Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768900 | sp|Q76EJ0|YABDL_ORYSJ | 64.228 | 123 | 37 | 6 | 9 | 128 | 1 | 119 | 1.09e-42 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768900 | A0A396HT01 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 1.02e-87 | 262 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0768900 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0727540 | Msa0768900 | 0.890595 | 8.544981e-74 | -8.615850e-47 |
| Msa0768850 | Msa0768900 | 0.982285 | 1.061506e-154 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768900 | MtrunA17_Chr5g0419871 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 1.96e-91 | 262 |
| Msa0768900 | MtrunA17_Chr4g0063931 | 36.957 | 138 | 58 | 4 | 8 | 128 | 5 | 130 | 3.06e-24 | 92.4 |
| Msa0768900 | MtrunA17_Chr4g0025361 | 39.062 | 128 | 68 | 4 | 7 | 128 | 1 | 124 | 1.23e-22 | 87.8 |
| Msa0768900 | MtrunA17_Chr2g0322221 | 42.754 | 138 | 61 | 6 | 7 | 128 | 1 | 136 | 1.93e-22 | 87.8 |
| Msa0768900 | MtrunA17_Chr4g0056521 | 38.971 | 136 | 65 | 3 | 10 | 128 | 12 | 146 | 1.83e-18 | 77.8 |
| Msa0768900 | MtrunA17_Chr4g0011841 | 37.879 | 132 | 55 | 4 | 19 | 128 | 25 | 151 | 4.00e-18 | 77.0 |
| Msa0768900 | MtrunA17_Chr5g0413381 | 37.398 | 123 | 66 | 2 | 17 | 128 | 12 | 134 | 4.90e-18 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768900 | AT1G69180.1 | 62.121 | 132 | 43 | 4 | 1 | 128 | 1 | 129 | 2.37e-38 | 128 |
| Msa0768900 | AT1G08465.1 | 42.308 | 130 | 56 | 5 | 12 | 128 | 3 | 126 | 1.89e-22 | 87.8 |
| Msa0768900 | AT2G26580.2 | 40.833 | 120 | 58 | 3 | 15 | 128 | 7 | 119 | 8.64e-22 | 85.5 |
| Msa0768900 | AT2G26580.1 | 40.833 | 120 | 58 | 3 | 15 | 128 | 7 | 119 | 8.64e-22 | 85.5 |
| Msa0768900 | AT2G45190.1 | 40.426 | 141 | 60 | 7 | 10 | 128 | 17 | 155 | 1.04e-19 | 81.6 |
| Msa0768900 | AT1G23420.1 | 31.538 | 130 | 70 | 3 | 18 | 128 | 20 | 149 | 3.19e-13 | 64.7 |
| Msa0768900 | AT1G23420.2 | 31.783 | 129 | 69 | 3 | 19 | 128 | 52 | 180 | 4.45e-13 | 64.7 |
| Msa0768900 | AT4G00180.1 | 32.468 | 154 | 66 | 5 | 10 | 128 | 17 | 167 | 6.35e-13 | 63.9 |
Find 29 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGGTAACTTTCTCTTCA+TGG | 0.253602 | 5_2:-35841316 | None:intergenic |
| ACAACAAATGGCGGTGGTCT+AGG | 0.360978 | 5_2:-35842099 | None:intergenic |
| TGCTTACGTTTGACAACAAA+TGG | 0.370125 | 5_2:-35842111 | None:intergenic |
| CTATGACATCAATGAAGATT+TGG | 0.377058 | 5_2:+35843113 | Msa0768900:CDS |
| CAACAAATGGCGGTGGTCTA+GGG | 0.442200 | 5_2:-35842098 | None:intergenic |
| GGAAGACGGTGCTTCTTCTC+AGG | 0.456267 | 5_2:-35842292 | None:intergenic |
| ATTGCACTTACTTCATGAAA+CGG | 0.485516 | 5_2:-35842327 | None:intergenic |
| TGATCACACCCTCAGTCTCC+AGG | 0.486490 | 5_2:+35841792 | Msa0768900:CDS |
| AGAGAAAGTTACCATGGACT+TGG | 0.516644 | 5_2:+35841322 | Msa0768900:CDS |
| TTTGGAACTTGGTGGTCTTG+TGG | 0.524145 | 5_2:-35841758 | None:intergenic |
| ATGAAACGGTTGTATGCAGA+TGG | 0.547267 | 5_2:-35842313 | None:intergenic |
| ATTATTGAACCTGGAGACTG+AGG | 0.580682 | 5_2:-35841801 | None:intergenic |
| TAACAGAGGTGTTGATCAGA+TGG | 0.588546 | 5_2:-35841350 | None:intergenic |
| AGTGACTCAGTTGATGTAGT+TGG | 0.590905 | 5_2:-35842072 | None:intergenic |
| AACAAATGGCGGTGGTCTAG+GGG | 0.595027 | 5_2:-35842097 | None:intergenic |
| GTTGGTGAAGAAGAAGATGA+TGG | 0.609575 | 5_2:-35842054 | None:intergenic |
| CGTTTGACAACAAATGGCGG+TGG | 0.615312 | 5_2:-35842105 | None:intergenic |
| AGATGGTGGAACCAAGTCCA+TGG | 0.626957 | 5_2:-35841333 | None:intergenic |
| CCATGAAGAGAAAGTTACCA+TGG | 0.629385 | 5_2:+35841316 | Msa0768900:CDS |
| GTATCTAGCAGCCTCTTGCA+TGG | 0.634316 | 5_2:-35841691 | None:intergenic |
| GGTTGTATGCAGATGGAAGA+CGG | 0.643999 | 5_2:-35842306 | None:intergenic |
| GTGAAGAAGAAGATGATGGT+TGG | 0.655028 | 5_2:-35842050 | None:intergenic |
| CAGAGGTGTTGATCAGATGG+TGG | 0.661444 | 5_2:-35841347 | None:intergenic |
| AGGTTGGCATACCATGCAAG+AGG | 0.666035 | 5_2:+35841680 | Msa0768900:intron |
| TTATTGAACCTGGAGACTGA+GGG | 0.671255 | 5_2:-35841800 | None:intergenic |
| TTACGTTTGACAACAAATGG+CGG | 0.678472 | 5_2:-35842108 | None:intergenic |
| GATACTGTGACAGTGAAGTG+TGG | 0.709816 | 5_2:+35841709 | Msa0768900:CDS |
| AGTTGCAACGAACGTAACAG+AGG | 0.710301 | 5_2:-35841364 | None:intergenic |
| GTCTTGTGGTGAGAAAAGAG+AGG | 0.744847 | 5_2:-35841744 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTAATTAATAAAA+AGG | - | chr5_2:35841966-35841985 | None:intergenic | 0.0% |
| !! | TAATTAATTAATTAATAAAA+AGG | - | chr5_2:35841966-35841985 | None:intergenic | 0.0% |
| !! | TGATATATGAATAATATTAA+AGG | - | chr5_2:35841424-35841443 | None:intergenic | 10.0% |
| !!! | TAAATTTTTCTAAAATATGT+AGG | + | chr5_2:35841635-35841654 | Msa0768900:intron | 10.0% |
| !!! | AAATTTTTCTAAAATATGTA+GGG | + | chr5_2:35841636-35841655 | Msa0768900:intron | 10.0% |
| !!! | TATAGTATATATTTTAAACA+GGG | - | chr5_2:35842472-35842491 | None:intergenic | 10.0% |
| !! | ATATATATAGAAAATAAAAG+AGG | - | chr5_2:35842785-35842804 | None:intergenic | 10.0% |
| !! | TGATATATGAATAATATTAA+AGG | - | chr5_2:35841424-35841443 | None:intergenic | 10.0% |
| !!! | TAAATTTTTCTAAAATATGT+AGG | + | chr5_2:35841635-35841654 | Msa0768900:intron | 10.0% |
| !!! | AAATTTTTCTAAAATATGTA+GGG | + | chr5_2:35841636-35841655 | Msa0768900:intron | 10.0% |
| !!! | TATAGTATATATTTTAAACA+GGG | - | chr5_2:35842472-35842491 | None:intergenic | 10.0% |
| !! | ATATATATAGAAAATAAAAG+AGG | - | chr5_2:35842785-35842804 | None:intergenic | 10.0% |
| !!! | TTTTTTATTAGCTACATATA+TGG | + | chr5_2:35841589-35841608 | Msa0768900:intron | 15.0% |
| !!! | GTATAGTATATATTTTAAAC+AGG | - | chr5_2:35842473-35842492 | None:intergenic | 15.0% |
| !! | CTAAAATTTCTCTTATAAAT+AGG | - | chr5_2:35842509-35842528 | None:intergenic | 15.0% |
| !!! | ATAAAAAATGCAAACATTTT+TGG | - | chr5_2:35842762-35842781 | None:intergenic | 15.0% |
| !!! | TTTTTTATTAGCTACATATA+TGG | + | chr5_2:35841589-35841608 | Msa0768900:intron | 15.0% |
| !!! | GTATAGTATATATTTTAAAC+AGG | - | chr5_2:35842473-35842492 | None:intergenic | 15.0% |
| !! | CTAAAATTTCTCTTATAAAT+AGG | - | chr5_2:35842509-35842528 | None:intergenic | 15.0% |
| !!! | ATAAAAAATGCAAACATTTT+TGG | - | chr5_2:35842762-35842781 | None:intergenic | 15.0% |
| !! | TTTAATACTGTCTCTAAATT+TGG | + | chr5_2:35841551-35841570 | Msa0768900:intron | 20.0% |
| !!! | CATCTATATTTTTTGTTTTG+AGG | + | chr5_2:35841862-35841881 | Msa0768900:intron | 20.0% |
| !!! | ATGATGAGTTTTATATGTAT+TGG | + | chr5_2:35841939-35841958 | Msa0768900:intron | 20.0% |
| !!! | ATATATTTTAAACAGGGTAA+GGG | - | chr5_2:35842466-35842485 | None:intergenic | 20.0% |
| !!! | TATATATTTTAAACAGGGTA+AGG | - | chr5_2:35842467-35842486 | None:intergenic | 20.0% |
| !! | TCAACAAAAATTGATGTATT+TGG | + | chr5_2:35842529-35842548 | Msa0768900:intron | 20.0% |
| !! | ATATATATATATCACTGCTT+TGG | + | chr5_2:35842845-35842864 | Msa0768900:intron | 20.0% |
| !! | TTTAATACTGTCTCTAAATT+TGG | + | chr5_2:35841551-35841570 | Msa0768900:intron | 20.0% |
| !!! | CATCTATATTTTTTGTTTTG+AGG | + | chr5_2:35841862-35841881 | Msa0768900:intron | 20.0% |
| !!! | ATGATGAGTTTTATATGTAT+TGG | + | chr5_2:35841939-35841958 | Msa0768900:intron | 20.0% |
| !!! | ATATATTTTAAACAGGGTAA+GGG | - | chr5_2:35842466-35842485 | None:intergenic | 20.0% |
| !!! | TATATATTTTAAACAGGGTA+AGG | - | chr5_2:35842467-35842486 | None:intergenic | 20.0% |
| !! | TCAACAAAAATTGATGTATT+TGG | + | chr5_2:35842529-35842548 | Msa0768900:intron | 20.0% |
| !! | ATATATATATATCACTGCTT+TGG | + | chr5_2:35842845-35842864 | Msa0768900:intron | 20.0% |
| ! | CTAAACAAAATTATTGAACC+TGG | - | chr5_2:35841813-35841832 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | - | chr5_2:35842504-35842523 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | - | chr5_2:35842591-35842610 | None:intergenic | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | + | chr5_2:35842588-35842607 | Msa0768900:intron | 25.0% |
| ! | CTAAACAAAATTATTGAACC+TGG | - | chr5_2:35841813-35841832 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | - | chr5_2:35842504-35842523 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | - | chr5_2:35842591-35842610 | None:intergenic | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | + | chr5_2:35842588-35842607 | Msa0768900:intron | 25.0% |
| ! | AGTTAACAAGTTGAGAATGA+TGG | - | chr5_2:35841452-35841471 | None:intergenic | 30.0% |
| CTTCGTCTATAATTTCGTAT+AGG | - | chr5_2:35841524-35841543 | None:intergenic | 30.0% | |
| !! | TTCTAAAATATGTAGGGTTG+TGG | + | chr5_2:35841642-35841661 | Msa0768900:intron | 30.0% |
| !! | TGTGGTTTGTTATGTTATGT+AGG | + | chr5_2:35841660-35841679 | Msa0768900:intron | 30.0% |
| !! | GTTTGTTATGTTATGTAGGT+TGG | + | chr5_2:35841664-35841683 | Msa0768900:intron | 30.0% |
| !!! | ACAGTTTGATTTTTGGAACT+TGG | - | chr5_2:35841772-35841791 | None:intergenic | 30.0% |
| !! | GTGATCAACAGTTTGATTTT+TGG | - | chr5_2:35841779-35841798 | None:intergenic | 30.0% |
| !! | AGAATACTTTTGTTTGTAGC+AGG | + | chr5_2:35842005-35842024 | Msa0768900:intron | 30.0% |
| !! | GAATACTTTTGTTTGTAGCA+GGG | + | chr5_2:35842006-35842025 | Msa0768900:intron | 30.0% |
| !! | AATACTTTTGTTTGTAGCAG+GGG | + | chr5_2:35842007-35842026 | Msa0768900:intron | 30.0% |
| TTAGAGAGTAATGGTGAAAA+GGG | - | chr5_2:35842138-35842157 | None:intergenic | 30.0% | |
| GATATTTCCTTAGAGAGTAA+TGG | - | chr5_2:35842147-35842166 | None:intergenic | 30.0% | |
| ATTGCACTTACTTCATGAAA+CGG | - | chr5_2:35842330-35842349 | None:intergenic | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | + | chr5_2:35842593-35842612 | Msa0768900:intron | 30.0% | |
| !! | ATACTTTTTATCTGTCAGAG+AGG | + | chr5_2:35842673-35842692 | Msa0768900:intron | 30.0% |
| ! | TGTGTAACACAAGTTAGTTT+AGG | - | chr5_2:35842914-35842933 | None:intergenic | 30.0% |
| TTACACAACTTTATCACAGT+GGG | + | chr5_2:35842927-35842946 | Msa0768900:intron | 30.0% | |
| TTTAGTTGCAGAAATTGAAC+TGG | - | chr5_2:35842977-35842996 | None:intergenic | 30.0% | |
| AGAATACGATACTATAGTCT+TGG | - | chr5_2:35843050-35843069 | None:intergenic | 30.0% | |
| AAGACTATAGTATCGTATTC+TGG | + | chr5_2:35843049-35843068 | Msa0768900:intron | 30.0% | |
| CTATGACATCAATGAAGATT+TGG | + | chr5_2:35843113-35843132 | Msa0768900:CDS | 30.0% | |
| ! | AGTTAACAAGTTGAGAATGA+TGG | - | chr5_2:35841452-35841471 | None:intergenic | 30.0% |
| CTTCGTCTATAATTTCGTAT+AGG | - | chr5_2:35841524-35841543 | None:intergenic | 30.0% | |
| !! | TTCTAAAATATGTAGGGTTG+TGG | + | chr5_2:35841642-35841661 | Msa0768900:intron | 30.0% |
| !! | TGTGGTTTGTTATGTTATGT+AGG | + | chr5_2:35841660-35841679 | Msa0768900:intron | 30.0% |
| !! | GTTTGTTATGTTATGTAGGT+TGG | + | chr5_2:35841664-35841683 | Msa0768900:intron | 30.0% |
| !!! | ACAGTTTGATTTTTGGAACT+TGG | - | chr5_2:35841772-35841791 | None:intergenic | 30.0% |
| !! | GTGATCAACAGTTTGATTTT+TGG | - | chr5_2:35841779-35841798 | None:intergenic | 30.0% |
| !! | AGAATACTTTTGTTTGTAGC+AGG | + | chr5_2:35842005-35842024 | Msa0768900:intron | 30.0% |
| !! | GAATACTTTTGTTTGTAGCA+GGG | + | chr5_2:35842006-35842025 | Msa0768900:intron | 30.0% |
| !! | AATACTTTTGTTTGTAGCAG+GGG | + | chr5_2:35842007-35842026 | Msa0768900:intron | 30.0% |
| TTAGAGAGTAATGGTGAAAA+GGG | - | chr5_2:35842138-35842157 | None:intergenic | 30.0% | |
| GATATTTCCTTAGAGAGTAA+TGG | - | chr5_2:35842147-35842166 | None:intergenic | 30.0% | |
| ATTGCACTTACTTCATGAAA+CGG | - | chr5_2:35842330-35842349 | None:intergenic | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | + | chr5_2:35842593-35842612 | Msa0768900:intron | 30.0% | |
| !! | ATACTTTTTATCTGTCAGAG+AGG | + | chr5_2:35842673-35842692 | Msa0768900:intron | 30.0% |
| ! | TGTGTAACACAAGTTAGTTT+AGG | - | chr5_2:35842914-35842933 | None:intergenic | 30.0% |
| TTACACAACTTTATCACAGT+GGG | + | chr5_2:35842927-35842946 | Msa0768900:intron | 30.0% | |
| TTTAGTTGCAGAAATTGAAC+TGG | - | chr5_2:35842977-35842996 | None:intergenic | 30.0% | |
| AGAATACGATACTATAGTCT+TGG | - | chr5_2:35843050-35843069 | None:intergenic | 30.0% | |
| AAGACTATAGTATCGTATTC+TGG | + | chr5_2:35843049-35843068 | Msa0768900:intron | 30.0% | |
| CTATGACATCAATGAAGATT+TGG | + | chr5_2:35843113-35843132 | Msa0768900:CDS | 30.0% | |
| ! | AACAAGTTGAGAATGATGGA+TGG | - | chr5_2:35841448-35841467 | None:intergenic | 35.0% |
| !!! | GTTTGATTTTTGGAACTTGG+TGG | - | chr5_2:35841769-35841788 | None:intergenic | 35.0% |
| GGGATTTACAGTAGCAAAAA+AGG | + | chr5_2:35842027-35842046 | Msa0768900:CDS | 35.0% | |
| TTACGTTTGACAACAAATGG+CGG | - | chr5_2:35842111-35842130 | None:intergenic | 35.0% | |
| TGCTTACGTTTGACAACAAA+TGG | - | chr5_2:35842114-35842133 | None:intergenic | 35.0% | |
| CTTAGAGAGTAATGGTGAAA+AGG | - | chr5_2:35842139-35842158 | None:intergenic | 35.0% | |
| ! | CTTTTCACCATTACTCTCTA+AGG | + | chr5_2:35842137-35842156 | Msa0768900:intron | 35.0% |
| AACCAACCATAACTACAAGA+TGG | + | chr5_2:35842425-35842444 | Msa0768900:intron | 35.0% | |
| TACCATCTTGTAGTTATGGT+TGG | - | chr5_2:35842430-35842449 | None:intergenic | 35.0% | |
| GTGTTACCATCTTGTAGTTA+TGG | - | chr5_2:35842434-35842453 | None:intergenic | 35.0% | |
| ATATACTATACTACTCCCTC+CGG | + | chr5_2:35842482-35842501 | Msa0768900:intron | 35.0% | |
| AGTAAACTATATACTCCCTC+CGG | - | chr5_2:35842615-35842634 | None:intergenic | 35.0% | |
| GTTACACAACTTTATCACAG+TGG | + | chr5_2:35842926-35842945 | Msa0768900:intron | 35.0% | |
| !! | ATTGAACTGGTTGGTGAATT+TGG | - | chr5_2:35842964-35842983 | None:intergenic | 35.0% |
| ! | CTATAGTCTTGGAATATGCA+TGG | - | chr5_2:35843039-35843058 | None:intergenic | 35.0% |
| TTCTGTATGCTTATTTGTGC+AGG | + | chr5_2:35843080-35843099 | Msa0768900:intron | 35.0% | |
| ! | AACAAGTTGAGAATGATGGA+TGG | - | chr5_2:35841448-35841467 | None:intergenic | 35.0% |
| !!! | GTTTGATTTTTGGAACTTGG+TGG | - | chr5_2:35841769-35841788 | None:intergenic | 35.0% |
| GGGATTTACAGTAGCAAAAA+AGG | + | chr5_2:35842027-35842046 | Msa0768900:CDS | 35.0% | |
| TTACGTTTGACAACAAATGG+CGG | - | chr5_2:35842111-35842130 | None:intergenic | 35.0% | |
| TGCTTACGTTTGACAACAAA+TGG | - | chr5_2:35842114-35842133 | None:intergenic | 35.0% | |
| CTTAGAGAGTAATGGTGAAA+AGG | - | chr5_2:35842139-35842158 | None:intergenic | 35.0% | |
| ! | CTTTTCACCATTACTCTCTA+AGG | + | chr5_2:35842137-35842156 | Msa0768900:intron | 35.0% |
| AACCAACCATAACTACAAGA+TGG | + | chr5_2:35842425-35842444 | Msa0768900:intron | 35.0% | |
| TACCATCTTGTAGTTATGGT+TGG | - | chr5_2:35842430-35842449 | None:intergenic | 35.0% | |
| GTGTTACCATCTTGTAGTTA+TGG | - | chr5_2:35842434-35842453 | None:intergenic | 35.0% | |
| ATATACTATACTACTCCCTC+CGG | + | chr5_2:35842482-35842501 | Msa0768900:intron | 35.0% | |
| AGTAAACTATATACTCCCTC+CGG | - | chr5_2:35842615-35842634 | None:intergenic | 35.0% | |
| GTTACACAACTTTATCACAG+TGG | + | chr5_2:35842926-35842945 | Msa0768900:intron | 35.0% | |
| !! | ATTGAACTGGTTGGTGAATT+TGG | - | chr5_2:35842964-35842983 | None:intergenic | 35.0% |
| ! | CTATAGTCTTGGAATATGCA+TGG | - | chr5_2:35843039-35843058 | None:intergenic | 35.0% |
| TTCTGTATGCTTATTTGTGC+AGG | + | chr5_2:35843080-35843099 | Msa0768900:intron | 35.0% | |
| CCATGGTAACTTTCTCTTCA+TGG | - | chr5_2:35841319-35841338 | None:intergenic | 40.0% | |
| CCATGAAGAGAAAGTTACCA+TGG | + | chr5_2:35841316-35841335 | Msa0768900:CDS | 40.0% | |
| AGAGAAAGTTACCATGGACT+TGG | + | chr5_2:35841322-35841341 | Msa0768900:CDS | 40.0% | |
| !! | TAACAGAGGTGTTGATCAGA+TGG | - | chr5_2:35841353-35841372 | None:intergenic | 40.0% |
| GGTGAAGTTTACATACAGCT+AGG | - | chr5_2:35841403-35841422 | None:intergenic | 40.0% | |
| TTATTGAACCTGGAGACTGA+GGG | - | chr5_2:35841803-35841822 | None:intergenic | 40.0% | |
| ATTATTGAACCTGGAGACTG+AGG | - | chr5_2:35841804-35841823 | None:intergenic | 40.0% | |
| ! | GTGAAGAAGAAGATGATGGT+TGG | - | chr5_2:35842053-35842072 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGAAGAAGATGA+TGG | - | chr5_2:35842057-35842076 | None:intergenic | 40.0% |
| ! | AGTGACTCAGTTGATGTAGT+TGG | - | chr5_2:35842075-35842094 | None:intergenic | 40.0% |
| ATGAAACGGTTGTATGCAGA+TGG | - | chr5_2:35842316-35842335 | None:intergenic | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr5_2:35842597-35842616 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr5_2:35842596-35842615 | None:intergenic | 40.0% | |
| TCAACAAAAGTCGATGGATC+TGG | - | chr5_2:35842568-35842587 | None:intergenic | 40.0% | |
| GTTAGGTCAACAAAAGTCGA+TGG | - | chr5_2:35842574-35842593 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr5_2:35842596-35842615 | Msa0768900:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr5_2:35842597-35842616 | Msa0768900:intron | 40.0% | |
| GTTGCAGAAATTGAACTGGT+TGG | - | chr5_2:35842973-35842992 | None:intergenic | 40.0% | |
| CCATGGTAACTTTCTCTTCA+TGG | - | chr5_2:35841319-35841338 | None:intergenic | 40.0% | |
| CCATGAAGAGAAAGTTACCA+TGG | + | chr5_2:35841316-35841335 | Msa0768900:CDS | 40.0% | |
| AGAGAAAGTTACCATGGACT+TGG | + | chr5_2:35841322-35841341 | Msa0768900:CDS | 40.0% | |
| !! | TAACAGAGGTGTTGATCAGA+TGG | - | chr5_2:35841353-35841372 | None:intergenic | 40.0% |
| GGTGAAGTTTACATACAGCT+AGG | - | chr5_2:35841403-35841422 | None:intergenic | 40.0% | |
| TTATTGAACCTGGAGACTGA+GGG | - | chr5_2:35841803-35841822 | None:intergenic | 40.0% | |
| ATTATTGAACCTGGAGACTG+AGG | - | chr5_2:35841804-35841823 | None:intergenic | 40.0% | |
| ! | GTGAAGAAGAAGATGATGGT+TGG | - | chr5_2:35842053-35842072 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGAAGAAGATGA+TGG | - | chr5_2:35842057-35842076 | None:intergenic | 40.0% |
| ! | AGTGACTCAGTTGATGTAGT+TGG | - | chr5_2:35842075-35842094 | None:intergenic | 40.0% |
| ATGAAACGGTTGTATGCAGA+TGG | - | chr5_2:35842316-35842335 | None:intergenic | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr5_2:35842597-35842616 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr5_2:35842596-35842615 | None:intergenic | 40.0% | |
| TCAACAAAAGTCGATGGATC+TGG | - | chr5_2:35842568-35842587 | None:intergenic | 40.0% | |
| GTTAGGTCAACAAAAGTCGA+TGG | - | chr5_2:35842574-35842593 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr5_2:35842596-35842615 | Msa0768900:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr5_2:35842597-35842616 | Msa0768900:intron | 40.0% | |
| GTTGCAGAAATTGAACTGGT+TGG | - | chr5_2:35842973-35842992 | None:intergenic | 40.0% | |
| AGTTGCAACGAACGTAACAG+AGG | - | chr5_2:35841367-35841386 | None:intergenic | 45.0% | |
| GATACTGTGACAGTGAAGTG+TGG | + | chr5_2:35841709-35841728 | Msa0768900:CDS | 45.0% | |
| GTCTTGTGGTGAGAAAAGAG+AGG | - | chr5_2:35841747-35841766 | None:intergenic | 45.0% | |
| ! | TTTGGAACTTGGTGGTCTTG+TGG | - | chr5_2:35841761-35841780 | None:intergenic | 45.0% |
| GGTTGTATGCAGATGGAAGA+CGG | - | chr5_2:35842309-35842328 | None:intergenic | 45.0% | |
| CACTGAAAGCTTCTCGATGT+GGG | - | chr5_2:35842733-35842752 | None:intergenic | 45.0% | |
| ! | CAACTTTATCACAGTGGGCT+AGG | + | chr5_2:35842932-35842951 | Msa0768900:intron | 45.0% |
| AGTTGCAACGAACGTAACAG+AGG | - | chr5_2:35841367-35841386 | None:intergenic | 45.0% | |
| GATACTGTGACAGTGAAGTG+TGG | + | chr5_2:35841709-35841728 | Msa0768900:CDS | 45.0% | |
| GTCTTGTGGTGAGAAAAGAG+AGG | - | chr5_2:35841747-35841766 | None:intergenic | 45.0% | |
| ! | TTTGGAACTTGGTGGTCTTG+TGG | - | chr5_2:35841761-35841780 | None:intergenic | 45.0% |
| GGTTGTATGCAGATGGAAGA+CGG | - | chr5_2:35842309-35842328 | None:intergenic | 45.0% | |
| CACTGAAAGCTTCTCGATGT+GGG | - | chr5_2:35842733-35842752 | None:intergenic | 45.0% | |
| ! | CAACTTTATCACAGTGGGCT+AGG | + | chr5_2:35842932-35842951 | Msa0768900:intron | 45.0% |
| !! | AGATGGTGGAACCAAGTCCA+TGG | - | chr5_2:35841336-35841355 | None:intergenic | 50.0% |
| !! | CAGAGGTGTTGATCAGATGG+TGG | - | chr5_2:35841350-35841369 | None:intergenic | 50.0% |
| AGGTTGGCATACCATGCAAG+AGG | + | chr5_2:35841680-35841699 | Msa0768900:intron | 50.0% | |
| GTATCTAGCAGCCTCTTGCA+TGG | - | chr5_2:35841694-35841713 | None:intergenic | 50.0% | |
| AACAAATGGCGGTGGTCTAG+GGG | - | chr5_2:35842100-35842119 | None:intergenic | 50.0% | |
| CAACAAATGGCGGTGGTCTA+GGG | - | chr5_2:35842101-35842120 | None:intergenic | 50.0% | |
| ACAACAAATGGCGGTGGTCT+AGG | - | chr5_2:35842102-35842121 | None:intergenic | 50.0% | |
| CGTTTGACAACAAATGGCGG+TGG | - | chr5_2:35842108-35842127 | None:intergenic | 50.0% | |
| CTTCTCGATGTGGGATCTGA+GGG | - | chr5_2:35842724-35842743 | None:intergenic | 50.0% | |
| GCACTGAAAGCTTCTCGATG+TGG | - | chr5_2:35842734-35842753 | None:intergenic | 50.0% | |
| !! | AGATGGTGGAACCAAGTCCA+TGG | - | chr5_2:35841336-35841355 | None:intergenic | 50.0% |
| !! | CAGAGGTGTTGATCAGATGG+TGG | - | chr5_2:35841350-35841369 | None:intergenic | 50.0% |
| AGGTTGGCATACCATGCAAG+AGG | + | chr5_2:35841680-35841699 | Msa0768900:intron | 50.0% | |
| GTATCTAGCAGCCTCTTGCA+TGG | - | chr5_2:35841694-35841713 | None:intergenic | 50.0% | |
| AACAAATGGCGGTGGTCTAG+GGG | - | chr5_2:35842100-35842119 | None:intergenic | 50.0% | |
| CAACAAATGGCGGTGGTCTA+GGG | - | chr5_2:35842101-35842120 | None:intergenic | 50.0% | |
| ACAACAAATGGCGGTGGTCT+AGG | - | chr5_2:35842102-35842121 | None:intergenic | 50.0% | |
| CGTTTGACAACAAATGGCGG+TGG | - | chr5_2:35842108-35842127 | None:intergenic | 50.0% | |
| CTTCTCGATGTGGGATCTGA+GGG | - | chr5_2:35842724-35842743 | None:intergenic | 50.0% | |
| GCACTGAAAGCTTCTCGATG+TGG | - | chr5_2:35842734-35842753 | None:intergenic | 50.0% | |
| TGATCACACCCTCAGTCTCC+AGG | + | chr5_2:35841792-35841811 | Msa0768900:CDS | 55.0% | |
| GGAAGACGGTGCTTCTTCTC+AGG | - | chr5_2:35842295-35842314 | None:intergenic | 55.0% | |
| TCGATGTGGGATCTGAGGGT+TGG | - | chr5_2:35842720-35842739 | None:intergenic | 55.0% | |
| GCTTCTCGATGTGGGATCTG+AGG | - | chr5_2:35842725-35842744 | None:intergenic | 55.0% | |
| TGATCACACCCTCAGTCTCC+AGG | + | chr5_2:35841792-35841811 | Msa0768900:CDS | 55.0% | |
| GGAAGACGGTGCTTCTTCTC+AGG | - | chr5_2:35842295-35842314 | None:intergenic | 55.0% | |
| TCGATGTGGGATCTGAGGGT+TGG | - | chr5_2:35842720-35842739 | None:intergenic | 55.0% | |
| GCTTCTCGATGTGGGATCTG+AGG | - | chr5_2:35842725-35842744 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 35841311 | 35843138 | 35841311 | ID=Msa0768900;Name=Msa0768900 |
| chr5_2 | mRNA | 35841311 | 35843138 | 35841311 | ID=Msa0768900-mRNA-1;Parent=Msa0768900;Name=Msa0768900-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0|0|0.8|1|0.8|5|0|138 |
| chr5_2 | exon | 35841311 | 35841406 | 35841311 | ID=Msa0768900-mRNA-1:exon:12130;Parent=Msa0768900-mRNA-1 |
| chr5_2 | exon | 35841682 | 35841813 | 35841682 | ID=Msa0768900-mRNA-1:exon:12131;Parent=Msa0768900-mRNA-1 |
| chr5_2 | exon | 35842027 | 35842126 | 35842027 | ID=Msa0768900-mRNA-1:exon:12132;Parent=Msa0768900-mRNA-1 |
| chr5_2 | exon | 35842290 | 35842338 | 35842290 | ID=Msa0768900-mRNA-1:exon:12133;Parent=Msa0768900-mRNA-1 |
| chr5_2 | exon | 35843102 | 35843138 | 35843102 | ID=Msa0768900-mRNA-1:exon:12134;Parent=Msa0768900-mRNA-1 |
| chr5_2 | CDS | 35841311 | 35841406 | 35841311 | ID=Msa0768900-mRNA-1:cds;Parent=Msa0768900-mRNA-1 |
| chr5_2 | CDS | 35841682 | 35841813 | 35841682 | ID=Msa0768900-mRNA-1:cds;Parent=Msa0768900-mRNA-1 |
| chr5_2 | CDS | 35842027 | 35842126 | 35842027 | ID=Msa0768900-mRNA-1:cds;Parent=Msa0768900-mRNA-1 |
| chr5_2 | CDS | 35842290 | 35842338 | 35842290 | ID=Msa0768900-mRNA-1:cds;Parent=Msa0768900-mRNA-1 |
| chr5_2 | CDS | 35843102 | 35843138 | 35843102 | ID=Msa0768900-mRNA-1:cds;Parent=Msa0768900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
