AlfalfaGEDB | Msa0768900

M. sativa cultivar zhongmu-4 / Msa0768900

KEGG: -
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010254 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048479 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF04690.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0768900	sp\|Q76EJ0\|YABDL_ORYSJ	64.228	123	37	6	9	128	1	119	1.09e-42	142

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0768900	A0A396HT01	99.219	128	1	0	1	128	1	128	1.02e-87	262

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TFs/TRs:

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Gene ID	Type	Classification
Msa0768900	TF	C2C2-YABBY

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0727540	Msa0768900	0.890595	8.544981e-74	-8.615850e-47
Msa0768850	Msa0768900	0.982285	1.061506e-154	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0768900	MtrunA17_Chr5g0419871	99.219	128	1	0	1	128	1	128	1.96e-91	262
Msa0768900	MtrunA17_Chr4g0063931	36.957	138	58	4	8	128	5	130	3.06e-24	92.4
Msa0768900	MtrunA17_Chr4g0025361	39.062	128	68	4	7	128	1	124	1.23e-22	87.8
Msa0768900	MtrunA17_Chr2g0322221	42.754	138	61	6	7	128	1	136	1.93e-22	87.8
Msa0768900	MtrunA17_Chr4g0056521	38.971	136	65	3	10	128	12	146	1.83e-18	77.8
Msa0768900	MtrunA17_Chr4g0011841	37.879	132	55	4	19	128	25	151	4.00e-18	77.0
Msa0768900	MtrunA17_Chr5g0413381	37.398	123	66	2	17	128	12	134	4.90e-18	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0768900	AT1G69180.1	62.121	132	43	4	1	128	1	129	2.37e-38	128
Msa0768900	AT1G08465.1	42.308	130	56	5	12	128	3	126	1.89e-22	87.8
Msa0768900	AT2G26580.2	40.833	120	58	3	15	128	7	119	8.64e-22	85.5
Msa0768900	AT2G26580.1	40.833	120	58	3	15	128	7	119	8.64e-22	85.5
Msa0768900	AT2G45190.1	40.426	141	60	7	10	128	17	155	1.04e-19	81.6
Msa0768900	AT1G23420.1	31.538	130	70	3	18	128	20	149	3.19e-13	64.7
Msa0768900	AT1G23420.2	31.783	129	69	3	19	128	52	180	4.45e-13	64.7
Msa0768900	AT4G00180.1	32.468	154	66	5	10	128	17	167	6.35e-13	63.9

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Find 29 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAATGGCGGTGGTCTAG+GGG	0.595027	5_2:-35842097	None:intergenic
ACAACAAATGGCGGTGGTCT+AGG	0.360978	5_2:-35842099	None:intergenic
AGAGAAAGTTACCATGGACT+TGG	0.516644	5_2:+35841322	Msa0768900:CDS
AGATGGTGGAACCAAGTCCA+TGG	0.626957	5_2:-35841333	None:intergenic
AGGTTGGCATACCATGCAAG+AGG	0.666035	5_2:+35841680	Msa0768900:intron
AGTGACTCAGTTGATGTAGT+TGG	0.590905	5_2:-35842072	None:intergenic
AGTTGCAACGAACGTAACAG+AGG	0.710301	5_2:-35841364	None:intergenic
ATGAAACGGTTGTATGCAGA+TGG	0.547267	5_2:-35842313	None:intergenic
ATTATTGAACCTGGAGACTG+AGG	0.580682	5_2:-35841801	None:intergenic
ATTGCACTTACTTCATGAAA+CGG	0.485516	5_2:-35842327	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCGTCTATAATTTCGTAT+AGG	-	chr5_2:35841524-35841543	None:intergenic	30.0%
TTAGAGAGTAATGGTGAAAA+GGG	-	chr5_2:35842138-35842157	None:intergenic	30.0%
GATATTTCCTTAGAGAGTAA+TGG	-	chr5_2:35842147-35842166	None:intergenic	30.0%
ATTGCACTTACTTCATGAAA+CGG	-	chr5_2:35842330-35842349	None:intergenic	30.0%
CTTTCTCTTATAAATAGGAC+CGG	+	chr5_2:35842593-35842612	Msa0768900:intron	30.0%
TTACACAACTTTATCACAGT+GGG	+	chr5_2:35842927-35842946	Msa0768900:intron	30.0%
TTTAGTTGCAGAAATTGAAC+TGG	-	chr5_2:35842977-35842996	None:intergenic	30.0%
AGAATACGATACTATAGTCT+TGG	-	chr5_2:35843050-35843069	None:intergenic	30.0%
AAGACTATAGTATCGTATTC+TGG	+	chr5_2:35843049-35843068	Msa0768900:intron	30.0%
CTATGACATCAATGAAGATT+TGG	+	chr5_2:35843113-35843132	Msa0768900:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	35841311	35843138	35841311	ID=Msa0768900;Name=Msa0768900
chr5_2	mRNA	35841311	35843138	35841311	ID=Msa0768900-mRNA-1;Parent=Msa0768900;Name=Msa0768900-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0\|0\|0\|0.8\|1\|0.8\|5\|0\|138
chr5_2	exon	35841311	35841406	35841311	ID=Msa0768900-mRNA-1:exon:12130;Parent=Msa0768900-mRNA-1
chr5_2	exon	35841682	35841813	35841682	ID=Msa0768900-mRNA-1:exon:12131;Parent=Msa0768900-mRNA-1
chr5_2	exon	35842027	35842126	35842027	ID=Msa0768900-mRNA-1:exon:12132;Parent=Msa0768900-mRNA-1
chr5_2	exon	35842290	35842338	35842290	ID=Msa0768900-mRNA-1:exon:12133;Parent=Msa0768900-mRNA-1
chr5_2	exon	35843102	35843138	35843102	ID=Msa0768900-mRNA-1:exon:12134;Parent=Msa0768900-mRNA-1
chr5_2	CDS	35841311	35841406	35841311	ID=Msa0768900-mRNA-1:cds;Parent=Msa0768900-mRNA-1
chr5_2	CDS	35841682	35841813	35841682	ID=Msa0768900-mRNA-1:cds;Parent=Msa0768900-mRNA-1
chr5_2	CDS	35842027	35842126	35842027	ID=Msa0768900-mRNA-1:cds;Parent=Msa0768900-mRNA-1
chr5_2	CDS	35842290	35842338	35842290	ID=Msa0768900-mRNA-1:cds;Parent=Msa0768900-mRNA-1
chr5_2	CDS	35843102	35843138	35843102	ID=Msa0768900-mRNA-1:cds;Parent=Msa0768900-mRNA-1

Gene Sequence

>Msa0768900

ATGAACCATGAAGAGAAAGTTACCATGGACTTGGTTCCACCATCTGATCAACACCTCTGTTACGTTCGTTGCAACTTCTGTAACACTGTCCTAGCTGTTGGCATACCATGCAAGAGGCTGCTAGATACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTCACCACAAGACCACCAAGTTCCAAAAATCAAACTGTTGATCACACCCTCAGTCTCCAGGGGATTTACAGTAGCAAAAAAGGCCAACCATCATCTTCTTCTTCACCAACTACATCAACTGAGTCACTGTCCCCTAGACCACCGCCATTTGTTGTCAAACCACCTGAGAAGAAGCACCGTCTTCCATCTGCATACAACCGTTTCATGAAGAATGAAAGAGCTATGACATCAATGAAGATTTGGAGC

Protein sequence

>Msa0768900

MNHEEKVTMDLVPPSDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPSSKNQTVDHTLSLQGIYSSKKGQPSSSSSPTTSTESLSPRPPPFVVKPPEKKHRLPSAYNRFMKNERAMTSMKIWS