Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729580 | XP_039684542.1 | 74.510 | 51 | 13 | 0 | 30 | 80 | 212 | 262 | 2.47e-16 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729580 | G7LA66 | 67.347 | 49 | 16 | 0 | 99 | 147 | 13 | 61 | 8.70e-13 | 70.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107020 | Msa0729580 | 0.804706 | 1.899387e-49 | -8.615850e-47 |
| Msa0729580 | Msa1111600 | 0.810459 | 1.140731e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGGTGCAAGGGTTGTTAT+TGG | 0.279940 | 5_1:-37223737 | Msa0729580:CDS |
| TTGGATGACCCATGTCTGTT+AGG | 0.313990 | 5_1:-37223647 | Msa0729580:CDS |
| ACACAAGCAGTGCAAATAAC+AGG | 0.339261 | 5_1:+37224704 | None:intergenic |
| AGGTTTCTTAACCTCTTTCT+TGG | 0.356525 | 5_1:+37221595 | None:intergenic |
| ACTCTCCAAGACCTCATCTT+TGG | 0.363030 | 5_1:+37224653 | None:intergenic |
| GCAACTGAGGTTGATTGGTT+GGG | 0.368845 | 5_1:-37222389 | Msa0729580:CDS |
| GAAAGAGGTTAAGAAACCTT+TGG | 0.369343 | 5_1:-37221591 | Msa0729580:CDS |
| CAATCGCAACTGAGGTTGAT+TGG | 0.383380 | 5_1:-37222394 | Msa0729580:CDS |
| AAAGAGGTTAAGAAACCTTT+GGG | 0.391603 | 5_1:-37221590 | Msa0729580:CDS |
| TGATTACGTCAGTTGATAAC+TGG | 0.402349 | 5_1:-37221963 | Msa0729580:intron |
| TGGATGACCCATGTCTGTTA+GGG | 0.405619 | 5_1:-37223646 | Msa0729580:intron |
| ATTTAACCACATACCTGCTT+GGG | 0.406050 | 5_1:+37222296 | None:intergenic |
| AATGATTCGCACTTTAAGAT+AGG | 0.408197 | 5_1:-37223800 | Msa0729580:CDS |
| CGCAACTGAGGTTGATTGGT+TGG | 0.408665 | 5_1:-37222390 | Msa0729580:CDS |
| TTGTGATGGCTGGACTGAAA+TGG | 0.415111 | 5_1:-37222343 | Msa0729580:CDS |
| GTGTGGTTGGAAAGCGGCAC+AGG | 0.438612 | 5_1:-37224685 | Msa0729580:CDS |
| GTTATTGGAGCCCCTGGAGT+TGG | 0.443333 | 5_1:-37223722 | Msa0729580:CDS |
| AGGGTTGTTATTGGAGCCCC+TGG | 0.445848 | 5_1:-37223728 | Msa0729580:CDS |
| TGCACTCTCCAGTTTGTGTC+GGG | 0.459828 | 5_1:-37223824 | Msa0729580:intron |
| AGAAAATAGCCACATGAGTA+AGG | 0.462748 | 5_1:-37221549 | Msa0729580:CDS |
| GTCTCGTTTGAACCAACTCC+AGG | 0.467249 | 5_1:+37223710 | None:intergenic |
| ATTTGCACTGCTTGTGTGGT+TGG | 0.468289 | 5_1:-37224698 | Msa0729580:CDS |
| GATTTAACCACATACCTGCT+TGG | 0.468829 | 5_1:+37222295 | None:intergenic |
| AGGGACGATATGAGGATTAC+CGG | 0.476410 | 5_1:-37224741 | None:intergenic |
| TGTTATTTGCACTGCTTGTG+TGG | 0.507323 | 5_1:-37224702 | Msa0729580:CDS |
| CAACTGAGGTTGATTGGTTG+GGG | 0.511925 | 5_1:-37222388 | Msa0729580:CDS |
| AACACAATGCTCAAGGCTAC+AGG | 0.518099 | 5_1:-37223767 | Msa0729580:CDS |
| TCAGTTGATAACTGGAACAG+TGG | 0.528988 | 5_1:-37221955 | Msa0729580:intron |
| TAGCCACATGAGTAAGGTTG+AGG | 0.530109 | 5_1:-37221543 | Msa0729580:CDS |
| ACTTTAAGATAGGTGGTGCT+TGG | 0.537770 | 5_1:-37223790 | Msa0729580:CDS |
| CAGGACTTACAGAGGGTGCA+AGG | 0.538976 | 5_1:-37223748 | Msa0729580:CDS |
| CACAAGCAGTGCAAATAACA+GGG | 0.546740 | 5_1:+37224705 | None:intergenic |
| ATGAGGATTACCGGTGCTCA+AGG | 0.550612 | 5_1:-37224732 | Msa0729580:CDS |
| TTGAGCATCGGAGTGTCTGC+AGG | 0.550847 | 5_1:+37221922 | None:intergenic |
| ATGCACTCTCCAGTTTGTGT+CGG | 0.551751 | 5_1:-37223825 | Msa0729580:intron |
| CAGTTGATAACTGGAACAGT+GGG | 0.560555 | 5_1:-37221954 | Msa0729580:CDS |
| TCTCGTTTGAACCAACTCCA+GGG | 0.572138 | 5_1:+37223711 | None:intergenic |
| CATTGAGTTCAATCCCAAGC+AGG | 0.589547 | 5_1:-37222309 | Msa0729580:intron |
| CTGCTTGGGATTGAACTCAA+TGG | 0.594454 | 5_1:+37222310 | None:intergenic |
| TGTGAAATCAATCGCAACTG+AGG | 0.600161 | 5_1:-37222402 | Msa0729580:CDS |
| GGTTCAGAATCAAAACCCAA+AGG | 0.606239 | 5_1:+37221575 | None:intergenic |
| ACAGGGGAATCCTTGAGCAC+CGG | 0.609949 | 5_1:+37224722 | None:intergenic |
| ATAACAAAACAGCTAAGCGA+TGG | 0.610292 | 5_1:+37223669 | None:intergenic |
| CTCGTTTGAACCAACTCCAG+GGG | 0.622795 | 5_1:+37223712 | None:intergenic |
| TGCTTGGAACACAATGCTCA+AGG | 0.623265 | 5_1:-37223774 | Msa0729580:CDS |
| AGGACTTACAGAGGGTGCAA+GGG | 0.626167 | 5_1:-37223747 | Msa0729580:CDS |
| TCTCTTACTGACTTGAGCAT+CGG | 0.629083 | 5_1:+37221910 | None:intergenic |
| GATTCGCACTTTAAGATAGG+TGG | 0.631762 | 5_1:-37223797 | Msa0729580:CDS |
| CTGCTTGTGTGGTTGGAAAG+CGG | 0.632272 | 5_1:-37224691 | Msa0729580:CDS |
| GGGAAGCTATTCCAAAGATG+AGG | 0.641214 | 5_1:-37224664 | Msa0729580:intron |
| TGTGGTTGGAAAGCGGCACA+GGG | 0.641999 | 5_1:-37224684 | Msa0729580:CDS |
| GGGATTGAACTCAATGGTGA+AGG | 0.648157 | 5_1:+37222316 | None:intergenic |
| TATCCTCAACCTTACTCATG+TGG | 0.652819 | 5_1:+37221540 | None:intergenic |
| AAGGCTACAGGACTTACAGA+GGG | 0.680231 | 5_1:-37223755 | Msa0729580:CDS |
| CAAGGCTACAGGACTTACAG+AGG | 0.695846 | 5_1:-37223756 | Msa0729580:CDS |
| GAGTAAGGTTGAGGATAACG+AGG | 0.726926 | 5_1:-37221534 | Msa0729580:CDS |
| ACAAGCAGTGCAAATAACAG+GGG | 0.745311 | 5_1:+37224706 | None:intergenic |
| AGTTGATAACTGGAACAGTG+GGG | 0.753728 | 5_1:-37221953 | Msa0729580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAAATTATTATTTTACTT+AGG | - | chr5_1:37221921-37221940 | Msa0729580:CDS | 10.0% |
| !! | TAATATACAAAATTAAACAA+AGG | + | chr5_1:37222088-37222107 | None:intergenic | 10.0% |
| !!! | TTTAATTTTGTATATTACTT+TGG | - | chr5_1:37222091-37222110 | Msa0729580:intron | 10.0% |
| !! | TATTATTATGAAATTGAATA+CGG | - | chr5_1:37223343-37223362 | Msa0729580:intron | 10.0% |
| !!! | TTTATGTTTATCCATTTTAT+TGG | - | chr5_1:37221738-37221757 | Msa0729580:intron | 15.0% |
| !!! | TTATGTTTATCCATTTTATT+GGG | - | chr5_1:37221739-37221758 | Msa0729580:intron | 15.0% |
| !! | TTAAAAAAAGCAAGTAATTA+TGG | + | chr5_1:37221883-37221902 | None:intergenic | 15.0% |
| !!! | TTTATTTAAAATTCACTATG+AGG | + | chr5_1:37222027-37222046 | None:intergenic | 15.0% |
| !!! | TGAATTTTATAAATATAGCT+TGG | + | chr5_1:37222061-37222080 | None:intergenic | 15.0% |
| !!! | TGCATTATATGTTTTTATTT+TGG | - | chr5_1:37222314-37222333 | Msa0729580:CDS | 15.0% |
| !!! | ATTATATGTTTTTATTTTGG+TGG | - | chr5_1:37222317-37222336 | Msa0729580:CDS | 15.0% |
| !!! | TATTGTTGTTATGTTATAAA+AGG | - | chr5_1:37223639-37223658 | Msa0729580:intron | 15.0% |
| !!! | ATTGTTGTTATGTTATAAAA+GGG | - | chr5_1:37223640-37223659 | Msa0729580:intron | 15.0% |
| !! | AAATAATAAGTAATTCTGAA+AGG | + | chr5_1:37223836-37223855 | None:intergenic | 15.0% |
| !! | TTGAAATTATCCCAATAAAA+TGG | + | chr5_1:37221752-37221771 | None:intergenic | 20.0% |
| !!! | CAAGAAGGATATTTATTTTT+TGG | - | chr5_1:37222142-37222161 | Msa0729580:intron | 20.0% |
| !!! | ATGATTTAAACGTTTGATTT+GGG | + | chr5_1:37222887-37222906 | None:intergenic | 20.0% |
| !!! | AAACACACTTTTTTAAATTG+CGG | + | chr5_1:37223071-37223090 | None:intergenic | 20.0% |
| !! | TAAAAGCAAATTAGATAAGA+AGG | - | chr5_1:37223153-37223172 | Msa0729580:intron | 20.0% |
| !! | TGTTTCAATCATATAAAAAG+TGG | + | chr5_1:37223308-37223327 | None:intergenic | 20.0% |
| !!! | TTTAAAGCTTCATAAGTAAA+CGG | + | chr5_1:37223382-37223401 | None:intergenic | 20.0% |
| !! | TATTTGTACATTAACTGATT+GGG | + | chr5_1:37223573-37223592 | None:intergenic | 20.0% |
| !! | ATATTTGTACATTAACTGAT+TGG | + | chr5_1:37223574-37223593 | None:intergenic | 20.0% |
| !! | AGAAAAAATGTTAAGGTAAT+AGG | + | chr5_1:37223789-37223808 | None:intergenic | 20.0% |
| !! | CATAAAGAGAAAAAATGTTA+AGG | + | chr5_1:37223796-37223815 | None:intergenic | 20.0% |
| !!! | AATATAATGTCTTTTTAGAG+AGG | + | chr5_1:37224225-37224244 | None:intergenic | 20.0% |
| !! | TTGATATCTATATCAGCTTT+TGG | - | chr5_1:37221639-37221658 | Msa0729580:intron | 25.0% |
| !! | TGATATCTATATCAGCTTTT+GGG | - | chr5_1:37221640-37221659 | Msa0729580:intron | 25.0% |
| !! | ATTATTCAAGTTACACTATG+AGG | + | chr5_1:37221791-37221810 | None:intergenic | 25.0% |
| ! | AAATAAGGCTAATATCAATC+TGG | - | chr5_1:37221853-37221872 | Msa0729580:intron | 25.0% |
| ! | AATAAGGCTAATATCAATCT+GGG | - | chr5_1:37221854-37221873 | Msa0729580:intron | 25.0% |
| !!! | TTGAAAGTATCCTAATGATT+GGG | + | chr5_1:37221963-37221982 | None:intergenic | 25.0% |
| !!! | TTTGAAAGTATCCTAATGAT+TGG | + | chr5_1:37221964-37221983 | None:intergenic | 25.0% |
| !! | ATTTAAAATTCACTATGAGG+AGG | + | chr5_1:37222024-37222043 | None:intergenic | 25.0% |
| ! | CATGATTTAAACGTTTGATT+TGG | + | chr5_1:37222888-37222907 | None:intergenic | 25.0% |
| ! | GATATTATAAGATGGTACAA+TGG | - | chr5_1:37223129-37223148 | Msa0729580:intron | 25.0% |
| ! | TGATTGAAACATATCAGTTA+TGG | - | chr5_1:37223317-37223336 | Msa0729580:intron | 25.0% |
| ! | TTAGATTACCTTTGTCTTTA+TGG | - | chr5_1:37223489-37223508 | Msa0729580:intron | 25.0% |
| ! | TGATCATTACTAACTAACAT+TGG | + | chr5_1:37223530-37223549 | None:intergenic | 25.0% |
| ! | ATTTGTACATTAACTGATTG+GGG | + | chr5_1:37223572-37223591 | None:intergenic | 25.0% |
| ! | AAGCATTAACCATCAATTAT+GGG | + | chr5_1:37223602-37223621 | None:intergenic | 25.0% |
| ! | TAAGCATTAACCATCAATTA+TGG | + | chr5_1:37223603-37223622 | None:intergenic | 25.0% |
| ! | ATGCTTATTATTATTCCCAA+TGG | - | chr5_1:37223616-37223635 | Msa0729580:intron | 25.0% |
| ! | AACATAACAACAATACCATT+GGG | + | chr5_1:37223634-37223653 | None:intergenic | 25.0% |
| ! | TAACATAACAACAATACCAT+TGG | + | chr5_1:37223635-37223654 | None:intergenic | 25.0% |
| !! | CAACATCTTATAAGCATTTT+AGG | - | chr5_1:37223675-37223694 | Msa0729580:CDS | 25.0% |
| !! | ATCAATGTGTATTCAGTTTT+TGG | - | chr5_1:37223983-37224002 | Msa0729580:intron | 25.0% |
| !!! | TTTTTGGTTAGTACACTTAA+AGG | - | chr5_1:37223999-37224018 | Msa0729580:intron | 25.0% |
| !!! | TATATAGTGTTTTGTTGCTA+AGG | + | chr5_1:37224182-37224201 | None:intergenic | 25.0% |
| ! | ACATTATATTTGATCTTACC+TGG | - | chr5_1:37224235-37224254 | Msa0729580:intron | 25.0% |
| ! | AAATAGTCCCCTTTATATAA+AGG | - | chr5_1:37224418-37224437 | Msa0729580:intron | 25.0% |
| TAGAGAGACAACTATTCTTA+TGG | - | chr5_1:37221820-37221839 | Msa0729580:intron | 30.0% | |
| AGAGAGACAACTATTCTTAT+GGG | - | chr5_1:37221821-37221840 | Msa0729580:intron | 30.0% | |
| ! | TCTTTGTTTACCCAATCATT+AGG | - | chr5_1:37221950-37221969 | Msa0729580:CDS | 30.0% |
| AGCAATCACATAACTCAAAA+AGG | + | chr5_1:37222215-37222234 | None:intergenic | 30.0% | |
| !! | AATGATTCGCACTTTAAGAT+AGG | - | chr5_1:37222458-37222477 | Msa0729580:intron | 30.0% |
| TTGACAGAAAATTGAAAAGC+AGG | + | chr5_1:37222649-37222668 | None:intergenic | 30.0% | |
| TTCGAACAATGTTAGATCTT+TGG | - | chr5_1:37222727-37222746 | Msa0729580:intron | 30.0% | |
| TTGATATCAAGAACAACGTA+TGG | + | chr5_1:37222811-37222830 | None:intergenic | 30.0% | |
| !! | ATCAAAGAAGTATTCATGCA+CGG | + | chr5_1:37222954-37222973 | None:intergenic | 30.0% |
| GCAAGACTTTCAATAAATTG+CGG | + | chr5_1:37223001-37223020 | None:intergenic | 30.0% | |
| GCAATGATGATTATACAATG+TGG | + | chr5_1:37223042-37223061 | None:intergenic | 30.0% | |
| TACCATCTTATAATATCCTG+CGG | + | chr5_1:37223126-37223145 | None:intergenic | 30.0% | |
| AATATGAGTCAAGTAGTATC+AGG | - | chr5_1:37223260-37223279 | Msa0729580:intron | 30.0% | |
| TCTAACAGACATTGGAAAAA+GGG | + | chr5_1:37223474-37223493 | None:intergenic | 30.0% | |
| ATCTAACAGACATTGGAAAA+AGG | + | chr5_1:37223475-37223494 | None:intergenic | 30.0% | |
| AAAGGTAATCTAACAGACAT+TGG | + | chr5_1:37223482-37223501 | None:intergenic | 30.0% | |
| TTTGTACATTAACTGATTGG+GGG | + | chr5_1:37223571-37223590 | None:intergenic | 30.0% | |
| ATATATGTGCCCATAATTGA+TGG | - | chr5_1:37223590-37223609 | Msa0729580:intron | 30.0% | |
| ! | TGATGATAGTCTTTTTGTGA+TGG | - | chr5_1:37223901-37223920 | Msa0729580:intron | 30.0% |
| ! | TGTGTATCAATCAAAAGTGT+TGG | + | chr5_1:37224069-37224088 | None:intergenic | 30.0% |
| AACACCCACCTTTATATAAA+GGG | + | chr5_1:37224429-37224448 | None:intergenic | 30.0% | |
| AAACACCCACCTTTATATAA+AGG | + | chr5_1:37224430-37224449 | None:intergenic | 30.0% | |
| AATATTGTCAAAGTGAAGAG+AGG | - | chr5_1:37224617-37224636 | Msa0729580:intron | 30.0% | |
| ! | TTTTTATAGTGCCAAGAAAG+AGG | - | chr5_1:37224652-37224671 | Msa0729580:intron | 30.0% |
| AAAGAGGTTAAGAAACCTTT+GGG | - | chr5_1:37224668-37224687 | Msa0729580:CDS | 30.0% | |
| ! | ATTCAAGTTACACTATGAGG+AGG | + | chr5_1:37221788-37221807 | None:intergenic | 35.0% |
| AGACAACTATTCTTATGGGT+GGG | - | chr5_1:37221825-37221844 | Msa0729580:intron | 35.0% | |
| TATGGGTGGGTAAACAAATA+AGG | - | chr5_1:37221838-37221857 | Msa0729580:intron | 35.0% | |
| AAACACATGCCCAAAAAACA+CGG | - | chr5_1:37221981-37222000 | Msa0729580:intron | 35.0% | |
| AAAATTCACTATGAGGAGGA+AGG | + | chr5_1:37222020-37222039 | None:intergenic | 35.0% | |
| TGATGCATCTATCTTCAAGA+AGG | - | chr5_1:37222127-37222146 | Msa0729580:intron | 35.0% | |
| ACAAAGAAATAGTCGACACT+TGG | + | chr5_1:37222181-37222200 | None:intergenic | 35.0% | |
| !!! | GGGCGAATAAAGATTTTTTG+TGG | + | chr5_1:37222370-37222389 | None:intergenic | 35.0% |
| ATAACAAAACAGCTAAGCGA+TGG | + | chr5_1:37222592-37222611 | None:intergenic | 35.0% | |
| !! | TCGCTTAGCTGTTTTGTTAT+TGG | - | chr5_1:37222592-37222611 | Msa0729580:intron | 35.0% |
| AGAAAAACCCTAACAGACAT+GGG | + | chr5_1:37222622-37222641 | None:intergenic | 35.0% | |
| AAGAAAAACCCTAACAGACA+TGG | + | chr5_1:37222623-37222642 | None:intergenic | 35.0% | |
| ! | CAATTTTCTGTCAATGCTTC+TGG | - | chr5_1:37222655-37222674 | Msa0729580:intron | 35.0% |
| AAATTGCGGTGATTCAATAG+TGG | + | chr5_1:37222987-37223006 | None:intergenic | 35.0% | |
| TTATTGAAAGTCTTGCAACC+TGG | - | chr5_1:37223005-37223024 | Msa0729580:intron | 35.0% | |
| AATGTGGTTAATTATCTGCC+AGG | + | chr5_1:37223026-37223045 | None:intergenic | 35.0% | |
| ATGTGCATTCACCTCAAAAA+GGG | - | chr5_1:37223427-37223446 | Msa0729580:intron | 35.0% | |
| AACAGTCACCATAAAGACAA+AGG | + | chr5_1:37223500-37223519 | None:intergenic | 35.0% | |
| ATTTAACCACATACCTGCTT+GGG | + | chr5_1:37223965-37223984 | None:intergenic | 35.0% | |
| !! | TGATTACGTCAGTTGATAAC+TGG | - | chr5_1:37224295-37224314 | Msa0729580:intron | 35.0% |
| TCAGTAAGAGATCAGAATGA+GGG | - | chr5_1:37224360-37224379 | Msa0729580:intron | 35.0% | |
| AGAGAGGTTAGATTATACCT+TGG | - | chr5_1:37224388-37224407 | Msa0729580:intron | 35.0% | |
| GAGAGGTTAGATTATACCTT+GGG | - | chr5_1:37224389-37224408 | Msa0729580:intron | 35.0% | |
| AGAGGTTAGATTATACCTTG+GGG | - | chr5_1:37224390-37224409 | Msa0729580:intron | 35.0% | |
| TAGTCCCCTTTATATAAAGG+TGG | - | chr5_1:37224421-37224440 | Msa0729580:intron | 35.0% | |
| AGTCCCCTTTATATAAAGGT+GGG | - | chr5_1:37224422-37224441 | Msa0729580:intron | 35.0% | |
| ACACCCACCTTTATATAAAG+GGG | + | chr5_1:37224428-37224447 | None:intergenic | 35.0% | |
| ! | CATAAGAAGTGTAACAACTG+AGG | - | chr5_1:37224494-37224513 | Msa0729580:intron | 35.0% |
| AACAATAACGATCACCATCA+TGG | + | chr5_1:37224535-37224554 | None:intergenic | 35.0% | |
| AGGTTTCTTAACCTCTTTCT+TGG | + | chr5_1:37224666-37224685 | None:intergenic | 35.0% | |
| GAAAGAGGTTAAGAAACCTT+TGG | - | chr5_1:37224667-37224686 | Msa0729580:CDS | 35.0% | |
| !! | CTCATGTGGCTATTTTCTAT+TGG | + | chr5_1:37224707-37224726 | None:intergenic | 35.0% |
| AGAAAATAGCCACATGAGTA+AGG | - | chr5_1:37224709-37224728 | Msa0729580:CDS | 35.0% | |
| ACAAGCAGTGCAAATAACAG+GGG | + | chr5_1:37221555-37221574 | None:intergenic | 40.0% | |
| CACAAGCAGTGCAAATAACA+GGG | + | chr5_1:37221556-37221575 | None:intergenic | 40.0% | |
| ACACAAGCAGTGCAAATAAC+AGG | + | chr5_1:37221557-37221576 | None:intergenic | 40.0% | |
| ! | TGTTATTTGCACTGCTTGTG+TGG | - | chr5_1:37221556-37221575 | Msa0729580:CDS | 40.0% |
| CTATTCCAAAGATGAGGTCT+TGG | - | chr5_1:37221600-37221619 | Msa0729580:CDS | 40.0% | |
| TTACACTATGAGGAGGTTTG+GGG | + | chr5_1:37221781-37221800 | None:intergenic | 40.0% | |
| GTTACACTATGAGGAGGTTT+GGG | + | chr5_1:37221782-37221801 | None:intergenic | 40.0% | |
| AGTTACACTATGAGGAGGTT+TGG | + | chr5_1:37221783-37221802 | None:intergenic | 40.0% | |
| GAGACAACTATTCTTATGGG+TGG | - | chr5_1:37221824-37221843 | Msa0729580:intron | 40.0% | |
| AACACATGCCCAAAAAACAC+GGG | - | chr5_1:37221982-37222001 | Msa0729580:intron | 40.0% | |
| GAAATAGTCGACACTTGGAA+GGG | + | chr5_1:37222176-37222195 | None:intergenic | 40.0% | |
| AGAAATAGTCGACACTTGGA+AGG | + | chr5_1:37222177-37222196 | None:intergenic | 40.0% | |
| !! | GATTCGCACTTTAAGATAGG+TGG | - | chr5_1:37222461-37222480 | Msa0729580:intron | 40.0% |
| !! | ACTTTAAGATAGGTGGTGCT+TGG | - | chr5_1:37222468-37222487 | Msa0729580:intron | 40.0% |
| CACCGCAGGATATTATAAGA+TGG | - | chr5_1:37223121-37223140 | Msa0729580:intron | 40.0% | |
| TGAGTCAAGTAGTATCAGGA+TGG | - | chr5_1:37223264-37223283 | Msa0729580:intron | 40.0% | |
| CATGTGCATTCACCTCAAAA+AGG | - | chr5_1:37223426-37223445 | Msa0729580:intron | 40.0% | |
| TGTGCATTCACCTCAAAAAG+GGG | - | chr5_1:37223428-37223447 | Msa0729580:intron | 40.0% | |
| ! | TTTGTAACCTCCCCTTTTTG+AGG | + | chr5_1:37223441-37223460 | None:intergenic | 40.0% |
| AGCAGCTTTACCTCTATCAA+TGG | - | chr5_1:37223703-37223722 | Msa0729580:CDS | 40.0% | |
| ATGTCGAATGCCATTGATAG+AGG | + | chr5_1:37223716-37223735 | None:intergenic | 40.0% | |
| TGTGAAATCAATCGCAACTG+AGG | - | chr5_1:37223856-37223875 | Msa0729580:intron | 40.0% | |
| ! | GATAGTCTTTTTGTGATGGC+TGG | - | chr5_1:37223905-37223924 | Msa0729580:intron | 40.0% |
| GATTTAACCACATACCTGCT+TGG | + | chr5_1:37223966-37223985 | None:intergenic | 40.0% | |
| CTGTCATGCCTAAATGTAAC+AGG | - | chr5_1:37224029-37224048 | Msa0729580:intron | 40.0% | |
| CACGCTATCCTGTTACATTT+AGG | + | chr5_1:37224040-37224059 | None:intergenic | 40.0% | |
| GTAAATGTTTATGACCCGTG+CGG | - | chr5_1:37224122-37224141 | Msa0729580:intron | 40.0% | |
| TTTGATCTTACCTGGTCAGA+AGG | - | chr5_1:37224243-37224262 | Msa0729580:intron | 40.0% | |
| TCGGTGTAGTTCTTATACGA+CGG | - | chr5_1:37224272-37224291 | Msa0729580:intron | 40.0% | |
| !! | TCAGTTGATAACTGGAACAG+TGG | - | chr5_1:37224303-37224322 | Msa0729580:intron | 40.0% |
| !! | CAGTTGATAACTGGAACAGT+GGG | - | chr5_1:37224304-37224323 | Msa0729580:intron | 40.0% |
| !! | AGTTGATAACTGGAACAGTG+GGG | - | chr5_1:37224305-37224324 | Msa0729580:intron | 40.0% |
| !! | TCTCTTACTGACTTGAGCAT+CGG | + | chr5_1:37224351-37224370 | None:intergenic | 40.0% |
| GTCAGTAAGAGATCAGAATG+AGG | - | chr5_1:37224359-37224378 | Msa0729580:intron | 40.0% | |
| AGCACACATGTGACTTACAA+CGG | + | chr5_1:37224459-37224478 | None:intergenic | 40.0% | |
| GGTTCAGAATCAAAACCCAA+AGG | + | chr5_1:37224686-37224705 | None:intergenic | 40.0% | |
| TATCCTCAACCTTACTCATG+TGG | + | chr5_1:37224721-37224740 | None:intergenic | 40.0% | |
| ATTTGCACTGCTTGTGTGGT+TGG | - | chr5_1:37221560-37221579 | Msa0729580:CDS | 45.0% | |
| GGGAAGCTATTCCAAAGATG+AGG | - | chr5_1:37221594-37221613 | Msa0729580:CDS | 45.0% | |
| ACTCTCCAAGACCTCATCTT+TGG | + | chr5_1:37221608-37221627 | None:intergenic | 45.0% | |
| !!! | GTAAGCCTCCCGTGTTTTTT+GGG | + | chr5_1:37221993-37222012 | None:intergenic | 45.0% |
| CAAAAAACACGGGAGGCTTA+CGG | - | chr5_1:37221992-37222011 | Msa0729580:intron | 45.0% | |
| ATGCACTCTCCAGTTTGTGT+CGG | - | chr5_1:37222433-37222452 | Msa0729580:intron | 45.0% | |
| AATCATTGCCCGACACAAAC+TGG | + | chr5_1:37222445-37222464 | None:intergenic | 45.0% | |
| TGCTTGGAACACAATGCTCA+AGG | - | chr5_1:37222484-37222503 | Msa0729580:intron | 45.0% | |
| AACACAATGCTCAAGGCTAC+AGG | - | chr5_1:37222491-37222510 | Msa0729580:intron | 45.0% | |
| AAGGCTACAGGACTTACAGA+GGG | - | chr5_1:37222503-37222522 | Msa0729580:intron | 45.0% | |
| TCTCGTTTGAACCAACTCCA+GGG | + | chr5_1:37222550-37222569 | None:intergenic | 45.0% | |
| TTGGATGACCCATGTCTGTT+AGG | - | chr5_1:37222611-37222630 | Msa0729580:intron | 45.0% | |
| TGGATGACCCATGTCTGTTA+GGG | - | chr5_1:37222612-37222631 | Msa0729580:intron | 45.0% | |
| ! | CAATCGCAACTGAGGTTGAT+TGG | - | chr5_1:37223864-37223883 | Msa0729580:intron | 45.0% |
| ! | GCAACTGAGGTTGATTGGTT+GGG | - | chr5_1:37223869-37223888 | Msa0729580:intron | 45.0% |
| ! | CAACTGAGGTTGATTGGTTG+GGG | - | chr5_1:37223870-37223889 | Msa0729580:intron | 45.0% |
| TTGTGATGGCTGGACTGAAA+TGG | - | chr5_1:37223915-37223934 | Msa0729580:intron | 45.0% | |
| GGGATTGAACTCAATGGTGA+AGG | + | chr5_1:37223945-37223964 | None:intergenic | 45.0% | |
| CTGCTTGGGATTGAACTCAA+TGG | + | chr5_1:37223951-37223970 | None:intergenic | 45.0% | |
| CATTGAGTTCAATCCCAAGC+AGG | - | chr5_1:37223949-37223968 | Msa0729580:intron | 45.0% | |
| TTCAATCCCAAGCAGGTATG+TGG | - | chr5_1:37223956-37223975 | Msa0729580:intron | 45.0% | |
| CAGAATGAGGGTTTACAGAG+AGG | - | chr5_1:37224372-37224391 | Msa0729580:intron | 45.0% | |
| AACAACTGAGGAGAGATTCG+TGG | - | chr5_1:37224506-37224525 | Msa0729580:intron | 45.0% | |
| ACAACTGAGGAGAGATTCGT+GGG | - | chr5_1:37224507-37224526 | Msa0729580:intron | 45.0% | |
| TAGCCACATGAGTAAGGTTG+AGG | - | chr5_1:37224715-37224734 | Msa0729580:CDS | 45.0% | |
| GAGTAAGGTTGAGGATAACG+AGG | - | chr5_1:37224724-37224743 | Msa0729580:CDS | 45.0% | |
| !! | GATTAATTAAAATAAAATAA+AGG | + | chr5_1:37221676-37221695 | None:intergenic | 5.0% |
| ATGAGGATTACCGGTGCTCA+AGG | - | chr5_1:37221526-37221545 | Msa0729580:CDS | 50.0% | |
| CTGCTTGTGTGGTTGGAAAG+CGG | - | chr5_1:37221567-37221586 | Msa0729580:CDS | 50.0% | |
| ACATGCCCAAAAAACACGGG+AGG | - | chr5_1:37221985-37222004 | Msa0729580:intron | 50.0% | |
| !!! | CGTAAGCCTCCCGTGTTTTT+TGG | + | chr5_1:37221994-37222013 | None:intergenic | 50.0% |
| GCACGGGTGGAAAAACTAGT+AGG | - | chr5_1:37222405-37222424 | Msa0729580:CDS | 50.0% | |
| CGGGTGGAAAAACTAGTAGG+TGG | - | chr5_1:37222408-37222427 | Msa0729580:CDS | 50.0% | |
| TGCACTCTCCAGTTTGTGTC+GGG | - | chr5_1:37222434-37222453 | Msa0729580:intron | 50.0% | |
| CAAGGCTACAGGACTTACAG+AGG | - | chr5_1:37222502-37222521 | Msa0729580:intron | 50.0% | |
| ! | AGGACTTACAGAGGGTGCAA+GGG | - | chr5_1:37222511-37222530 | Msa0729580:intron | 50.0% |
| ! | GAGGGTGCAAGGGTTGTTAT+TGG | - | chr5_1:37222521-37222540 | Msa0729580:intron | 50.0% |
| CTCGTTTGAACCAACTCCAG+GGG | + | chr5_1:37222549-37222568 | None:intergenic | 50.0% | |
| GTCTCGTTTGAACCAACTCC+AGG | + | chr5_1:37222551-37222570 | None:intergenic | 50.0% | |
| TATCCTGCGGTGACTAGCAA+TGG | + | chr5_1:37223113-37223132 | None:intergenic | 50.0% | |
| GCATTCACCTCAAAAAGGGG+AGG | - | chr5_1:37223431-37223450 | Msa0729580:intron | 50.0% | |
| TCTGCTCTGTACAGTCTCAG+AGG | - | chr5_1:37223752-37223771 | Msa0729580:CDS | 50.0% | |
| ! | CGCAACTGAGGTTGATTGGT+TGG | - | chr5_1:37223868-37223887 | Msa0729580:intron | 50.0% |
| CCTGGTCAGAAGGTGACTAT+CGG | - | chr5_1:37224253-37224272 | Msa0729580:intron | 50.0% | |
| GGGACTATTTGCATTCCCCA+AGG | + | chr5_1:37224408-37224427 | None:intergenic | 50.0% | |
| ACAGGGGAATCCTTGAGCAC+CGG | + | chr5_1:37221539-37221558 | None:intergenic | 55.0% | |
| TGTGGTTGGAAAGCGGCACA+GGG | - | chr5_1:37221574-37221593 | Msa0729580:CDS | 55.0% | |
| ! | TTTTCCACCCGTGCAACGCA+CGG | + | chr5_1:37222399-37222418 | None:intergenic | 55.0% |
| ! | CAGGACTTACAGAGGGTGCA+AGG | - | chr5_1:37222510-37222529 | Msa0729580:intron | 55.0% |
| ! | AGGGTTGTTATTGGAGCCCC+TGG | - | chr5_1:37222530-37222549 | Msa0729580:intron | 55.0% |
| GTTATTGGAGCCCCTGGAGT+TGG | - | chr5_1:37222536-37222555 | Msa0729580:intron | 55.0% | |
| CTTCCATTGCTAGTCACCGC+AGG | - | chr5_1:37223107-37223126 | Msa0729580:intron | 55.0% | |
| CCGATAGTCACCTTCTGACC+AGG | + | chr5_1:37224256-37224275 | None:intergenic | 55.0% | |
| !! | TTGAGCATCGGAGTGTCTGC+AGG | + | chr5_1:37224339-37224358 | None:intergenic | 55.0% |
| GAGATTCGTGGGAGCCATGA+TGG | - | chr5_1:37224518-37224537 | Msa0729580:intron | 55.0% | |
| GTGTGGTTGGAAAGCGGCAC+AGG | - | chr5_1:37221573-37221592 | Msa0729580:CDS | 60.0% | |
| TTTCCACCCGTGCAACGCAC+GGG | + | chr5_1:37222398-37222417 | None:intergenic | 60.0% | |
| TTCTACCTGTGCTGCCGCAC+GGG | + | chr5_1:37224139-37224158 | None:intergenic | 60.0% | |
| CTTCTACCTGTGCTGCCGCA+CGG | + | chr5_1:37224140-37224159 | None:intergenic | 60.0% | |
| ACACACTCTCTCCCCGCGAA+GGG | + | chr5_1:37224590-37224609 | None:intergenic | 60.0% | |
| AACACACTCTCTCCCCGCGA+AGG | + | chr5_1:37224591-37224610 | None:intergenic | 60.0% | |
| CGTGCAACGCACGGGCAAAC+GGG | + | chr5_1:37222390-37222409 | None:intergenic | 65.0% | |
| CCGTGCAACGCACGGGCAAA+CGG | + | chr5_1:37222391-37222410 | None:intergenic | 65.0% | |
| CCGTTTGCCCGTGCGTTGCA+CGG | - | chr5_1:37222388-37222407 | Msa0729580:CDS | 65.0% | |
| CGTTTGCCCGTGCGTTGCAC+GGG | - | chr5_1:37222389-37222408 | Msa0729580:CDS | 65.0% | |
| TATGACCCGTGCGGCAGCAC+AGG | - | chr5_1:37224131-37224150 | Msa0729580:intron | 65.0% | |
| ACACTCTCTCCCCGCGAAGG+GGG | + | chr5_1:37224588-37224607 | None:intergenic | 65.0% | |
| CACACTCTCTCCCCGCGAAG+GGG | + | chr5_1:37224589-37224608 | None:intergenic | 65.0% | |
| TTGCCCGTGCGTTGCACGGG+TGG | - | chr5_1:37222392-37222411 | Msa0729580:CDS | 70.0% | |
| TGCTCCGAGCACCCCCTTCG+CGG | - | chr5_1:37224574-37224593 | Msa0729580:intron | 70.0% | |
| GCTCCGAGCACCCCCTTCGC+GGG | - | chr5_1:37224575-37224594 | Msa0729580:intron | 75.0% | |
| CTCCGAGCACCCCCTTCGCG+GGG | - | chr5_1:37224576-37224595 | Msa0729580:intron | 75.0% | |
| !! | CTCCCCGCGAAGGGGGTGCT+CGG | + | chr5_1:37224581-37224600 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 37221526 | 37224754 | 37221526 | ID=Msa0729580;Name=Msa0729580 |
| chr5_1 | mRNA | 37221526 | 37224754 | 37221526 | ID=Msa0729580-mRNA-1;Parent=Msa0729580;Name=Msa0729580-mRNA-1;_AED=0.70;_eAED=0.82;_QI=0|0|0|0.4|1|1|5|0|185 |
| chr5_1 | exon | 37224665 | 37224754 | 37224665 | ID=Msa0729580-mRNA-1:exon:11262;Parent=Msa0729580-mRNA-1 |
| chr5_1 | exon | 37223647 | 37223834 | 37223647 | ID=Msa0729580-mRNA-1:exon:11261;Parent=Msa0729580-mRNA-1 |
| chr5_1 | exon | 37222310 | 37222439 | 37222310 | ID=Msa0729580-mRNA-1:exon:11260;Parent=Msa0729580-mRNA-1 |
| chr5_1 | exon | 37221918 | 37221973 | 37221918 | ID=Msa0729580-mRNA-1:exon:11259;Parent=Msa0729580-mRNA-1 |
| chr5_1 | exon | 37221526 | 37221619 | 37221526 | ID=Msa0729580-mRNA-1:exon:11258;Parent=Msa0729580-mRNA-1 |
| chr5_1 | CDS | 37224665 | 37224754 | 37224665 | ID=Msa0729580-mRNA-1:cds;Parent=Msa0729580-mRNA-1 |
| chr5_1 | CDS | 37223647 | 37223834 | 37223647 | ID=Msa0729580-mRNA-1:cds;Parent=Msa0729580-mRNA-1 |
| chr5_1 | CDS | 37222310 | 37222439 | 37222310 | ID=Msa0729580-mRNA-1:cds;Parent=Msa0729580-mRNA-1 |
| chr5_1 | CDS | 37221918 | 37221973 | 37221918 | ID=Msa0729580-mRNA-1:cds;Parent=Msa0729580-mRNA-1 |
| chr5_1 | CDS | 37221526 | 37221619 | 37221526 | ID=Msa0729580-mRNA-1:cds;Parent=Msa0729580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
