0.159958 1_2:-67380758 None:intergenic
TAGGGGTGATGATTAGTAAT+AGG 0.303727 1_2:+67381377 Msa0086650:three_prime_UTR
CTTTAAACTTCCTCAAGTTC+TGG 0.310344 1_2:+67380197 Msa0086650:CDS
CACCGGCGGTTGGCTCTTTG+AGG 0.337288 1_2:+67380902 Msa0086650:CDS
GAAACTTTGGTGGCAAAATT+CGG 0.355433 1_2:+67380716 Msa0086650:CDS
AATGAAATGAAATTAGATTA+GGG 0.364082 1_2:+67381359 Msa0086650:three_prime_UTR
GATTAAGCCTCTTTATGTTA+AGG 0.375290 1_2:+67380807 Msa0086650:CDS
ATAGAGAGAGAATAGTGTTT+AGG 0.382447 1_2:-67380148 None:intergenic
AAATGAAATGAAATTAGATT+AGG 0.383083 1_2:+67381358 Msa0086650:three_prime_UTR
TTCGAAACCTTAACATAAAG+AGG 0.384723 1_2:-67380814 None:intergenic
GAAAGTGGTGACGAAGCATT+TGG 0.391796 1_2:+67380924 Msa0086650:CDS
TTTCATTACTCTTTCTATGC+TGG 0.414240 1_2:-67381311 None:intergenic
TTGGACATGTGGGTCGTCAT+TGG 0.416385 1_2:-67380344 None:intergenic
ATGGATGTTGTTGGTGGTGA+TGG 0.423562 1_2:+67381218 Msa0086650:CDS
GAGCTTGTTCTCCGGCGAAC+AGG 0.426734 1_2:+67380977 Msa0086650:CDS
TTCAGAAAACAGAGAAGAAC+TGG 0.432309 1_2:+67380556 Msa0086650:CDS
CTCTTAACTCTTCCATTCCA+TGG 0.434217 1_2:+67380171 Msa0086650:exon
GATTCTTCAATGGATGTTGT+TGG 0.446904 1_2:+67381209 Msa0086650:intron
AGGTCGTCGGGTACGGTGGC+CGG 0.454518 1_2:+67380955 Msa0086650:CDS
TGCTGATCTTAGAAGTGAAA+TGG 0.459585 1_2:-67380512 None:intergenic
TTCGAAGAGGTATGGTGATA+AGG 0.470661 1_2:+67380831 Msa0086650:CDS
TAAGAGTAGGTCGTCGGGTA+CGG 0.475412 1_2:+67380948 Msa0086650:CDS
ACTCTTCCTTTGTTGTGTTG+TGG 0.477112 1_2:+67381488 Msa0086650:three_prime_UTR
GGTGGCAAAATTCGGAATCA+AGG 0.479447 1_2:+67380724 Msa0086650:CDS
CCGTCTTCTTCACCGGCGGT+TGG 0.485938 1_2:+67380892 Msa0086650:CDS
GTTAAGGTTTCGAAGAGGTA+TGG 0.486790 1_2:+67380823 Msa0086650:CDS
GGTGATAAGGTGAAATTCTC+CGG 0.500103 1_2:+67380844 Msa0086650:CDS
GATGTCTTTCTTGATGATGT+TGG 0.514432 1_2:+67381282 Msa0086650:exon
TGCTTCGCCGTCTTCTTCAC+CGG 0.518483 1_2:+67380885 Msa0086650:CDS
CTGTTCTCTCTACTAAGCAT+TGG 0.523196 1_2:-67380688 None:intergenic
GAGAACAGCACAAGAAACTT+TGG 0.523674 1_2:+67380703 Msa0086650:CDS
AAAGTGGTGACGAAGCATTT+GGG 0.526267 1_2:+67380925 Msa0086650:CDS
AAGATGAGGAACAGTGATGT+TGG 0.527025 1_2:-67380239 None:intergenic
GAGGAAGTTTAAAGCATCCA+TGG 0.529668 1_2:-67380188 None:intergenic
AGCTACCGTCATCCCCTCGC+CGG 0.534216 1_2:-67380863 None:intergenic
CAAAACAGAGCGAGTTTCAA+AGG 0.536455 1_2:+67380759 Msa0086650:CDS
TTTGTTGTCGAAATCATTCA+CGG 0.536529 1_2:-67380320 None:intergenic
TGTTGTTCTTCCAGAACTTG+AGG 0.537675 1_2:-67380207 None:intergenic
GGTTGGCTCTTTGAGGAAAG+TGG 0.542571 1_2:+67380909 Msa0086650:CDS
TTGGGTAAGAGTAGGTCGTC+GGG 0.544095 1_2:+67380943 Msa0086650:CDS
AGTTTAAAGCATCCATGGAA+TGG 0.546782 1_2:-67380183 None:intergenic
AAGGTGAAATTCTCCGGCGA+GGG 0.550532 1_2:+67380850 Msa0086650:CDS
AAGGTAAAGATTCTGAAACT+TGG 0.555444 1_2:-67380535 None:intergenic
AGAAGTGAAATGGGTGATTG+TGG 0.566819 1_2:-67380502 None:intergenic
GGTGGCCGGAGCTTGTTCTC+CGG 0.566890 1_2:+67380969 Msa0086650:CDS
ATTCTCCGGCGAGGGGATGA+CGG 0.568736 1_2:+67380858 Msa0086650:CDS
GCTGATCTTAGAAGTGAAAT+GGG 0.571175 1_2:-67380511 None:intergenic
TTCCTCAAAGAGCCAACCGC+CGG 0.578853 1_2:-67380904 None:intergenic
CGAAGCATTTGGGTAAGAGT+AGG 0.585768 1_2:+67380935 Msa0086650:CDS
TTTGGGTAAGAGTAGGTCGT+CGG 0.592489 1_2:+67380942 Msa0086650:CDS
ACGCTGTTGCAGCAACATGA+TGG 0.598349 1_2:+67381009 Msa0086650:CDS
GTATCATCACTCCTGTTCGC+CGG 0.598908 1_2:-67380988 None:intergenic
TCTTCAATGGATGTTGTTGG+TGG 0.599000 1_2:+67381212 Msa0086650:CDS
CCAACCGCCGGTGAAGAAGA+CGG 0.604637 1_2:-67380892 None:intergenic
GTTCGCCGGAGAACAAGCTC+CGG 0.605965 1_2:-67380974 None:intergenic
GAGTAGGTCGTCGGGTACGG+TGG 0.623063 1_2:+67380951 Msa0086650:CDS
AACAGCACAAGAAACTTTGG+TGG 0.628576 1_2:+67380706 Msa0086650:CDS
TGATTAGTAATAGGTTTGTG+TGG 0.630154 1_2:+67381386 Msa0086650:three_prime_UTR
ATGAAATGAAATTAGATTAG+GGG 0.635263 1_2:+67381360 Msa0086650:three_prime_UTR
TTCGCCGTCTTCTTCACCGG+CGG 0.640158 1_2:+67380888 Msa0086650:CDS
ATGTATTCGTCTTGTGACTG+TGG 0.645057 1_2:+67381590 Msa0086650:three_prime_UTR
TCTGTTTCTACAACAAGATG+AGG 0.645146 1_2:-67380253 None:intergenic
AAGAGATCCTTCAATTCCAG+AGG 0.646564 1_2:+67381057 Msa0086650:CDS
AGGTGAAATTCTCCGGCGAG+GGG 0.653189 1_2:+67380851 Msa0086650:CDS
GAATCAGAAGAAAGAAACCA+AGG 0.653413 1_2:+67380621 Msa0086650:CDS
TAAGGTGAAATTCTCCGGCG+AGG 0.664840 1_2:+67380849 Msa0086650:CDS
ATGAGGAACAGTGATGTTGG+AGG 0.666650 1_2:-67380236 None:intergenic
TTTATGTTAAGGTTTCGAAG+AGG 0.679040 1_2:+67380818 Msa0086650:CDS
AATTCGGAATCAAGGAACAG+AGG 0.681760 1_2:+67380732 Msa0086650:CDS
AAAACTCCACAACACAACAA+AGG 0.684017 1_2:-67381494 None:intergenic
TTAGTAATAGGTTTGTGTGG+TGG 0.725766 1_2:+67381389 Msa0086650:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATGATTATTTTTGAA+AGG + chr1_2:67381129-67381148 Msa0086650:intron 10.0%
!!! TAAATATGATTATTTTTGAA+AGG + chr1_2:67381129-67381148 Msa0086650:intron 10.0%
!! AAATGAAATGAAATTAGATT+AGG + chr1_2:67381358-67381377 Msa0086650:three_prime_UTR 15.0%
!! AATGAAATGAAATTAGATTA+GGG + chr1_2:67381359-67381378 Msa0086650:three_prime_UTR 15.0%
!! AAATGAAATGAAATTAGATT+AGG + chr1_2:67381358-67381377 Msa0086650:three_prime_UTR 15.0%
!! AATGAAATGAAATTAGATTA+GGG + chr1_2:67381359-67381378 Msa0086650:three_prime_UTR 15.0%
!!! ATAATTTTCAGATTCTTCAA+TGG + chr1_2:67381199-67381218 Msa0086650:intron 20.0%
!! ATGAAATGAAATTAGATTAG+GGG + chr1_2:67381360-67381379 Msa0086650:three_prime_UTR 20.0%
!!! AATCTATTTTCAGTTGATAT+GGG + chr1_2:67381440-67381459 Msa0086650:three_prime_UTR 20.0%
!!! ATAATTTTCAGATTCTTCAA+TGG + chr1_2:67381199-67381218 Msa0086650:intron 20.0%
!! ATGAAATGAAATTAGATTAG+GGG + chr1_2:67381360-67381379 Msa0086650:three_prime_UTR 20.0%
!!! AATCTATTTTCAGTTGATAT+GGG + chr1_2:67381440-67381459 Msa0086650:three_prime_UTR 20.0%
!!! ATAAGAAGTGTTGTTTTTTG+AGG - chr1_2:67380424-67380443 None:intergenic 25.0%
!! TTCAACAAGAAATTCTTTTG+AGG + chr1_2:67381250-67381269 Msa0086650:CDS 25.0%
!!! GAATCTATTTTCAGTTGATA+TGG + chr1_2:67381439-67381458 Msa0086650:three_prime_UTR 25.0%
!!! ATAAGAAGTGTTGTTTTTTG+AGG - chr1_2:67380424-67380443 None:intergenic 25.0%
!! TTCAACAAGAAATTCTTTTG+AGG + chr1_2:67381250-67381269 Msa0086650:CDS 25.0%
!!! GAATCTATTTTCAGTTGATA+TGG + chr1_2:67381439-67381458 Msa0086650:three_prime_UTR 25.0%
ATAGAGAGAGAATAGTGTTT+AGG - chr1_2:67380151-67380170 None:intergenic 30.0%
! TTTGTTGTCGAAATCATTCA+CGG - chr1_2:67380323-67380342 None:intergenic 30.0%
! GTTTTCTGTTTTGTGAGTTT+TGG - chr1_2:67380371-67380390 None:intergenic 30.0%
!! ATTAGTTTCAGTTTTCTCGT+AGG - chr1_2:67380398-67380417 None:intergenic 30.0%
!!! AGCACTTTTCTTTTTGAGAT+AGG - chr1_2:67380460-67380479 None:intergenic 30.0%
!! AAGGTAAAGATTCTGAAACT+TGG - chr1_2:67380538-67380557 None:intergenic 30.0%
TAGTTTCACAGAAAAAACCT+TGG - chr1_2:67380641-67380660 None:intergenic 30.0%
GATTAAGCCTCTTTATGTTA+AGG + chr1_2:67380807-67380826 Msa0086650:CDS 30.0%
TTCGAAACCTTAACATAAAG+AGG - chr1_2:67380817-67380836 None:intergenic 30.0%
TTTATGTTAAGGTTTCGAAG+AGG + chr1_2:67380818-67380837 Msa0086650:CDS 30.0%
!!! AATTTTACCTCTGGAATTGA+AGG - chr1_2:67381067-67381086 None:intergenic 30.0%
! TGTGAAACAAATTTTACCTC+TGG - chr1_2:67381076-67381095 None:intergenic 30.0%
TTTCATTACTCTTTCTATGC+TGG - chr1_2:67381314-67381333 None:intergenic 30.0%
TGATTAGTAATAGGTTTGTG+TGG + chr1_2:67381386-67381405 Msa0086650:three_prime_UTR 30.0%
!!! GTTGATATGGGATCTTTTTT+TGG + chr1_2:67381452-67381471 Msa0086650:three_prime_UTR 30.0%
ATAGAGAGAGAATAGTGTTT+AGG - chr1_2:67380151-67380170 None:intergenic 30.0%
! TTTGTTGTCGAAATCATTCA+CGG - chr1_2:67380323-67380342 None:intergenic 30.0%
! GTTTTCTGTTTTGTGAGTTT+TGG - chr1_2:67380371-67380390 None:intergenic 30.0%
!! ATTAGTTTCAGTTTTCTCGT+AGG - chr1_2:67380398-67380417 None:intergenic 30.0%
!!! AGCACTTTTCTTTTTGAGAT+AGG - chr1_2:67380460-67380479 None:intergenic 30.0%
!! AAGGTAAAGATTCTGAAACT+TGG - chr1_2:67380538-67380557 None:intergenic 30.0%
TAGTTTCACAGAAAAAACCT+TGG - chr1_2:67380641-67380660 None:intergenic 30.0%
GATTAAGCCTCTTTATGTTA+AGG + chr1_2:67380807-67380826 Msa0086650:CDS 30.0%
TTCGAAACCTTAACATAAAG+AGG - chr1_2:67380817-67380836 None:intergenic 30.0%
TTTATGTTAAGGTTTCGAAG+AGG + chr1_2:67380818-67380837 Msa0086650:CDS 30.0%
!!! AATTTTACCTCTGGAATTGA+AGG - chr1_2:67381067-67381086 None:intergenic 30.0%
! TGTGAAACAAATTTTACCTC+TGG - chr1_2:67381076-67381095 None:intergenic 30.0%
TTTCATTACTCTTTCTATGC+TGG - chr1_2:67381314-67381333 None:intergenic 30.0%
TGATTAGTAATAGGTTTGTG+TGG + chr1_2:67381386-67381405 Msa0086650:three_prime_UTR 30.0%
!!! GTTGATATGGGATCTTTTTT+TGG + chr1_2:67381452-67381471 Msa0086650:three_prime_UTR 30.0%
! AGTTTAAAGCATCCATGGAA+TGG - chr1_2:67380186-67380205 None:intergenic 35.0%
CTTTAAACTTCCTCAAGTTC+TGG + chr1_2:67380197-67380216 Msa0086650:CDS 35.0%
!! TCTGTTTCTACAACAAGATG+AGG - chr1_2:67380256-67380275 None:intergenic 35.0%
!!! CTGTTTTGTGAGTTTTGGTT+TGG - chr1_2:67380366-67380385 None:intergenic 35.0%
!!! CTTTTTGAGATAGGTTCGTT+TGG - chr1_2:67380451-67380470 None:intergenic 35.0%
!!! GGTTTTGAAATGGGTTCAAT+TGG - chr1_2:67380484-67380503 None:intergenic 35.0%
!!! GGTGATTGTGGTTTTGAAAT+GGG - chr1_2:67380493-67380512 None:intergenic 35.0%
GCTGATCTTAGAAGTGAAAT+GGG - chr1_2:67380514-67380533 None:intergenic 35.0%
TGCTGATCTTAGAAGTGAAA+TGG - chr1_2:67380515-67380534 None:intergenic 35.0%
! AGTTCTTCTCTGTTTTCTGA+AGG - chr1_2:67380557-67380576 None:intergenic 35.0%
TTCAGAAAACAGAGAAGAAC+TGG + chr1_2:67380556-67380575 Msa0086650:CDS 35.0%
GAATCAGAAGAAAGAAACCA+AGG + chr1_2:67380621-67380640 Msa0086650:CDS 35.0%
! GAAACTTTGGTGGCAAAATT+CGG + chr1_2:67380716-67380735 Msa0086650:CDS 35.0%
!! TTTGAAACTCGCTCTGTTTT+GGG - chr1_2:67380760-67380779 None:intergenic 35.0%
GATTCTTCAATGGATGTTGT+TGG + chr1_2:67381209-67381228 Msa0086650:intron 35.0%
!! GATGTCTTTCTTGATGATGT+TGG + chr1_2:67381282-67381301 Msa0086650:exon 35.0%
TAGGGGTGATGATTAGTAAT+AGG + chr1_2:67381377-67381396 Msa0086650:three_prime_UTR 35.0%
TTAGTAATAGGTTTGTGTGG+TGG + chr1_2:67381389-67381408 Msa0086650:three_prime_UTR 35.0%
AAAACTCCACAACACAACAA+AGG - chr1_2:67381497-67381516 None:intergenic 35.0%
! AGTTTAAAGCATCCATGGAA+TGG - chr1_2:67380186-67380205 None:intergenic 35.0%
CTTTAAACTTCCTCAAGTTC+TGG + chr1_2:67380197-67380216 Msa0086650:CDS 35.0%
!! TCTGTTTCTACAACAAGATG+AGG - chr1_2:67380256-67380275 None:intergenic 35.0%
!!! CTGTTTTGTGAGTTTTGGTT+TGG - chr1_2:67380366-67380385 None:intergenic 35.0%
!!! CTTTTTGAGATAGGTTCGTT+TGG - chr1_2:67380451-67380470 None:intergenic 35.0%
!!! GGTTTTGAAATGGGTTCAAT+TGG - chr1_2:67380484-67380503 None:intergenic 35.0%
!!! GGTGATTGTGGTTTTGAAAT+GGG - chr1_2:67380493-67380512 None:intergenic 35.0%
GCTGATCTTAGAAGTGAAAT+GGG - chr1_2:67380514-67380533 None:intergenic 35.0%
TGCTGATCTTAGAAGTGAAA+TGG - chr1_2:67380515-67380534 None:intergenic 35.0%
! AGTTCTTCTCTGTTTTCTGA+AGG - chr1_2:67380557-67380576 None:intergenic 35.0%
TTCAGAAAACAGAGAAGAAC+TGG + chr1_2:67380556-67380575 Msa0086650:CDS 35.0%
GAATCAGAAGAAAGAAACCA+AGG + chr1_2:67380621-67380640 Msa0086650:CDS 35.0%
! GAAACTTTGGTGGCAAAATT+CGG + chr1_2:67380716-67380735 Msa0086650:CDS 35.0%
!! TTTGAAACTCGCTCTGTTTT+GGG - chr1_2:67380760-67380779 None:intergenic 35.0%
GATTCTTCAATGGATGTTGT+TGG + chr1_2:67381209-67381228 Msa0086650:intron 35.0%
!! GATGTCTTTCTTGATGATGT+TGG + chr1_2:67381282-67381301 Msa0086650:exon 35.0%
TAGGGGTGATGATTAGTAAT+AGG + chr1_2:67381377-67381396 Msa0086650:three_prime_UTR 35.0%
TTAGTAATAGGTTTGTGTGG+TGG + chr1_2:67381389-67381408 Msa0086650:three_prime_UTR 35.0%
AAAACTCCACAACACAACAA+AGG - chr1_2:67381497-67381516 None:intergenic 35.0%
CTCTTAACTCTTCCATTCCA+TGG + chr1_2:67380171-67380190 Msa0086650:exon 40.0%
! GAGGAAGTTTAAAGCATCCA+TGG - chr1_2:67380191-67380210 None:intergenic 40.0%
TGTTGTTCTTCCAGAACTTG+AGG - chr1_2:67380210-67380229 None:intergenic 40.0%
AAGATGAGGAACAGTGATGT+TGG - chr1_2:67380242-67380261 None:intergenic 40.0%
!!! GAGTTTTGGTTTGGACATGT+GGG - chr1_2:67380357-67380376 None:intergenic 40.0%
!!! TGAGTTTTGGTTTGGACATG+TGG - chr1_2:67380358-67380377 None:intergenic 40.0%
!!! GGGTGATTGTGGTTTTGAAA+TGG - chr1_2:67380494-67380513 None:intergenic 40.0%
AGAAGTGAAATGGGTGATTG+TGG - chr1_2:67380505-67380524 None:intergenic 40.0%
CTGTTCTCTCTACTAAGCAT+TGG - chr1_2:67380691-67380710 None:intergenic 40.0%
GAGAACAGCACAAGAAACTT+TGG + chr1_2:67380703-67380722 Msa0086650:CDS 40.0%
AACAGCACAAGAAACTTTGG+TGG + chr1_2:67380706-67380725 Msa0086650:CDS 40.0%
AATTCGGAATCAAGGAACAG+AGG + chr1_2:67380732-67380751 Msa0086650:CDS 40.0%
!!! CTTTGAAACTCGCTCTGTTT+TGG - chr1_2:67380761-67380780 None:intergenic 40.0%
CAAAACAGAGCGAGTTTCAA+AGG + chr1_2:67380759-67380778 Msa0086650:CDS 40.0%
GTTAAGGTTTCGAAGAGGTA+TGG + chr1_2:67380823-67380842 Msa0086650:CDS 40.0%
! TTCGAAGAGGTATGGTGATA+AGG + chr1_2:67380831-67380850 Msa0086650:CDS 40.0%
GGTGATAAGGTGAAATTCTC+CGG + chr1_2:67380844-67380863 Msa0086650:CDS 40.0%
! AAAGTGGTGACGAAGCATTT+GGG + chr1_2:67380925-67380944 Msa0086650:CDS 40.0%
AAGAGATCCTTCAATTCCAG+AGG + chr1_2:67381057-67381076 Msa0086650:CDS 40.0%
TCTTCAATGGATGTTGTTGG+TGG + chr1_2:67381212-67381231 Msa0086650:CDS 40.0%
! ACTCTTCCTTTGTTGTGTTG+TGG + chr1_2:67381488-67381507 Msa0086650:three_prime_UTR 40.0%
CTCTTAACTCTTCCATTCCA+TGG + chr1_2:67380171-67380190 Msa0086650:exon 40.0%
! GAGGAAGTTTAAAGCATCCA+TGG - chr1_2:67380191-67380210 None:intergenic 40.0%
TGTTGTTCTTCCAGAACTTG+AGG - chr1_2:67380210-67380229 None:intergenic 40.0%
AAGATGAGGAACAGTGATGT+TGG - chr1_2:67380242-67380261 None:intergenic 40.0%
!!! GAGTTTTGGTTTGGACATGT+GGG - chr1_2:67380357-67380376 None:intergenic 40.0%
!!! TGAGTTTTGGTTTGGACATG+TGG - chr1_2:67380358-67380377 None:intergenic 40.0%
!!! GGGTGATTGTGGTTTTGAAA+TGG - chr1_2:67380494-67380513 None:intergenic 40.0%
AGAAGTGAAATGGGTGATTG+TGG - chr1_2:67380505-67380524 None:intergenic 40.0%
CTGTTCTCTCTACTAAGCAT+TGG - chr1_2:67380691-67380710 None:intergenic 40.0%
GAGAACAGCACAAGAAACTT+TGG + chr1_2:67380703-67380722 Msa0086650:CDS 40.0%
AACAGCACAAGAAACTTTGG+TGG + chr1_2:67380706-67380725 Msa0086650:CDS 40.0%
AATTCGGAATCAAGGAACAG+AGG + chr1_2:67380732-67380751 Msa0086650:CDS 40.0%
!!! CTTTGAAACTCGCTCTGTTT+TGG - chr1_2:67380761-67380780 None:intergenic 40.0%
CAAAACAGAGCGAGTTTCAA+AGG + chr1_2:67380759-67380778 Msa0086650:CDS 40.0%
GTTAAGGTTTCGAAGAGGTA+TGG + chr1_2:67380823-67380842 Msa0086650:CDS 40.0%
! TTCGAAGAGGTATGGTGATA+AGG + chr1_2:67380831-67380850 Msa0086650:CDS 40.0%
GGTGATAAGGTGAAATTCTC+CGG + chr1_2:67380844-67380863 Msa0086650:CDS 40.0%
! AAAGTGGTGACGAAGCATTT+GGG + chr1_2:67380925-67380944 Msa0086650:CDS 40.0%
AAGAGATCCTTCAATTCCAG+AGG + chr1_2:67381057-67381076 Msa0086650:CDS 40.0%
TCTTCAATGGATGTTGTTGG+TGG + chr1_2:67381212-67381231 Msa0086650:CDS 40.0%
! ACTCTTCCTTTGTTGTGTTG+TGG + chr1_2:67381488-67381507 Msa0086650:three_prime_UTR 40.0%
ATGAGGAACAGTGATGTTGG+AGG - chr1_2:67380239-67380258 None:intergenic 45.0%
GGTGGCAAAATTCGGAATCA+AGG + chr1_2:67380724-67380743 Msa0086650:CDS 45.0%
! GAAAGTGGTGACGAAGCATT+TGG + chr1_2:67380924-67380943 Msa0086650:CDS 45.0%
! CGAAGCATTTGGGTAAGAGT+AGG + chr1_2:67380935-67380954 Msa0086650:CDS 45.0%
TTTGGGTAAGAGTAGGTCGT+CGG + chr1_2:67380942-67380961 Msa0086650:CDS 45.0%
!! ATGGATGTTGTTGGTGGTGA+TGG + chr1_2:67381218-67381237 Msa0086650:CDS 45.0%
ATGAGGAACAGTGATGTTGG+AGG - chr1_2:67380239-67380258 None:intergenic 45.0%
GGTGGCAAAATTCGGAATCA+AGG + chr1_2:67380724-67380743 Msa0086650:CDS 45.0%
! GAAAGTGGTGACGAAGCATT+TGG + chr1_2:67380924-67380943 Msa0086650:CDS 45.0%
! CGAAGCATTTGGGTAAGAGT+AGG + chr1_2:67380935-67380954 Msa0086650:CDS 45.0%
TTTGGGTAAGAGTAGGTCGT+CGG + chr1_2:67380942-67380961 Msa0086650:CDS 45.0%
!! ATGGATGTTGTTGGTGGTGA+TGG + chr1_2:67381218-67381237 Msa0086650:CDS 45.0%
TTGGACATGTGGGTCGTCAT+TGG - chr1_2:67380347-67380366 None:intergenic 50.0%
TAAGGTGAAATTCTCCGGCG+AGG + chr1_2:67380849-67380868 Msa0086650:CDS 50.0%
AAGGTGAAATTCTCCGGCGA+GGG + chr1_2:67380850-67380869 Msa0086650:CDS 50.0%
! GGTTGGCTCTTTGAGGAAAG+TGG + chr1_2:67380909-67380928 Msa0086650:CDS 50.0%
TTGGGTAAGAGTAGGTCGTC+GGG + chr1_2:67380943-67380962 Msa0086650:CDS 50.0%
TAAGAGTAGGTCGTCGGGTA+CGG + chr1_2:67380948-67380967 Msa0086650:CDS 50.0%
GTATCATCACTCCTGTTCGC+CGG - chr1_2:67380991-67381010 None:intergenic 50.0%
ACGCTGTTGCAGCAACATGA+TGG + chr1_2:67381009-67381028 Msa0086650:CDS 50.0%
TTGGACATGTGGGTCGTCAT+TGG - chr1_2:67380347-67380366 None:intergenic 50.0%
TAAGGTGAAATTCTCCGGCG+AGG + chr1_2:67380849-67380868 Msa0086650:CDS 50.0%
AAGGTGAAATTCTCCGGCGA+GGG + chr1_2:67380850-67380869 Msa0086650:CDS 50.0%
! GGTTGGCTCTTTGAGGAAAG+TGG + chr1_2:67380909-67380928 Msa0086650:CDS 50.0%
TTGGGTAAGAGTAGGTCGTC+GGG + chr1_2:67380943-67380962 Msa0086650:CDS 50.0%
TAAGAGTAGGTCGTCGGGTA+CGG + chr1_2:67380948-67380967 Msa0086650:CDS 50.0%
GTATCATCACTCCTGTTCGC+CGG - chr1_2:67380991-67381010 None:intergenic 50.0%
ACGCTGTTGCAGCAACATGA+TGG + chr1_2:67381009-67381028 Msa0086650:CDS 50.0%
AGGTGAAATTCTCCGGCGAG+GGG + chr1_2:67380851-67380870 Msa0086650:CDS 55.0%
TGCTTCGCCGTCTTCTTCAC+CGG + chr1_2:67380885-67380904 Msa0086650:CDS 55.0%
TTCCTCAAAGAGCCAACCGC+CGG - chr1_2:67380907-67380926 None:intergenic 55.0%
AGGTGAAATTCTCCGGCGAG+GGG + chr1_2:67380851-67380870 Msa0086650:CDS 55.0%
TGCTTCGCCGTCTTCTTCAC+CGG + chr1_2:67380885-67380904 Msa0086650:CDS 55.0%
TTCCTCAAAGAGCCAACCGC+CGG - chr1_2:67380907-67380926 None:intergenic 55.0%
ATTCTCCGGCGAGGGGATGA+CGG + chr1_2:67380858-67380877 Msa0086650:CDS 60.0%
TTCGCCGTCTTCTTCACCGG+CGG + chr1_2:67380888-67380907 Msa0086650:CDS 60.0%
CCAACCGCCGGTGAAGAAGA+CGG - chr1_2:67380895-67380914 None:intergenic 60.0%
GTTCGCCGGAGAACAAGCTC+CGG - chr1_2:67380977-67380996 None:intergenic 60.0%
! GAGCTTGTTCTCCGGCGAAC+AGG + chr1_2:67380977-67380996 Msa0086650:CDS 60.0%
ATTCTCCGGCGAGGGGATGA+CGG + chr1_2:67380858-67380877 Msa0086650:CDS 60.0%
TTCGCCGTCTTCTTCACCGG+CGG + chr1_2:67380888-67380907 Msa0086650:CDS 60.0%
CCAACCGCCGGTGAAGAAGA+CGG - chr1_2:67380895-67380914 None:intergenic 60.0%
GTTCGCCGGAGAACAAGCTC+CGG - chr1_2:67380977-67380996 None:intergenic 60.0%
! GAGCTTGTTCTCCGGCGAAC+AGG + chr1_2:67380977-67380996 Msa0086650:CDS 60.0%
AGCTACCGTCATCCCCTCGC+CGG - chr1_2:67380866-67380885 None:intergenic 65.0%
CCGTCTTCTTCACCGGCGGT+TGG + chr1_2:67380892-67380911 Msa0086650:CDS 65.0%
! CACCGGCGGTTGGCTCTTTG+AGG + chr1_2:67380902-67380921 Msa0086650:CDS 65.0%
GAGTAGGTCGTCGGGTACGG+TGG + chr1_2:67380951-67380970 Msa0086650:CDS 65.0%
! GGTGGCCGGAGCTTGTTCTC+CGG + chr1_2:67380969-67380988 Msa0086650:CDS 65.0%
AGCTACCGTCATCCCCTCGC+CGG - chr1_2:67380866-67380885 None:intergenic 65.0%
CCGTCTTCTTCACCGGCGGT+TGG + chr1_2:67380892-67380911 Msa0086650:CDS 65.0%
! CACCGGCGGTTGGCTCTTTG+AGG + chr1_2:67380902-67380921 Msa0086650:CDS 65.0%
GAGTAGGTCGTCGGGTACGG+TGG + chr1_2:67380951-67380970 Msa0086650:CDS 65.0%
! GGTGGCCGGAGCTTGTTCTC+CGG + chr1_2:67380969-67380988 Msa0086650:CDS 65.0%
AGGTCGTCGGGTACGGTGGC+CGG + chr1_2:67380955-67380974 Msa0086650:CDS 70.0%
AGGTCGTCGGGTACGGTGGC+CGG + chr1_2:67380955-67380974 Msa0086650:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 67380134 67381609 67380134 ID=Msa0086650;Name=Msa0086650
chr1_2 mRNA 67380134 67381609 67380134 ID=Msa0086650-mRNA-1;Parent=Msa0086650;Name=Msa0086650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=56|1|1|1|1|1|2|326|320
chr1_2 exon 67380134 67381078 67380134 ID=Msa0086650-mRNA-1:exon:22797;Parent=Msa0086650-mRNA-1
chr1_2 exon 67381210 67381609 67381210 ID=Msa0086650-mRNA-1:exon:22798;Parent=Msa0086650-mRNA-1
chr1_2 five_prime_UTR 67380134 67380189 67380134 ID=Msa0086650-mRNA-1:five_prime_utr;Parent=Msa0086650-mRNA-1
chr1_2 CDS 67380190 67381078 67380190 ID=Msa0086650-mRNA-1:cds;Parent=Msa0086650-mRNA-1
chr1_2 CDS 67381210 67381283 67381210 ID=Msa0086650-mRNA-1:cds;Parent=Msa0086650-mRNA-1
chr1_2 three_prime_UTR 67381284 67381609 67381284 ID=Msa0086650-mRNA-1:three_prime_utr;Parent=Msa0086650-mRNA-1
Gene Sequence

>Msa0086650

ATGGATGCTTTAAACTTCCTCAAGTTCTGGAAGAACAACACAACAACCTCCAACATCACTGTTCCTCATCTTGTTGTAGAAACAGACAGCGAATCAGACGAAGATGACTCATTCTTCGACTTAGAACTCTCCGTGAATGATTTCGACAACAAAACCAATGACGACCCACATGTCCAAACCAAAACTCACAAAACAGAAAACATTACCTACGAGAAAACTGAAACTAATGTTCCTCAAAAAACAACACTTCTTATGTCTCCAAACGAACCTATCTCAAAAAGAAAAGTGCTTCCAATTGAACCCATTTCAAAACCACAATCACCCATTTCACTTCTAAGATCAGCACCAAGTTTCAGAATCTTTACCTTCAGAAAACAGAGAAGAACTGGTTCTGAAAAAACAGACGAGTTTAGAAAAACAGAGTGTGAAAAGAATCAGAAGAAAGAAACCAAGGTTTTTTCTGTGAAACTAAATATAGAAGAAGATTTTCATTCTACTCCAATGCTTAGTAGAGAGAACAGCACAAGAAACTTTGGTGGCAAAATTCGGAATCAAGGAACAGAGGAACCCAAAACAGAGCGAGTTTCAAAGGAGATTTTGCAGAAATATTTGAAACTGATTAAGCCTCTTTATGTTAAGGTTTCGAAGAGGTATGGTGATAAGGTGAAATTCTCCGGCGAGGGGATGACGGTAGCTGCTTCGCCGTCTTCTTCACCGGCGGTTGGCTCTTTGAGGAAAGTGGTGACGAAGCATTTGGGTAAGAGTAGGTCGTCGGGTACGGTGGCCGGAGCTTGTTCTCCGGCGAACAGGAGTGATGATACGCTGTTGCAGCAACATGATGGAATTCAAAGTGCTATTCTTCATTGCAAGAGATCCTTCAATTCCAGAGATTCTTCAATGGATGTTGTTGGTGGTGATGGATCAATGTATTCAACAAGAAATTCTTTTGAGGATGAAGTGTGA

Protein sequence

>Msa0086650

MDALNFLKFWKNNTTTSNITVPHLVVETDSESDEDDSFFDLELSVNDFDNKTNDDPHVQTKTHKTENITYEKTETNVPQKTTLLMSPNEPISKRKVLPIEPISKPQSPISLLRSAPSFRIFTFRKQRRTGSEKTDEFRKTECEKNQKKETKVFSVKLNIEEDFHSTPMLSRENSTRNFGGKIRNQGTEEPKTERVSKEILQKYLKLIKPLYVKVSKRYGDKVKFSGEGMTVAASPSSSPAVGSLRKVVTKHLGKSRSSGTVAGACSPANRSDDTLLQQHDGIQSAILHCKRSFNSRDSSMDVVGGDGSMYSTRNSFEDEV*