Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727540 | RHN55623.1 | 99.383 | 162 | 1 | 0 | 1 | 162 | 1 | 162 | 1.97e-114 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727540 | sp|Q76EJ0|YABDL_ORYSJ | 67.808 | 146 | 40 | 6 | 9 | 151 | 1 | 142 | 1.49e-57 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727540 | A0A396HT01 | 99.383 | 162 | 1 | 0 | 1 | 162 | 1 | 162 | 9.41e-115 | 331 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0727540 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0727540 | Msa0768850 | 0.874494 | 6.466087e-68 | -8.615850e-47 |
| Msa0727540 | Msa0768900 | 0.890595 | 8.544981e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727540 | MtrunA17_Chr5g0419871 | 99.383 | 162 | 1 | 0 | 1 | 162 | 1 | 162 | 1.81e-118 | 331 |
| Msa0727540 | MtrunA17_Chr4g0063931 | 43.030 | 165 | 65 | 4 | 8 | 155 | 5 | 157 | 2.16e-38 | 129 |
| Msa0727540 | MtrunA17_Chr2g0322221 | 46.784 | 171 | 73 | 6 | 7 | 161 | 1 | 169 | 4.09e-37 | 126 |
| Msa0727540 | MtrunA17_Chr4g0025361 | 44.099 | 161 | 80 | 4 | 7 | 161 | 1 | 157 | 5.23e-37 | 125 |
| Msa0727540 | MtrunA17_Chr4g0011841 | 44.025 | 159 | 62 | 4 | 19 | 155 | 25 | 178 | 8.29e-33 | 116 |
| Msa0727540 | MtrunA17_Chr4g0056521 | 44.785 | 163 | 72 | 3 | 10 | 155 | 12 | 173 | 2.62e-32 | 114 |
| Msa0727540 | MtrunA17_Chr5g0413381 | 40.000 | 155 | 64 | 3 | 17 | 151 | 12 | 157 | 1.77e-30 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727540 | AT1G69180.1 | 64.596 | 161 | 50 | 4 | 1 | 157 | 1 | 158 | 2.77e-55 | 172 |
| Msa0727540 | AT1G08465.1 | 46.875 | 160 | 66 | 5 | 15 | 161 | 6 | 159 | 4.30e-37 | 126 |
| Msa0727540 | AT2G26580.2 | 46.939 | 147 | 65 | 3 | 15 | 155 | 7 | 146 | 5.94e-36 | 122 |
| Msa0727540 | AT2G26580.1 | 46.939 | 147 | 65 | 3 | 15 | 155 | 7 | 146 | 5.94e-36 | 122 |
| Msa0727540 | AT2G45190.1 | 46.429 | 168 | 66 | 7 | 10 | 155 | 17 | 182 | 1.29e-34 | 121 |
| Msa0727540 | AT4G00180.1 | 37.968 | 187 | 78 | 5 | 10 | 161 | 17 | 200 | 1.70e-28 | 105 |
| Msa0727540 | AT1G23420.1 | 36.478 | 159 | 82 | 3 | 18 | 157 | 20 | 178 | 2.12e-25 | 97.4 |
| Msa0727540 | AT1G23420.2 | 36.709 | 158 | 81 | 3 | 19 | 157 | 52 | 209 | 3.89e-25 | 97.4 |
| Msa0727540 | AT4G00180.2 | 33.918 | 171 | 76 | 4 | 26 | 161 | 1 | 169 | 1.33e-19 | 82.0 |
| Msa0727540 | AT2G45190.2 | 70.909 | 55 | 15 | 1 | 101 | 155 | 65 | 118 | 3.66e-19 | 79.7 |
Find 34 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGGTAACTTTCTCTTCA+TGG | 0.253602 | 5_1:-30279261 | None:intergenic |
| ACAACAAATGGCGGTGGTCT+AGG | 0.360978 | 5_1:-30280046 | None:intergenic |
| TGCTTACGTTTGACAACAAA+TGG | 0.370125 | 5_1:-30280058 | None:intergenic |
| CAACAAATGGCGGTGGTCTA+GGG | 0.442200 | 5_1:-30280045 | None:intergenic |
| GGAAGACGGTGCTTCTTCTC+AGG | 0.456267 | 5_1:-30280250 | None:intergenic |
| ATTGCACTTACTTCATGAAA+CGG | 0.472131 | 5_1:-30280285 | None:intergenic |
| TGATCACACCCTCAGTCTCC+AGG | 0.486490 | 5_1:+30279738 | Msa0727540:CDS |
| AGAGAAAGTTACCATGGACT+TGG | 0.516644 | 5_1:+30279267 | Msa0727540:CDS |
| CACTGAAAGCTTCTCGATGT+GGG | 0.523718 | 5_1:-30280683 | None:intergenic |
| TTTGGAACTTGGTGGTCTTG+TGG | 0.524145 | 5_1:-30279704 | None:intergenic |
| GCTTCTCGATGTGGGATCTG+AGG | 0.524810 | 5_1:-30280675 | None:intergenic |
| CCCTAATAAGAAAATAAAAG+AGG | 0.527545 | 5_1:-30280735 | None:intergenic |
| CTTCTCGATGTGGGATCTGA+GGG | 0.529903 | 5_1:-30280674 | None:intergenic |
| ATGAAACGGTTGTATGCAGA+TGG | 0.547267 | 5_1:-30280271 | None:intergenic |
| GCACTGAAAGCTTCTCGATG+TGG | 0.561704 | 5_1:-30280684 | None:intergenic |
| TCGATGTGGGATCTGAGGGT+TGG | 0.564009 | 5_1:-30280670 | None:intergenic |
| ATTATTGAACCTGGAGACTG+AGG | 0.580682 | 5_1:-30279747 | None:intergenic |
| TAACAGAGGTGTTGATCAGA+TGG | 0.588546 | 5_1:-30279295 | None:intergenic |
| AGTGACTCAGTTGATGTAGT+TGG | 0.590905 | 5_1:-30280019 | None:intergenic |
| AACAAATGGCGGTGGTCTAG+GGG | 0.595027 | 5_1:-30280044 | None:intergenic |
| GTTGGTGAAGAAGAAGATGA+TGG | 0.609575 | 5_1:-30280001 | None:intergenic |
| CGTTTGACAACAAATGGCGG+TGG | 0.615312 | 5_1:-30280052 | None:intergenic |
| AGATGGTGGAACCAAGTCCA+TGG | 0.626957 | 5_1:-30279278 | None:intergenic |
| CCATGAAGAGAAAGTTACCA+TGG | 0.629385 | 5_1:+30279261 | Msa0727540:CDS |
| GTATCTAGCAGCCTCTTGCA+TGG | 0.634316 | 5_1:-30279637 | None:intergenic |
| GGTTGTATGCAGATGGAAGA+CGG | 0.643999 | 5_1:-30280264 | None:intergenic |
| GTGAAGAAGAAGATGATGGT+TGG | 0.655028 | 5_1:-30279997 | None:intergenic |
| CAGAGGTGTTGATCAGATGG+TGG | 0.661444 | 5_1:-30279292 | None:intergenic |
| AGGTTGGCATACCATGCAAG+AGG | 0.666035 | 5_1:+30279626 | Msa0727540:intron |
| TTATTGAACCTGGAGACTGA+GGG | 0.671255 | 5_1:-30279746 | None:intergenic |
| TTACGTTTGACAACAAATGG+CGG | 0.678472 | 5_1:-30280055 | None:intergenic |
| GATACTGTGACAGTGAAGTG+TGG | 0.709816 | 5_1:+30279655 | Msa0727540:CDS |
| AGTTGCAACGAACGTAACAG+AGG | 0.710301 | 5_1:-30279309 | None:intergenic |
| GTCTTGTGGTGAGAAAAGAG+AGG | 0.744847 | 5_1:-30279690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTAATTAATAAAA+AGG | - | chr5_1:30279913-30279932 | None:intergenic | 0.0% |
| !! | TAATTAATTAATTAATAAAA+AGG | - | chr5_1:30279913-30279932 | None:intergenic | 0.0% |
| !! | TGATATATGAATAATATTAA+AGG | - | chr5_1:30279369-30279388 | None:intergenic | 10.0% |
| !!! | TAAATTTTTCTAAAATATGT+AGG | + | chr5_1:30279581-30279600 | Msa0727540:intron | 10.0% |
| !!! | AAATTTTTCTAAAATATGTA+GGG | + | chr5_1:30279582-30279601 | Msa0727540:intron | 10.0% |
| !!! | TATAGTATATATTTTAAACA+GGG | - | chr5_1:30280425-30280444 | None:intergenic | 10.0% |
| !! | TGATATATGAATAATATTAA+AGG | - | chr5_1:30279369-30279388 | None:intergenic | 10.0% |
| !!! | TAAATTTTTCTAAAATATGT+AGG | + | chr5_1:30279581-30279600 | Msa0727540:intron | 10.0% |
| !!! | AAATTTTTCTAAAATATGTA+GGG | + | chr5_1:30279582-30279601 | Msa0727540:intron | 10.0% |
| !!! | TATAGTATATATTTTAAACA+GGG | - | chr5_1:30280425-30280444 | None:intergenic | 10.0% |
| !!! | TTTTTTATTAGCTACATATA+TGG | + | chr5_1:30279535-30279554 | Msa0727540:intron | 15.0% |
| !!! | GTATAGTATATATTTTAAAC+AGG | - | chr5_1:30280426-30280445 | None:intergenic | 15.0% |
| !! | CTAAAATTTCTCTTATAAAT+AGG | - | chr5_1:30280462-30280481 | None:intergenic | 15.0% |
| !!! | ATAAAAAATGCAAACATTTT+TGG | - | chr5_1:30280715-30280734 | None:intergenic | 15.0% |
| !!! | TTTTTTATTAGCTACATATA+TGG | + | chr5_1:30279535-30279554 | Msa0727540:intron | 15.0% |
| !!! | GTATAGTATATATTTTAAAC+AGG | - | chr5_1:30280426-30280445 | None:intergenic | 15.0% |
| !! | CTAAAATTTCTCTTATAAAT+AGG | - | chr5_1:30280462-30280481 | None:intergenic | 15.0% |
| !!! | ATAAAAAATGCAAACATTTT+TGG | - | chr5_1:30280715-30280734 | None:intergenic | 15.0% |
| !! | TTTAATACTGTCTCTAAATT+TGG | + | chr5_1:30279496-30279515 | Msa0727540:intron | 20.0% |
| !!! | CATCTATATTTTTTGTTTTG+AGG | + | chr5_1:30279808-30279827 | Msa0727540:intron | 20.0% |
| !!! | ATGATGAGTTTTATATGTAT+TGG | + | chr5_1:30279886-30279905 | Msa0727540:intron | 20.0% |
| !!! | ATATATTTTAAACAGGGTAA+GGG | - | chr5_1:30280419-30280438 | None:intergenic | 20.0% |
| !!! | TATATATTTTAAACAGGGTA+AGG | - | chr5_1:30280420-30280439 | None:intergenic | 20.0% |
| !! | TCAACAAAAATTGATGTATT+TGG | + | chr5_1:30280482-30280501 | Msa0727540:intron | 20.0% |
| !! | TTTAATACTGTCTCTAAATT+TGG | + | chr5_1:30279496-30279515 | Msa0727540:intron | 20.0% |
| !!! | CATCTATATTTTTTGTTTTG+AGG | + | chr5_1:30279808-30279827 | Msa0727540:intron | 20.0% |
| !!! | ATGATGAGTTTTATATGTAT+TGG | + | chr5_1:30279886-30279905 | Msa0727540:intron | 20.0% |
| !!! | ATATATTTTAAACAGGGTAA+GGG | - | chr5_1:30280419-30280438 | None:intergenic | 20.0% |
| !!! | TATATATTTTAAACAGGGTA+AGG | - | chr5_1:30280420-30280439 | None:intergenic | 20.0% |
| !! | TCAACAAAAATTGATGTATT+TGG | + | chr5_1:30280482-30280501 | Msa0727540:intron | 20.0% |
| ! | CTAAACAAAATTATTGAACC+TGG | - | chr5_1:30279759-30279778 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | - | chr5_1:30280457-30280476 | None:intergenic | 25.0% |
| ! | CTCAACTTTCTCTTATAAAT+AGG | + | chr5_1:30280541-30280560 | Msa0727540:intron | 25.0% |
| ! | CTAAACAAAATTATTGAACC+TGG | - | chr5_1:30279759-30279778 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | - | chr5_1:30280457-30280476 | None:intergenic | 25.0% |
| ! | CTCAACTTTCTCTTATAAAT+AGG | + | chr5_1:30280541-30280560 | Msa0727540:intron | 25.0% |
| ! | AGTTAACAAGTTGAGAATGA+TGG | - | chr5_1:30279397-30279416 | None:intergenic | 30.0% |
| CTTCGTCTATAATTTCGTAT+AGG | - | chr5_1:30279469-30279488 | None:intergenic | 30.0% | |
| !! | TTCTAAAATATGTAGGGTTG+TGG | + | chr5_1:30279588-30279607 | Msa0727540:intron | 30.0% |
| !! | TGTGGTTTGTTATGTTATGT+AGG | + | chr5_1:30279606-30279625 | Msa0727540:intron | 30.0% |
| !! | GTTTGTTATGTTATGTAGGT+TGG | + | chr5_1:30279610-30279629 | Msa0727540:intron | 30.0% |
| !!! | ACAGTTTGATTTTTGGAACT+TGG | - | chr5_1:30279718-30279737 | None:intergenic | 30.0% |
| !! | GTGATCAACAGTTTGATTTT+TGG | - | chr5_1:30279725-30279744 | None:intergenic | 30.0% |
| !! | AGAATACTTTTGTTTGTAGC+AGG | + | chr5_1:30279952-30279971 | Msa0727540:intron | 30.0% |
| !! | GAATACTTTTGTTTGTAGCA+GGG | + | chr5_1:30279953-30279972 | Msa0727540:intron | 30.0% |
| !! | AATACTTTTGTTTGTAGCAG+GGG | + | chr5_1:30279954-30279973 | Msa0727540:intron | 30.0% |
| TTAGAGAGTAATGGTGAAAA+GGG | - | chr5_1:30280085-30280104 | None:intergenic | 30.0% | |
| GATATTTCCTTAGAGAGTAA+TGG | - | chr5_1:30280094-30280113 | None:intergenic | 30.0% | |
| ATTGCACTTACTTCATGAAA+CGG | - | chr5_1:30280288-30280307 | None:intergenic | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | + | chr5_1:30280546-30280565 | Msa0727540:intron | 30.0% | |
| !! | ATACTTTTTATCTGTCAGAG+AGG | + | chr5_1:30280626-30280645 | Msa0727540:intron | 30.0% |
| ! | AGTTAACAAGTTGAGAATGA+TGG | - | chr5_1:30279397-30279416 | None:intergenic | 30.0% |
| CTTCGTCTATAATTTCGTAT+AGG | - | chr5_1:30279469-30279488 | None:intergenic | 30.0% | |
| !! | TTCTAAAATATGTAGGGTTG+TGG | + | chr5_1:30279588-30279607 | Msa0727540:intron | 30.0% |
| !! | TGTGGTTTGTTATGTTATGT+AGG | + | chr5_1:30279606-30279625 | Msa0727540:intron | 30.0% |
| !! | GTTTGTTATGTTATGTAGGT+TGG | + | chr5_1:30279610-30279629 | Msa0727540:intron | 30.0% |
| !!! | ACAGTTTGATTTTTGGAACT+TGG | - | chr5_1:30279718-30279737 | None:intergenic | 30.0% |
| !! | GTGATCAACAGTTTGATTTT+TGG | - | chr5_1:30279725-30279744 | None:intergenic | 30.0% |
| !! | AGAATACTTTTGTTTGTAGC+AGG | + | chr5_1:30279952-30279971 | Msa0727540:intron | 30.0% |
| !! | GAATACTTTTGTTTGTAGCA+GGG | + | chr5_1:30279953-30279972 | Msa0727540:intron | 30.0% |
| !! | AATACTTTTGTTTGTAGCAG+GGG | + | chr5_1:30279954-30279973 | Msa0727540:intron | 30.0% |
| TTAGAGAGTAATGGTGAAAA+GGG | - | chr5_1:30280085-30280104 | None:intergenic | 30.0% | |
| GATATTTCCTTAGAGAGTAA+TGG | - | chr5_1:30280094-30280113 | None:intergenic | 30.0% | |
| ATTGCACTTACTTCATGAAA+CGG | - | chr5_1:30280288-30280307 | None:intergenic | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | + | chr5_1:30280546-30280565 | Msa0727540:intron | 30.0% | |
| !! | ATACTTTTTATCTGTCAGAG+AGG | + | chr5_1:30280626-30280645 | Msa0727540:intron | 30.0% |
| ! | AACAAGTTGAGAATGATGGA+TGG | - | chr5_1:30279393-30279412 | None:intergenic | 35.0% |
| !!! | GTTTGATTTTTGGAACTTGG+TGG | - | chr5_1:30279715-30279734 | None:intergenic | 35.0% |
| GGGATTTACAGTAGCAAAAA+AGG | + | chr5_1:30279974-30279993 | Msa0727540:CDS | 35.0% | |
| TTACGTTTGACAACAAATGG+CGG | - | chr5_1:30280058-30280077 | None:intergenic | 35.0% | |
| TGCTTACGTTTGACAACAAA+TGG | - | chr5_1:30280061-30280080 | None:intergenic | 35.0% | |
| CTTAGAGAGTAATGGTGAAA+AGG | - | chr5_1:30280086-30280105 | None:intergenic | 35.0% | |
| ! | CTTTTCACCATTACTCTCTA+AGG | + | chr5_1:30280084-30280103 | Msa0727540:intron | 35.0% |
| AACCAACCATAACTACAAGA+TGG | + | chr5_1:30280378-30280397 | Msa0727540:intron | 35.0% | |
| TACCATCTTGTAGTTATGGT+TGG | - | chr5_1:30280383-30280402 | None:intergenic | 35.0% | |
| GTGTTACCATCTTGTAGTTA+TGG | - | chr5_1:30280387-30280406 | None:intergenic | 35.0% | |
| ATATACTATACTACTCCCTC+CGG | + | chr5_1:30280435-30280454 | Msa0727540:intron | 35.0% | |
| AGTAAACTATATACTCCCTC+CGG | - | chr5_1:30280568-30280587 | None:intergenic | 35.0% | |
| ! | AACAAGTTGAGAATGATGGA+TGG | - | chr5_1:30279393-30279412 | None:intergenic | 35.0% |
| !!! | GTTTGATTTTTGGAACTTGG+TGG | - | chr5_1:30279715-30279734 | None:intergenic | 35.0% |
| GGGATTTACAGTAGCAAAAA+AGG | + | chr5_1:30279974-30279993 | Msa0727540:CDS | 35.0% | |
| TTACGTTTGACAACAAATGG+CGG | - | chr5_1:30280058-30280077 | None:intergenic | 35.0% | |
| TGCTTACGTTTGACAACAAA+TGG | - | chr5_1:30280061-30280080 | None:intergenic | 35.0% | |
| CTTAGAGAGTAATGGTGAAA+AGG | - | chr5_1:30280086-30280105 | None:intergenic | 35.0% | |
| ! | CTTTTCACCATTACTCTCTA+AGG | + | chr5_1:30280084-30280103 | Msa0727540:intron | 35.0% |
| AACCAACCATAACTACAAGA+TGG | + | chr5_1:30280378-30280397 | Msa0727540:intron | 35.0% | |
| TACCATCTTGTAGTTATGGT+TGG | - | chr5_1:30280383-30280402 | None:intergenic | 35.0% | |
| GTGTTACCATCTTGTAGTTA+TGG | - | chr5_1:30280387-30280406 | None:intergenic | 35.0% | |
| ATATACTATACTACTCCCTC+CGG | + | chr5_1:30280435-30280454 | Msa0727540:intron | 35.0% | |
| AGTAAACTATATACTCCCTC+CGG | - | chr5_1:30280568-30280587 | None:intergenic | 35.0% | |
| CCATGGTAACTTTCTCTTCA+TGG | - | chr5_1:30279264-30279283 | None:intergenic | 40.0% | |
| CCATGAAGAGAAAGTTACCA+TGG | + | chr5_1:30279261-30279280 | Msa0727540:CDS | 40.0% | |
| AGAGAAAGTTACCATGGACT+TGG | + | chr5_1:30279267-30279286 | Msa0727540:CDS | 40.0% | |
| !! | TAACAGAGGTGTTGATCAGA+TGG | - | chr5_1:30279298-30279317 | None:intergenic | 40.0% |
| GGTGAAGTTTACATACAGCT+AGG | - | chr5_1:30279348-30279367 | None:intergenic | 40.0% | |
| TTATTGAACCTGGAGACTGA+GGG | - | chr5_1:30279749-30279768 | None:intergenic | 40.0% | |
| ATTATTGAACCTGGAGACTG+AGG | - | chr5_1:30279750-30279769 | None:intergenic | 40.0% | |
| ! | GTGAAGAAGAAGATGATGGT+TGG | - | chr5_1:30280000-30280019 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGAAGAAGATGA+TGG | - | chr5_1:30280004-30280023 | None:intergenic | 40.0% |
| ! | AGTGACTCAGTTGATGTAGT+TGG | - | chr5_1:30280022-30280041 | None:intergenic | 40.0% |
| ATGAAACGGTTGTATGCAGA+TGG | - | chr5_1:30280274-30280293 | None:intergenic | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr5_1:30280550-30280569 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr5_1:30280549-30280568 | None:intergenic | 40.0% | |
| TCAACAAAAGTCGATGGATC+TGG | - | chr5_1:30280521-30280540 | None:intergenic | 40.0% | |
| GTTGAGTCAACAAAAGTCGA+TGG | - | chr5_1:30280527-30280546 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr5_1:30280549-30280568 | Msa0727540:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr5_1:30280550-30280569 | Msa0727540:intron | 40.0% | |
| CCATGGTAACTTTCTCTTCA+TGG | - | chr5_1:30279264-30279283 | None:intergenic | 40.0% | |
| CCATGAAGAGAAAGTTACCA+TGG | + | chr5_1:30279261-30279280 | Msa0727540:CDS | 40.0% | |
| AGAGAAAGTTACCATGGACT+TGG | + | chr5_1:30279267-30279286 | Msa0727540:CDS | 40.0% | |
| !! | TAACAGAGGTGTTGATCAGA+TGG | - | chr5_1:30279298-30279317 | None:intergenic | 40.0% |
| GGTGAAGTTTACATACAGCT+AGG | - | chr5_1:30279348-30279367 | None:intergenic | 40.0% | |
| TTATTGAACCTGGAGACTGA+GGG | - | chr5_1:30279749-30279768 | None:intergenic | 40.0% | |
| ATTATTGAACCTGGAGACTG+AGG | - | chr5_1:30279750-30279769 | None:intergenic | 40.0% | |
| ! | GTGAAGAAGAAGATGATGGT+TGG | - | chr5_1:30280000-30280019 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGAAGAAGATGA+TGG | - | chr5_1:30280004-30280023 | None:intergenic | 40.0% |
| ! | AGTGACTCAGTTGATGTAGT+TGG | - | chr5_1:30280022-30280041 | None:intergenic | 40.0% |
| ATGAAACGGTTGTATGCAGA+TGG | - | chr5_1:30280274-30280293 | None:intergenic | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr5_1:30280550-30280569 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr5_1:30280549-30280568 | None:intergenic | 40.0% | |
| TCAACAAAAGTCGATGGATC+TGG | - | chr5_1:30280521-30280540 | None:intergenic | 40.0% | |
| GTTGAGTCAACAAAAGTCGA+TGG | - | chr5_1:30280527-30280546 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr5_1:30280549-30280568 | Msa0727540:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr5_1:30280550-30280569 | Msa0727540:intron | 40.0% | |
| AGTTGCAACGAACGTAACAG+AGG | - | chr5_1:30279312-30279331 | None:intergenic | 45.0% | |
| GATACTGTGACAGTGAAGTG+TGG | + | chr5_1:30279655-30279674 | Msa0727540:CDS | 45.0% | |
| GTCTTGTGGTGAGAAAAGAG+AGG | - | chr5_1:30279693-30279712 | None:intergenic | 45.0% | |
| ! | TTTGGAACTTGGTGGTCTTG+TGG | - | chr5_1:30279707-30279726 | None:intergenic | 45.0% |
| GGTTGTATGCAGATGGAAGA+CGG | - | chr5_1:30280267-30280286 | None:intergenic | 45.0% | |
| CACTGAAAGCTTCTCGATGT+GGG | - | chr5_1:30280686-30280705 | None:intergenic | 45.0% | |
| AGTTGCAACGAACGTAACAG+AGG | - | chr5_1:30279312-30279331 | None:intergenic | 45.0% | |
| GATACTGTGACAGTGAAGTG+TGG | + | chr5_1:30279655-30279674 | Msa0727540:CDS | 45.0% | |
| GTCTTGTGGTGAGAAAAGAG+AGG | - | chr5_1:30279693-30279712 | None:intergenic | 45.0% | |
| ! | TTTGGAACTTGGTGGTCTTG+TGG | - | chr5_1:30279707-30279726 | None:intergenic | 45.0% |
| GGTTGTATGCAGATGGAAGA+CGG | - | chr5_1:30280267-30280286 | None:intergenic | 45.0% | |
| CACTGAAAGCTTCTCGATGT+GGG | - | chr5_1:30280686-30280705 | None:intergenic | 45.0% | |
| !! | AGATGGTGGAACCAAGTCCA+TGG | - | chr5_1:30279281-30279300 | None:intergenic | 50.0% |
| !! | CAGAGGTGTTGATCAGATGG+TGG | - | chr5_1:30279295-30279314 | None:intergenic | 50.0% |
| AGGTTGGCATACCATGCAAG+AGG | + | chr5_1:30279626-30279645 | Msa0727540:intron | 50.0% | |
| GTATCTAGCAGCCTCTTGCA+TGG | - | chr5_1:30279640-30279659 | None:intergenic | 50.0% | |
| AACAAATGGCGGTGGTCTAG+GGG | - | chr5_1:30280047-30280066 | None:intergenic | 50.0% | |
| CAACAAATGGCGGTGGTCTA+GGG | - | chr5_1:30280048-30280067 | None:intergenic | 50.0% | |
| ACAACAAATGGCGGTGGTCT+AGG | - | chr5_1:30280049-30280068 | None:intergenic | 50.0% | |
| CGTTTGACAACAAATGGCGG+TGG | - | chr5_1:30280055-30280074 | None:intergenic | 50.0% | |
| CTTCTCGATGTGGGATCTGA+GGG | - | chr5_1:30280677-30280696 | None:intergenic | 50.0% | |
| GCACTGAAAGCTTCTCGATG+TGG | - | chr5_1:30280687-30280706 | None:intergenic | 50.0% | |
| !! | AGATGGTGGAACCAAGTCCA+TGG | - | chr5_1:30279281-30279300 | None:intergenic | 50.0% |
| !! | CAGAGGTGTTGATCAGATGG+TGG | - | chr5_1:30279295-30279314 | None:intergenic | 50.0% |
| AGGTTGGCATACCATGCAAG+AGG | + | chr5_1:30279626-30279645 | Msa0727540:intron | 50.0% | |
| GTATCTAGCAGCCTCTTGCA+TGG | - | chr5_1:30279640-30279659 | None:intergenic | 50.0% | |
| AACAAATGGCGGTGGTCTAG+GGG | - | chr5_1:30280047-30280066 | None:intergenic | 50.0% | |
| CAACAAATGGCGGTGGTCTA+GGG | - | chr5_1:30280048-30280067 | None:intergenic | 50.0% | |
| ACAACAAATGGCGGTGGTCT+AGG | - | chr5_1:30280049-30280068 | None:intergenic | 50.0% | |
| CGTTTGACAACAAATGGCGG+TGG | - | chr5_1:30280055-30280074 | None:intergenic | 50.0% | |
| CTTCTCGATGTGGGATCTGA+GGG | - | chr5_1:30280677-30280696 | None:intergenic | 50.0% | |
| GCACTGAAAGCTTCTCGATG+TGG | - | chr5_1:30280687-30280706 | None:intergenic | 50.0% | |
| TGATCACACCCTCAGTCTCC+AGG | + | chr5_1:30279738-30279757 | Msa0727540:CDS | 55.0% | |
| GGAAGACGGTGCTTCTTCTC+AGG | - | chr5_1:30280253-30280272 | None:intergenic | 55.0% | |
| TCGATGTGGGATCTGAGGGT+TGG | - | chr5_1:30280673-30280692 | None:intergenic | 55.0% | |
| GCTTCTCGATGTGGGATCTG+AGG | - | chr5_1:30280678-30280697 | None:intergenic | 55.0% | |
| TGATCACACCCTCAGTCTCC+AGG | + | chr5_1:30279738-30279757 | Msa0727540:CDS | 55.0% | |
| GGAAGACGGTGCTTCTTCTC+AGG | - | chr5_1:30280253-30280272 | None:intergenic | 55.0% | |
| TCGATGTGGGATCTGAGGGT+TGG | - | chr5_1:30280673-30280692 | None:intergenic | 55.0% | |
| GCTTCTCGATGTGGGATCTG+AGG | - | chr5_1:30280678-30280697 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 30279256 | 30280755 | 30279256 | ID=Msa0727540;Name=Msa0727540 |
| chr5_1 | mRNA | 30279256 | 30280755 | 30279256 | ID=Msa0727540-mRNA-1;Parent=Msa0727540;Name=Msa0727540-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0|0|1|1|1|5|0|162 |
| chr5_1 | exon | 30279256 | 30279351 | 30279256 | ID=Msa0727540-mRNA-1:exon:10202;Parent=Msa0727540-mRNA-1 |
| chr5_1 | exon | 30279628 | 30279759 | 30279628 | ID=Msa0727540-mRNA-1:exon:10203;Parent=Msa0727540-mRNA-1 |
| chr5_1 | exon | 30279974 | 30280073 | 30279974 | ID=Msa0727540-mRNA-1:exon:10204;Parent=Msa0727540-mRNA-1 |
| chr5_1 | exon | 30280248 | 30280296 | 30280248 | ID=Msa0727540-mRNA-1:exon:10205;Parent=Msa0727540-mRNA-1 |
| chr5_1 | exon | 30280644 | 30280755 | 30280644 | ID=Msa0727540-mRNA-1:exon:10206;Parent=Msa0727540-mRNA-1 |
| chr5_1 | CDS | 30279256 | 30279351 | 30279256 | ID=Msa0727540-mRNA-1:cds;Parent=Msa0727540-mRNA-1 |
| chr5_1 | CDS | 30279628 | 30279759 | 30279628 | ID=Msa0727540-mRNA-1:cds;Parent=Msa0727540-mRNA-1 |
| chr5_1 | CDS | 30279974 | 30280073 | 30279974 | ID=Msa0727540-mRNA-1:cds;Parent=Msa0727540-mRNA-1 |
| chr5_1 | CDS | 30280248 | 30280296 | 30280248 | ID=Msa0727540-mRNA-1:cds;Parent=Msa0727540-mRNA-1 |
| chr5_1 | CDS | 30280644 | 30280755 | 30280644 | ID=Msa0727540-mRNA-1:cds;Parent=Msa0727540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
