Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766850 | XP_003613966.1 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 3.20e-125 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766850 | sp|Q9M015|Y5161_ARATH | 48.795 | 166 | 82 | 1 | 15 | 180 | 8 | 170 | 4.77e-57 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766850 | G7JWQ2 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 1.53e-125 | 360 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0726490 | Msa0766850 | 0.924757 | 4.593933e-90 | -8.615850e-47 |
| Msa0766850 | Msa0846680 | 0.811523 | 6.711114e-51 | -8.615850e-47 |
| Msa0766850 | Msa1348090 | 0.811667 | 6.243074e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766850 | MtrunA17_Chr5g0418311 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 2.95e-129 | 360 |
| Msa0766850 | MtrunA17_Chr4g0061181 | 64.641 | 181 | 56 | 2 | 1 | 180 | 1 | 174 | 2.24e-81 | 238 |
| Msa0766850 | MtrunA17_Chr7g0243261 | 49.444 | 180 | 81 | 2 | 1 | 180 | 1 | 170 | 3.96e-59 | 182 |
| Msa0766850 | MtrunA17_Chr4g0005561 | 50.602 | 166 | 79 | 1 | 15 | 180 | 8 | 170 | 5.14e-59 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766850 | AT2G03350.1 | 74.576 | 177 | 43 | 1 | 1 | 177 | 1 | 175 | 3.02e-95 | 274 |
| Msa0766850 | AT5G37070.1 | 49.444 | 180 | 81 | 2 | 1 | 180 | 1 | 170 | 4.14e-61 | 187 |
| Msa0766850 | AT3G08890.1 | 48.889 | 180 | 82 | 2 | 1 | 180 | 1 | 170 | 1.16e-59 | 184 |
| Msa0766850 | AT3G08890.2 | 48.889 | 180 | 82 | 2 | 1 | 180 | 1 | 170 | 1.16e-59 | 184 |
| Msa0766850 | AT5G01610.2 | 48.795 | 166 | 82 | 1 | 15 | 180 | 8 | 170 | 4.85e-58 | 179 |
| Msa0766850 | AT5G01610.1 | 48.795 | 166 | 82 | 1 | 15 | 180 | 8 | 170 | 4.85e-58 | 179 |
| Msa0766850 | AT5G16380.1 | 28.125 | 128 | 88 | 3 | 49 | 174 | 19 | 144 | 3.93e-13 | 65.1 |
| Msa0766850 | AT4G02370.1 | 28.713 | 101 | 68 | 2 | 64 | 163 | 35 | 132 | 2.44e-12 | 62.4 |
| Msa0766850 | AT1G02816.1 | 25.000 | 112 | 78 | 3 | 64 | 172 | 35 | 143 | 3.38e-12 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTAAATGGAAGTTAATT+TGG | 0.164474 | 5_2:-29260596 | Msa0766850:three_prime_UTR |
| TATGAAATAGTATAATTTAT+TGG | 0.168226 | 5_2:-29260707 | Msa0766850:three_prime_UTR |
| TAATTTATTGTTACACTAAA+TGG | 0.190059 | 5_2:-29260608 | Msa0766850:three_prime_UTR |
| ACAACACAAGAACGAGAAAA+AGG | 0.223448 | 5_2:+29263993 | None:intergenic |
| CTTCTCTATATTATATATAT+TGG | 0.242497 | 5_2:-29260648 | Msa0766850:three_prime_UTR |
| GATGTTAGTGAATTCTTCTT+TGG | 0.249782 | 5_2:+29263854 | None:intergenic |
| GTTACAAATCTGATAAGATT+TGG | 0.265998 | 5_2:-29260846 | Msa0766850:CDS |
| ATTGGATATGTTTACATAGA+AGG | 0.272787 | 5_2:-29260689 | Msa0766850:three_prime_UTR |
| TATTGGATGTACTGCAGTTC+TGG | 0.333625 | 5_2:-29260631 | Msa0766850:three_prime_UTR |
| TGAAAACAAAAGTTCTTGTA+TGG | 0.338172 | 5_2:-29260897 | Msa0766850:CDS |
| AAAGTGGCAAGCTTGAAAAT+TGG | 0.343093 | 5_2:-29263906 | Msa0766850:CDS |
| GGGAAAGCTTTCAGCAATAG+AGG | 0.361806 | 5_2:-29260923 | Msa0766850:CDS |
| TTACAAATCTGATAAGATTT+GGG | 0.365699 | 5_2:-29260845 | Msa0766850:CDS |
| GAGTCAAAGGTGTACTTACT+AGG | 0.380524 | 5_2:-29260945 | Msa0766850:CDS |
| AAAAGTTCTTGTATGGGTTA+AGG | 0.386610 | 5_2:-29260890 | Msa0766850:CDS |
| ACATAGAAGGTGTAGGGGTT+AGG | 0.392744 | 5_2:-29260676 | Msa0766850:three_prime_UTR |
| AAATTGGACTTGGAGATTCA+TGG | 0.412387 | 5_2:-29263890 | Msa0766850:CDS |
| TAGTTTGTTGAAAACCCATT+TGG | 0.430521 | 5_2:+29261918 | None:intergenic |
| TGATACTCTAATAGCATCTC+GGG | 0.437935 | 5_2:+29260774 | None:intergenic |
| TTGAACTCTCTGAGGAGATC+TGG | 0.445414 | 5_2:+29261102 | None:intergenic |
| GGTGTATCGTAAGCATCCTT+TGG | 0.469228 | 5_2:+29260796 | None:intergenic |
| TGCATGTGAGGTCAGCTTCA+AGG | 0.469233 | 5_2:-29260995 | Msa0766850:CDS |
| ATGTTTACATAGAAGGTGTA+GGG | 0.472196 | 5_2:-29260682 | Msa0766850:three_prime_UTR |
| CTGTTGAAGAGAAGGCCAAA+TGG | 0.472733 | 5_2:-29261933 | Msa0766850:CDS |
| GAGAGTTCAATTTACCGCTC+GGG | 0.472924 | 5_2:-29261089 | Msa0766850:CDS |
| CTGATACTCTAATAGCATCT+CGG | 0.477645 | 5_2:+29260773 | None:intergenic |
| TGTTGAAGAGAAGGCCAAAT+GGG | 0.480692 | 5_2:-29261932 | Msa0766850:CDS |
| GCAAGCTTGAAAATTGGACT+TGG | 0.490390 | 5_2:-29263900 | Msa0766850:CDS |
| CTCAAGCACTGTTGAAGAGA+AGG | 0.492131 | 5_2:-29261941 | Msa0766850:CDS |
| AGTAAGTACACCTTTGACTC+GGG | 0.494877 | 5_2:+29260948 | None:intergenic |
| GTAGACAATCAGCTTACCCT+TGG | 0.505031 | 5_2:+29261026 | None:intergenic |
| CCCACAGGTAAGCCACAGAA+AGG | 0.506420 | 5_2:-29261129 | Msa0766850:intron |
| AGAGAGTTCAATTTACCGCT+CGG | 0.507282 | 5_2:-29261090 | Msa0766850:CDS |
| GATAAGATTTGGGTTACTGC+TGG | 0.516200 | 5_2:-29260835 | Msa0766850:CDS |
| TGCAACTAACAACACAAAGA+TGG | 0.518039 | 5_2:-29263943 | Msa0766850:exon |
| AGTCAAAGGTGTACTTACTA+GGG | 0.519994 | 5_2:-29260944 | Msa0766850:CDS |
| GAAAACAAAAGTTCTTGTAT+GGG | 0.524444 | 5_2:-29260896 | Msa0766850:CDS |
| TATGTTTACATAGAAGGTGT+AGG | 0.527245 | 5_2:-29260683 | Msa0766850:three_prime_UTR |
| GGAGAAAGCTCTTACTAAAG+TGG | 0.540620 | 5_2:-29263922 | Msa0766850:CDS |
| CGATATGCAACCCGAGTCAA+AGG | 0.562733 | 5_2:-29260958 | Msa0766850:CDS |
| TAGTAAGTACACCTTTGACT+CGG | 0.573895 | 5_2:+29260947 | None:intergenic |
| CTACTTACCATCTGCATGTG+AGG | 0.574237 | 5_2:-29261007 | Msa0766850:CDS |
| CTGCTGGTGTTAAGAAGTCA+AGG | 0.578489 | 5_2:-29260819 | Msa0766850:CDS |
| GTGACAAGTGTGACAGTAGA+GGG | 0.581696 | 5_2:-29260868 | Msa0766850:CDS |
| AGATCTGGTAAACCTTTCTG+TGG | 0.597603 | 5_2:+29261117 | None:intergenic |
| GGAAAGCTTTCAGCAATAGA+GGG | 0.600700 | 5_2:-29260922 | Msa0766850:CDS |
| AAGCTGACCTCACATGCAGA+TGG | 0.613619 | 5_2:+29261000 | None:intergenic |
| GGTGACAAGTGTGACAGTAG+AGG | 0.615714 | 5_2:-29260869 | Msa0766850:CDS |
| TATGAGTTTGACGAAACCAA+GGG | 0.622312 | 5_2:-29261042 | Msa0766850:CDS |
| TTATGAGTTTGACGAAACCA+AGG | 0.622560 | 5_2:-29261043 | Msa0766850:CDS |
| TGTTTACATAGAAGGTGTAG+GGG | 0.639448 | 5_2:-29260681 | Msa0766850:three_prime_UTR |
| TGTTAAGAAGTCAAGGCCAA+AGG | 0.647193 | 5_2:-29260812 | Msa0766850:CDS |
| GTCAAAGGTGTACTTACTAG+GGG | 0.651960 | 5_2:-29260943 | Msa0766850:CDS |
| GCGGTAAATTGAACTCTCTG+AGG | 0.669943 | 5_2:+29261094 | None:intergenic |
| GATACTCTAATAGCATCTCG+GGG | 0.705257 | 5_2:+29260775 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAAATAGTATAATTTAT+TGG | - | chr5_2:29263863-29263882 | Msa0766850:CDS | 10.0% |
| !!! | TTTTGGGTATATTAAAAAAA+TGG | - | chr5_2:29261535-29261554 | Msa0766850:intron | 15.0% |
| !! | CTTCTCTATATTATATATAT+TGG | - | chr5_2:29263922-29263941 | Msa0766850:CDS | 15.0% |
| !! | TAATTTATTGTTACACTAAA+TGG | - | chr5_2:29263962-29263981 | Msa0766850:five_prime_UTR | 15.0% |
| !!! | ATTTTGCAAAACAATTCATT+CGG | - | chr5_2:29261315-29261334 | Msa0766850:intron | 20.0% |
| !!! | TTTTGATGTTTCTTTAGTTT+AGG | - | chr5_2:29261436-29261455 | Msa0766850:intron | 20.0% |
| !!! | TTTGATGTTTCTTTAGTTTA+GGG | - | chr5_2:29261437-29261456 | Msa0766850:intron | 20.0% |
| !!! | TATTAAAAAAATGGCCTTTT+TGG | - | chr5_2:29261544-29261563 | Msa0766850:intron | 20.0% |
| !!! | TTTTTTCCTTTCTAAATCAT+AGG | - | chr5_2:29261637-29261656 | Msa0766850:intron | 20.0% |
| !! | AATAAAAACAGAGATATTAG+AGG | + | chr5_2:29262147-29262166 | None:intergenic | 20.0% |
| !!! | AATATCTCTGTTTTTATTCT+TGG | - | chr5_2:29262149-29262168 | Msa0766850:intron | 20.0% |
| !! | AATATATAGGGAAAAATAGA+GGG | + | chr5_2:29262187-29262206 | None:intergenic | 20.0% |
| !! | AAATATATAGGGAAAAATAG+AGG | + | chr5_2:29262188-29262207 | None:intergenic | 20.0% |
| !! | AGAATTGAGAGAAATATATA+GGG | + | chr5_2:29262199-29262218 | None:intergenic | 20.0% |
| !! | TAGAATTGAGAGAAATATAT+AGG | + | chr5_2:29262200-29262219 | None:intergenic | 20.0% |
| !! | TTCTCAATATTACTGATAAA+AGG | + | chr5_2:29262489-29262508 | None:intergenic | 20.0% |
| !! | ACATGAAAAACTTATTATAG+CGG | + | chr5_2:29262864-29262883 | None:intergenic | 20.0% |
| !! | TTACAAATCTGATAAGATTT+GGG | - | chr5_2:29263725-29263744 | Msa0766850:intron | 20.0% |
| ! | TATTCCTCAAAGATTTGAAT+AGG | - | chr5_2:29260968-29260987 | Msa0766850:CDS | 25.0% |
| !! | AAAATTGATTCCTCTGAAAA+TGG | + | chr5_2:29261015-29261034 | None:intergenic | 25.0% |
| !! | ATTGATTTCGACTTAAAATG+AGG | + | chr5_2:29261297-29261316 | None:intergenic | 25.0% |
| ! | TTCCATAAATGAATATGCAA+TGG | - | chr5_2:29261468-29261487 | Msa0766850:intron | 25.0% |
| !!! | GTAGATAATTTATTTTGTCC+TGG | - | chr5_2:29261680-29261699 | Msa0766850:intron | 25.0% |
| ! | TAAACAATCAATCACATGAT+CGG | + | chr5_2:29261825-29261844 | None:intergenic | 25.0% |
| ! | AATAAAACAGAGAAAAACAG+AGG | + | chr5_2:29262105-29262124 | None:intergenic | 25.0% |
| !!! | TTTTTCTCTGTTTTATTGCT+TGG | - | chr5_2:29262108-29262127 | Msa0766850:intron | 25.0% |
| ! | TTTGATTGATGCAAAATTCT+TGG | + | chr5_2:29262342-29262361 | None:intergenic | 25.0% |
| !! | TTTTGTACAGAGTTGAAAAT+TGG | - | chr5_2:29262388-29262407 | Msa0766850:intron | 25.0% |
| !! | TTTTACTACGCTTTATGATT+CGG | + | chr5_2:29262519-29262538 | None:intergenic | 25.0% |
| !!! | ACAATGTTTTTGCTGATATA+AGG | - | chr5_2:29262586-29262605 | Msa0766850:intron | 25.0% |
| ! | TTTCAACAAACTAAAAGGTA+CGG | - | chr5_2:29262662-29262681 | Msa0766850:intron | 25.0% |
| ! | CATGAAAAACTTATTATAGC+GGG | + | chr5_2:29262863-29262882 | None:intergenic | 25.0% |
| !!! | GAAATAGCAAATTTTAACTC+AGG | + | chr5_2:29263176-29263195 | None:intergenic | 25.0% |
| ! | CAAGACAAGTATTATTTCAA+TGG | - | chr5_2:29263344-29263363 | Msa0766850:intron | 25.0% |
| !! | TCATAACAGATTATGTTTTG+AGG | + | chr5_2:29263513-29263532 | None:intergenic | 25.0% |
| ! | TGAAAACAAAAGTTCTTGTA+TGG | - | chr5_2:29263673-29263692 | Msa0766850:intron | 25.0% |
| ! | GAAAACAAAAGTTCTTGTAT+GGG | - | chr5_2:29263674-29263693 | Msa0766850:intron | 25.0% |
| ! | GTTACAAATCTGATAAGATT+TGG | - | chr5_2:29263724-29263743 | Msa0766850:intron | 25.0% |
| ! | ATTGGATATGTTTACATAGA+AGG | - | chr5_2:29263881-29263900 | Msa0766850:CDS | 25.0% |
| ! | ACACTAAATGGAAGTTAATT+TGG | - | chr5_2:29263974-29263993 | Msa0766850:five_prime_UTR | 25.0% |
| GATGTTAGTGAATTCTTCTT+TGG | + | chr5_2:29260719-29260738 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTTCCCCTTTAATG+TGG | - | chr5_2:29260796-29260815 | Msa0766850:CDS | 30.0% |
| ! | TTTGAAACAACCTTGGATTT+GGG | - | chr5_2:29260904-29260923 | Msa0766850:CDS | 30.0% |
| ATCTCCTATTCAAATCTTTG+AGG | + | chr5_2:29260975-29260994 | None:intergenic | 30.0% | |
| CTAAATTAGTGCACCTAAAT+TGG | - | chr5_2:29261049-29261068 | Msa0766850:CDS | 30.0% | |
| TGATTCCTCTAAACGAATTT+GGG | + | chr5_2:29261149-29261168 | None:intergenic | 30.0% | |
| TTGATTCCTCTAAACGAATT+TGG | + | chr5_2:29261150-29261169 | None:intergenic | 30.0% | |
| ! | AGAGGAATCAAATTGATTCT+TGG | - | chr5_2:29261159-29261178 | Msa0766850:intron | 30.0% |
| AAACAAGCTTAGTATGTGTT+TGG | + | chr5_2:29261364-29261383 | None:intergenic | 30.0% | |
| !!! | ACATACTAAGCTTGTTTTAG+TGG | - | chr5_2:29261367-29261386 | Msa0766850:intron | 30.0% |
| !! | TTCTGTTTTGGATGTGAAAT+TGG | - | chr5_2:29261403-29261422 | Msa0766850:intron | 30.0% |
| !! | TCTGTTTTGGATGTGAAATT+GGG | - | chr5_2:29261404-29261423 | Msa0766850:intron | 30.0% |
| GTCCATTGCATATTCATTTA+TGG | + | chr5_2:29261473-29261492 | None:intergenic | 30.0% | |
| ! | TCTGAAAGATCCAAATTTTC+AGG | + | chr5_2:29261588-29261607 | None:intergenic | 30.0% |
| GTTGTTCCTATGATTTAGAA+AGG | + | chr5_2:29261646-29261665 | None:intergenic | 30.0% | |
| !! | AATGAATGAAGTCATTTTCC+AGG | + | chr5_2:29261701-29261720 | None:intergenic | 30.0% |
| AATTTCATCGAGAGATTACA+AGG | - | chr5_2:29261740-29261759 | Msa0766850:intron | 30.0% | |
| ATTTCATCGAGAGATTACAA+GGG | - | chr5_2:29261741-29261760 | Msa0766850:intron | 30.0% | |
| !!! | TTGTTTGTTTTGAAACTGCA+GGG | + | chr5_2:29261776-29261795 | None:intergenic | 30.0% |
| !!! | ATTGTTTGTTTTGAAACTGC+AGG | + | chr5_2:29261777-29261796 | None:intergenic | 30.0% |
| TCCATGAAGTTACTTCTAAA+TGG | - | chr5_2:29261857-29261876 | Msa0766850:intron | 30.0% | |
| CAAAAAACAGAGAAAACAGA+GGG | + | chr5_2:29262065-29262084 | None:intergenic | 30.0% | |
| AGATATTAGAGGAAAAACAG+AGG | + | chr5_2:29262136-29262155 | None:intergenic | 30.0% | |
| !! | ATTTGTTGTCTACTACTCTA+TGG | - | chr5_2:29262441-29262460 | Msa0766850:intron | 30.0% |
| TAAAAGGCTGATAATTCACT+TGG | + | chr5_2:29262473-29262492 | None:intergenic | 30.0% | |
| !! | TAGTTTGTTGAAAACCCATT+TGG | + | chr5_2:29262655-29262674 | None:intergenic | 30.0% |
| ! | TGGGTTTTCAACAAACTAAA+AGG | - | chr5_2:29262657-29262676 | Msa0766850:intron | 30.0% |
| AGCAGTCTATTTGAATCAAT+TGG | + | chr5_2:29262748-29262767 | None:intergenic | 30.0% | |
| AAGTATCATCATGCTAAACT+AGG | - | chr5_2:29262768-29262787 | Msa0766850:intron | 30.0% | |
| AAGTATCATCATGCTAAACT+AGG | - | chr5_2:29262768-29262787 | Msa0766850:intron | 30.0% | |
| ! | AAAAGTTCTTGTATGGGTTA+AGG | - | chr5_2:29263680-29263699 | Msa0766850:intron | 30.0% |
| ! | TATGTTTACATAGAAGGTGT+AGG | - | chr5_2:29263887-29263906 | Msa0766850:CDS | 30.0% |
| ! | ATGTTTACATAGAAGGTGTA+GGG | - | chr5_2:29263888-29263907 | Msa0766850:CDS | 30.0% |
| CAACACAAGAACGAGAAAAA+GGG | + | chr5_2:29260579-29260598 | None:intergenic | 35.0% | |
| ACAACACAAGAACGAGAAAA+AGG | + | chr5_2:29260580-29260599 | None:intergenic | 35.0% | |
| TGCAACTAACAACACAAAGA+TGG | - | chr5_2:29260627-29260646 | Msa0766850:three_prime_UTR | 35.0% | |
| AAAGTGGCAAGCTTGAAAAT+TGG | - | chr5_2:29260664-29260683 | Msa0766850:three_prime_UTR | 35.0% | |
| AAATTGGACTTGGAGATTCA+TGG | - | chr5_2:29260680-29260699 | Msa0766850:three_prime_UTR | 35.0% | |
| CCAAAAAAGCCACATTAAAG+GGG | + | chr5_2:29260808-29260827 | None:intergenic | 35.0% | |
| CCCAAAAAAGCCACATTAAA+GGG | + | chr5_2:29260809-29260828 | None:intergenic | 35.0% | |
| !!! | CCCTTTAATGTGGCTTTTTT+GGG | - | chr5_2:29260806-29260825 | Msa0766850:CDS | 35.0% |
| ACCCAAAAAAGCCACATTAA+AGG | + | chr5_2:29260810-29260829 | None:intergenic | 35.0% | |
| ATGGAAACTTCCCATGAAAA+GGG | + | chr5_2:29260844-29260863 | None:intergenic | 35.0% | |
| AATGGAAACTTCCCATGAAA+AGG | + | chr5_2:29260845-29260864 | None:intergenic | 35.0% | |
| TTTCATGGGAAGTTTCCATT+TGG | - | chr5_2:29260845-29260864 | Msa0766850:CDS | 35.0% | |
| TTCATGGGAAGTTTCCATTT+GGG | - | chr5_2:29260846-29260865 | Msa0766850:CDS | 35.0% | |
| ! | TTGCTTGTTTGAAACAACCT+TGG | - | chr5_2:29260897-29260916 | Msa0766850:CDS | 35.0% |
| ! | GTTTGAAACAACCTTGGATT+TGG | - | chr5_2:29260903-29260922 | Msa0766850:CDS | 35.0% |
| TAGGAGATTAAGTGTGTGTT+TGG | - | chr5_2:29260987-29261006 | Msa0766850:CDS | 35.0% | |
| TTAGTATGTGTTTGGTTGTG+TGG | + | chr5_2:29261356-29261375 | None:intergenic | 35.0% | |
| ! | TCTCATGGAATGTTCTGTTT+TGG | - | chr5_2:29261391-29261410 | Msa0766850:intron | 35.0% |
| TTCAACACAGACAACCAAAA+AGG | + | chr5_2:29261561-29261580 | None:intergenic | 35.0% | |
| !! | TTTTGGTTGTCTGTGTTGAA+TGG | - | chr5_2:29261561-29261580 | Msa0766850:intron | 35.0% |
| GTTGAATGGACCTGAAAATT+TGG | - | chr5_2:29261575-29261594 | Msa0766850:intron | 35.0% | |
| !!! | TGTTTGTTTTGAAACTGCAG+GGG | + | chr5_2:29261775-29261794 | None:intergenic | 35.0% |
| GCCATTTAGAAGTAACTTCA+TGG | + | chr5_2:29261861-29261880 | None:intergenic | 35.0% | |
| ATATGACATGTAGAGGATCT+TGG | + | chr5_2:29261883-29261902 | None:intergenic | 35.0% | |
| AAGCTACATATGACATGTAG+AGG | + | chr5_2:29261890-29261909 | None:intergenic | 35.0% | |
| GTGTCTATGATATACAAGCA+AGG | - | chr5_2:29261918-29261937 | Msa0766850:CDS | 35.0% | |
| GGAAAATGGCAAAAAAACAG+AGG | + | chr5_2:29262044-29262063 | None:intergenic | 35.0% | |
| GCAAAAAACAGAGAAAACAG+AGG | + | chr5_2:29262066-29262085 | None:intergenic | 35.0% | |
| GAAAAATAGAGGGAAAACAG+AGG | + | chr5_2:29262177-29262196 | None:intergenic | 35.0% | |
| CACTTGTATACAATGTAGTC+AGG | + | chr5_2:29262309-29262328 | None:intergenic | 35.0% | |
| AGTAACACTAACACCAAACA+GGG | + | chr5_2:29262566-29262585 | None:intergenic | 35.0% | |
| TAGTAACACTAACACCAAAC+AGG | + | chr5_2:29262567-29262586 | None:intergenic | 35.0% | |
| GAAAGAATGCATAAACTCAC+TGG | + | chr5_2:29262710-29262729 | None:intergenic | 35.0% | |
| ATTTGAATGTGTCAGCGAAA+GGG | + | chr5_2:29262911-29262930 | None:intergenic | 35.0% | |
| TATTTGAATGTGTCAGCGAA+AGG | + | chr5_2:29262912-29262931 | None:intergenic | 35.0% | |
| CACGAAAAACTTATTATCGC+AGG | + | chr5_2:29263034-29263053 | None:intergenic | 35.0% | |
| ! | ATATAAGAGAAAGTGTGTCG+GGG | + | chr5_2:29263088-29263107 | None:intergenic | 35.0% |
| ! | CATATAAGAGAAAGTGTGTC+GGG | + | chr5_2:29263089-29263108 | None:intergenic | 35.0% |
| ! | GCATATAAGAGAAAGTGTGT+CGG | + | chr5_2:29263090-29263109 | None:intergenic | 35.0% |
| !!! | CAAATTTTAACTCAGGTGCA+TGG | + | chr5_2:29263169-29263188 | None:intergenic | 35.0% |
| TTTAGTCCTTGAAATTGCGA+GGG | + | chr5_2:29263227-29263246 | None:intergenic | 35.0% | |
| ! | TTTTAGTCCTTGAAATTGCG+AGG | + | chr5_2:29263228-29263247 | None:intergenic | 35.0% |
| TTATGAGTTTGACGAAACCA+AGG | - | chr5_2:29263527-29263546 | Msa0766850:intron | 35.0% | |
| TATGAGTTTGACGAAACCAA+GGG | - | chr5_2:29263528-29263547 | Msa0766850:intron | 35.0% | |
| TAGTAAGTACACCTTTGACT+CGG | + | chr5_2:29263626-29263645 | None:intergenic | 35.0% | |
| ! | AGTCAAAGGTGTACTTACTA+GGG | - | chr5_2:29263626-29263645 | Msa0766850:intron | 35.0% |
| TGATACTCTAATAGCATCTC+GGG | + | chr5_2:29263799-29263818 | None:intergenic | 35.0% | |
| CTGATACTCTAATAGCATCT+CGG | + | chr5_2:29263800-29263819 | None:intergenic | 35.0% | |
| ! | TGTTTACATAGAAGGTGTAG+GGG | - | chr5_2:29263889-29263908 | Msa0766850:CDS | 35.0% |
| GGAGAAAGCTCTTACTAAAG+TGG | - | chr5_2:29260648-29260667 | Msa0766850:three_prime_UTR | 40.0% | |
| GCAAGCTTGAAAATTGGACT+TGG | - | chr5_2:29260670-29260689 | Msa0766850:three_prime_UTR | 40.0% | |
| !!! | CCCCTTTAATGTGGCTTTTT+TGG | - | chr5_2:29260805-29260824 | Msa0766850:CDS | 40.0% |
| !! | TGTTAGTCTGACCCTTTTCA+TGG | - | chr5_2:29260830-29260849 | Msa0766850:CDS | 40.0% |
| !! | GTTAGTCTGACCCTTTTCAT+GGG | - | chr5_2:29260831-29260850 | Msa0766850:CDS | 40.0% |
| TCATGGGAAGTTTCCATTTG+GGG | - | chr5_2:29260847-29260866 | Msa0766850:CDS | 40.0% | |
| TAGATCTCTCAAACCCCAAA+TGG | + | chr5_2:29260863-29260882 | None:intergenic | 40.0% | |
| TTGGGGTTTGAGAGATCTAA+AGG | - | chr5_2:29260864-29260883 | Msa0766850:CDS | 40.0% | |
| GGTTTGAGAGATCTAAAGGA+AGG | - | chr5_2:29260868-29260887 | Msa0766850:CDS | 40.0% | |
| AAACAACCTTGGATTTGGGT+TGG | - | chr5_2:29260908-29260927 | Msa0766850:CDS | 40.0% | |
| !! | GTGTTTGGTTCCATTTTCAG+AGG | - | chr5_2:29261002-29261021 | Msa0766850:CDS | 40.0% |
| ATTCTCTCCAGTGCCAATTT+AGG | + | chr5_2:29261065-29261084 | None:intergenic | 40.0% | |
| TCCTCTAAACGAATTTGGGT+TGG | + | chr5_2:29261145-29261164 | None:intergenic | 40.0% | |
| !!! | GCTTGTTTTAGTGGTTCTCA+TGG | - | chr5_2:29261376-29261395 | Msa0766850:intron | 40.0% |
| TGGATGTGAAATTGGGTATC+TGG | - | chr5_2:29261411-29261430 | Msa0766850:intron | 40.0% | |
| GATATACAAGCAAGGTAGTC+AGG | - | chr5_2:29261926-29261945 | Msa0766850:CDS | 40.0% | |
| CAGAGAAAACAGAGGGAAAA+TGG | + | chr5_2:29262058-29262077 | None:intergenic | 40.0% | |
| CAGAGGAAACAGAGGAAAAA+CGG | + | chr5_2:29262088-29262107 | None:intergenic | 40.0% | |
| GAGAAAAACAGAGGAAACAG+AGG | + | chr5_2:29262096-29262115 | None:intergenic | 40.0% | |
| TAAACATGAGGGACGTAACA+CGG | + | chr5_2:29262251-29262270 | None:intergenic | 40.0% | |
| TGTTGAAGAGAAGGCCAAAT+GGG | - | chr5_2:29262638-29262657 | Msa0766850:intron | 40.0% | |
| !!! | GGATGTGTTTTAACCCTAGA+TGG | - | chr5_2:29262683-29262702 | Msa0766850:intron | 40.0% |
| TAAACTCACTGGACCATCTA+GGG | + | chr5_2:29262699-29262718 | None:intergenic | 40.0% | |
| ATAAACTCACTGGACCATCT+AGG | + | chr5_2:29262700-29262719 | None:intergenic | 40.0% | |
| ! | GCAGGTTGTCTAAAATGCAA+AGG | + | chr5_2:29263016-29263035 | None:intergenic | 40.0% |
| TAGCGTACCATAAGTTCCAA+CGG | - | chr5_2:29263283-29263302 | Msa0766850:intron | 40.0% | |
| AGATCTGGTAAACCTTTCTG+TGG | + | chr5_2:29263456-29263475 | None:intergenic | 40.0% | |
| AGAGAGTTCAATTTACCGCT+CGG | - | chr5_2:29263480-29263499 | Msa0766850:intron | 40.0% | |
| AGTAAGTACACCTTTGACTC+GGG | + | chr5_2:29263625-29263644 | None:intergenic | 40.0% | |
| ! | GAGTCAAAGGTGTACTTACT+AGG | - | chr5_2:29263625-29263644 | Msa0766850:intron | 40.0% |
| ! | GTCAAAGGTGTACTTACTAG+GGG | - | chr5_2:29263627-29263646 | Msa0766850:intron | 40.0% |
| GGAAAGCTTTCAGCAATAGA+GGG | - | chr5_2:29263648-29263667 | Msa0766850:intron | 40.0% | |
| ! | GATAAGATTTGGGTTACTGC+TGG | - | chr5_2:29263735-29263754 | Msa0766850:intron | 40.0% |
| TGTTAAGAAGTCAAGGCCAA+AGG | - | chr5_2:29263758-29263777 | Msa0766850:intron | 40.0% | |
| GATACTCTAATAGCATCTCG+GGG | + | chr5_2:29263798-29263817 | None:intergenic | 40.0% | |
| TATTGGATGTACTGCAGTTC+TGG | - | chr5_2:29263939-29263958 | Msa0766850:exon | 40.0% | |
| CAAGTACCAACCCAAATCCA+AGG | + | chr5_2:29260917-29260936 | None:intergenic | 45.0% | |
| !! | CTTGGATTTGGGTTGGTACT+TGG | - | chr5_2:29260915-29260934 | Msa0766850:CDS | 45.0% |
| TAGTGCACCTAAATTGGCAC+TGG | - | chr5_2:29261055-29261074 | Msa0766850:CDS | 45.0% | |
| GCCAACCCAAATTCGTTTAG+AGG | - | chr5_2:29261141-29261160 | Msa0766850:intron | 45.0% | |
| ACCAGAGTGAAGTTGAAGCA+CGG | + | chr5_2:29262004-29262023 | None:intergenic | 45.0% | |
| GCTTCAACTTCACTCTGGTT+CGG | - | chr5_2:29262005-29262024 | Msa0766850:intron | 45.0% | |
| GGTTCGTAAGTAGGATCGAT+AGG | + | chr5_2:29262230-29262249 | None:intergenic | 45.0% | |
| ACGTAACACGGTTCGTAAGT+AGG | + | chr5_2:29262239-29262258 | None:intergenic | 45.0% | |
| AGTTCCTACGTAGGTTCGAT+TGG | + | chr5_2:29262282-29262301 | None:intergenic | 45.0% | |
| GTACAAAAACCGTCCCTGTT+TGG | - | chr5_2:29262550-29262569 | Msa0766850:intron | 45.0% | |
| ACACTAACACCAAACAGGGA+CGG | + | chr5_2:29262562-29262581 | None:intergenic | 45.0% | |
| ! | CTCAAGCACTGTTGAAGAGA+AGG | - | chr5_2:29262629-29262648 | Msa0766850:intron | 45.0% |
| CTGTTGAAGAGAAGGCCAAA+TGG | - | chr5_2:29262637-29262656 | Msa0766850:intron | 45.0% | |
| ! | GCGGGTTGTCTAAAATGCAA+AGG | + | chr5_2:29262845-29262864 | None:intergenic | 45.0% |
| GAAAGGGCTAAGTGTGAATG+AGG | + | chr5_2:29262895-29262914 | None:intergenic | 45.0% | |
| TCACCTACCTCATTCACACT+TGG | - | chr5_2:29262885-29262904 | Msa0766850:intron | 45.0% | |
| GATTGACCCTCGCAATTTCA+AGG | - | chr5_2:29263218-29263237 | Msa0766850:intron | 45.0% | |
| AGTCACACCGTTGGAACTTA+TGG | + | chr5_2:29263293-29263312 | None:intergenic | 45.0% | |
| ATAAGTTCCAACGGTGTGAC+TGG | - | chr5_2:29263292-29263311 | Msa0766850:intron | 45.0% | |
| TTAACAACCAGTCACACCGT+TGG | + | chr5_2:29263302-29263321 | None:intergenic | 45.0% | |
| ! | TTGAACTCTCTGAGGAGATC+TGG | + | chr5_2:29263471-29263490 | None:intergenic | 45.0% |
| GCGGTAAATTGAACTCTCTG+AGG | + | chr5_2:29263479-29263498 | None:intergenic | 45.0% | |
| GAGAGTTCAATTTACCGCTC+GGG | - | chr5_2:29263481-29263500 | Msa0766850:intron | 45.0% | |
| !! | TTTTGAGGAAATAGCCCGAG+CGG | + | chr5_2:29263498-29263517 | None:intergenic | 45.0% |
| GTAGACAATCAGCTTACCCT+TGG | + | chr5_2:29263547-29263566 | None:intergenic | 45.0% | |
| CTACTTACCATCTGCATGTG+AGG | - | chr5_2:29263563-29263582 | Msa0766850:intron | 45.0% | |
| GGGAAAGCTTTCAGCAATAG+AGG | - | chr5_2:29263647-29263666 | Msa0766850:intron | 45.0% | |
| GTGACAAGTGTGACAGTAGA+GGG | - | chr5_2:29263702-29263721 | Msa0766850:intron | 45.0% | |
| ! | CTGCTGGTGTTAAGAAGTCA+AGG | - | chr5_2:29263751-29263770 | Msa0766850:intron | 45.0% |
| GGTGTATCGTAAGCATCCTT+TGG | + | chr5_2:29263777-29263796 | None:intergenic | 45.0% | |
| ! | ACATAGAAGGTGTAGGGGTT+AGG | - | chr5_2:29263894-29263913 | Msa0766850:CDS | 45.0% |
| !!! | AAAAATAGTTTTTTTTTTTT+TGG | - | chr5_2:29261518-29261537 | Msa0766850:intron | 5.0% |
| !!! | AAAATAGTTTTTTTTTTTTT+GGG | - | chr5_2:29261519-29261538 | Msa0766850:intron | 5.0% |
| GAATCAAACCTGAGACCTCG+AGG | - | chr5_2:29261081-29261100 | Msa0766850:CDS | 50.0% | |
| !! | CTAGTATTGGCTTGGGACCT+GGG | + | chr5_2:29261118-29261137 | None:intergenic | 50.0% |
| !! | TGGCCTGCTAGTATTGGCTT+GGG | + | chr5_2:29261125-29261144 | None:intergenic | 50.0% |
| !! | TTGGCCTGCTAGTATTGGCT+TGG | + | chr5_2:29261126-29261145 | None:intergenic | 50.0% |
| !! | TTGGGTTGGCCTGCTAGTAT+TGG | + | chr5_2:29261131-29261150 | None:intergenic | 50.0% |
| GTGAAGTTGAAGCACGGTTG+AGG | + | chr5_2:29261998-29262017 | None:intergenic | 50.0% | |
| ACCGTGCTTCAACTTCACTC+TGG | - | chr5_2:29262000-29262019 | Msa0766850:intron | 50.0% | |
| CGTCCCTCATGTTTACGTTC+CGG | - | chr5_2:29262256-29262275 | Msa0766850:intron | 50.0% | |
| TGGCCGGAACGTAAACATGA+GGG | + | chr5_2:29262262-29262281 | None:intergenic | 50.0% | |
| TTGGCCGGAACGTAAACATG+AGG | + | chr5_2:29262263-29262282 | None:intergenic | 50.0% | |
| TCAGGAACGAGTTCCTACGT+AGG | + | chr5_2:29262291-29262310 | None:intergenic | 50.0% | |
| GGGCTAAGTGTGAATGAGGT+AGG | + | chr5_2:29262891-29262910 | None:intergenic | 50.0% | |
| GAAAGGGCCAAGTGTGAATG+AGG | + | chr5_2:29263066-29263085 | None:intergenic | 50.0% | |
| ! | GAGAAAGTGTGTCGGGGAAA+GGG | + | chr5_2:29263082-29263101 | None:intergenic | 50.0% |
| ! | AGAGAAAGTGTGTCGGGGAA+AGG | + | chr5_2:29263083-29263102 | None:intergenic | 50.0% |
| CCTTTCTGTGGCTTACCTGT+GGG | + | chr5_2:29263444-29263463 | None:intergenic | 50.0% | |
| ACCTTTCTGTGGCTTACCTG+TGG | + | chr5_2:29263445-29263464 | None:intergenic | 50.0% | |
| AAGCTGACCTCACATGCAGA+TGG | + | chr5_2:29263573-29263592 | None:intergenic | 50.0% | |
| TGCATGTGAGGTCAGCTTCA+AGG | - | chr5_2:29263575-29263594 | Msa0766850:intron | 50.0% | |
| CGATATGCAACCCGAGTCAA+AGG | - | chr5_2:29263612-29263631 | Msa0766850:intron | 50.0% | |
| GGTGACAAGTGTGACAGTAG+AGG | - | chr5_2:29263701-29263720 | Msa0766850:intron | 50.0% | |
| TCAAACCTGAGACCTCGAGG+AGG | - | chr5_2:29261084-29261103 | Msa0766850:CDS | 55.0% | |
| !! | GCTAGTATTGGCTTGGGACC+TGG | + | chr5_2:29261119-29261138 | None:intergenic | 55.0% |
| GGTCCCAAGCCAATACTAGC+AGG | - | chr5_2:29261119-29261138 | Msa0766850:CDS | 55.0% | |
| ATCGTGCGATCCTACGTGCT+GGG | + | chr5_2:29261959-29261978 | None:intergenic | 55.0% | |
| CCTACGTAGGTTCGATTGGC+CGG | + | chr5_2:29262278-29262297 | None:intergenic | 55.0% | |
| GGGCCAAGTGTGAATGAGGT+AGG | + | chr5_2:29263062-29263081 | None:intergenic | 55.0% | |
| ! | TGCTCTGAATGCCTTCCCAC+AGG | - | chr5_2:29263426-29263445 | Msa0766850:intron | 55.0% |
| TCTGTGGCTTACCTGTGGGA+AGG | + | chr5_2:29263440-29263459 | None:intergenic | 55.0% | |
| CCCACAGGTAAGCCACAGAA+AGG | - | chr5_2:29263441-29263460 | Msa0766850:intron | 55.0% | |
| GTACTCCTCCTCGAGGTCTC+AGG | + | chr5_2:29261092-29261111 | None:intergenic | 60.0% | |
| ! | TGGGAGTGTACTCCTCCTCG+AGG | + | chr5_2:29261099-29261118 | None:intergenic | 60.0% |
| ! | TCGAGGAGGAGTACACTCCC+AGG | - | chr5_2:29261098-29261117 | Msa0766850:CDS | 60.0% |
| AGGAACGAGTCCCAGCACGT+AGG | - | chr5_2:29261946-29261965 | Msa0766850:CDS | 60.0% | |
| GATCGTGCGATCCTACGTGC+TGG | + | chr5_2:29261960-29261979 | None:intergenic | 60.0% | |
| !! | GAAGCACGGTTGAGGTGCTG+TGG | + | chr5_2:29261990-29262009 | None:intergenic | 60.0% |
| CCGGCCAATCGAACCTACGT+AGG | - | chr5_2:29262275-29262294 | Msa0766850:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 29260560 | 29264032 | 29260560 | ID=Msa0766850;Name=Msa0766850 |
| chr5_2 | mRNA | 29260560 | 29264032 | 29260560 | ID=Msa0766850-mRNA-1;Parent=Msa0766850;Name=Msa0766850-mRNA-1;_AED=0.20;_eAED=0.20;_QI=86|1|1|1|1|1|3|205|180 |
| chr5_2 | exon | 29260560 | 29261144 | 29260560 | ID=Msa0766850-mRNA-1:exon:11173;Parent=Msa0766850-mRNA-1 |
| chr5_2 | exon | 29261914 | 29261968 | 29261914 | ID=Msa0766850-mRNA-1:exon:11172;Parent=Msa0766850-mRNA-1 |
| chr5_2 | exon | 29263839 | 29264032 | 29263839 | ID=Msa0766850-mRNA-1:exon:11171;Parent=Msa0766850-mRNA-1 |
| chr5_2 | five_prime_UTR | 29263947 | 29264032 | 29263947 | ID=Msa0766850-mRNA-1:five_prime_utr;Parent=Msa0766850-mRNA-1 |
| chr5_2 | CDS | 29263839 | 29263946 | 29263839 | ID=Msa0766850-mRNA-1:cds;Parent=Msa0766850-mRNA-1 |
| chr5_2 | CDS | 29261914 | 29261968 | 29261914 | ID=Msa0766850-mRNA-1:cds;Parent=Msa0766850-mRNA-1 |
| chr5_2 | CDS | 29260765 | 29261144 | 29260765 | ID=Msa0766850-mRNA-1:cds;Parent=Msa0766850-mRNA-1 |
| chr5_2 | three_prime_UTR | 29260560 | 29260764 | 29260560 | ID=Msa0766850-mRNA-1:three_prime_utr;Parent=Msa0766850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
