Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846680 | XP_003613966.1 | 96.667 | 180 | 6 | 0 | 1 | 180 | 1 | 180 | 2.62e-122 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846680 | sp|Q9M015|Y5161_ARATH | 48.193 | 166 | 83 | 1 | 15 | 180 | 8 | 170 | 4.73e-56 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846680 | G7JWQ2 | 96.667 | 180 | 6 | 0 | 1 | 180 | 1 | 180 | 1.25e-122 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0726490 | Msa0846680 | 0.852541 | 4.314847e-61 | -8.615850e-47 |
| Msa0766850 | Msa0846680 | 0.811523 | 6.711114e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846680 | MtrunA17_Chr5g0418311 | 96.667 | 180 | 6 | 0 | 1 | 180 | 1 | 180 | 2.41e-126 | 352 |
| Msa0846680 | MtrunA17_Chr4g0061181 | 62.431 | 181 | 60 | 2 | 1 | 180 | 1 | 174 | 1.84e-78 | 231 |
| Msa0846680 | MtrunA17_Chr7g0243261 | 48.889 | 180 | 82 | 2 | 1 | 180 | 1 | 170 | 2.86e-58 | 180 |
| Msa0846680 | MtrunA17_Chr4g0005561 | 50.000 | 166 | 80 | 1 | 15 | 180 | 8 | 170 | 3.29e-58 | 179 |
| Msa0846680 | MtrunA17_Chr7g0269431 | 36.709 | 79 | 48 | 2 | 63 | 140 | 33 | 110 | 1.68e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846680 | AT2G03350.1 | 74.011 | 177 | 44 | 1 | 1 | 177 | 1 | 175 | 1.41e-93 | 270 |
| Msa0846680 | AT5G37070.1 | 47.778 | 180 | 84 | 2 | 1 | 180 | 1 | 170 | 1.98e-59 | 183 |
| Msa0846680 | AT3G08890.1 | 47.222 | 180 | 85 | 2 | 1 | 180 | 1 | 170 | 8.38e-58 | 179 |
| Msa0846680 | AT3G08890.2 | 47.222 | 180 | 85 | 2 | 1 | 180 | 1 | 170 | 8.38e-58 | 179 |
| Msa0846680 | AT5G01610.2 | 48.193 | 166 | 83 | 1 | 15 | 180 | 8 | 170 | 4.81e-57 | 177 |
| Msa0846680 | AT5G01610.1 | 48.193 | 166 | 83 | 1 | 15 | 180 | 8 | 170 | 4.81e-57 | 177 |
| Msa0846680 | AT1G02816.1 | 25.893 | 112 | 77 | 3 | 64 | 172 | 35 | 143 | 3.52e-12 | 62.0 |
| Msa0846680 | AT5G16380.1 | 26.772 | 127 | 89 | 3 | 49 | 173 | 19 | 143 | 1.03e-11 | 61.2 |
| Msa0846680 | AT4G02370.1 | 27.723 | 101 | 69 | 2 | 64 | 163 | 35 | 132 | 1.59e-11 | 60.1 |
Find 56 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTGAATGGAAGTTAATT+TGG | 0.188755 | 5_4:-27282948 | Msa0846680:three_prime_UTR |
| GAATTCTTCTTTAGCTTTCT+TGG | 0.223135 | 5_4:+27286061 | None:intergenic |
| ACAACACAAGAACGAGAAAA+AGG | 0.223448 | 5_4:+27286187 | None:intergenic |
| CTTCTCTATATTATATATAT+TGG | 0.242497 | 5_4:-27283000 | Msa0846680:three_prime_UTR |
| GTATAGTTAGTCTAATTTAT+TGG | 0.254231 | 5_4:-27283059 | Msa0846680:three_prime_UTR |
| GTTACAAATCTGATAAGATT+TGG | 0.265998 | 5_4:-27283202 | Msa0846680:CDS |
| ATTGGATATGTTTACATAGA+AGG | 0.272787 | 5_4:-27283041 | Msa0846680:three_prime_UTR |
| GGGAAAGATTTCACAAATAG+AGG | 0.304268 | 5_4:-27283279 | Msa0846680:CDS |
| TATTGGATGTACTGCAGTTC+TGG | 0.333625 | 5_4:-27282983 | Msa0846680:three_prime_UTR |
| TGAAGACAAAAGTTCTTGTA+TGG | 0.341823 | 5_4:-27283253 | Msa0846680:CDS |
| TTACAAATCTGATAAGATTT+GGG | 0.365699 | 5_4:-27283201 | Msa0846680:CDS |
| TCATTCATTGTTACACTGAA+TGG | 0.384428 | 5_4:-27282960 | Msa0846680:three_prime_UTR |
| AGATTGGACTTGGTGATTCA+TGG | 0.388734 | 5_4:-27286088 | Msa0846680:CDS |
| AAAAGTTCTTGTATGGGTTA+AGG | 0.389564 | 5_4:-27283246 | Msa0846680:CDS |
| CTCAAGCACTGTTGAAGAAA+AGG | 0.392322 | 5_4:-27284501 | Msa0846680:CDS |
| ACATAGAAGGTGTAGGGGTT+AGG | 0.392744 | 5_4:-27283028 | Msa0846680:three_prime_UTR |
| TTATAATCTTTGAGGAGATC+TGG | 0.426726 | 5_4:+27283458 | None:intergenic |
| CTGTTGAAGAAAAGGCCAAA+TGG | 0.427835 | 5_4:-27284493 | Msa0846680:CDS |
| TAGTTTGTTGAAAACCCATT+TGG | 0.430521 | 5_4:+27284478 | None:intergenic |
| AAAGTGGCAAGTTTGAAGAT+TGG | 0.439753 | 5_4:-27286104 | Msa0846680:CDS |
| TGTTGAAGAAAAGGCCAAAT+GGG | 0.457433 | 5_4:-27284492 | Msa0846680:CDS |
| GGTGTATCGTAAGCATCCTT+TGG | 0.469228 | 5_4:+27283152 | None:intergenic |
| TGCATGTGAGGTCAGCTTCA+AGG | 0.469233 | 5_4:-27283351 | Msa0846680:CDS |
| ATGTTTACATAGAAGGTGTA+GGG | 0.472196 | 5_4:-27283034 | Msa0846680:three_prime_UTR |
| TCGTTGTTGTTCTATTCGTA+TGG | 0.475288 | 5_4:-27283081 | Msa0846680:three_prime_UTR |
| AAGATTATAATTTACCGCTC+GGG | 0.497684 | 5_4:-27283445 | Msa0846680:CDS |
| GTGACAAGTGTGACAGTTGA+GGG | 0.501025 | 5_4:-27283224 | Msa0846680:CDS |
| GTAGACAATCAGCTTACCCT+TGG | 0.505031 | 5_4:+27283382 | None:intergenic |
| CCCACAGGTAAGCCACAGAA+AGG | 0.506420 | 5_4:-27283485 | Msa0846680:intron |
| AAAGATTATAATTTACCGCT+CGG | 0.506636 | 5_4:-27283446 | Msa0846680:CDS |
| GAGTCAAATGTGTTCTTACA+AGG | 0.514170 | 5_4:-27283301 | Msa0846680:CDS |
| GATAAGATTTGGGTTACTGC+TGG | 0.516200 | 5_4:-27283191 | Msa0846680:CDS |
| GCGGTAAATTATAATCTTTG+AGG | 0.520183 | 5_4:+27283450 | None:intergenic |
| TGATACTCTAATAGCATCGC+GGG | 0.521480 | 5_4:+27283130 | None:intergenic |
| TATGTTTACATAGAAGGTGT+AGG | 0.527245 | 5_4:-27283035 | Msa0846680:three_prime_UTR |
| GAAGACAAAAGTTCTTGTAT+GGG | 0.537679 | 5_4:-27283252 | Msa0846680:CDS |
| GCAAGTTTGAAGATTGGACT+TGG | 0.547752 | 5_4:-27286098 | Msa0846680:CDS |
| CACATTGCAACAACACAAGA+TGG | 0.547854 | 5_4:-27286141 | Msa0846680:exon |
| GGTGACAAGTGTGACAGTTG+AGG | 0.555535 | 5_4:-27283225 | Msa0846680:CDS |
| TTGTAAGAACACATTTGACT+CGG | 0.564903 | 5_4:+27283303 | None:intergenic |
| GGAGAAAGCTCTCACTAAAG+TGG | 0.571492 | 5_4:-27286120 | Msa0846680:CDS |
| CTACTTACCATCTGCATGTG+AGG | 0.574237 | 5_4:-27283363 | Msa0846680:CDS |
| CTGCTGGTGTTAAGAAGTCA+AGG | 0.578489 | 5_4:-27283175 | Msa0846680:CDS |
| GGAAAGATTTCACAAATAGA+GGG | 0.578663 | 5_4:-27283278 | Msa0846680:CDS |
| TGTAAGAACACATTTGACTC+GGG | 0.585911 | 5_4:+27283304 | None:intergenic |
| AGATCTGGTAAACCTTTCTG+TGG | 0.597603 | 5_4:+27283473 | None:intergenic |
| GTCAAATGTGTTCTTACAAG+GGG | 0.598086 | 5_4:-27283299 | Msa0846680:CDS |
| AAGCTGACCTCACATGCAGA+TGG | 0.613619 | 5_4:+27283356 | None:intergenic |
| TATGAGTTTGACGAAACCAA+GGG | 0.622312 | 5_4:-27283398 | Msa0846680:CDS |
| TTATGAGTTTGACGAAACCA+AGG | 0.622560 | 5_4:-27283399 | Msa0846680:CDS |
| TGTTTACATAGAAGGTGTAG+GGG | 0.639448 | 5_4:-27283033 | Msa0846680:three_prime_UTR |
| TGTTAAGAAGTCAAGGCCAA+AGG | 0.647193 | 5_4:-27283168 | Msa0846680:CDS |
| AGTCAAATGTGTTCTTACAA+GGG | 0.654060 | 5_4:-27283300 | Msa0846680:CDS |
| CTGATACTCTAATAGCATCG+CGG | 0.658665 | 5_4:+27283129 | None:intergenic |
| GATACTCTAATAGCATCGCG+GGG | 0.730178 | 5_4:+27283131 | None:intergenic |
| GGTTGCATATCGCAGCACAG+AGG | 0.767193 | 5_4:+27283325 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTAAAATATAGTTTTTTTT+TGG | - | chr5_4:27283902-27283921 | Msa0846680:intron | 10.0% |
| !!! | CTAAAATATAGTTTTTTTTT+GGG | - | chr5_4:27283903-27283922 | Msa0846680:intron | 10.0% |
| !!! | TTGTTATTTCATAAATTAAA+GGG | + | chr5_4:27285148-27285167 | None:intergenic | 10.0% |
| !!! | TTTGTTATTTCATAAATTAA+AGG | + | chr5_4:27285149-27285168 | None:intergenic | 10.0% |
| !!! | GCTAAATATAAATTGATTTA+AGG | + | chr5_4:27283665-27283684 | None:intergenic | 15.0% |
| !!! | TATATTTTAGTTAGAAACAA+AGG | + | chr5_4:27283893-27283912 | None:intergenic | 15.0% |
| !!! | TTTTGGGTATATTAAAAAAA+CGG | - | chr5_4:27283919-27283938 | Msa0846680:intron | 15.0% |
| !! | TTCTCAATATTACTAATAAA+TGG | + | chr5_4:27284459-27284478 | None:intergenic | 15.0% |
| !! | TGAGTTTAAATTTAAATATC+AGG | - | chr5_4:27285074-27285093 | Msa0846680:intron | 15.0% |
| !! | CTTCTCTATATTATATATAT+TGG | - | chr5_4:27286116-27286135 | Msa0846680:CDS | 15.0% |
| !!! | ATTTTGCAAAACAATTCATT+CGG | - | chr5_4:27283704-27283723 | Msa0846680:intron | 20.0% |
| !!! | TTTTGATGTTTCTTTAGTTT+AGG | - | chr5_4:27283825-27283844 | Msa0846680:intron | 20.0% |
| !!! | TTTGATGTTTCTTTAGTTTA+GGG | - | chr5_4:27283826-27283845 | Msa0846680:intron | 20.0% |
| !! | ATTATCTACAATACTTAGAA+AGG | + | chr5_4:27284024-27284043 | None:intergenic | 20.0% |
| !!! | ATACATTTTATTACGCTTTA+TGG | + | chr5_4:27284498-27284517 | None:intergenic | 20.0% |
| !! | ATTGATGTTCCTTAATTTAA+GGG | + | chr5_4:27285177-27285196 | None:intergenic | 20.0% |
| !! | TTAAAATCAATGAAAAAACC+TGG | - | chr5_4:27285239-27285258 | Msa0846680:intron | 20.0% |
| !! | TTACAAATCTGATAAGATTT+GGG | - | chr5_4:27285915-27285934 | Msa0846680:intron | 20.0% |
| !!! | GTATAGTTAGTCTAATTTAT+TGG | - | chr5_4:27286057-27286076 | Msa0846680:CDS | 20.0% |
| !!! | TCTTTTTTTTCCCTTTAATG+TGG | - | chr5_4:27283169-27283188 | Msa0846680:CDS | 25.0% |
| ! | ATTGAAACTTTCCATGAAAA+GGG | + | chr5_4:27283217-27283236 | None:intergenic | 25.0% |
| ! | AATTGAAACTTTCCATGAAA+AGG | + | chr5_4:27283218-27283237 | None:intergenic | 25.0% |
| ! | TTTCATGGAAAGTTTCAATT+TGG | - | chr5_4:27283218-27283237 | Msa0846680:CDS | 25.0% |
| ! | TTCATGGAAAGTTTCAATTT+GGG | - | chr5_4:27283219-27283238 | Msa0846680:CDS | 25.0% |
| ! | TTCAAAAAAACCTTGGATTT+GGG | - | chr5_4:27283410-27283429 | Msa0846680:CDS | 25.0% |
| ! | TATTCCTCAAAGATTTGAAT+AGG | - | chr5_4:27283474-27283493 | Msa0846680:CDS | 25.0% |
| ! | ATCTCCTATTCAACTAAAAA+TGG | + | chr5_4:27283521-27283540 | None:intergenic | 25.0% |
| !! | CAATTTGATTCCTCTAAAAA+TGG | + | chr5_4:27283561-27283580 | None:intergenic | 25.0% |
| ! | TTCCATAAATGAATATGCAA+TGG | - | chr5_4:27283856-27283875 | Msa0846680:intron | 25.0% |
| !! | TATTAAAAAAACGGCCTTTT+TGG | - | chr5_4:27283928-27283947 | Msa0846680:intron | 25.0% |
| ! | TAAACAATCAATCACATGAT+CGG | + | chr5_4:27284180-27284199 | None:intergenic | 25.0% |
| ! | TCATGTGATTGATTGTTTAA+AGG | - | chr5_4:27284181-27284200 | Msa0846680:intron | 25.0% |
| !!! | TCCATGAAGTTATTTCTAAA+TGG | - | chr5_4:27284212-27284231 | Msa0846680:intron | 25.0% |
| !! | TTTTATTACGCTTTATGGTT+TGG | + | chr5_4:27284493-27284512 | None:intergenic | 25.0% |
| !!! | ACAATGTTTTTGCTGATATA+AGG | - | chr5_4:27284572-27284591 | Msa0846680:intron | 25.0% |
| ! | TTTCAACAAACTAAAAGGTA+TGG | - | chr5_4:27284648-27284667 | Msa0846680:intron | 25.0% |
| ! | GATTGATGTTCCTTAATTTA+AGG | + | chr5_4:27285178-27285197 | None:intergenic | 25.0% |
| ! | GATTATTCAAATCAATATCC+AGG | + | chr5_4:27285260-27285279 | None:intergenic | 25.0% |
| !!! | ATTTTAGCACTACAATCAAA+AGG | + | chr5_4:27285310-27285329 | None:intergenic | 25.0% |
| ! | TTGATTGTAGTGCTAAAATT+TGG | - | chr5_4:27285311-27285330 | Msa0846680:intron | 25.0% |
| ! | AAAGATTATAATTTACCGCT+CGG | - | chr5_4:27285670-27285689 | Msa0846680:intron | 25.0% |
| !! | TCATAACAGATTATGTTTTG+AGG | + | chr5_4:27285703-27285722 | None:intergenic | 25.0% |
| ! | GTTACAAATCTGATAAGATT+TGG | - | chr5_4:27285914-27285933 | Msa0846680:intron | 25.0% |
| ! | ATTGGATATGTTTACATAGA+AGG | - | chr5_4:27286075-27286094 | Msa0846680:CDS | 25.0% |
| !! | GAATTCTTCTTTAGCTTTCT+TGG | + | chr5_4:27283058-27283077 | None:intergenic | 30.0% |
| !! | TTTGAAACAACCTTGGATTT+TGG | - | chr5_4:27283277-27283296 | Msa0846680:CDS | 30.0% |
| TAGCTTCTTCAAAAAAACCT+TGG | - | chr5_4:27283403-27283422 | Msa0846680:CDS | 30.0% | |
| CTTCAAAAAAACCTTGGATT+TGG | - | chr5_4:27283409-27283428 | Msa0846680:CDS | 30.0% | |
| ATCTCCTATTCAAATCTTTG+AGG | + | chr5_4:27283481-27283500 | None:intergenic | 30.0% | |
| !!! | GGTTCCATTTTTAGTTGAAT+AGG | - | chr5_4:27283514-27283533 | Msa0846680:intron | 30.0% |
| ! | AGAGGAATCAAATTGATTCT+TGG | - | chr5_4:27283566-27283585 | Msa0846680:intron | 30.0% |
| TTAGTATGTGTTTGGTTATG+TGG | + | chr5_4:27283745-27283764 | None:intergenic | 30.0% | |
| AAACAAGCTTAGTATGTGTT+TGG | + | chr5_4:27283753-27283772 | None:intergenic | 30.0% | |
| !!! | ACATACTAAGCTTGTTTTAG+TGG | - | chr5_4:27283756-27283775 | Msa0846680:intron | 30.0% |
| !! | TTCTGTTTTGGATGTGAAAT+TGG | - | chr5_4:27283792-27283811 | Msa0846680:intron | 30.0% |
| !! | TCTGTTTTGGATGTGAAATT+GGG | - | chr5_4:27283793-27283812 | Msa0846680:intron | 30.0% |
| GTCCATTGCATATTCATTTA+TGG | + | chr5_4:27283861-27283880 | None:intergenic | 30.0% | |
| ! | TCTGAAAGATCCAAATTTTC+AGG | + | chr5_4:27283972-27283991 | None:intergenic | 30.0% |
| !!! | GTAGATAATTTATTTTGCCC+TGG | - | chr5_4:27284035-27284054 | Msa0846680:intron | 30.0% |
| !! | ATGAATGAAGTCATTTTCCA+GGG | + | chr5_4:27284055-27284074 | None:intergenic | 30.0% |
| !! | AATGAATGAAGTCATTTTCC+AGG | + | chr5_4:27284056-27284075 | None:intergenic | 30.0% |
| AATTTCATCGAGAGATTACT+AGG | - | chr5_4:27284095-27284114 | Msa0846680:intron | 30.0% | |
| ATTTCATCGAGAGATTACTA+GGG | - | chr5_4:27284096-27284115 | Msa0846680:intron | 30.0% | |
| ! | TTGTTCGTTTTCAAATTGCA+GGG | + | chr5_4:27284131-27284150 | None:intergenic | 30.0% |
| ! | ATTGTTCGTTTTCAAATTGC+AGG | + | chr5_4:27284132-27284151 | None:intergenic | 30.0% |
| GCCATTTAGAAATAACTTCA+TGG | + | chr5_4:27284216-27284235 | None:intergenic | 30.0% | |
| CTTGATTGATGCAAAATTCT+TGG | + | chr5_4:27284311-27284330 | None:intergenic | 30.0% | |
| !! | TAGTTTGTTGAAAACCCATT+TGG | + | chr5_4:27284641-27284660 | None:intergenic | 30.0% |
| ! | TGGGTTTTCAACAAACTAAA+AGG | - | chr5_4:27284643-27284662 | Msa0846680:intron | 30.0% |
| GAAAAAATGCATAAACTCAC+TGG | + | chr5_4:27284696-27284715 | None:intergenic | 30.0% | |
| AGCAGTCTATTTGAATCAAT+TGG | + | chr5_4:27284734-27284753 | None:intergenic | 30.0% | |
| CATGAAAAACTTATTATCGC+AGG | + | chr5_4:27284842-27284861 | None:intergenic | 30.0% | |
| !! | TCTTGGTCTTTGAAATTGTA+AGG | - | chr5_4:27285107-27285126 | Msa0846680:intron | 30.0% |
| !! | CTTGGTCTTTGAAATTGTAA+GGG | - | chr5_4:27285108-27285127 | Msa0846680:intron | 30.0% |
| CAAATCAGTCCCTTAAATTA+AGG | - | chr5_4:27285165-27285184 | Msa0846680:intron | 30.0% | |
| TATGATCTTCAAATTTGCGA+GGG | + | chr5_4:27285418-27285437 | None:intergenic | 30.0% | |
| TTATGATCTTCAAATTTGCG+AGG | + | chr5_4:27285419-27285438 | None:intergenic | 30.0% | |
| CTAGGCAGTTATTATTTCAA+TGG | - | chr5_4:27285535-27285554 | Msa0846680:intron | 30.0% | |
| ! | TTATAATCTTTGAGGAGATC+TGG | + | chr5_4:27285661-27285680 | None:intergenic | 30.0% |
| GCGGTAAATTATAATCTTTG+AGG | + | chr5_4:27285669-27285688 | None:intergenic | 30.0% | |
| AAGATTATAATTTACCGCTC+GGG | - | chr5_4:27285671-27285690 | Msa0846680:intron | 30.0% | |
| TTGTAAGAACACATTTGACT+CGG | + | chr5_4:27285816-27285835 | None:intergenic | 30.0% | |
| AGTCAAATGTGTTCTTACAA+GGG | - | chr5_4:27285816-27285835 | Msa0846680:intron | 30.0% | |
| GGAAAGATTTCACAAATAGA+GGG | - | chr5_4:27285838-27285857 | Msa0846680:intron | 30.0% | |
| TGAAGACAAAAGTTCTTGTA+TGG | - | chr5_4:27285863-27285882 | Msa0846680:intron | 30.0% | |
| GAAGACAAAAGTTCTTGTAT+GGG | - | chr5_4:27285864-27285883 | Msa0846680:intron | 30.0% | |
| ! | AAAAGTTCTTGTATGGGTTA+AGG | - | chr5_4:27285870-27285889 | Msa0846680:intron | 30.0% |
| ! | TATGTTTACATAGAAGGTGT+AGG | - | chr5_4:27286081-27286100 | Msa0846680:CDS | 30.0% |
| ! | ATGTTTACATAGAAGGTGTA+GGG | - | chr5_4:27286082-27286101 | Msa0846680:CDS | 30.0% |
| TCATTCATTGTTACACTGAA+TGG | - | chr5_4:27286156-27286175 | Msa0846680:five_prime_UTR | 30.0% | |
| ACACTGAATGGAAGTTAATT+TGG | - | chr5_4:27286168-27286187 | Msa0846680:five_prime_UTR | 30.0% | |
| CAACACAAGAACGAGAAAAA+GGG | + | chr5_4:27282931-27282950 | None:intergenic | 35.0% | |
| ACAACACAAGAACGAGAAAA+AGG | + | chr5_4:27282932-27282951 | None:intergenic | 35.0% | |
| AAAGTGGCAAGTTTGAAGAT+TGG | - | chr5_4:27283012-27283031 | Msa0846680:three_prime_UTR | 35.0% | |
| !!! | TCCCTTTAATGTGGCTTTTT+TGG | - | chr5_4:27283178-27283197 | Msa0846680:CDS | 35.0% |
| CCCAAAAAAGCCACATTAAA+GGG | + | chr5_4:27283182-27283201 | None:intergenic | 35.0% | |
| !!! | CCCTTTAATGTGGCTTTTTT+GGG | - | chr5_4:27283179-27283198 | Msa0846680:CDS | 35.0% |
| ACCCAAAAAAGCCACATTAA+AGG | + | chr5_4:27283183-27283202 | None:intergenic | 35.0% | |
| !! | TGTTAGTTTGACCCTTTTCA+TGG | - | chr5_4:27283203-27283222 | Msa0846680:CDS | 35.0% |
| ! | TTGCTTGTTTGAAACAACCT+TGG | - | chr5_4:27283270-27283289 | Msa0846680:CDS | 35.0% |
| !! | AATGGGTTATCCAAAATCCA+AGG | + | chr5_4:27283290-27283309 | None:intergenic | 35.0% |
| ! | TGGATTTTGGATAACCCATT+TGG | - | chr5_4:27283290-27283309 | Msa0846680:CDS | 35.0% |
| ! | GGATTTTGGATAACCCATTT+GGG | - | chr5_4:27283291-27283310 | Msa0846680:CDS | 35.0% |
| ATTCTCTCCGATGTCAATTT+AGG | - | chr5_4:27283370-27283389 | Msa0846680:CDS | 35.0% | |
| TAGTCCACCTAAATTGACAT+CGG | + | chr5_4:27283380-27283399 | None:intergenic | 35.0% | |
| CAAATATCAACCCAAATCCA+AGG | + | chr5_4:27283423-27283442 | None:intergenic | 35.0% | |
| !! | CTTGGATTTGGGTTGATATT+TGG | - | chr5_4:27283421-27283440 | Msa0846680:CDS | 35.0% |
| TAGGAGATTAAGTGTGTGTT+TGG | - | chr5_4:27283493-27283512 | Msa0846680:intron | 35.0% | |
| TAGGAGATTAAGTGTGTGTT+TGG | - | chr5_4:27283493-27283512 | Msa0846680:intron | 35.0% | |
| !! | GTGTTTGGTTCCATTTTTAG+AGG | - | chr5_4:27283508-27283527 | Msa0846680:intron | 35.0% |
| ! | TCTCATGGAATGTTCTGTTT+TGG | - | chr5_4:27283780-27283799 | Msa0846680:intron | 35.0% |
| TTCAACACAGACAACCAAAA+AGG | + | chr5_4:27283945-27283964 | None:intergenic | 35.0% | |
| !! | TTTTGGTTGTCTGTGTTGAA+TGG | - | chr5_4:27283945-27283964 | Msa0846680:intron | 35.0% |
| GTTGAATGGACCTGAAAATT+TGG | - | chr5_4:27283959-27283978 | Msa0846680:intron | 35.0% | |
| ! | TGTTCGTTTTCAAATTGCAG+GGG | + | chr5_4:27284130-27284149 | None:intergenic | 35.0% |
| ATATGACATGTAGAGGATCT+TGG | + | chr5_4:27284238-27284257 | None:intergenic | 35.0% | |
| AAGCTACATATGACATGTAG+AGG | + | chr5_4:27284245-27284264 | None:intergenic | 35.0% | |
| ATGTGTTGTCTACTACTCTA+TGG | - | chr5_4:27284411-27284430 | Msa0846680:intron | 35.0% | |
| TAAATGGATGATGACTCACT+TGG | + | chr5_4:27284443-27284462 | None:intergenic | 35.0% | |
| ACGAAAACCATTCGTTTGAA+TGG | - | chr5_4:27284526-27284545 | Msa0846680:intron | 35.0% | |
| AGTAACACTAACACCAAACA+GGG | + | chr5_4:27284552-27284571 | None:intergenic | 35.0% | |
| TAGTAACACTAACACCAAAC+AGG | + | chr5_4:27284553-27284572 | None:intergenic | 35.0% | |
| TGTTGAAGAAAAGGCCAAAT+GGG | - | chr5_4:27284624-27284643 | Msa0846680:intron | 35.0% | |
| TAAACTCACTGGAACATCTA+GGG | + | chr5_4:27284685-27284704 | None:intergenic | 35.0% | |
| ATAAACTCACTGGAACATCT+AGG | + | chr5_4:27284686-27284705 | None:intergenic | 35.0% | |
| TTTCACCTAGTTTAGCATGA+CGG | + | chr5_4:27284762-27284781 | None:intergenic | 35.0% | |
| ! | CATATAAGAGAAAGTGTGTC+AGG | + | chr5_4:27284897-27284916 | None:intergenic | 35.0% |
| TATCAGGTTAATGAGCATCT+TGG | - | chr5_4:27285090-27285109 | Msa0846680:intron | 35.0% | |
| AGTCACATCTCTGTAACTTA+TGG | + | chr5_4:27285484-27285503 | None:intergenic | 35.0% | |
| ATAAGTTACAGAGATGTGAC+TGG | - | chr5_4:27285483-27285502 | Msa0846680:intron | 35.0% | |
| TTATGAGTTTGACGAAACCA+AGG | - | chr5_4:27285717-27285736 | Msa0846680:intron | 35.0% | |
| TATGAGTTTGACGAAACCAA+GGG | - | chr5_4:27285718-27285737 | Msa0846680:intron | 35.0% | |
| TGTAAGAACACATTTGACTC+GGG | + | chr5_4:27285815-27285834 | None:intergenic | 35.0% | |
| GAGTCAAATGTGTTCTTACA+AGG | - | chr5_4:27285815-27285834 | Msa0846680:intron | 35.0% | |
| GTCAAATGTGTTCTTACAAG+GGG | - | chr5_4:27285817-27285836 | Msa0846680:intron | 35.0% | |
| GGGAAAGATTTCACAAATAG+AGG | - | chr5_4:27285837-27285856 | Msa0846680:intron | 35.0% | |
| ! | TCGTTGTTGTTCTATTCGTA+TGG | - | chr5_4:27286035-27286054 | Msa0846680:intron | 35.0% |
| ! | TGTTTACATAGAAGGTGTAG+GGG | - | chr5_4:27286083-27286102 | Msa0846680:CDS | 35.0% |
| CACATTGCAACAACACAAGA+TGG | - | chr5_4:27282975-27282994 | Msa0846680:three_prime_UTR | 40.0% | |
| GCAAGTTTGAAGATTGGACT+TGG | - | chr5_4:27283018-27283037 | Msa0846680:three_prime_UTR | 40.0% | |
| !! | AGATTGGACTTGGTGATTCA+TGG | - | chr5_4:27283028-27283047 | Msa0846680:three_prime_UTR | 40.0% |
| TTTGGATAACCCATTTGGGT+TGG | - | chr5_4:27283295-27283314 | Msa0846680:CDS | 40.0% | |
| !! | TGGCATAGTGGTATTGACTT+AGG | - | chr5_4:27283315-27283334 | Msa0846680:CDS | 40.0% |
| ATTTGGTTGCATGCTATGTC+TGG | - | chr5_4:27283438-27283457 | Msa0846680:CDS | 40.0% | |
| !!! | GCTTGTTTTAGTGGTTCTCA+TGG | - | chr5_4:27283765-27283784 | Msa0846680:intron | 40.0% |
| ! | CTCAAGCACTGTTGAAGAAA+AGG | - | chr5_4:27284615-27284634 | Msa0846680:intron | 40.0% |
| CTGTTGAAGAAAAGGCCAAA+TGG | - | chr5_4:27284623-27284642 | Msa0846680:intron | 40.0% | |
| ! | AAGTACCGTCATGCTAAACT+AGG | - | chr5_4:27284754-27284773 | Msa0846680:intron | 40.0% |
| AAAAGGGTGAAGTGAGAATG+TGG | + | chr5_4:27284874-27284893 | None:intergenic | 40.0% | |
| ! | GAGAAAGTGTGTCAGGAAAA+GGG | + | chr5_4:27284890-27284909 | None:intergenic | 40.0% |
| ! | AGAGAAAGTGTGTCAGGAAA+AGG | + | chr5_4:27284891-27284910 | None:intergenic | 40.0% |
| TTAGAGAAGAGTGAACTCAG+AGG | + | chr5_4:27284984-27285003 | None:intergenic | 40.0% | |
| ACAATGTGAAGAAACCAGCT+GGG | + | chr5_4:27285008-27285027 | None:intergenic | 40.0% | |
| GTCTACACGCAAAAATGACT+AGG | - | chr5_4:27285517-27285536 | Msa0846680:intron | 40.0% | |
| AGATCTGGTAAACCTTTCTG+TGG | + | chr5_4:27285646-27285665 | None:intergenic | 40.0% | |
| ! | GATAAGATTTGGGTTACTGC+TGG | - | chr5_4:27285925-27285944 | Msa0846680:intron | 40.0% |
| TGTTAAGAAGTCAAGGCCAA+AGG | - | chr5_4:27285948-27285967 | Msa0846680:intron | 40.0% | |
| TGATACTCTAATAGCATCGC+GGG | + | chr5_4:27285989-27286008 | None:intergenic | 40.0% | |
| CTGATACTCTAATAGCATCG+CGG | + | chr5_4:27285990-27286009 | None:intergenic | 40.0% | |
| TATTGGATGTACTGCAGTTC+TGG | - | chr5_4:27286133-27286152 | Msa0846680:exon | 40.0% | |
| GGAGAAAGCTCTCACTAAAG+TGG | - | chr5_4:27282996-27283015 | Msa0846680:three_prime_UTR | 45.0% | |
| ACCACTATGCCAACCCAAAT+GGG | + | chr5_4:27283307-27283326 | None:intergenic | 45.0% | |
| TACCACTATGCCAACCCAAA+TGG | + | chr5_4:27283308-27283327 | None:intergenic | 45.0% | |
| CTCTCCGATGTCAATTTAGG+TGG | - | chr5_4:27283373-27283392 | Msa0846680:CDS | 45.0% | |
| AACAGGGCCATTCAAACGAA+TGG | + | chr5_4:27284536-27284555 | None:intergenic | 45.0% | |
| TTCGTTTGAATGGCCCTGTT+TGG | - | chr5_4:27284536-27284555 | Msa0846680:intron | 45.0% | |
| CACAATGTGAAGAAACCAGC+TGG | + | chr5_4:27285009-27285028 | None:intergenic | 45.0% | |
| !! | TTTTGAGGAAATAGCCCGAG+CGG | + | chr5_4:27285688-27285707 | None:intergenic | 45.0% |
| GTAGACAATCAGCTTACCCT+TGG | + | chr5_4:27285737-27285756 | None:intergenic | 45.0% | |
| CTACTTACCATCTGCATGTG+AGG | - | chr5_4:27285753-27285772 | Msa0846680:intron | 45.0% | |
| GTGACAAGTGTGACAGTTGA+GGG | - | chr5_4:27285892-27285911 | Msa0846680:intron | 45.0% | |
| ! | CTGCTGGTGTTAAGAAGTCA+AGG | - | chr5_4:27285941-27285960 | Msa0846680:intron | 45.0% |
| GGTGTATCGTAAGCATCCTT+TGG | + | chr5_4:27285967-27285986 | None:intergenic | 45.0% | |
| GATACTCTAATAGCATCGCG+GGG | + | chr5_4:27285988-27286007 | None:intergenic | 45.0% | |
| ! | ACATAGAAGGTGTAGGGGTT+AGG | - | chr5_4:27286088-27286107 | Msa0846680:CDS | 45.0% |
| !! | ACCCATTTGGGTTGGCATAG+TGG | - | chr5_4:27283303-27283322 | Msa0846680:CDS | 50.0% |
| GAGAATTGAACCTGAGACCG+AGG | + | chr5_4:27283356-27283375 | None:intergenic | 50.0% | |
| GGGTGAAGTGAGAATGTGGT+AGG | + | chr5_4:27284870-27284889 | None:intergenic | 50.0% | |
| ! | AGAGTGAACTCAGAGGTGCA+TGG | + | chr5_4:27284977-27284996 | None:intergenic | 50.0% |
| CACTCTTCTCTAAACCCAGC+TGG | - | chr5_4:27284991-27285010 | Msa0846680:intron | 50.0% | |
| CCTTTCTGTGGCTTACCTGT+GGG | + | chr5_4:27285634-27285653 | None:intergenic | 50.0% | |
| ACCTTTCTGTGGCTTACCTG+TGG | + | chr5_4:27285635-27285654 | None:intergenic | 50.0% | |
| AAGCTGACCTCACATGCAGA+TGG | + | chr5_4:27285763-27285782 | None:intergenic | 50.0% | |
| TGCATGTGAGGTCAGCTTCA+AGG | - | chr5_4:27285765-27285784 | Msa0846680:intron | 50.0% | |
| GGTGACAAGTGTGACAGTTG+AGG | - | chr5_4:27285891-27285910 | Msa0846680:intron | 50.0% | |
| GGACTTCGAAGTGTGCTCCT+CGG | - | chr5_4:27283336-27283355 | Msa0846680:CDS | 55.0% | |
| ! | TGCTCTGAATGCCTTCCCAC+AGG | - | chr5_4:27285616-27285635 | Msa0846680:intron | 55.0% |
| TCTGTGGCTTACCTGTGGGA+AGG | + | chr5_4:27285630-27285649 | None:intergenic | 55.0% | |
| CCCACAGGTAAGCCACAGAA+AGG | - | chr5_4:27285631-27285650 | Msa0846680:intron | 55.0% | |
| GGTTGCATATCGCAGCACAG+AGG | + | chr5_4:27285794-27285813 | None:intergenic | 55.0% | |
| GAAGTGTGCTCCTCGGTCTC+AGG | - | chr5_4:27283343-27283362 | Msa0846680:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 27282912 | 27286226 | 27282912 | ID=Msa0846680;Name=Msa0846680 |
| chr5_4 | mRNA | 27282912 | 27286226 | 27282912 | ID=Msa0846680-mRNA-1;Parent=Msa0846680;Name=Msa0846680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=82|1|1|1|1|1|3|209|180 |
| chr5_4 | exon | 27282912 | 27283500 | 27282912 | ID=Msa0846680-mRNA-1:exon:10524;Parent=Msa0846680-mRNA-1 |
| chr5_4 | exon | 27284474 | 27284528 | 27284474 | ID=Msa0846680-mRNA-1:exon:10523;Parent=Msa0846680-mRNA-1 |
| chr5_4 | exon | 27286037 | 27286226 | 27286037 | ID=Msa0846680-mRNA-1:exon:10522;Parent=Msa0846680-mRNA-1 |
| chr5_4 | five_prime_UTR | 27286145 | 27286226 | 27286145 | ID=Msa0846680-mRNA-1:five_prime_utr;Parent=Msa0846680-mRNA-1 |
| chr5_4 | CDS | 27286037 | 27286144 | 27286037 | ID=Msa0846680-mRNA-1:cds;Parent=Msa0846680-mRNA-1 |
| chr5_4 | CDS | 27284474 | 27284528 | 27284474 | ID=Msa0846680-mRNA-1:cds;Parent=Msa0846680-mRNA-1 |
| chr5_4 | CDS | 27283121 | 27283500 | 27283121 | ID=Msa0846680-mRNA-1:cds;Parent=Msa0846680-mRNA-1 |
| chr5_4 | three_prime_UTR | 27282912 | 27283120 | 27282912 | ID=Msa0846680-mRNA-1:three_prime_utr;Parent=Msa0846680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
