Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726490 | XP_003613966.1 | 96.591 | 176 | 2 | 1 | 1 | 172 | 1 | 176 | 5.07e-117 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726490 | sp|Q9M015|Y5161_ARATH | 47.170 | 159 | 83 | 1 | 15 | 172 | 8 | 166 | 4.56e-50 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726490 | G7JWQ2 | 96.591 | 176 | 2 | 1 | 1 | 172 | 1 | 176 | 2.42e-117 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0726490 | Msa0766850 | 0.924757 | 4.593933e-90 | -8.615850e-47 |
| Msa0726490 | Msa0846680 | 0.852541 | 4.314847e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726490 | MtrunA17_Chr5g0418311 | 96.591 | 176 | 2 | 1 | 1 | 172 | 1 | 176 | 4.66e-121 | 338 |
| Msa0726490 | MtrunA17_Chr4g0061181 | 63.277 | 177 | 53 | 3 | 1 | 172 | 1 | 170 | 1.37e-74 | 221 |
| Msa0726490 | MtrunA17_Chr7g0243261 | 48.000 | 175 | 77 | 3 | 1 | 171 | 1 | 165 | 1.17e-52 | 165 |
| Msa0726490 | MtrunA17_Chr4g0005561 | 49.068 | 161 | 75 | 2 | 15 | 171 | 8 | 165 | 1.39e-52 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726490 | AT2G03350.1 | 72.159 | 176 | 43 | 2 | 1 | 172 | 1 | 174 | 2.44e-89 | 259 |
| Msa0726490 | AT5G37070.1 | 48.837 | 172 | 80 | 2 | 1 | 171 | 1 | 165 | 1.96e-55 | 172 |
| Msa0726490 | AT3G08890.1 | 48.256 | 172 | 81 | 2 | 1 | 171 | 1 | 165 | 6.66e-53 | 166 |
| Msa0726490 | AT3G08890.2 | 48.256 | 172 | 81 | 2 | 1 | 171 | 1 | 165 | 6.66e-53 | 166 |
| Msa0726490 | AT5G01610.2 | 47.170 | 159 | 83 | 1 | 15 | 172 | 8 | 166 | 4.64e-51 | 161 |
| Msa0726490 | AT5G01610.1 | 47.170 | 159 | 83 | 1 | 15 | 172 | 8 | 166 | 4.64e-51 | 161 |
| Msa0726490 | AT5G16380.1 | 28.125 | 128 | 84 | 3 | 49 | 170 | 19 | 144 | 4.94e-11 | 58.9 |
Find 42 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACAAATCTGATAAGATT+TGG | 0.265998 | 5_1:-27492528 | Msa0726490:CDS |
| GGGAAAGCTTTCAGCAATAG+AGG | 0.361806 | 5_1:-27492605 | Msa0726490:CDS |
| TTACAAATCTGATAAGATTT+GGG | 0.365699 | 5_1:-27492527 | Msa0726490:CDS |
| GAGTCAAAGGTGTACTTACT+AGG | 0.380524 | 5_1:-27492627 | Msa0726490:CDS |
| AGATTGGACTTGGTGATTCA+TGG | 0.388734 | 5_1:-27495602 | Msa0726490:CDS |
| TAGTTTGTTGAAAACCCATT+TGG | 0.430521 | 5_1:+27493600 | None:intergenic |
| TGATACTCTAATAGCATCTC+GGG | 0.437935 | 5_1:+27492456 | None:intergenic |
| AAAGTGGCAAGTTTGAAGAT+TGG | 0.439753 | 5_1:-27495618 | Msa0726490:CDS |
| TTGAACTCTCTGAGGAGATC+TGG | 0.445414 | 5_1:+27492784 | None:intergenic |
| GGTGTATCGTAAGCATCCTT+TGG | 0.469228 | 5_1:+27492478 | None:intergenic |
| TGCATGTGAGGTCAGCTTCA+AGG | 0.469233 | 5_1:-27492677 | Msa0726490:CDS |
| CTGTTGAAGAGAAGGCCAAA+TGG | 0.472733 | 5_1:-27493615 | Msa0726490:CDS |
| GAGAGTTCAATTTACCGCTC+GGG | 0.472924 | 5_1:-27492771 | Msa0726490:CDS |
| CTGATACTCTAATAGCATCT+CGG | 0.477645 | 5_1:+27492455 | None:intergenic |
| TGTTGAAGAGAAGGCCAAAT+GGG | 0.480692 | 5_1:-27493614 | Msa0726490:CDS |
| CTCAAGCACTGTTGAAGAGA+AGG | 0.492131 | 5_1:-27493623 | Msa0726490:CDS |
| AGTAAGTACACCTTTGACTC+GGG | 0.494877 | 5_1:+27492630 | None:intergenic |
| CAACACAAGAACAAGAGAAA+GGG | 0.502224 | 5_1:+27495707 | None:intergenic |
| ACAACACAAGAACAAGAGAA+AGG | 0.502944 | 5_1:+27495706 | None:intergenic |
| GTAGACAATCAGCTTACCCT+TGG | 0.505031 | 5_1:+27492708 | None:intergenic |
| CCCACAGGTAAGCCACAGAA+AGG | 0.506420 | 5_1:-27492811 | Msa0726490:intron |
| AGAGAGTTCAATTTACCGCT+CGG | 0.507282 | 5_1:-27492772 | Msa0726490:CDS |
| GATAAGATTTGGGTTACTGC+TGG | 0.516200 | 5_1:-27492517 | Msa0726490:CDS |
| AGTCAAAGGTGTACTTACTA+GGG | 0.519994 | 5_1:-27492626 | Msa0726490:CDS |
| GCAAGTTTGAAGATTGGACT+TGG | 0.547752 | 5_1:-27495612 | Msa0726490:CDS |
| CGATATGCAACCCGAGTCAA+AGG | 0.562733 | 5_1:-27492640 | Msa0726490:CDS |
| GGAGAAAGCTCTCACTAAAG+TGG | 0.571492 | 5_1:-27495634 | Msa0726490:CDS |
| TAGTAAGTACACCTTTGACT+CGG | 0.573895 | 5_1:+27492629 | None:intergenic |
| CTACTTACCATCTGCATGTG+AGG | 0.574237 | 5_1:-27492689 | Msa0726490:CDS |
| CTGCTGGTGTTAAGAAGTCA+AGG | 0.578489 | 5_1:-27492501 | Msa0726490:CDS |
| GTGACAAGTGTGACAGTAGA+GGG | 0.581696 | 5_1:-27492550 | Msa0726490:CDS |
| CTGCAACTAACAACACAAGA+TGG | 0.591420 | 5_1:-27495655 | Msa0726490:exon |
| AGATCTGGTAAACCTTTCTG+TGG | 0.597603 | 5_1:+27492799 | None:intergenic |
| GGAAAGCTTTCAGCAATAGA+GGG | 0.600700 | 5_1:-27492604 | Msa0726490:CDS |
| AAGCTGACCTCACATGCAGA+TGG | 0.613619 | 5_1:+27492682 | None:intergenic |
| GGTGACAAGTGTGACAGTAG+AGG | 0.615714 | 5_1:-27492551 | Msa0726490:CDS |
| TATGAGTTTGACGAAACCAA+GGG | 0.622312 | 5_1:-27492724 | Msa0726490:CDS |
| TTATGAGTTTGACGAAACCA+AGG | 0.622560 | 5_1:-27492725 | Msa0726490:CDS |
| TGTTAAGAAGTCAAGGCCAA+AGG | 0.647193 | 5_1:-27492494 | Msa0726490:CDS |
| GTCAAAGGTGTACTTACTAG+GGG | 0.651960 | 5_1:-27492625 | Msa0726490:CDS |
| GCGGTAAATTGAACTCTCTG+AGG | 0.669943 | 5_1:+27492776 | None:intergenic |
| GATACTCTAATAGCATCTCG+GGG | 0.705257 | 5_1:+27492457 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGGGTATATTAAAAAAA+TGG | - | chr5_1:27493459-27493478 | Msa0726490:intron | 15.0% |
| !! | GCTAAATATATATTGATCTA+AGG | + | chr5_1:27493198-27493217 | None:intergenic | 20.0% |
| !!! | TTTTGATGTTTCTTTAGTTT+AGG | - | chr5_1:27493358-27493377 | Msa0726490:intron | 20.0% |
| !!! | TTTGATGTTTCTTTAGTTTA+GGG | - | chr5_1:27493359-27493378 | Msa0726490:intron | 20.0% |
| !!! | TATTAAAAAAATGGCCTTTT+TGG | - | chr5_1:27493468-27493487 | Msa0726490:intron | 20.0% |
| !!! | TTTTTTCCTTTCTAAATCAT+AGG | - | chr5_1:27493557-27493576 | Msa0726490:intron | 20.0% |
| !! | AATAAAAACAGAGATATTAG+AGG | + | chr5_1:27494062-27494081 | None:intergenic | 20.0% |
| !!! | AATATCTCTGTTTTTATTCT+TGG | - | chr5_1:27494064-27494083 | Msa0726490:intron | 20.0% |
| !! | AATATATAGGGAAAAATAGA+GGG | + | chr5_1:27494102-27494121 | None:intergenic | 20.0% |
| !! | AAATATATAGGGAAAAATAG+AGG | + | chr5_1:27494103-27494122 | None:intergenic | 20.0% |
| !! | AGAATTGAGAGAAATATATA+GGG | + | chr5_1:27494114-27494133 | None:intergenic | 20.0% |
| !! | TAGAATTGAGAGAAATATAT+AGG | + | chr5_1:27494115-27494134 | None:intergenic | 20.0% |
| !! | TTCTCAATATTACTGATAAA+AGG | + | chr5_1:27494404-27494423 | None:intergenic | 20.0% |
| !! | ACATGAAAAACTTATTATAG+CGG | + | chr5_1:27494779-27494798 | None:intergenic | 20.0% |
| !! | TTACAAATCTGATAAGATTT+GGG | - | chr5_1:27495640-27495659 | Msa0726490:exon | 20.0% |
| !! | ATTCAAATCTTTGAGGAATA+GGG | + | chr5_1:27492870-27492889 | None:intergenic | 25.0% |
| !! | TATTCAAATCTTTGAGGAAT+AGG | + | chr5_1:27492871-27492890 | None:intergenic | 25.0% |
| ! | TATTCCTCAAAGATTTGAAT+AGG | - | chr5_1:27492870-27492889 | Msa0726490:intron | 25.0% |
| !! | AAATTTGATTCCTCTGAAAA+TGG | + | chr5_1:27492917-27492936 | None:intergenic | 25.0% |
| ! | ATTTCGCAAAACAATTCATT+CGG | - | chr5_1:27493237-27493256 | Msa0726490:intron | 25.0% |
| ! | TTCCATAAATGAATATGCAA+TGG | - | chr5_1:27493390-27493409 | Msa0726490:intron | 25.0% |
| !!! | GTAGATAATTTATTTTGTCC+AGG | - | chr5_1:27493600-27493619 | Msa0726490:CDS | 25.0% |
| ! | TAAACAATCAATCACATGAT+CGG | + | chr5_1:27493745-27493764 | None:intergenic | 25.0% |
| ! | TTTGATTGATGCAAAATTCT+TGG | + | chr5_1:27494257-27494276 | None:intergenic | 25.0% |
| !! | TTTTGTACAGAGTTGAAAAT+TGG | - | chr5_1:27494303-27494322 | Msa0726490:intron | 25.0% |
| !! | TTTTACTACGCTTTATGATT+CGG | + | chr5_1:27494434-27494453 | None:intergenic | 25.0% |
| !!! | ACAATGTTTTTGCTGATATA+AGG | - | chr5_1:27494501-27494520 | Msa0726490:intron | 25.0% |
| ! | TTTCAACAAACTAAAAGGTA+CGG | - | chr5_1:27494577-27494596 | Msa0726490:intron | 25.0% |
| ! | CATGAAAAACTTATTATAGC+GGG | + | chr5_1:27494778-27494797 | None:intergenic | 25.0% |
| !!! | GAAATAGCAAATTTTAACTC+AGG | + | chr5_1:27495091-27495110 | None:intergenic | 25.0% |
| ! | CAAGACAAGTATTATTTCAA+TGG | - | chr5_1:27495259-27495278 | Msa0726490:intron | 25.0% |
| !! | TCATAACAGATTATGTTTTG+AGG | + | chr5_1:27495428-27495447 | None:intergenic | 25.0% |
| ! | TGAAAACAAAAGTTCTTGTA+TGG | - | chr5_1:27495588-27495607 | Msa0726490:CDS | 25.0% |
| ! | GAAAACAAAAGTTCTTGTAT+GGG | - | chr5_1:27495589-27495608 | Msa0726490:CDS | 25.0% |
| ! | GTTACAAATCTGATAAGATT+TGG | - | chr5_1:27495639-27495658 | Msa0726490:CDS | 25.0% |
| !!! | GTTCTTTTTTCCCTTTAATG+TGG | - | chr5_1:27492704-27492723 | Msa0726490:CDS | 30.0% |
| ! | TTTGAAACAACCTTGGATTT+GGG | - | chr5_1:27492813-27492832 | Msa0726490:intron | 30.0% |
| ATCTCCTATTCAAATCTTTG+AGG | + | chr5_1:27492877-27492896 | None:intergenic | 30.0% | |
| TGATTCCTCTAAACCAATTT+GGG | + | chr5_1:27493040-27493059 | None:intergenic | 30.0% | |
| TTGATTCCTCTAAACCAATT+TGG | + | chr5_1:27493041-27493060 | None:intergenic | 30.0% | |
| AAACAAGCTTAGTATGTGTT+TGG | + | chr5_1:27493286-27493305 | None:intergenic | 30.0% | |
| !!! | ACATACTAAGCTTGTTTTAG+TGG | - | chr5_1:27493289-27493308 | Msa0726490:intron | 30.0% |
| !! | TTCTGTTTTGGATGTGAAAT+TGG | - | chr5_1:27493325-27493344 | Msa0726490:intron | 30.0% |
| !! | TCTGTTTTGGATGTGAAATT+GGG | - | chr5_1:27493326-27493345 | Msa0726490:intron | 30.0% |
| GTCCATTGCATATTCATTTA+TGG | + | chr5_1:27493395-27493414 | None:intergenic | 30.0% | |
| ! | TCTGAAAGATCCAAATTTTC+AGG | + | chr5_1:27493512-27493531 | None:intergenic | 30.0% |
| GTTGTTCCTATGATTTAGAA+AGG | + | chr5_1:27493566-27493585 | None:intergenic | 30.0% | |
| !! | AATGAATGAAGTCATTTTCC+TGG | + | chr5_1:27493621-27493640 | None:intergenic | 30.0% |
| AATTTCATCGAGAGATTACA+AGG | - | chr5_1:27493660-27493679 | Msa0726490:intron | 30.0% | |
| ATTTCATCGAGAGATTACAA+GGG | - | chr5_1:27493661-27493680 | Msa0726490:intron | 30.0% | |
| !!! | TTGTTTGTTTTGAAACTGCA+GGG | + | chr5_1:27493696-27493715 | None:intergenic | 30.0% |
| !!! | ATTGTTTGTTTTGAAACTGC+AGG | + | chr5_1:27493697-27493716 | None:intergenic | 30.0% |
| TCCATGAAGTTACTTCTAAA+TGG | - | chr5_1:27493777-27493796 | Msa0726490:intron | 30.0% | |
| CAAAAAACAGAGAAAACAGA+GGG | + | chr5_1:27493990-27494009 | None:intergenic | 30.0% | |
| AGATATTAGAGGAAAAACAG+AGG | + | chr5_1:27494051-27494070 | None:intergenic | 30.0% | |
| !! | ATTTGTTGTCTACTACTCTA+TGG | - | chr5_1:27494356-27494375 | Msa0726490:intron | 30.0% |
| TAAAAGGCTGATAATTCACT+TGG | + | chr5_1:27494388-27494407 | None:intergenic | 30.0% | |
| !! | TAGTTTGTTGAAAACCCATT+TGG | + | chr5_1:27494570-27494589 | None:intergenic | 30.0% |
| ! | TGGGTTTTCAACAAACTAAA+AGG | - | chr5_1:27494572-27494591 | Msa0726490:intron | 30.0% |
| AGCAGTCTATTTGAATCAAT+TGG | + | chr5_1:27494663-27494682 | None:intergenic | 30.0% | |
| AAGTATCATCATGCTAAACT+AGG | - | chr5_1:27494683-27494702 | Msa0726490:intron | 30.0% | |
| AAGTATCATCATGCTAAACT+AGG | - | chr5_1:27494683-27494702 | Msa0726490:intron | 30.0% | |
| ! | AAAAGTTCTTGTATGGGTTA+AGG | - | chr5_1:27495595-27495614 | Msa0726490:CDS | 30.0% |
| AAAGTGGCAAGTTTGAAGAT+TGG | - | chr5_1:27492549-27492568 | Msa0726490:CDS | 35.0% | |
| !!! | TCCCTTTAATGTGGCTTTTT+TGG | - | chr5_1:27492713-27492732 | Msa0726490:CDS | 35.0% |
| CCCAAAAAAGCCACATTAAA+GGG | + | chr5_1:27492717-27492736 | None:intergenic | 35.0% | |
| !!! | CCCTTTAATGTGGCTTTTTT+GGG | - | chr5_1:27492714-27492733 | Msa0726490:CDS | 35.0% |
| ACCCAAAAAAGCCACATTAA+AGG | + | chr5_1:27492718-27492737 | None:intergenic | 35.0% | |
| !! | TGTTAGTTTGACCCTTTTCA+TGG | - | chr5_1:27492738-27492757 | Msa0726490:CDS | 35.0% |
| !! | GTTAGTTTGACCCTTTTCAT+GGG | - | chr5_1:27492739-27492758 | Msa0726490:CDS | 35.0% |
| ATGGAAACTTCCCATGAAAA+GGG | + | chr5_1:27492752-27492771 | None:intergenic | 35.0% | |
| AATGGAAACTTCCCATGAAA+AGG | + | chr5_1:27492753-27492772 | None:intergenic | 35.0% | |
| TTTCATGGGAAGTTTCCATT+TGG | - | chr5_1:27492753-27492772 | Msa0726490:CDS | 35.0% | |
| TTCATGGGAAGTTTCCATTT+GGG | - | chr5_1:27492754-27492773 | Msa0726490:CDS | 35.0% | |
| ! | TTGCTTGTTTGAAACAACCT+TGG | - | chr5_1:27492806-27492825 | Msa0726490:CDS | 35.0% |
| ! | GTTTGAAACAACCTTGGATT+TGG | - | chr5_1:27492812-27492831 | Msa0726490:intron | 35.0% |
| ! | GTGTTTGATTCCATTTTCAG+AGG | - | chr5_1:27492904-27492923 | Msa0726490:intron | 35.0% |
| TTAGTATGTGTTTGGTTGTG+TGG | + | chr5_1:27493278-27493297 | None:intergenic | 35.0% | |
| ! | TCTCATGGAATGTTCTGTTT+TGG | - | chr5_1:27493313-27493332 | Msa0726490:intron | 35.0% |
| TTCAACACAGACAACCAAAA+AGG | + | chr5_1:27493485-27493504 | None:intergenic | 35.0% | |
| !! | TTTTGGTTGTCTGTGTTGAA+TGG | - | chr5_1:27493485-27493504 | Msa0726490:intron | 35.0% |
| GTTGAATGGACCTGAAAATT+TGG | - | chr5_1:27493499-27493518 | Msa0726490:intron | 35.0% | |
| !!! | TGTTTGTTTTGAAACTGCAG+GGG | + | chr5_1:27493695-27493714 | None:intergenic | 35.0% |
| GCCATTTAGAAGTAACTTCA+TGG | + | chr5_1:27493781-27493800 | None:intergenic | 35.0% | |
| ATATGACATGTAGAGGATCT+TGG | + | chr5_1:27493803-27493822 | None:intergenic | 35.0% | |
| AAGCTACATATGACATGTAG+AGG | + | chr5_1:27493810-27493829 | None:intergenic | 35.0% | |
| GTGTCTATGATATACAAGCA+AGG | - | chr5_1:27493838-27493857 | Msa0726490:intron | 35.0% | |
| GGAAAATGGCAAAAAAACAG+AGG | + | chr5_1:27493969-27493988 | None:intergenic | 35.0% | |
| GCAAAAAACAGAGAAAACAG+AGG | + | chr5_1:27493991-27494010 | None:intergenic | 35.0% | |
| CAATAAAACAGAGGAAACAG+AGG | + | chr5_1:27494021-27494040 | None:intergenic | 35.0% | |
| !! | GTTTCCTCTGTTTTATTGCT+TGG | - | chr5_1:27494023-27494042 | Msa0726490:intron | 35.0% |
| GAAAAATAGAGGGAAAACAG+AGG | + | chr5_1:27494092-27494111 | None:intergenic | 35.0% | |
| CACTTGTATACAATGTAGTC+AGG | + | chr5_1:27494224-27494243 | None:intergenic | 35.0% | |
| AGTAACACTAACACCAAACA+GGG | + | chr5_1:27494481-27494500 | None:intergenic | 35.0% | |
| TAGTAACACTAACACCAAAC+AGG | + | chr5_1:27494482-27494501 | None:intergenic | 35.0% | |
| GAAAGAATGCATAAACTCAC+TGG | + | chr5_1:27494625-27494644 | None:intergenic | 35.0% | |
| ATTTGAATGTGTCAGCGAAA+GGG | + | chr5_1:27494826-27494845 | None:intergenic | 35.0% | |
| TATTTGAATGTGTCAGCGAA+AGG | + | chr5_1:27494827-27494846 | None:intergenic | 35.0% | |
| CACGAAAAACTTATTATCGC+AGG | + | chr5_1:27494949-27494968 | None:intergenic | 35.0% | |
| ! | ATATAAGAGAAAGTGTGTCG+GGG | + | chr5_1:27495003-27495022 | None:intergenic | 35.0% |
| ! | CATATAAGAGAAAGTGTGTC+GGG | + | chr5_1:27495004-27495023 | None:intergenic | 35.0% |
| ! | GCATATAAGAGAAAGTGTGT+CGG | + | chr5_1:27495005-27495024 | None:intergenic | 35.0% |
| !!! | CAAATTTTAACTCAGGTGCA+TGG | + | chr5_1:27495084-27495103 | None:intergenic | 35.0% |
| TTTAGTCCTTGAAATTGCGA+GGG | + | chr5_1:27495142-27495161 | None:intergenic | 35.0% | |
| ! | TTTTAGTCCTTGAAATTGCG+AGG | + | chr5_1:27495143-27495162 | None:intergenic | 35.0% |
| TTATGAGTTTGACGAAACCA+AGG | - | chr5_1:27495442-27495461 | Msa0726490:intron | 35.0% | |
| TATGAGTTTGACGAAACCAA+GGG | - | chr5_1:27495443-27495462 | Msa0726490:intron | 35.0% | |
| TAGTAAGTACACCTTTGACT+CGG | + | chr5_1:27495541-27495560 | None:intergenic | 35.0% | |
| ! | AGTCAAAGGTGTACTTACTA+GGG | - | chr5_1:27495541-27495560 | Msa0726490:intron | 35.0% |
| CTGCAACTAACAACACAAGA+TGG | - | chr5_1:27492512-27492531 | Msa0726490:CDS | 40.0% | |
| GCAAGTTTGAAGATTGGACT+TGG | - | chr5_1:27492555-27492574 | Msa0726490:intron | 40.0% | |
| !! | AGATTGGACTTGGTGATTCA+TGG | - | chr5_1:27492565-27492584 | Msa0726490:intron | 40.0% |
| TCATGGGAAGTTTCCATTTG+GGG | - | chr5_1:27492755-27492774 | Msa0726490:CDS | 40.0% | |
| TAGATCTCTCAAACCCCAAA+TGG | + | chr5_1:27492771-27492790 | None:intergenic | 40.0% | |
| TTGGGGTTTGAGAGATCTAA+AGG | - | chr5_1:27492772-27492791 | Msa0726490:CDS | 40.0% | |
| GGTTTGAGAGATCTAAAGGA+AGG | - | chr5_1:27492776-27492795 | Msa0726490:CDS | 40.0% | |
| AAACAACCTTGGATTTGGGA+TGG | - | chr5_1:27492817-27492836 | Msa0726490:intron | 40.0% | |
| TGAAGAAGCTAAATTGTCCC+TGG | - | chr5_1:27492946-27492965 | Msa0726490:intron | 40.0% | |
| !! | ATAGTATTGACTTGGGACCT+GGG | + | chr5_1:27493009-27493028 | None:intergenic | 40.0% |
| !! | TGGCCTGATAGTATTGACTT+GGG | + | chr5_1:27493016-27493035 | None:intergenic | 40.0% |
| !! | TTGGCCTGATAGTATTGACT+TGG | + | chr5_1:27493017-27493036 | None:intergenic | 40.0% |
| TCCTCTAAACCAATTTGGGT+TGG | + | chr5_1:27493036-27493055 | None:intergenic | 40.0% | |
| ! | GATTGATTCTGACTTGAAGC+TGG | - | chr5_1:27493137-27493156 | Msa0726490:intron | 40.0% |
| !!! | GCTTGTTTTAGTGGTTCTCA+TGG | - | chr5_1:27493298-27493317 | Msa0726490:intron | 40.0% |
| TGGATGTGAAATTGGGTATC+TGG | - | chr5_1:27493333-27493352 | Msa0726490:intron | 40.0% | |
| GATATACAAGCAAGGTAGTC+AGG | - | chr5_1:27493846-27493865 | Msa0726490:intron | 40.0% | |
| CAGAGAAAACAGAGGGAAAA+TGG | + | chr5_1:27493983-27494002 | None:intergenic | 40.0% | |
| CAGAGGAAACAGAGGAAAAA+CGG | + | chr5_1:27494013-27494032 | None:intergenic | 40.0% | |
| GGAACCAAGCAATAAAACAG+AGG | + | chr5_1:27494030-27494049 | None:intergenic | 40.0% | |
| TAAACATGAGGGACGTAACA+CGG | + | chr5_1:27494166-27494185 | None:intergenic | 40.0% | |
| TGTTGAAGAGAAGGCCAAAT+GGG | - | chr5_1:27494553-27494572 | Msa0726490:intron | 40.0% | |
| !!! | GGATGTGTTTTAACCCTAGA+TGG | - | chr5_1:27494598-27494617 | Msa0726490:intron | 40.0% |
| TAAACTCACTGGACCATCTA+GGG | + | chr5_1:27494614-27494633 | None:intergenic | 40.0% | |
| ATAAACTCACTGGACCATCT+AGG | + | chr5_1:27494615-27494634 | None:intergenic | 40.0% | |
| ! | GCAGGTTGTCTAAAATGCAA+AGG | + | chr5_1:27494931-27494950 | None:intergenic | 40.0% |
| TAGCGTACCATAAGTTCCAA+CGG | - | chr5_1:27495198-27495217 | Msa0726490:intron | 40.0% | |
| AGATCTGGTAAACCTTTCTG+TGG | + | chr5_1:27495371-27495390 | None:intergenic | 40.0% | |
| AGAGAGTTCAATTTACCGCT+CGG | - | chr5_1:27495395-27495414 | Msa0726490:intron | 40.0% | |
| AGTAAGTACACCTTTGACTC+GGG | + | chr5_1:27495540-27495559 | None:intergenic | 40.0% | |
| ! | GAGTCAAAGGTGTACTTACT+AGG | - | chr5_1:27495540-27495559 | Msa0726490:intron | 40.0% |
| ! | GTCAAAGGTGTACTTACTAG+GGG | - | chr5_1:27495542-27495561 | Msa0726490:intron | 40.0% |
| GGAAAGCTTTCAGCAATAGA+GGG | - | chr5_1:27495563-27495582 | Msa0726490:CDS | 40.0% | |
| ! | GATAAGATTTGGGTTACTGC+TGG | - | chr5_1:27495650-27495669 | Msa0726490:exon | 40.0% |
| TGTTAAGAAGTCAAGGCCAA+AGG | - | chr5_1:27495673-27495692 | Msa0726490:five_prime_UTR | 40.0% | |
| GGAGAAAGCTCTCACTAAAG+TGG | - | chr5_1:27492533-27492552 | Msa0726490:CDS | 45.0% | |
| CAAGTACCATCCCAAATCCA+AGG | + | chr5_1:27492826-27492845 | None:intergenic | 45.0% | |
| ! | CTTGGATTTGGGATGGTACT+TGG | - | chr5_1:27492824-27492843 | Msa0726490:intron | 45.0% |
| !! | GATAGTATTGACTTGGGACC+TGG | + | chr5_1:27493010-27493029 | None:intergenic | 45.0% |
| GGTCCCAAGTCAATACTATC+AGG | - | chr5_1:27493010-27493029 | Msa0726490:intron | 45.0% | |
| ACTATCAGGCCAACCCAAAT+TGG | - | chr5_1:27493024-27493043 | Msa0726490:intron | 45.0% | |
| ! | GCCAACCCAAATTGGTTTAG+AGG | - | chr5_1:27493032-27493051 | Msa0726490:intron | 45.0% |
| GGTTCGTAAGTAGGATCGAT+AGG | + | chr5_1:27494145-27494164 | None:intergenic | 45.0% | |
| ACGTAACACGGTTCGTAAGT+AGG | + | chr5_1:27494154-27494173 | None:intergenic | 45.0% | |
| AGTTCCTACGTAGGTTCGAT+TGG | + | chr5_1:27494197-27494216 | None:intergenic | 45.0% | |
| GTACAAAAACCGTCCCTGTT+TGG | - | chr5_1:27494465-27494484 | Msa0726490:intron | 45.0% | |
| ACACTAACACCAAACAGGGA+CGG | + | chr5_1:27494477-27494496 | None:intergenic | 45.0% | |
| ! | CTCAAGCACTGTTGAAGAGA+AGG | - | chr5_1:27494544-27494563 | Msa0726490:intron | 45.0% |
| CTGTTGAAGAGAAGGCCAAA+TGG | - | chr5_1:27494552-27494571 | Msa0726490:intron | 45.0% | |
| ! | GCGGGTTGTCTAAAATGCAA+AGG | + | chr5_1:27494760-27494779 | None:intergenic | 45.0% |
| GAAAGGGCTAAGTGTGAATG+AGG | + | chr5_1:27494810-27494829 | None:intergenic | 45.0% | |
| TCACCTACCTCATTCACACT+TGG | - | chr5_1:27494800-27494819 | Msa0726490:intron | 45.0% | |
| GATTGACCCTCGCAATTTCA+AGG | - | chr5_1:27495133-27495152 | Msa0726490:intron | 45.0% | |
| AGTCACACCGTTGGAACTTA+TGG | + | chr5_1:27495208-27495227 | None:intergenic | 45.0% | |
| ATAAGTTCCAACGGTGTGAC+TGG | - | chr5_1:27495207-27495226 | Msa0726490:intron | 45.0% | |
| TTAACAACCAGTCACACCGT+TGG | + | chr5_1:27495217-27495236 | None:intergenic | 45.0% | |
| ! | TTGAACTCTCTGAGGAGATC+TGG | + | chr5_1:27495386-27495405 | None:intergenic | 45.0% |
| GCGGTAAATTGAACTCTCTG+AGG | + | chr5_1:27495394-27495413 | None:intergenic | 45.0% | |
| GAGAGTTCAATTTACCGCTC+GGG | - | chr5_1:27495396-27495415 | Msa0726490:intron | 45.0% | |
| !! | TTTTGAGGAAATAGCCCGAG+CGG | + | chr5_1:27495413-27495432 | None:intergenic | 45.0% |
| GTAGACAATCAGCTTACCCT+TGG | + | chr5_1:27495462-27495481 | None:intergenic | 45.0% | |
| CTACTTACCATCTGCATGTG+AGG | - | chr5_1:27495478-27495497 | Msa0726490:intron | 45.0% | |
| GGGAAAGCTTTCAGCAATAG+AGG | - | chr5_1:27495562-27495581 | Msa0726490:CDS | 45.0% | |
| GTGACAAGTGTGACAGTAGA+GGG | - | chr5_1:27495617-27495636 | Msa0726490:CDS | 45.0% | |
| ! | CTGCTGGTGTTAAGAAGTCA+AGG | - | chr5_1:27495666-27495685 | Msa0726490:five_prime_UTR | 45.0% |
| GGTGTATCGTAAGCATCCTT+TGG | + | chr5_1:27495692-27495711 | None:intergenic | 45.0% | |
| !!! | AAATAGTTTTTTTTTTTTTT+TGG | - | chr5_1:27493442-27493461 | Msa0726490:intron | 5.0% |
| !!! | AATAGTTTTTTTTTTTTTTT+GGG | - | chr5_1:27493443-27493462 | Msa0726490:intron | 5.0% |
| CTCGGGTTTGATTCTCTCCA+GGG | + | chr5_1:27492966-27492985 | None:intergenic | 50.0% | |
| TCTCGGGTTTGATTCTCTCC+AGG | + | chr5_1:27492967-27492986 | None:intergenic | 50.0% | |
| AGTGAAGTCGAAGCGAAGCA+CGG | + | chr5_1:27493924-27493943 | None:intergenic | 50.0% | |
| GCTTCGACTTCACTCTGGTT+CGG | - | chr5_1:27493930-27493949 | Msa0726490:intron | 50.0% | |
| CGTCCCTCATGTTTACGTTC+CGG | - | chr5_1:27494171-27494190 | Msa0726490:intron | 50.0% | |
| TGGCCGGAACGTAAACATGA+GGG | + | chr5_1:27494177-27494196 | None:intergenic | 50.0% | |
| TTGGCCGGAACGTAAACATG+AGG | + | chr5_1:27494178-27494197 | None:intergenic | 50.0% | |
| TCAGGAACGAGTTCCTACGT+AGG | + | chr5_1:27494206-27494225 | None:intergenic | 50.0% | |
| GGGCTAAGTGTGAATGAGGT+AGG | + | chr5_1:27494806-27494825 | None:intergenic | 50.0% | |
| GAAAGGGCCAAGTGTGAATG+AGG | + | chr5_1:27494981-27495000 | None:intergenic | 50.0% | |
| ! | GAGAAAGTGTGTCGGGGAAA+GGG | + | chr5_1:27494997-27495016 | None:intergenic | 50.0% |
| ! | AGAGAAAGTGTGTCGGGGAA+AGG | + | chr5_1:27494998-27495017 | None:intergenic | 50.0% |
| CCTTTCTGTGGCTTACCTGT+GGG | + | chr5_1:27495359-27495378 | None:intergenic | 50.0% | |
| ACCTTTCTGTGGCTTACCTG+TGG | + | chr5_1:27495360-27495379 | None:intergenic | 50.0% | |
| AAGCTGACCTCACATGCAGA+TGG | + | chr5_1:27495488-27495507 | None:intergenic | 50.0% | |
| TGCATGTGAGGTCAGCTTCA+AGG | - | chr5_1:27495490-27495509 | Msa0726490:intron | 50.0% | |
| CGATATGCAACCCGAGTCAA+AGG | - | chr5_1:27495527-27495546 | Msa0726490:intron | 50.0% | |
| GGTGACAAGTGTGACAGTAG+AGG | - | chr5_1:27495616-27495635 | Msa0726490:CDS | 50.0% | |
| GAATCAAACCCGAGACCTCG+AGG | - | chr5_1:27492972-27492991 | Msa0726490:intron | 55.0% | |
| TGTACTCCTCCTCGAGGTCT+CGG | + | chr5_1:27492984-27493003 | None:intergenic | 55.0% | |
| ATCGTGCGATCCTACGTGCT+GGG | + | chr5_1:27493879-27493898 | None:intergenic | 55.0% | |
| GCTTCGCTTCGACTTCACTC+TGG | - | chr5_1:27493925-27493944 | Msa0726490:intron | 55.0% | |
| CCTACGTAGGTTCGATTGGC+CGG | + | chr5_1:27494193-27494212 | None:intergenic | 55.0% | |
| GGGCCAAGTGTGAATGAGGT+AGG | + | chr5_1:27494977-27494996 | None:intergenic | 55.0% | |
| ! | TGCTCTGAATGCCTTCCCAC+AGG | - | chr5_1:27495341-27495360 | Msa0726490:intron | 55.0% |
| TCTGTGGCTTACCTGTGGGA+AGG | + | chr5_1:27495355-27495374 | None:intergenic | 55.0% | |
| CCCACAGGTAAGCCACAGAA+AGG | - | chr5_1:27495356-27495375 | Msa0726490:intron | 55.0% | |
| TCAAACCCGAGACCTCGAGG+AGG | - | chr5_1:27492975-27492994 | Msa0726490:intron | 60.0% | |
| GTACTCCTCCTCGAGGTCTC+GGG | + | chr5_1:27492983-27493002 | None:intergenic | 60.0% | |
| ! | TGGGAGTGTACTCCTCCTCG+AGG | + | chr5_1:27492990-27493009 | None:intergenic | 60.0% |
| ! | TCGAGGAGGAGTACACTCCC+AGG | - | chr5_1:27492989-27493008 | Msa0726490:intron | 60.0% |
| AGGAACGAGTCCCAGCACGT+AGG | - | chr5_1:27493866-27493885 | Msa0726490:intron | 60.0% | |
| GATCGTGCGATCCTACGTGC+TGG | + | chr5_1:27493880-27493899 | None:intergenic | 60.0% | |
| !! | GAAGCACGGTTGAGGTGCTG+TGG | + | chr5_1:27493910-27493929 | None:intergenic | 60.0% |
| GTCGAAGCGAAGCACGGTTG+AGG | + | chr5_1:27493918-27493937 | None:intergenic | 60.0% | |
| CCGGCCAATCGAACCTACGT+AGG | - | chr5_1:27494190-27494209 | Msa0726490:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 27492462 | 27495727 | 27492462 | ID=Msa0726490;Name=Msa0726490 |
| chr5_1 | mRNA | 27492462 | 27495727 | 27492462 | ID=Msa0726490-mRNA-1;Parent=Msa0726490;Name=Msa0726490-mRNA-1;_AED=0.09;_eAED=0.09;_QI=69|0.66|0.5|1|0.66|0.5|4|0|172 |
| chr5_1 | exon | 27492462 | 27492572 | 27492462 | ID=Msa0726490-mRNA-1:exon:9675;Parent=Msa0726490-mRNA-1 |
| chr5_1 | exon | 27492585 | 27492826 | 27492585 | ID=Msa0726490-mRNA-1:exon:9674;Parent=Msa0726490-mRNA-1 |
| chr5_1 | exon | 27493596 | 27493650 | 27493596 | ID=Msa0726490-mRNA-1:exon:9673;Parent=Msa0726490-mRNA-1 |
| chr5_1 | exon | 27495551 | 27495727 | 27495551 | ID=Msa0726490-mRNA-1:exon:9672;Parent=Msa0726490-mRNA-1 |
| chr5_1 | five_prime_UTR | 27495659 | 27495727 | 27495659 | ID=Msa0726490-mRNA-1:five_prime_utr;Parent=Msa0726490-mRNA-1 |
| chr5_1 | CDS | 27495551 | 27495658 | 27495551 | ID=Msa0726490-mRNA-1:cds;Parent=Msa0726490-mRNA-1 |
| chr5_1 | CDS | 27493596 | 27493650 | 27493596 | ID=Msa0726490-mRNA-1:cds;Parent=Msa0726490-mRNA-1 |
| chr5_1 | CDS | 27492585 | 27492826 | 27492585 | ID=Msa0726490-mRNA-1:cds;Parent=Msa0726490-mRNA-1 |
| chr5_1 | CDS | 27492462 | 27492572 | 27492462 | ID=Msa0726490-mRNA-1:cds;Parent=Msa0726490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
