Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111600 | KEH32645.1 | 75.758 | 66 | 10 | 3 | 71 | 133 | 1 | 63 | 3.82e-21 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111600 | A0A072V3A9 | 75.758 | 66 | 10 | 3 | 71 | 133 | 1 | 63 | 1.82e-21 | 91.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1111600 | 0.813640 | 2.310467e-51 | -8.615850e-47 |
| Msa0028640 | Msa1111600 | 0.803586 | 3.247676e-49 | -8.615850e-47 |
| Msa0729580 | Msa1111600 | 0.810459 | 1.140731e-50 | -8.615850e-47 |
| Msa0157290 | Msa1111600 | 0.814084 | 1.844570e-51 | -8.615850e-47 |
| Msa0200260 | Msa1111600 | 0.813625 | 2.328525e-51 | -8.615850e-47 |
| Msa1074510 | Msa1111600 | 0.829359 | 5.380120e-55 | -8.615850e-47 |
| Msa1111600 | Msa1151940 | 0.830381 | 3.032924e-55 | -8.615850e-47 |
| Msa1111600 | Msa1182910 | 0.870180 | 1.773216e-66 | -8.615850e-47 |
| Msa1111600 | Msa1252140 | 0.801593 | 8.369287e-49 | -8.615850e-47 |
| Msa1111600 | Msa1311210 | 0.855380 | 6.559279e-62 | -8.615850e-47 |
| Msa1111600 | Msa1357310 | 0.897510 | 1.311004e-76 | -8.615850e-47 |
| Msa1111600 | Msa1438250 | 0.803601 | 3.225448e-49 | -8.615850e-47 |
| Msa0880140 | Msa1111600 | 0.814135 | 1.797760e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111600 | MtrunA17_Chr4g0042641 | 85.714 | 28 | 4 | 0 | 106 | 133 | 17 | 44 | 7.39e-12 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTCATGGATGGAGGTT+GGG | 0.318019 | 7_3:+57290232 | None:intergenic |
| GCTGATGAATTTCAAGAAAT+AGG | 0.329504 | 7_3:-57289698 | Msa1111600:intron |
| TAAGCAATGTTGAGAACAAT+TGG | 0.330857 | 7_3:-57286663 | Msa1111600:intron |
| GTAGAAGAAAGTTGATTTCA+TGG | 0.335560 | 7_3:+57290220 | None:intergenic |
| ACACAAGCAGTGCAAATAAC+AGG | 0.339261 | 7_3:+57285608 | None:intergenic |
| GAGATAGCAACACACACTTC+TGG | 0.342376 | 7_3:-57289880 | Msa1111600:five_prime_UTR |
| ATTGAAATTGCAGTAGCTAT+TGG | 0.344477 | 7_3:-57289077 | Msa1111600:intron |
| TTGAAATTGCAGTAGCTATT+GGG | 0.345843 | 7_3:-57289076 | Msa1111600:intron |
| ACTCTCCAAGACCTCATCTT+TGG | 0.363030 | 7_3:+57285557 | None:intergenic |
| GATTTCATGGATGGAGGTTG+GGG | 0.369332 | 7_3:+57290233 | None:intergenic |
| GTTCCTCCTGTGAAGATTGT+TGG | 0.385035 | 7_3:-57286411 | Msa1111600:CDS |
| TTGATTTCATGGATGGAGGT+TGG | 0.430978 | 7_3:+57290231 | None:intergenic |
| GTGTGGTTGGAAAGCGGCAC+AGG | 0.438612 | 7_3:-57285589 | Msa1111600:CDS |
| CAAAATAATCTCTTCAATGT+TGG | 0.450531 | 7_3:-57285718 | Msa1111600:CDS |
| AGATAGCAACACACACTTCT+GGG | 0.466301 | 7_3:-57289879 | Msa1111600:five_prime_UTR |
| ATTTGCACTGCTTGTGTGGT+TGG | 0.468289 | 7_3:-57285602 | Msa1111600:CDS |
| AGGGACGATATGAGGATTAC+CGG | 0.476410 | 7_3:-57285645 | Msa1111600:CDS |
| AAGAAAGTTGATTTCATGGA+TGG | 0.488575 | 7_3:+57290224 | None:intergenic |
| TGTTATTTGCACTGCTTGTG+TGG | 0.507323 | 7_3:-57285606 | Msa1111600:CDS |
| AAAGTTGATTTCATGGATGG+AGG | 0.530346 | 7_3:+57290227 | None:intergenic |
| CTCATTCTTTCATTTAGCGA+CGG | 0.535557 | 7_3:+57289900 | None:intergenic |
| AACACACACTTCTGGGGAGG+AGG | 0.536072 | 7_3:-57289872 | Msa1111600:intron |
| TGTTGGTCAGCTTCAGCAGA+AGG | 0.540325 | 7_3:-57285701 | Msa1111600:CDS |
| AATTTCGACGTGGTGGTCAA+CGG | 0.543936 | 7_3:+57290066 | None:intergenic |
| AAGCAATGTTGAGAACAATT+GGG | 0.544350 | 7_3:-57286662 | Msa1111600:CDS |
| CACAAGCAGTGCAAATAACA+GGG | 0.546740 | 7_3:+57285609 | None:intergenic |
| TATGTGTAAGGGACGATATG+AGG | 0.546749 | 7_3:-57285653 | Msa1111600:CDS |
| TGATAGAAAATGATGAAAGA+AGG | 0.549869 | 7_3:+57290198 | None:intergenic |
| ATGAGGATTACCGGTGCTCA+AGG | 0.550612 | 7_3:-57285636 | Msa1111600:CDS |
| AATGTTGAGAACAATTGGGC+AGG | 0.557609 | 7_3:-57286658 | Msa1111600:intron |
| AATCAAGCAACATGGTTGCA+AGG | 0.564145 | 7_3:-57289466 | Msa1111600:intron |
| GGTTTACGTGAGAGAGTGTG+AGG | 0.596141 | 7_3:+57290254 | None:intergenic |
| ACTGCTCCAACAATCTTCAC+AGG | 0.603142 | 7_3:+57286405 | None:intergenic |
| ACAGGGGAATCCTTGAGCAC+CGG | 0.609949 | 7_3:+57285626 | None:intergenic |
| TGAAGAGATGAAGATGATGA+TGG | 0.610421 | 7_3:+57290147 | None:intergenic |
| ATTCTCTCTCCACCGCGCTG+AGG | 0.620415 | 7_3:-57290046 | Msa1111600:intron |
| GTTGGTCAGCTTCAGCAGAA+GGG | 0.620779 | 7_3:-57285700 | Msa1111600:CDS |
| CTGCTTGTGTGGTTGGAAAG+CGG | 0.632272 | 7_3:-57285595 | Msa1111600:CDS |
| GGGAAGCTATTCCAAAGATG+AGG | 0.641214 | 7_3:-57285568 | None:intergenic |
| TGTGGTTGGAAAGCGGCACA+GGG | 0.641999 | 7_3:-57285588 | Msa1111600:CDS |
| AGCAACACACACTTCTGGGG+AGG | 0.650153 | 7_3:-57289875 | Msa1111600:five_prime_UTR |
| GCTCCAACAATCTTCACAGG+AGG | 0.664971 | 7_3:+57286408 | None:intergenic |
| GATAGCAACACACACTTCTG+GGG | 0.670885 | 7_3:-57289878 | Msa1111600:five_prime_UTR |
| TTCGACGTGGTGGTCAACGG+TGG | 0.670969 | 7_3:+57290069 | None:intergenic |
| GAGAGAGAATTTCGACGTGG+TGG | 0.679739 | 7_3:+57290059 | None:intergenic |
| GTTATTTGCATAGAATCACA+AGG | 0.699403 | 7_3:-57286384 | Msa1111600:intron |
| ATATGAGAAATCAAGCAACA+TGG | 0.704791 | 7_3:-57289474 | Msa1111600:CDS |
| CTGATGATACCTCAGCGCGG+TGG | 0.713867 | 7_3:+57290037 | None:intergenic |
| ACAAGCAGTGCAAATAACAG+GGG | 0.745311 | 7_3:+57285610 | None:intergenic |
| GTGGAGAGAGAATTTCGACG+TGG | 0.789373 | 7_3:+57290056 | None:intergenic |
| GAACTGATGATACCTCAGCG+CGG | 0.855378 | 7_3:+57290034 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTTATAAACTTTTAT+CGG | + | chr7_3:57287108-57287127 | None:intergenic | 10.0% |
| !!! | ATAAAAGTTTATAACTTTTT+CGG | - | chr7_3:57287108-57287127 | Msa1111600:intron | 10.0% |
| !!! | TTAACTATAAGTTTTAATTT+TGG | - | chr7_3:57287770-57287789 | Msa1111600:intron | 10.0% |
| !!! | TAACTATAAGTTTTAATTTT+GGG | - | chr7_3:57287771-57287790 | Msa1111600:intron | 10.0% |
| !!! | TGTCATTTTTAAAATTAATT+TGG | + | chr7_3:57288128-57288147 | None:intergenic | 10.0% |
| !!! | CAAATAATATAATAATTTTG+TGG | + | chr7_3:57288844-57288863 | None:intergenic | 10.0% |
| !! | CACAAAATTATTATATTATT+TGG | - | chr7_3:57288842-57288861 | Msa1111600:intron | 10.0% |
| !! | TAAAATCATGAATTATATAT+TGG | - | chr7_3:57289160-57289179 | Msa1111600:intron | 10.0% |
| !! | AAAATCATGAATTATATATT+GGG | - | chr7_3:57289161-57289180 | Msa1111600:intron | 10.0% |
| !!! | CAAATTAAAATGAGTATTTT+TGG | + | chr7_3:57285858-57285877 | None:intergenic | 15.0% |
| !!! | CAAAAATACTCATTTTAATT+TGG | - | chr7_3:57285856-57285875 | Msa1111600:intron | 15.0% |
| !!! | GTTTTTGTAGTTTTAAATTT+TGG | - | chr7_3:57285924-57285943 | Msa1111600:intron | 15.0% |
| !! | ACTCAAAATTCAAAATATAA+TGG | + | chr7_3:57286040-57286059 | None:intergenic | 15.0% |
| !!! | TTTTGAGTAAACATTTTTTT+TGG | - | chr7_3:57286052-57286071 | Msa1111600:intron | 15.0% |
| !!! | TTCTGTTTTGTAAATTATAA+TGG | - | chr7_3:57286239-57286258 | Msa1111600:intron | 15.0% |
| !!! | TTGTAAATTATAATGGATAA+TGG | - | chr7_3:57286246-57286265 | Msa1111600:intron | 15.0% |
| !! | TTGATGTTTATAATTGAAAT+TGG | - | chr7_3:57287051-57287070 | Msa1111600:intron | 15.0% |
| !!! | TAAAAGTTTATAACTTTTTC+GGG | - | chr7_3:57287109-57287128 | Msa1111600:intron | 15.0% |
| !! | AAAAAACAGAATATGAAATT+GGG | + | chr7_3:57287143-57287162 | None:intergenic | 15.0% |
| !! | AAAAAAACAGAATATGAAAT+TGG | + | chr7_3:57287144-57287163 | None:intergenic | 15.0% |
| !!! | GTTTATTTGAGATTTTTTAA+TGG | - | chr7_3:57287226-57287245 | Msa1111600:intron | 15.0% |
| !! | ATTGTTTATATAAAGTAGTA+TGG | - | chr7_3:57287342-57287361 | Msa1111600:intron | 15.0% |
| !! | TACTAATCAAGTATAATATT+GGG | + | chr7_3:57287989-57288008 | None:intergenic | 15.0% |
| !! | ATACTAATCAAGTATAATAT+TGG | + | chr7_3:57287990-57288009 | None:intergenic | 15.0% |
| !! | AGGAATATTTAAATGATATA+TGG | - | chr7_3:57288296-57288315 | Msa1111600:intron | 15.0% |
| !!! | ATTTATTTTACACATTTAAC+AGG | + | chr7_3:57288911-57288930 | None:intergenic | 15.0% |
| !!! | TATACTTATATAGTGTTTTT+AGG | - | chr7_3:57289120-57289139 | Msa1111600:intron | 15.0% |
| !!! | CATTGATGATTATTTATTTT+AGG | - | chr7_3:57289247-57289266 | Msa1111600:intron | 15.0% |
| !!! | AAAACATAGTTTTAAATCAT+TGG | + | chr7_3:57289895-57289914 | None:intergenic | 15.0% |
| !! | TAAAACATTATTACTATTGT+AGG | + | chr7_3:57290098-57290117 | None:intergenic | 15.0% |
| !!! | TCATCATTTTCTATCAATTT+CGG | - | chr7_3:57285658-57285677 | Msa1111600:CDS | 20.0% |
| !!! | AATTTTCCAGAAAGATAAAT+GGG | + | chr7_3:57286084-57286103 | None:intergenic | 20.0% |
| !!! | TAATTTTCCAGAAAGATAAA+TGG | + | chr7_3:57286085-57286104 | None:intergenic | 20.0% |
| !!! | TTTTTCATATGTGAAAAGAT+TGG | - | chr7_3:57286482-57286501 | Msa1111600:intron | 20.0% |
| !!! | CAAGTTAACATTATAACTTT+TGG | - | chr7_3:57286665-57286684 | Msa1111600:intron | 20.0% |
| !! | AAAAAAAATCGCATCATAAA+TGG | - | chr7_3:57286937-57286956 | Msa1111600:intron | 20.0% |
| !!! | AAACTTTTATCGGTAATAAA+AGG | + | chr7_3:57287098-57287117 | None:intergenic | 20.0% |
| !!! | ACGTAAGTAATTAACATTTT+GGG | - | chr7_3:57287448-57287467 | Msa1111600:intron | 20.0% |
| !!! | TTTGTTGAAGTACTTTTATT+GGG | - | chr7_3:57287716-57287735 | Msa1111600:intron | 20.0% |
| !! | ACTAATCAAGTATAATATTG+GGG | + | chr7_3:57287988-57288007 | None:intergenic | 20.0% |
| !!! | GCAAGATTATATTACTTTTT+GGG | + | chr7_3:57288106-57288125 | None:intergenic | 20.0% |
| !! | ATATCATAAACACAACTATT+TGG | - | chr7_3:57288214-57288233 | Msa1111600:intron | 20.0% |
| !!! | TTTTATGCTATGACAAAAAT+AGG | - | chr7_3:57288276-57288295 | Msa1111600:intron | 20.0% |
| !!! | TGTTTTATACATTTACCAAT+TGG | + | chr7_3:57288819-57288838 | None:intergenic | 20.0% |
| !! | TTATTTGATAAAGAGATATC+AGG | + | chr7_3:57288972-57288991 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTCATTAGAATTT+AGG | - | chr7_3:57288991-57289010 | Msa1111600:intron | 20.0% |
| !! | AAAAAAAACCTTATTAGCAA+AGG | + | chr7_3:57289642-57289661 | None:intergenic | 20.0% |
| !!! | TTTTTTTATGTTTGTGTTGA+CGG | - | chr7_3:57289655-57289674 | Msa1111600:intron | 20.0% |
| !!! | ATTTGATGATATAAAACTGT+AGG | - | chr7_3:57289688-57289707 | Msa1111600:intron | 20.0% |
| !! | ATCTTGCTTTAATAATGATT+TGG | - | chr7_3:57289999-57290018 | Msa1111600:intron | 20.0% |
| !! | ATTCAAAAAGATATGTGTAA+GGG | - | chr7_3:57290185-57290204 | Msa1111600:five_prime_UTR | 20.0% |
| ! | TGATAGAAAATGATGAAAGA+AGG | + | chr7_3:57285654-57285673 | None:intergenic | 25.0% |
| ! | TAAAAATCCGAAGATGAAAA+TGG | + | chr7_3:57286014-57286033 | None:intergenic | 25.0% |
| ! | GAAATAGGTATGACAATTAA+AGG | - | chr7_3:57286166-57286185 | Msa1111600:intron | 25.0% |
| !! | TATGTTAGCTTCAAATATGA+TGG | - | chr7_3:57286282-57286301 | Msa1111600:intron | 25.0% |
| !! | ATGTTAGCTTCAAATATGAT+GGG | - | chr7_3:57286283-57286302 | Msa1111600:intron | 25.0% |
| !!! | CATGTTATTTTCACATAGTT+TGG | - | chr7_3:57286596-57286615 | Msa1111600:intron | 25.0% |
| !!! | CTGTTTTTAAGAAATGCTTT+TGG | - | chr7_3:57286626-57286645 | Msa1111600:intron | 25.0% |
| ! | ATAGAAAAAGCAACAAGAAA+AGG | - | chr7_3:57286824-57286843 | Msa1111600:intron | 25.0% |
| ! | TTGAATGAGTGATTGAAATT+AGG | - | chr7_3:57287274-57287293 | Msa1111600:intron | 25.0% |
| ! | TGAATGAGTGATTGAAATTA+GGG | - | chr7_3:57287275-57287294 | Msa1111600:intron | 25.0% |
| ! | ATTGAAATTAGGGTTCAAAA+AGG | - | chr7_3:57287285-57287304 | Msa1111600:intron | 25.0% |
| ! | TTGAAATTAGGGTTCAAAAA+GGG | - | chr7_3:57287286-57287305 | Msa1111600:intron | 25.0% |
| !! | TTGTTCTTTTGTTCAAATTC+AGG | - | chr7_3:57287381-57287400 | Msa1111600:intron | 25.0% |
| !! | GACGTAAGTAATTAACATTT+TGG | - | chr7_3:57287447-57287466 | Msa1111600:intron | 25.0% |
| !! | CGTAAGTAATTAACATTTTG+GGG | - | chr7_3:57287449-57287468 | Msa1111600:intron | 25.0% |
| !! | GTAAGTAATTAACATTTTGG+GGG | - | chr7_3:57287450-57287469 | Msa1111600:intron | 25.0% |
| !! | TAAGTAATTAACATTTTGGG+GGG | - | chr7_3:57287451-57287470 | Msa1111600:intron | 25.0% |
| ! | TGATATCTTTGTTCAAACTA+TGG | - | chr7_3:57287572-57287591 | Msa1111600:intron | 25.0% |
| !!! | CACTTTTTATGTTTATCACT+TGG | - | chr7_3:57287647-57287666 | Msa1111600:intron | 25.0% |
| ! | TATTCCAACAATAACACAAA+GGG | + | chr7_3:57287682-57287701 | None:intergenic | 25.0% |
| !!! | GTTTGTTGAAGTACTTTTAT+TGG | - | chr7_3:57287715-57287734 | Msa1111600:intron | 25.0% |
| ! | TTAATTTACCTTATTGTGCA+AGG | + | chr7_3:57287846-57287865 | None:intergenic | 25.0% |
| !!! | GGCAAGATTATATTACTTTT+TGG | + | chr7_3:57288107-57288126 | None:intergenic | 25.0% |
| ! | ATGACACAATTAACATAACA+GGG | + | chr7_3:57288196-57288215 | None:intergenic | 25.0% |
| ! | TATGACACAATTAACATAAC+AGG | + | chr7_3:57288197-57288216 | None:intergenic | 25.0% |
| ! | AACAACTTTGAATCTTGAAA+AGG | + | chr7_3:57288742-57288761 | None:intergenic | 25.0% |
| ! | TTATACATTTACCAATTGGA+AGG | + | chr7_3:57288815-57288834 | None:intergenic | 25.0% |
| !! | AAACTAAAGTGACAATTTTG+TGG | + | chr7_3:57288937-57288956 | None:intergenic | 25.0% |
| ! | AGTATGAACATATATTCCAA+AGG | + | chr7_3:57289020-57289039 | None:intergenic | 25.0% |
| ! | TACTCTATATGTTCTTTGTA+TGG | - | chr7_3:57289036-57289055 | Msa1111600:CDS | 25.0% |
| ! | TATATGTTCTTTGTATGGAT+TGG | - | chr7_3:57289041-57289060 | Msa1111600:CDS | 25.0% |
| ! | AAATAATCATCAATGTCATG+TGG | + | chr7_3:57289242-57289261 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTAATTTCATGAC+AGG | - | chr7_3:57289372-57289391 | Msa1111600:intron | 25.0% |
| !! | TTTTGCTTTCTTGATAGATT+TGG | - | chr7_3:57289416-57289435 | Msa1111600:intron | 25.0% |
| !! | TTTTATAGTACTCTTGAATG+TGG | - | chr7_3:57289829-57289848 | Msa1111600:intron | 25.0% |
| !!! | ATTGAAGAGATTATTTTGCA+AGG | + | chr7_3:57290129-57290148 | None:intergenic | 25.0% |
| ! | CAAAATAATCTCTTCAATGT+TGG | - | chr7_3:57290131-57290150 | Msa1111600:five_prime_UTR | 25.0% |
| ! | GATTCAAAAAGATATGTGTA+AGG | - | chr7_3:57290184-57290203 | Msa1111600:five_prime_UTR | 25.0% |
| ! | AAGAAAGTTGATTTCATGGA+TGG | + | chr7_3:57285628-57285647 | None:intergenic | 30.0% |
| ! | GTAGAAGAAAGTTGATTTCA+TGG | + | chr7_3:57285632-57285651 | None:intergenic | 30.0% |
| !!! | GATGATGGCTTTATTTTAGT+GGG | + | chr7_3:57285690-57285709 | None:intergenic | 30.0% |
| !!! | TGATGATGGCTTTATTTTAG+TGG | + | chr7_3:57285691-57285710 | None:intergenic | 30.0% |
| ! | GATTCATCCATTTTCATCTT+CGG | - | chr7_3:57286004-57286023 | Msa1111600:intron | 30.0% |
| TCAAATCCCATTTATCTTTC+TGG | - | chr7_3:57286075-57286094 | Msa1111600:intron | 30.0% | |
| TGCACATGAAAATAGAAACA+TGG | + | chr7_3:57286118-57286137 | None:intergenic | 30.0% | |
| TTTCATGTGCAATCAGAAAT+TGG | - | chr7_3:57286127-57286146 | Msa1111600:intron | 30.0% | |
| GCTGATGAATTTCAAGAAAT+AGG | - | chr7_3:57286151-57286170 | Msa1111600:intron | 30.0% | |
| ATATGAGAAATCAAGCAACA+TGG | - | chr7_3:57286375-57286394 | Msa1111600:intron | 30.0% | |
| TGTTGTCATTGTCAATATGT+TGG | - | chr7_3:57286704-57286723 | Msa1111600:intron | 30.0% | |
| ATTGAAATTGCAGTAGCTAT+TGG | - | chr7_3:57286772-57286791 | Msa1111600:intron | 30.0% | |
| TTGAAATTGCAGTAGCTATT+GGG | - | chr7_3:57286773-57286792 | Msa1111600:intron | 30.0% | |
| !!! | TCTTGTTGCTTTTTCTATGA+AGG | + | chr7_3:57286822-57286841 | None:intergenic | 30.0% |
| TAACTCATAATCAAGTTCTG+AGG | - | chr7_3:57286986-57287005 | Msa1111600:intron | 30.0% | |
| GCTTGACAGATTTACATATT+AGG | - | chr7_3:57287176-57287195 | Msa1111600:intron | 30.0% | |
| TTCAAAAAGGGCTATGATAA+AGG | - | chr7_3:57287298-57287317 | Msa1111600:intron | 30.0% | |
| ! | TTAACCCTTTGTGTTATTGT+TGG | - | chr7_3:57287675-57287694 | Msa1111600:intron | 30.0% |
| CTATTCCAACAATAACACAA+AGG | + | chr7_3:57287683-57287702 | None:intergenic | 30.0% | |
| ATGATATATGGCTACATGAT+TGG | - | chr7_3:57288308-57288327 | Msa1111600:intron | 30.0% | |
| ACTACAAGTCAAAATAACAC+AGG | - | chr7_3:57288572-57288591 | Msa1111600:intron | 30.0% | |
| TCTTGGCTGTATTTGTAAAT+TGG | - | chr7_3:57288683-57288702 | Msa1111600:intron | 30.0% | |
| TTGAATCTTGAAAAGGAAAG+CGG | + | chr7_3:57288735-57288754 | None:intergenic | 30.0% | |
| TATTGTTTCAACCTTCCAAT+TGG | - | chr7_3:57288801-57288820 | Msa1111600:intron | 30.0% | |
| ! | ATTAGAATTTAGGACACCTT+TGG | - | chr7_3:57289001-57289020 | Msa1111600:intron | 30.0% |
| TAAGCAATGTTGAGAACAAT+TGG | - | chr7_3:57289186-57289205 | Msa1111600:intron | 30.0% | |
| AAGCAATGTTGAGAACAATT+GGG | - | chr7_3:57289187-57289206 | Msa1111600:intron | 30.0% | |
| GTTATTTGCATAGAATCACA+AGG | - | chr7_3:57289465-57289484 | Msa1111600:intron | 30.0% | |
| !!! | GCCTTTTGGTTCTATTTTTA+TGG | - | chr7_3:57289512-57289531 | Msa1111600:intron | 30.0% |
| GCCATAAAAATAGAACCAAA+AGG | + | chr7_3:57289516-57289535 | None:intergenic | 30.0% | |
| ! | GACTAAAGTGCTCAATATAA+TGG | - | chr7_3:57289600-57289619 | Msa1111600:intron | 30.0% |
| ATTGTAGGATTAAGCATCAA+AGG | + | chr7_3:57290083-57290102 | None:intergenic | 30.0% | |
| ! | AAAGTTGATTTCATGGATGG+AGG | + | chr7_3:57285625-57285644 | None:intergenic | 35.0% |
| TGAAGAGATGAAGATGATGA+TGG | + | chr7_3:57285705-57285724 | None:intergenic | 35.0% | |
| !!! | TGAATGAGTTGCTTTTGTAG+AGG | + | chr7_3:57285729-57285748 | None:intergenic | 35.0% |
| TTTGGATGAAAGAGAGAGAA+AGG | + | chr7_3:57285840-57285859 | None:intergenic | 35.0% | |
| CTCATTCTTTCATTTAGCGA+CGG | + | chr7_3:57285952-57285971 | None:intergenic | 35.0% | |
| ! | AAATGCTTTTGGATGTGAGT+TGG | - | chr7_3:57286637-57286656 | Msa1111600:intron | 35.0% |
| !! | ATAATCAAGTTCTGAGGTCA+TGG | - | chr7_3:57286992-57287011 | Msa1111600:intron | 35.0% |
| !!! | TACTTTTATTGGGTGTCACT+TGG | - | chr7_3:57287726-57287745 | Msa1111600:intron | 35.0% |
| !!! | TTGGTTTGTTTTGGGTGTTT+TGG | - | chr7_3:57287745-57287764 | Msa1111600:intron | 35.0% |
| AGGAATTAGTGAATGATCTC+AGG | - | chr7_3:57287813-57287832 | Msa1111600:intron | 35.0% | |
| GTCATTATCCTTGCACAATA+AGG | - | chr7_3:57287835-57287854 | Msa1111600:intron | 35.0% | |
| TTCTTAGATGTATAGTGCAG+TGG | - | chr7_3:57287883-57287902 | Msa1111600:intron | 35.0% | |
| TGTATAGTGCAGTGGAAATT+TGG | - | chr7_3:57287891-57287910 | Msa1111600:intron | 35.0% | |
| !!! | AAAGTAGCTTGCTTTTCTCT+TGG | - | chr7_3:57287932-57287951 | Msa1111600:intron | 35.0% |
| ACACAATTAACATAACAGGG+AGG | + | chr7_3:57288193-57288212 | None:intergenic | 35.0% | |
| !!! | ACTTTTTGAAACCATGTCCA+AGG | - | chr7_3:57288532-57288551 | Msa1111600:intron | 35.0% |
| !!! | CTTTTTGAAACCATGTCCAA+GGG | - | chr7_3:57288533-57288552 | Msa1111600:intron | 35.0% |
| ! | ACAAAAGTCATTGAAAGTGC+TGG | + | chr7_3:57288615-57288634 | None:intergenic | 35.0% |
| TCTGCAGAAGAAATCAGAAT+AGG | - | chr7_3:57288644-57288663 | Msa1111600:intron | 35.0% | |
| CTGCAGAAGAAATCAGAATA+GGG | - | chr7_3:57288645-57288664 | Msa1111600:intron | 35.0% | |
| TGAATCTTGAAAAGGAAAGC+GGG | + | chr7_3:57288734-57288753 | None:intergenic | 35.0% | |
| AGATTCAAAGTTGTTCCGAA+AGG | - | chr7_3:57288747-57288766 | Msa1111600:intron | 35.0% | |
| ATGGATAGTTAGATGCCTTT+CGG | + | chr7_3:57288765-57288784 | None:intergenic | 35.0% | |
| ! | ATAGTGTTGTTGGAAAACGA+TGG | + | chr7_3:57288784-57288803 | None:intergenic | 35.0% |
| GGTTGAAACAATAGTGTTGT+TGG | + | chr7_3:57288794-57288813 | None:intergenic | 35.0% | |
| CTTCATTCAACAGAATTGCA+AGG | - | chr7_3:57289347-57289366 | Msa1111600:intron | 35.0% | |
| !!! | TTGGTTCTATTTTTATGGCG+AGG | - | chr7_3:57289517-57289536 | Msa1111600:intron | 35.0% |
| TAGCAATTAGCAAAAGCAAG+TGG | + | chr7_3:57289556-57289575 | None:intergenic | 35.0% | |
| ! | TGCTTTTGCTAATTGCTATC+AGG | - | chr7_3:57289558-57289577 | Msa1111600:intron | 35.0% |
| ! | TCAGGTTCTGATCTTAAGTT+AGG | - | chr7_3:57289576-57289595 | Msa1111600:intron | 35.0% |
| ! | CAGGTTCTGATCTTAAGTTA+GGG | - | chr7_3:57289577-57289596 | Msa1111600:intron | 35.0% |
| ! | AGGTTCTGATCTTAAGTTAG+GGG | - | chr7_3:57289578-57289597 | Msa1111600:intron | 35.0% |
| GACATGAGAAAACCAAACAT+TGG | + | chr7_3:57289720-57289739 | None:intergenic | 35.0% | |
| AAATGACCAATGAAGTTGTG+TGG | - | chr7_3:57289801-57289820 | Msa1111600:intron | 35.0% | |
| TGATTTCATGGATGGAGGTT+GGG | + | chr7_3:57285620-57285639 | None:intergenic | 40.0% | |
| TTGATTTCATGGATGGAGGT+TGG | + | chr7_3:57285621-57285640 | None:intergenic | 40.0% | |
| !!! | GATGGCTTTATTTTAGTGGG+AGG | + | chr7_3:57285687-57285706 | None:intergenic | 40.0% |
| AGATAGCAACACACACTTCT+GGG | - | chr7_3:57285970-57285989 | Msa1111600:intron | 40.0% | |
| AATCAAGCAACATGGTTGCA+AGG | - | chr7_3:57286383-57286402 | Msa1111600:intron | 40.0% | |
| !!! | GGTGTCACTTGGTTTGTTTT+GGG | - | chr7_3:57287737-57287756 | Msa1111600:intron | 40.0% |
| TTGGGCTAAACATGCAATCA+TGG | - | chr7_3:57287789-57287808 | Msa1111600:intron | 40.0% | |
| ATAACAGGGAGGAAAATAGC+GGG | + | chr7_3:57288182-57288201 | None:intergenic | 40.0% | |
| CATAACAGGGAGGAAAATAG+CGG | + | chr7_3:57288183-57288202 | None:intergenic | 40.0% | |
| TGCAATCAGATGACATCACT+TGG | - | chr7_3:57288502-57288521 | Msa1111600:intron | 40.0% | |
| CTGATTTCTTCTGCAGAAAG+AGG | + | chr7_3:57288641-57288660 | None:intergenic | 40.0% | |
| GGACATTACTCACTACATCT+TGG | - | chr7_3:57288666-57288685 | Msa1111600:intron | 40.0% | |
| AATGTTGAGAACAATTGGGC+AGG | - | chr7_3:57289191-57289210 | Msa1111600:intron | 40.0% | |
| TTCACTCGCCTTTGCTAATA+AGG | - | chr7_3:57289631-57289650 | Msa1111600:intron | 40.0% | |
| ! | TGTTTGTGTTGACGGTTTAG+CGG | - | chr7_3:57289663-57289682 | Msa1111600:intron | 40.0% |
| TGTAGGTCAGTACCAATGTT+TGG | - | chr7_3:57289705-57289724 | Msa1111600:five_prime_UTR | 40.0% | |
| ATTCGAAGAGACACACACAT+TGG | + | chr7_3:57289759-57289778 | None:intergenic | 40.0% | |
| ACTCAACCACACAACTTCAT+TGG | + | chr7_3:57289810-57289829 | None:intergenic | 40.0% | |
| TATGTGTAAGGGACGATATG+AGG | - | chr7_3:57290196-57290215 | Msa1111600:five_prime_UTR | 40.0% | |
| ACAAGCAGTGCAAATAACAG+GGG | + | chr7_3:57290242-57290261 | None:intergenic | 40.0% | |
| CACAAGCAGTGCAAATAACA+GGG | + | chr7_3:57290243-57290262 | None:intergenic | 40.0% | |
| ACACAAGCAGTGCAAATAAC+AGG | + | chr7_3:57290244-57290263 | None:intergenic | 40.0% | |
| ! | TGTTATTTGCACTGCTTGTG+TGG | - | chr7_3:57290243-57290262 | Msa1111600:five_prime_UTR | 40.0% |
| GATTTCATGGATGGAGGTTG+GGG | + | chr7_3:57285619-57285638 | None:intergenic | 45.0% | |
| !!! | GGCTTTATTTTAGTGGGAGG+AGG | + | chr7_3:57285684-57285703 | None:intergenic | 45.0% |
| AATTTCGACGTGGTGGTCAA+CGG | + | chr7_3:57285786-57285805 | None:intergenic | 45.0% | |
| GAGATAGCAACACACACTTC+TGG | - | chr7_3:57285969-57285988 | Msa1111600:intron | 45.0% | |
| GATAGCAACACACACTTCTG+GGG | - | chr7_3:57285971-57285990 | Msa1111600:intron | 45.0% | |
| !! | CATTTTGGGGGGTCAAATTC+AGG | - | chr7_3:57287462-57287481 | Msa1111600:intron | 45.0% |
| !!! | GGGTGTCACTTGGTTTGTTT+TGG | - | chr7_3:57287736-57287755 | Msa1111600:intron | 45.0% |
| GCTAAACATGCAATCATGGC+AGG | - | chr7_3:57287793-57287812 | Msa1111600:intron | 45.0% | |
| !! | GTTCTATCCATTGACTCCCT+TGG | + | chr7_3:57288552-57288571 | None:intergenic | 45.0% |
| GTTCCTCCTGTGAAGATTGT+TGG | - | chr7_3:57289438-57289457 | Msa1111600:intron | 45.0% | |
| ACTGCTCCAACAATCTTCAC+AGG | + | chr7_3:57289447-57289466 | None:intergenic | 45.0% | |
| ! | AGCGTTGTGTTTGTGCCTTT+TGG | - | chr7_3:57289498-57289517 | Msa1111600:intron | 45.0% |
| AGGGACGATATGAGGATTAC+CGG | - | chr7_3:57290204-57290223 | Msa1111600:five_prime_UTR | 45.0% | |
| ATTTGCACTGCTTGTGTGGT+TGG | - | chr7_3:57290247-57290266 | Msa1111600:five_prime_UTR | 45.0% | |
| !! | ATATAAAAGAATAAAAAAAT+AGG | + | chr7_3:57290029-57290048 | None:intergenic | 5.0% |
| TGAGGAAGAGAGAGAGAGAG+TGG | + | chr7_3:57285580-57285599 | None:intergenic | 50.0% | |
| ! | GGTTTACGTGAGAGAGTGTG+AGG | + | chr7_3:57285598-57285617 | None:intergenic | 50.0% |
| GAGAGAGAATTTCGACGTGG+TGG | + | chr7_3:57285793-57285812 | None:intergenic | 50.0% | |
| GTGGAGAGAGAATTTCGACG+TGG | + | chr7_3:57285796-57285815 | None:intergenic | 50.0% | |
| GAACTGATGATACCTCAGCG+CGG | + | chr7_3:57285818-57285837 | None:intergenic | 50.0% | |
| ACCATGTCCAAGGGAGTCAA+TGG | - | chr7_3:57288542-57288561 | Msa1111600:intron | 50.0% | |
| !! | TCCATTGACTCCCTTGGACA+TGG | + | chr7_3:57288546-57288565 | None:intergenic | 50.0% |
| GCTCCAACAATCTTCACAGG+AGG | + | chr7_3:57289444-57289463 | None:intergenic | 50.0% | |
| TGTTGGTCAGCTTCAGCAGA+AGG | - | chr7_3:57290148-57290167 | Msa1111600:five_prime_UTR | 50.0% | |
| GTTGGTCAGCTTCAGCAGAA+GGG | - | chr7_3:57290149-57290168 | Msa1111600:five_prime_UTR | 50.0% | |
| ATGAGGATTACCGGTGCTCA+AGG | - | chr7_3:57290213-57290232 | Msa1111600:five_prime_UTR | 50.0% | |
| CTGCTTGTGTGGTTGGAAAG+CGG | - | chr7_3:57290254-57290273 | Msa1111600:five_prime_UTR | 50.0% | |
| ! | AGCAACACACACTTCTGGGG+AGG | - | chr7_3:57285974-57285993 | Msa1111600:intron | 55.0% |
| ! | AACACACACTTCTGGGGAGG+AGG | - | chr7_3:57285977-57285996 | Msa1111600:intron | 55.0% |
| ACAGGGGAATCCTTGAGCAC+CGG | + | chr7_3:57290226-57290245 | None:intergenic | 55.0% | |
| TGTGGTTGGAAAGCGGCACA+GGG | - | chr7_3:57290261-57290280 | Msa1111600:five_prime_UTR | 55.0% | |
| TTCGACGTGGTGGTCAACGG+TGG | + | chr7_3:57285783-57285802 | None:intergenic | 60.0% | |
| ATTCTCTCTCCACCGCGCTG+AGG | - | chr7_3:57285803-57285822 | Msa1111600:intron | 60.0% | |
| CTGATGATACCTCAGCGCGG+TGG | + | chr7_3:57285815-57285834 | None:intergenic | 60.0% | |
| GTGTGGTTGGAAAGCGGCAC+AGG | - | chr7_3:57290260-57290279 | Msa1111600:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 57285570 | 57290301 | 57285570 | ID=Msa1111600;Name=Msa1111600 |
| chr7_3 | mRNA | 57285570 | 57290301 | 57285570 | ID=Msa1111600-mRNA-1;Parent=Msa1111600;Name=Msa1111600-mRNA-1;_AED=0.20;_eAED=0.32;_QI=366|0.57|0.62|0.87|0.14|0.25|8|0|133 |
| chr7_3 | exon | 57285570 | 57285766 | 57285570 | ID=Msa1111600-mRNA-1:exon:12360;Parent=Msa1111600-mRNA-1 |
| chr7_3 | exon | 57286385 | 57286477 | 57286385 | ID=Msa1111600-mRNA-1:exon:12359;Parent=Msa1111600-mRNA-1 |
| chr7_3 | exon | 57286659 | 57286681 | 57286659 | ID=Msa1111600-mRNA-1:exon:12358;Parent=Msa1111600-mRNA-1 |
| chr7_3 | exon | 57289026 | 57289086 | 57289026 | ID=Msa1111600-mRNA-1:exon:12357;Parent=Msa1111600-mRNA-1 |
| chr7_3 | exon | 57289467 | 57289510 | 57289467 | ID=Msa1111600-mRNA-1:exon:12356;Parent=Msa1111600-mRNA-1 |
| chr7_3 | exon | 57289699 | 57289728 | 57289699 | ID=Msa1111600-mRNA-1:exon:12355;Parent=Msa1111600-mRNA-1 |
| chr7_3 | exon | 57289873 | 57289937 | 57289873 | ID=Msa1111600-mRNA-1:exon:12354;Parent=Msa1111600-mRNA-1 |
| chr7_3 | exon | 57290047 | 57290301 | 57290047 | ID=Msa1111600-mRNA-1:exon:12353;Parent=Msa1111600-mRNA-1 |
| chr7_3 | five_prime_UTR | 57290047 | 57290301 | 57290047 | ID=Msa1111600-mRNA-1:five_prime_utr;Parent=Msa1111600-mRNA-1 |
| chr7_3 | five_prime_UTR | 57289873 | 57289937 | 57289873 | ID=Msa1111600-mRNA-1:five_prime_utr;Parent=Msa1111600-mRNA-1 |
| chr7_3 | five_prime_UTR | 57289699 | 57289728 | 57289699 | ID=Msa1111600-mRNA-1:five_prime_utr;Parent=Msa1111600-mRNA-1 |
| chr7_3 | five_prime_UTR | 57289495 | 57289510 | 57289495 | ID=Msa1111600-mRNA-1:five_prime_utr;Parent=Msa1111600-mRNA-1 |
| chr7_3 | CDS | 57289467 | 57289494 | 57289467 | ID=Msa1111600-mRNA-1:cds;Parent=Msa1111600-mRNA-1 |
| chr7_3 | CDS | 57289026 | 57289086 | 57289026 | ID=Msa1111600-mRNA-1:cds;Parent=Msa1111600-mRNA-1 |
| chr7_3 | CDS | 57286659 | 57286681 | 57286659 | ID=Msa1111600-mRNA-1:cds;Parent=Msa1111600-mRNA-1 |
| chr7_3 | CDS | 57286385 | 57286477 | 57286385 | ID=Msa1111600-mRNA-1:cds;Parent=Msa1111600-mRNA-1 |
| chr7_3 | CDS | 57285570 | 57285766 | 57285570 | ID=Msa1111600-mRNA-1:cds;Parent=Msa1111600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
