Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768850 | XP_024640580.1 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 4.49e-88 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768850 | sp|Q76EJ0|YABDL_ORYSJ | 64.228 | 123 | 37 | 6 | 9 | 128 | 1 | 119 | 1.09e-42 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768850 | A0A396HT01 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 1.02e-87 | 262 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0768850 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0727540 | Msa0768850 | 0.874494 | 6.466087e-68 | -8.615850e-47 |
| Msa0768850 | Msa0768900 | 0.982285 | 1.061506e-154 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768850 | MtrunA17_Chr5g0419871 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 1.96e-91 | 262 |
| Msa0768850 | MtrunA17_Chr4g0063931 | 36.957 | 138 | 58 | 4 | 8 | 128 | 5 | 130 | 3.06e-24 | 92.4 |
| Msa0768850 | MtrunA17_Chr4g0025361 | 39.062 | 128 | 68 | 4 | 7 | 128 | 1 | 124 | 1.23e-22 | 87.8 |
| Msa0768850 | MtrunA17_Chr2g0322221 | 42.754 | 138 | 61 | 6 | 7 | 128 | 1 | 136 | 1.93e-22 | 87.8 |
| Msa0768850 | MtrunA17_Chr4g0056521 | 38.971 | 136 | 65 | 3 | 10 | 128 | 12 | 146 | 1.83e-18 | 77.8 |
| Msa0768850 | MtrunA17_Chr4g0011841 | 37.879 | 132 | 55 | 4 | 19 | 128 | 25 | 151 | 4.00e-18 | 77.0 |
| Msa0768850 | MtrunA17_Chr5g0413381 | 37.398 | 123 | 66 | 2 | 17 | 128 | 12 | 134 | 4.90e-18 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768850 | AT1G69180.1 | 62.121 | 132 | 43 | 4 | 1 | 128 | 1 | 129 | 2.37e-38 | 128 |
| Msa0768850 | AT1G08465.1 | 42.308 | 130 | 56 | 5 | 12 | 128 | 3 | 126 | 1.89e-22 | 87.8 |
| Msa0768850 | AT2G26580.2 | 40.833 | 120 | 58 | 3 | 15 | 128 | 7 | 119 | 8.64e-22 | 85.5 |
| Msa0768850 | AT2G26580.1 | 40.833 | 120 | 58 | 3 | 15 | 128 | 7 | 119 | 8.64e-22 | 85.5 |
| Msa0768850 | AT2G45190.1 | 40.426 | 141 | 60 | 7 | 10 | 128 | 17 | 155 | 1.04e-19 | 81.6 |
| Msa0768850 | AT1G23420.1 | 31.538 | 130 | 70 | 3 | 18 | 128 | 20 | 149 | 3.19e-13 | 64.7 |
| Msa0768850 | AT1G23420.2 | 31.783 | 129 | 69 | 3 | 19 | 128 | 52 | 180 | 4.45e-13 | 64.7 |
| Msa0768850 | AT4G00180.1 | 32.468 | 154 | 66 | 5 | 10 | 128 | 17 | 167 | 6.35e-13 | 63.9 |
Find 29 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGGTAACTTTCTCTTCA+TGG | 0.253602 | 5_2:-35637149 | None:intergenic |
| ACAACAAATGGCGGTGGTCT+AGG | 0.360978 | 5_2:-35637934 | None:intergenic |
| TGCTTACGTTTGACAACAAA+TGG | 0.370125 | 5_2:-35637946 | None:intergenic |
| CTATGACATCAATGAAGATT+TGG | 0.377058 | 5_2:+35638940 | Msa0768850:CDS |
| CAACAAATGGCGGTGGTCTA+GGG | 0.442200 | 5_2:-35637933 | None:intergenic |
| GGAAGACGGTGCTTCTTCTC+AGG | 0.456267 | 5_2:-35638125 | None:intergenic |
| ATTGCACTTACTTCATGAAA+CGG | 0.485516 | 5_2:-35638160 | None:intergenic |
| TGATCACACCCTCAGTCTCC+AGG | 0.486490 | 5_2:+35637624 | Msa0768850:CDS |
| AGAGAAAGTTACCATGGACT+TGG | 0.516644 | 5_2:+35637155 | Msa0768850:CDS |
| TTTGGAACTTGGTGGTCTTG+TGG | 0.524145 | 5_2:-35637590 | None:intergenic |
| ATGAAACGGTTGTATGCAGA+TGG | 0.547267 | 5_2:-35638146 | None:intergenic |
| ATTATTGAACCTGGAGACTG+AGG | 0.580682 | 5_2:-35637633 | None:intergenic |
| TAACAGAGGTGTTGATCAGA+TGG | 0.588546 | 5_2:-35637183 | None:intergenic |
| AGTGACTCAGTTGATGTAGT+TGG | 0.590905 | 5_2:-35637907 | None:intergenic |
| AACAAATGGCGGTGGTCTAG+GGG | 0.595027 | 5_2:-35637932 | None:intergenic |
| GTTGGTGAAGAAGAAGATGA+TGG | 0.609575 | 5_2:-35637889 | None:intergenic |
| CGTTTGACAACAAATGGCGG+TGG | 0.615312 | 5_2:-35637940 | None:intergenic |
| AGATGGTGGAACCAAGTCCA+TGG | 0.626957 | 5_2:-35637166 | None:intergenic |
| CCATGAAGAGAAAGTTACCA+TGG | 0.629385 | 5_2:+35637149 | Msa0768850:CDS |
| GTATCTAGCAGCCTCTTGCA+TGG | 0.634316 | 5_2:-35637523 | None:intergenic |
| GGTTGTATGCAGATGGAAGA+CGG | 0.643999 | 5_2:-35638139 | None:intergenic |
| GTGAAGAAGAAGATGATGGT+TGG | 0.655028 | 5_2:-35637885 | None:intergenic |
| CAGAGGTGTTGATCAGATGG+TGG | 0.661444 | 5_2:-35637180 | None:intergenic |
| AGGTTGGCATACCATGCAAG+AGG | 0.666035 | 5_2:+35637512 | Msa0768850:intron |
| TTATTGAACCTGGAGACTGA+GGG | 0.671255 | 5_2:-35637632 | None:intergenic |
| TTACGTTTGACAACAAATGG+CGG | 0.678472 | 5_2:-35637943 | None:intergenic |
| GATACTGTGACAGTGAAGTG+TGG | 0.709816 | 5_2:+35637541 | Msa0768850:CDS |
| AGTTGCAACGAACGTAACAG+AGG | 0.710301 | 5_2:-35637197 | None:intergenic |
| GTCTTGTGGTGAGAAAAGAG+AGG | 0.744847 | 5_2:-35637576 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTAATTAATAAAA+AGG | - | chr5_2:35637801-35637820 | None:intergenic | 0.0% |
| !! | TAATTAATTAATTAATAAAA+AGG | - | chr5_2:35637801-35637820 | None:intergenic | 0.0% |
| !! | TGATATATGAATAATATTAA+AGG | - | chr5_2:35637257-35637276 | None:intergenic | 10.0% |
| !!! | TAAATTTTTCTAAAATATGT+AGG | + | chr5_2:35637467-35637486 | Msa0768850:intron | 10.0% |
| !!! | AAATTTTTCTAAAATATGTA+GGG | + | chr5_2:35637468-35637487 | Msa0768850:intron | 10.0% |
| !!! | TATAGTATATATTTTAAACA+GGG | - | chr5_2:35638304-35638323 | None:intergenic | 10.0% |
| !! | TATATATAAGAAAATAAAAG+AGG | - | chr5_2:35638617-35638636 | None:intergenic | 10.0% |
| !! | TGATATATGAATAATATTAA+AGG | - | chr5_2:35637257-35637276 | None:intergenic | 10.0% |
| !!! | TAAATTTTTCTAAAATATGT+AGG | + | chr5_2:35637467-35637486 | Msa0768850:intron | 10.0% |
| !!! | AAATTTTTCTAAAATATGTA+GGG | + | chr5_2:35637468-35637487 | Msa0768850:intron | 10.0% |
| !!! | TATAGTATATATTTTAAACA+GGG | - | chr5_2:35638304-35638323 | None:intergenic | 10.0% |
| !! | TATATATAAGAAAATAAAAG+AGG | - | chr5_2:35638617-35638636 | None:intergenic | 10.0% |
| !!! | TTTTTTATTAGCTACATATA+TGG | + | chr5_2:35637421-35637440 | Msa0768850:intron | 15.0% |
| !!! | GTATAGTATATATTTTAAAC+AGG | - | chr5_2:35638305-35638324 | None:intergenic | 15.0% |
| !! | CTAAAATTTCTCTTATAAAT+AGG | - | chr5_2:35638341-35638360 | None:intergenic | 15.0% |
| !!! | ATAAAAAATGCAAACATTTT+TGG | - | chr5_2:35638594-35638613 | None:intergenic | 15.0% |
| !!! | TTTTTTATTAGCTACATATA+TGG | + | chr5_2:35637421-35637440 | Msa0768850:intron | 15.0% |
| !!! | GTATAGTATATATTTTAAAC+AGG | - | chr5_2:35638305-35638324 | None:intergenic | 15.0% |
| !! | CTAAAATTTCTCTTATAAAT+AGG | - | chr5_2:35638341-35638360 | None:intergenic | 15.0% |
| !!! | ATAAAAAATGCAAACATTTT+TGG | - | chr5_2:35638594-35638613 | None:intergenic | 15.0% |
| !! | TTTAATACTGTCTCTAAATT+TGG | + | chr5_2:35637383-35637402 | Msa0768850:intron | 20.0% |
| !!! | CATCTATATTTTTTGTTTTG+AGG | + | chr5_2:35637696-35637715 | Msa0768850:intron | 20.0% |
| !!! | ATGATGAGTTTTATATGTAT+TGG | + | chr5_2:35637774-35637793 | Msa0768850:intron | 20.0% |
| !!! | ATATATTTTAAACAGGGTAA+GGG | - | chr5_2:35638298-35638317 | None:intergenic | 20.0% |
| !!! | TATATATTTTAAACAGGGTA+AGG | - | chr5_2:35638299-35638318 | None:intergenic | 20.0% |
| !! | TCAACAAAAATTGATGTATT+TGG | + | chr5_2:35638361-35638380 | Msa0768850:intron | 20.0% |
| !! | ATATATATATATCACTGCTT+TGG | + | chr5_2:35638672-35638691 | Msa0768850:intron | 20.0% |
| !! | TTTAATACTGTCTCTAAATT+TGG | + | chr5_2:35637383-35637402 | Msa0768850:intron | 20.0% |
| !!! | CATCTATATTTTTTGTTTTG+AGG | + | chr5_2:35637696-35637715 | Msa0768850:intron | 20.0% |
| !!! | ATGATGAGTTTTATATGTAT+TGG | + | chr5_2:35637774-35637793 | Msa0768850:intron | 20.0% |
| !!! | ATATATTTTAAACAGGGTAA+GGG | - | chr5_2:35638298-35638317 | None:intergenic | 20.0% |
| !!! | TATATATTTTAAACAGGGTA+AGG | - | chr5_2:35638299-35638318 | None:intergenic | 20.0% |
| !! | TCAACAAAAATTGATGTATT+TGG | + | chr5_2:35638361-35638380 | Msa0768850:intron | 20.0% |
| !! | ATATATATATATCACTGCTT+TGG | + | chr5_2:35638672-35638691 | Msa0768850:intron | 20.0% |
| ! | CTAAACAAAATTATTGAACC+TGG | - | chr5_2:35637645-35637664 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | - | chr5_2:35638336-35638355 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | - | chr5_2:35638423-35638442 | None:intergenic | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | + | chr5_2:35638420-35638439 | Msa0768850:intron | 25.0% |
| ! | AGAATACTATACTATAGTCT+TGG | - | chr5_2:35638877-35638896 | None:intergenic | 25.0% |
| ! | AAGACTATAGTATAGTATTC+TGG | + | chr5_2:35638876-35638895 | Msa0768850:intron | 25.0% |
| ! | CTAAACAAAATTATTGAACC+TGG | - | chr5_2:35637645-35637664 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | - | chr5_2:35638336-35638355 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | - | chr5_2:35638423-35638442 | None:intergenic | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | + | chr5_2:35638420-35638439 | Msa0768850:intron | 25.0% |
| ! | AGAATACTATACTATAGTCT+TGG | - | chr5_2:35638877-35638896 | None:intergenic | 25.0% |
| ! | AAGACTATAGTATAGTATTC+TGG | + | chr5_2:35638876-35638895 | Msa0768850:intron | 25.0% |
| ! | AGTTAACAAGTTGAGAATGA+TGG | - | chr5_2:35637285-35637304 | None:intergenic | 30.0% |
| CTTCGTCTATAATTTCGTAT+AGG | - | chr5_2:35637356-35637375 | None:intergenic | 30.0% | |
| !! | TTCTAAAATATGTAGGGTTG+TGG | + | chr5_2:35637474-35637493 | Msa0768850:intron | 30.0% |
| !! | TGTGGTTTGTTATGTTATGT+AGG | + | chr5_2:35637492-35637511 | Msa0768850:intron | 30.0% |
| !! | GTTTGTTATGTTATGTAGGT+TGG | + | chr5_2:35637496-35637515 | Msa0768850:intron | 30.0% |
| !!! | ACAGTTTGATTTTTGGAACT+TGG | - | chr5_2:35637604-35637623 | None:intergenic | 30.0% |
| !! | GTGATCAACAGTTTGATTTT+TGG | - | chr5_2:35637611-35637630 | None:intergenic | 30.0% |
| !! | AGAATACTTTTGTTTGTAGC+AGG | + | chr5_2:35637840-35637859 | Msa0768850:intron | 30.0% |
| !! | GAATACTTTTGTTTGTAGCA+GGG | + | chr5_2:35637841-35637860 | Msa0768850:intron | 30.0% |
| !! | AATACTTTTGTTTGTAGCAG+GGG | + | chr5_2:35637842-35637861 | Msa0768850:intron | 30.0% |
| TTAGAGAGTAATGGTGAAAA+GGG | - | chr5_2:35637973-35637992 | None:intergenic | 30.0% | |
| GATATTTCCTTAGAGAGTAA+TGG | - | chr5_2:35637982-35638001 | None:intergenic | 30.0% | |
| ATTGCACTTACTTCATGAAA+CGG | - | chr5_2:35638163-35638182 | None:intergenic | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | + | chr5_2:35638425-35638444 | Msa0768850:intron | 30.0% | |
| !! | ATACTTTTTATCTGTCAGAG+AGG | + | chr5_2:35638505-35638524 | Msa0768850:intron | 30.0% |
| ! | TGTGTAACACAAGTTAGTTT+AGG | - | chr5_2:35638741-35638760 | None:intergenic | 30.0% |
| TTACACAACTTTATCACAGT+GGG | + | chr5_2:35638754-35638773 | Msa0768850:intron | 30.0% | |
| TTTAGTTGCAGAAATTGAAC+TGG | - | chr5_2:35638804-35638823 | None:intergenic | 30.0% | |
| CTATGACATCAATGAAGATT+TGG | + | chr5_2:35638940-35638959 | Msa0768850:CDS | 30.0% | |
| ! | AGTTAACAAGTTGAGAATGA+TGG | - | chr5_2:35637285-35637304 | None:intergenic | 30.0% |
| CTTCGTCTATAATTTCGTAT+AGG | - | chr5_2:35637356-35637375 | None:intergenic | 30.0% | |
| !! | TTCTAAAATATGTAGGGTTG+TGG | + | chr5_2:35637474-35637493 | Msa0768850:intron | 30.0% |
| !! | TGTGGTTTGTTATGTTATGT+AGG | + | chr5_2:35637492-35637511 | Msa0768850:intron | 30.0% |
| !! | GTTTGTTATGTTATGTAGGT+TGG | + | chr5_2:35637496-35637515 | Msa0768850:intron | 30.0% |
| !!! | ACAGTTTGATTTTTGGAACT+TGG | - | chr5_2:35637604-35637623 | None:intergenic | 30.0% |
| !! | GTGATCAACAGTTTGATTTT+TGG | - | chr5_2:35637611-35637630 | None:intergenic | 30.0% |
| !! | AGAATACTTTTGTTTGTAGC+AGG | + | chr5_2:35637840-35637859 | Msa0768850:intron | 30.0% |
| !! | GAATACTTTTGTTTGTAGCA+GGG | + | chr5_2:35637841-35637860 | Msa0768850:intron | 30.0% |
| !! | AATACTTTTGTTTGTAGCAG+GGG | + | chr5_2:35637842-35637861 | Msa0768850:intron | 30.0% |
| TTAGAGAGTAATGGTGAAAA+GGG | - | chr5_2:35637973-35637992 | None:intergenic | 30.0% | |
| GATATTTCCTTAGAGAGTAA+TGG | - | chr5_2:35637982-35638001 | None:intergenic | 30.0% | |
| ATTGCACTTACTTCATGAAA+CGG | - | chr5_2:35638163-35638182 | None:intergenic | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | + | chr5_2:35638425-35638444 | Msa0768850:intron | 30.0% | |
| !! | ATACTTTTTATCTGTCAGAG+AGG | + | chr5_2:35638505-35638524 | Msa0768850:intron | 30.0% |
| ! | TGTGTAACACAAGTTAGTTT+AGG | - | chr5_2:35638741-35638760 | None:intergenic | 30.0% |
| TTACACAACTTTATCACAGT+GGG | + | chr5_2:35638754-35638773 | Msa0768850:intron | 30.0% | |
| TTTAGTTGCAGAAATTGAAC+TGG | - | chr5_2:35638804-35638823 | None:intergenic | 30.0% | |
| CTATGACATCAATGAAGATT+TGG | + | chr5_2:35638940-35638959 | Msa0768850:CDS | 30.0% | |
| ! | AACAAGTTGAGAATGATGGA+TGG | - | chr5_2:35637281-35637300 | None:intergenic | 35.0% |
| !!! | GTTTGATTTTTGGAACTTGG+TGG | - | chr5_2:35637601-35637620 | None:intergenic | 35.0% |
| GGGATTTACAGTAGCAAAAA+AGG | + | chr5_2:35637862-35637881 | Msa0768850:CDS | 35.0% | |
| TTACGTTTGACAACAAATGG+CGG | - | chr5_2:35637946-35637965 | None:intergenic | 35.0% | |
| TGCTTACGTTTGACAACAAA+TGG | - | chr5_2:35637949-35637968 | None:intergenic | 35.0% | |
| CTTAGAGAGTAATGGTGAAA+AGG | - | chr5_2:35637974-35637993 | None:intergenic | 35.0% | |
| ! | CTTTTCACCATTACTCTCTA+AGG | + | chr5_2:35637972-35637991 | Msa0768850:intron | 35.0% |
| AACCAACCATAACTACAAGA+TGG | + | chr5_2:35638257-35638276 | Msa0768850:intron | 35.0% | |
| TACCATCTTGTAGTTATGGT+TGG | - | chr5_2:35638262-35638281 | None:intergenic | 35.0% | |
| GTGTTACCATCTTGTAGTTA+TGG | - | chr5_2:35638266-35638285 | None:intergenic | 35.0% | |
| ATATACTATACTACTCCCTC+CGG | + | chr5_2:35638314-35638333 | Msa0768850:intron | 35.0% | |
| AGTAAACTATATACTCCCTC+CGG | - | chr5_2:35638447-35638466 | None:intergenic | 35.0% | |
| GTTACACAACTTTATCACAG+TGG | + | chr5_2:35638753-35638772 | Msa0768850:intron | 35.0% | |
| !! | ATTGAACTGGTTGGTGAATT+TGG | - | chr5_2:35638791-35638810 | None:intergenic | 35.0% |
| ! | CTATAGTCTTGGAATATGCA+TGG | - | chr5_2:35638866-35638885 | None:intergenic | 35.0% |
| TTCTGTATGCTTATTTGTGC+AGG | + | chr5_2:35638907-35638926 | Msa0768850:intron | 35.0% | |
| ! | AACAAGTTGAGAATGATGGA+TGG | - | chr5_2:35637281-35637300 | None:intergenic | 35.0% |
| !!! | GTTTGATTTTTGGAACTTGG+TGG | - | chr5_2:35637601-35637620 | None:intergenic | 35.0% |
| GGGATTTACAGTAGCAAAAA+AGG | + | chr5_2:35637862-35637881 | Msa0768850:CDS | 35.0% | |
| TTACGTTTGACAACAAATGG+CGG | - | chr5_2:35637946-35637965 | None:intergenic | 35.0% | |
| TGCTTACGTTTGACAACAAA+TGG | - | chr5_2:35637949-35637968 | None:intergenic | 35.0% | |
| CTTAGAGAGTAATGGTGAAA+AGG | - | chr5_2:35637974-35637993 | None:intergenic | 35.0% | |
| ! | CTTTTCACCATTACTCTCTA+AGG | + | chr5_2:35637972-35637991 | Msa0768850:intron | 35.0% |
| AACCAACCATAACTACAAGA+TGG | + | chr5_2:35638257-35638276 | Msa0768850:intron | 35.0% | |
| TACCATCTTGTAGTTATGGT+TGG | - | chr5_2:35638262-35638281 | None:intergenic | 35.0% | |
| GTGTTACCATCTTGTAGTTA+TGG | - | chr5_2:35638266-35638285 | None:intergenic | 35.0% | |
| ATATACTATACTACTCCCTC+CGG | + | chr5_2:35638314-35638333 | Msa0768850:intron | 35.0% | |
| AGTAAACTATATACTCCCTC+CGG | - | chr5_2:35638447-35638466 | None:intergenic | 35.0% | |
| GTTACACAACTTTATCACAG+TGG | + | chr5_2:35638753-35638772 | Msa0768850:intron | 35.0% | |
| !! | ATTGAACTGGTTGGTGAATT+TGG | - | chr5_2:35638791-35638810 | None:intergenic | 35.0% |
| ! | CTATAGTCTTGGAATATGCA+TGG | - | chr5_2:35638866-35638885 | None:intergenic | 35.0% |
| TTCTGTATGCTTATTTGTGC+AGG | + | chr5_2:35638907-35638926 | Msa0768850:intron | 35.0% | |
| CCATGGTAACTTTCTCTTCA+TGG | - | chr5_2:35637152-35637171 | None:intergenic | 40.0% | |
| CCATGAAGAGAAAGTTACCA+TGG | + | chr5_2:35637149-35637168 | Msa0768850:CDS | 40.0% | |
| AGAGAAAGTTACCATGGACT+TGG | + | chr5_2:35637155-35637174 | Msa0768850:CDS | 40.0% | |
| !! | TAACAGAGGTGTTGATCAGA+TGG | - | chr5_2:35637186-35637205 | None:intergenic | 40.0% |
| GGTGAAGTTTACATACAGCT+AGG | - | chr5_2:35637236-35637255 | None:intergenic | 40.0% | |
| TTATTGAACCTGGAGACTGA+GGG | - | chr5_2:35637635-35637654 | None:intergenic | 40.0% | |
| ATTATTGAACCTGGAGACTG+AGG | - | chr5_2:35637636-35637655 | None:intergenic | 40.0% | |
| ! | GTGAAGAAGAAGATGATGGT+TGG | - | chr5_2:35637888-35637907 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGAAGAAGATGA+TGG | - | chr5_2:35637892-35637911 | None:intergenic | 40.0% |
| ! | AGTGACTCAGTTGATGTAGT+TGG | - | chr5_2:35637910-35637929 | None:intergenic | 40.0% |
| ATGAAACGGTTGTATGCAGA+TGG | - | chr5_2:35638149-35638168 | None:intergenic | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr5_2:35638429-35638448 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr5_2:35638428-35638447 | None:intergenic | 40.0% | |
| TCAACAAAAGTCGATGGATC+TGG | - | chr5_2:35638400-35638419 | None:intergenic | 40.0% | |
| GTTAGGTCAACAAAAGTCGA+TGG | - | chr5_2:35638406-35638425 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr5_2:35638428-35638447 | Msa0768850:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr5_2:35638429-35638448 | Msa0768850:intron | 40.0% | |
| GTTGCAGAAATTGAACTGGT+TGG | - | chr5_2:35638800-35638819 | None:intergenic | 40.0% | |
| CCATGGTAACTTTCTCTTCA+TGG | - | chr5_2:35637152-35637171 | None:intergenic | 40.0% | |
| CCATGAAGAGAAAGTTACCA+TGG | + | chr5_2:35637149-35637168 | Msa0768850:CDS | 40.0% | |
| AGAGAAAGTTACCATGGACT+TGG | + | chr5_2:35637155-35637174 | Msa0768850:CDS | 40.0% | |
| !! | TAACAGAGGTGTTGATCAGA+TGG | - | chr5_2:35637186-35637205 | None:intergenic | 40.0% |
| GGTGAAGTTTACATACAGCT+AGG | - | chr5_2:35637236-35637255 | None:intergenic | 40.0% | |
| TTATTGAACCTGGAGACTGA+GGG | - | chr5_2:35637635-35637654 | None:intergenic | 40.0% | |
| ATTATTGAACCTGGAGACTG+AGG | - | chr5_2:35637636-35637655 | None:intergenic | 40.0% | |
| ! | GTGAAGAAGAAGATGATGGT+TGG | - | chr5_2:35637888-35637907 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGAAGAAGATGA+TGG | - | chr5_2:35637892-35637911 | None:intergenic | 40.0% |
| ! | AGTGACTCAGTTGATGTAGT+TGG | - | chr5_2:35637910-35637929 | None:intergenic | 40.0% |
| ATGAAACGGTTGTATGCAGA+TGG | - | chr5_2:35638149-35638168 | None:intergenic | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr5_2:35638429-35638448 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr5_2:35638428-35638447 | None:intergenic | 40.0% | |
| TCAACAAAAGTCGATGGATC+TGG | - | chr5_2:35638400-35638419 | None:intergenic | 40.0% | |
| GTTAGGTCAACAAAAGTCGA+TGG | - | chr5_2:35638406-35638425 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr5_2:35638428-35638447 | Msa0768850:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr5_2:35638429-35638448 | Msa0768850:intron | 40.0% | |
| GTTGCAGAAATTGAACTGGT+TGG | - | chr5_2:35638800-35638819 | None:intergenic | 40.0% | |
| AGTTGCAACGAACGTAACAG+AGG | - | chr5_2:35637200-35637219 | None:intergenic | 45.0% | |
| GATACTGTGACAGTGAAGTG+TGG | + | chr5_2:35637541-35637560 | Msa0768850:CDS | 45.0% | |
| GTCTTGTGGTGAGAAAAGAG+AGG | - | chr5_2:35637579-35637598 | None:intergenic | 45.0% | |
| ! | TTTGGAACTTGGTGGTCTTG+TGG | - | chr5_2:35637593-35637612 | None:intergenic | 45.0% |
| GGTTGTATGCAGATGGAAGA+CGG | - | chr5_2:35638142-35638161 | None:intergenic | 45.0% | |
| CACTGAAAGCTTCTCGATGT+GGG | - | chr5_2:35638565-35638584 | None:intergenic | 45.0% | |
| ! | CAACTTTATCACAGTGGGCT+AGG | + | chr5_2:35638759-35638778 | Msa0768850:intron | 45.0% |
| AGTTGCAACGAACGTAACAG+AGG | - | chr5_2:35637200-35637219 | None:intergenic | 45.0% | |
| GATACTGTGACAGTGAAGTG+TGG | + | chr5_2:35637541-35637560 | Msa0768850:CDS | 45.0% | |
| GTCTTGTGGTGAGAAAAGAG+AGG | - | chr5_2:35637579-35637598 | None:intergenic | 45.0% | |
| ! | TTTGGAACTTGGTGGTCTTG+TGG | - | chr5_2:35637593-35637612 | None:intergenic | 45.0% |
| GGTTGTATGCAGATGGAAGA+CGG | - | chr5_2:35638142-35638161 | None:intergenic | 45.0% | |
| CACTGAAAGCTTCTCGATGT+GGG | - | chr5_2:35638565-35638584 | None:intergenic | 45.0% | |
| ! | CAACTTTATCACAGTGGGCT+AGG | + | chr5_2:35638759-35638778 | Msa0768850:intron | 45.0% |
| !! | AGATGGTGGAACCAAGTCCA+TGG | - | chr5_2:35637169-35637188 | None:intergenic | 50.0% |
| !! | CAGAGGTGTTGATCAGATGG+TGG | - | chr5_2:35637183-35637202 | None:intergenic | 50.0% |
| AGGTTGGCATACCATGCAAG+AGG | + | chr5_2:35637512-35637531 | Msa0768850:intron | 50.0% | |
| GTATCTAGCAGCCTCTTGCA+TGG | - | chr5_2:35637526-35637545 | None:intergenic | 50.0% | |
| AACAAATGGCGGTGGTCTAG+GGG | - | chr5_2:35637935-35637954 | None:intergenic | 50.0% | |
| CAACAAATGGCGGTGGTCTA+GGG | - | chr5_2:35637936-35637955 | None:intergenic | 50.0% | |
| ACAACAAATGGCGGTGGTCT+AGG | - | chr5_2:35637937-35637956 | None:intergenic | 50.0% | |
| CGTTTGACAACAAATGGCGG+TGG | - | chr5_2:35637943-35637962 | None:intergenic | 50.0% | |
| CTTCTCGATGTGGGATCTGA+GGG | - | chr5_2:35638556-35638575 | None:intergenic | 50.0% | |
| GCACTGAAAGCTTCTCGATG+TGG | - | chr5_2:35638566-35638585 | None:intergenic | 50.0% | |
| !! | AGATGGTGGAACCAAGTCCA+TGG | - | chr5_2:35637169-35637188 | None:intergenic | 50.0% |
| !! | CAGAGGTGTTGATCAGATGG+TGG | - | chr5_2:35637183-35637202 | None:intergenic | 50.0% |
| AGGTTGGCATACCATGCAAG+AGG | + | chr5_2:35637512-35637531 | Msa0768850:intron | 50.0% | |
| GTATCTAGCAGCCTCTTGCA+TGG | - | chr5_2:35637526-35637545 | None:intergenic | 50.0% | |
| AACAAATGGCGGTGGTCTAG+GGG | - | chr5_2:35637935-35637954 | None:intergenic | 50.0% | |
| CAACAAATGGCGGTGGTCTA+GGG | - | chr5_2:35637936-35637955 | None:intergenic | 50.0% | |
| ACAACAAATGGCGGTGGTCT+AGG | - | chr5_2:35637937-35637956 | None:intergenic | 50.0% | |
| CGTTTGACAACAAATGGCGG+TGG | - | chr5_2:35637943-35637962 | None:intergenic | 50.0% | |
| CTTCTCGATGTGGGATCTGA+GGG | - | chr5_2:35638556-35638575 | None:intergenic | 50.0% | |
| GCACTGAAAGCTTCTCGATG+TGG | - | chr5_2:35638566-35638585 | None:intergenic | 50.0% | |
| TGATCACACCCTCAGTCTCC+AGG | + | chr5_2:35637624-35637643 | Msa0768850:CDS | 55.0% | |
| GGAAGACGGTGCTTCTTCTC+AGG | - | chr5_2:35638128-35638147 | None:intergenic | 55.0% | |
| TCGATGTGGGATCTGAGGGT+TGG | - | chr5_2:35638552-35638571 | None:intergenic | 55.0% | |
| GCTTCTCGATGTGGGATCTG+AGG | - | chr5_2:35638557-35638576 | None:intergenic | 55.0% | |
| TGATCACACCCTCAGTCTCC+AGG | + | chr5_2:35637624-35637643 | Msa0768850:CDS | 55.0% | |
| GGAAGACGGTGCTTCTTCTC+AGG | - | chr5_2:35638128-35638147 | None:intergenic | 55.0% | |
| TCGATGTGGGATCTGAGGGT+TGG | - | chr5_2:35638552-35638571 | None:intergenic | 55.0% | |
| GCTTCTCGATGTGGGATCTG+AGG | - | chr5_2:35638557-35638576 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 35637144 | 35638965 | 35637144 | ID=Msa0768850;Name=Msa0768850 |
| chr5_2 | mRNA | 35637144 | 35638965 | 35637144 | ID=Msa0768850-mRNA-1;Parent=Msa0768850;Name=Msa0768850-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0|0|0.8|1|0.8|5|0|138 |
| chr5_2 | exon | 35637144 | 35637239 | 35637144 | ID=Msa0768850-mRNA-1:exon:12094;Parent=Msa0768850-mRNA-1 |
| chr5_2 | exon | 35637514 | 35637645 | 35637514 | ID=Msa0768850-mRNA-1:exon:12095;Parent=Msa0768850-mRNA-1 |
| chr5_2 | exon | 35637862 | 35637961 | 35637862 | ID=Msa0768850-mRNA-1:exon:12096;Parent=Msa0768850-mRNA-1 |
| chr5_2 | exon | 35638123 | 35638171 | 35638123 | ID=Msa0768850-mRNA-1:exon:12097;Parent=Msa0768850-mRNA-1 |
| chr5_2 | exon | 35638929 | 35638965 | 35638929 | ID=Msa0768850-mRNA-1:exon:12098;Parent=Msa0768850-mRNA-1 |
| chr5_2 | CDS | 35637144 | 35637239 | 35637144 | ID=Msa0768850-mRNA-1:cds;Parent=Msa0768850-mRNA-1 |
| chr5_2 | CDS | 35637514 | 35637645 | 35637514 | ID=Msa0768850-mRNA-1:cds;Parent=Msa0768850-mRNA-1 |
| chr5_2 | CDS | 35637862 | 35637961 | 35637862 | ID=Msa0768850-mRNA-1:cds;Parent=Msa0768850-mRNA-1 |
| chr5_2 | CDS | 35638123 | 35638171 | 35638123 | ID=Msa0768850-mRNA-1:cds;Parent=Msa0768850-mRNA-1 |
| chr5_2 | CDS | 35638929 | 35638965 | 35638929 | ID=Msa0768850-mRNA-1:cds;Parent=Msa0768850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
