Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107020 | XP_039688434.1 | 73.510 | 453 | 88 | 5 | 45 | 482 | 3 | 438 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107020 | sp|Q8L3W1|VRN1_ARATH | 23.653 | 334 | 208 | 8 | 51 | 340 | 6 | 336 | 1.91e-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107020 | A0A396JPN4 | 73.510 | 453 | 88 | 5 | 45 | 482 | 3 | 438 | 0.0 | 660 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0107020 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0107020 | 0.842133 | 3.114369e-58 | -8.615850e-47 |
| Msa0028640 | Msa0107020 | 0.803992 | 2.675453e-49 | -8.615850e-47 |
| Msa0029270 | Msa0107020 | 0.802159 | 6.404152e-49 | -8.615850e-47 |
| Msa0032430 | Msa0107020 | 0.814414 | 1.559177e-51 | -8.615850e-47 |
| Msa0062600 | Msa0107020 | 0.905320 | 4.863795e-80 | -8.615850e-47 |
| Msa0107020 | Msa0107120 | 0.945616 | 2.188841e-104 | -8.615850e-47 |
| Msa0107020 | Msa0107180 | 0.946294 | 6.074803e-105 | -8.615850e-47 |
| Msa0107020 | Msa0110970 | 0.804577 | 2.020590e-49 | -8.615850e-47 |
| Msa0107020 | Msa0139060 | 0.805044 | 1.614551e-49 | -8.615850e-47 |
| Msa0107020 | Msa0157290 | 0.842087 | 3.202105e-58 | -8.615850e-47 |
| Msa0107020 | Msa0165210 | 0.815715 | 8.020625e-52 | -8.615850e-47 |
| Msa0107020 | Msa0165220 | 0.814896 | 1.219575e-51 | -8.615850e-47 |
| Msa0107020 | Msa0172070 | 0.809475 | 1.858285e-50 | -8.615850e-47 |
| Msa0107020 | Msa0200260 | 0.816570 | 5.166205e-52 | -8.615850e-47 |
| Msa0107020 | Msa0213520 | 0.808514 | 2.983169e-50 | -8.615850e-47 |
| Msa0107020 | Msa0215680 | 0.928143 | 4.380391e-92 | -8.615850e-47 |
| Msa0107020 | Msa0216910 | 0.800571 | 1.354232e-48 | -8.615850e-47 |
| Msa0107020 | Msa0222700 | 0.806443 | 8.205752e-50 | -8.615850e-47 |
| Msa0107020 | Msa0222890 | 0.804301 | 2.306708e-49 | -8.615850e-47 |
| Msa0107020 | Msa0243100 | 0.809816 | 1.569485e-50 | -8.615850e-47 |
| Msa0107020 | Msa0302000 | 0.803379 | 3.584652e-49 | -8.615850e-47 |
| Msa0107020 | Msa0357340 | 0.803848 | 2.866157e-49 | -8.615850e-47 |
| Msa0107020 | Msa0380740 | 0.807158 | 5.794518e-50 | -8.615850e-47 |
| Msa0107020 | Msa0398710 | 0.808478 | 3.037311e-50 | -8.615850e-47 |
| Msa0107020 | Msa0410650 | 0.801311 | 9.557685e-49 | -8.615850e-47 |
| Msa0107020 | Msa0487800 | 0.802172 | 6.362727e-49 | -8.615850e-47 |
| Msa0107020 | Msa0493250 | 0.801318 | 9.528078e-49 | -8.615850e-47 |
| Msa0107020 | Msa0529890 | 0.809130 | 2.203084e-50 | -8.615850e-47 |
| Msa0107020 | Msa0547320 | 0.800378 | 1.482176e-48 | -8.615850e-47 |
| Msa0107020 | Msa0585560 | 0.808931 | 2.429882e-50 | -8.615850e-47 |
| Msa0107020 | Msa0597330 | 0.813427 | 2.573875e-51 | -8.615850e-47 |
| Msa0107020 | Msa0601750 | 0.805882 | 1.077229e-49 | -8.615850e-47 |
| Msa0107020 | Msa0602390 | 0.807449 | 5.027420e-50 | -8.615850e-47 |
| Msa0107020 | Msa0610430 | 0.806233 | 9.084177e-50 | -8.615850e-47 |
| Msa0107020 | Msa0625720 | 0.809044 | 2.298027e-50 | -8.615850e-47 |
| Msa0107020 | Msa0657970 | 0.818576 | 1.824137e-52 | -8.615850e-47 |
| Msa0107020 | Msa0663390 | 0.808482 | 3.030410e-50 | -8.615850e-47 |
| Msa0107020 | Msa0663810 | 0.801730 | 7.843431e-49 | -8.615850e-47 |
| Msa0107020 | Msa0681250 | 0.801404 | 9.151342e-49 | -8.615850e-47 |
| Msa0107020 | Msa0681270 | 0.820364 | 7.132683e-53 | -8.615850e-47 |
| Msa0107020 | Msa0691380 | 0.808193 | 3.493400e-50 | -8.615850e-47 |
| Msa0107020 | Msa0692950 | 0.808865 | 2.510348e-50 | -8.615850e-47 |
| Msa0107020 | Msa0693010 | -0.803094 | 4.107931e-49 | -8.615850e-47 |
| Msa0107020 | Msa0729580 | 0.804706 | 1.899387e-49 | -8.615850e-47 |
| Msa0107020 | Msa0743720 | 0.833858 | 4.188373e-56 | -8.615850e-47 |
| Msa0107020 | Msa0743950 | 0.802519 | 5.398417e-49 | -8.615850e-47 |
| Msa0107020 | Msa0769920 | 0.820915 | 5.328542e-53 | -8.615850e-47 |
| Msa0107020 | Msa0777850 | 0.804698 | 1.906587e-49 | -8.615850e-47 |
| Msa0107020 | Msa0796700 | 0.800375 | 1.484333e-48 | -8.615850e-47 |
| Msa0107020 | Msa0822870 | 0.817706 | 2.869645e-52 | -8.615850e-47 |
| Msa0107020 | Msa0824680 | 0.801136 | 1.037963e-48 | -8.615850e-47 |
| Msa0107020 | Msa0880140 | 0.838148 | 3.415674e-57 | -8.615850e-47 |
| Msa0107020 | Msa0898640 | 0.810891 | 9.199527e-51 | -8.615850e-47 |
| Msa0107020 | Msa0906200 | 0.808134 | 3.595131e-50 | -8.615850e-47 |
| Msa0107020 | Msa0947660 | 0.816657 | 4.938653e-52 | -8.615850e-47 |
| Msa0107020 | Msa0959360 | 0.810106 | 1.359495e-50 | -8.615850e-47 |
| Msa0107020 | Msa0968680 | 0.800715 | 1.265214e-48 | -8.615850e-47 |
| Msa0107020 | Msa0993290 | 0.803331 | 3.668853e-49 | -8.615850e-47 |
| Msa0107020 | Msa0993600 | 0.809209 | 2.118282e-50 | -8.615850e-47 |
| Msa0107020 | Msa1005880 | 0.800752 | 1.243390e-48 | -8.615850e-47 |
| Msa0107020 | Msa1014540 | 0.823749 | 1.171499e-53 | -8.615850e-47 |
| Msa0107020 | Msa1075540 | 0.813404 | 2.604211e-51 | -8.615850e-47 |
| Msa0107020 | Msa1082500 | 0.813527 | 2.446744e-51 | -8.615850e-47 |
| Msa0107020 | Msa1085200 | 0.804709 | 1.896837e-49 | -8.615850e-47 |
| Msa0107020 | Msa1190400 | 0.808409 | 3.141592e-50 | -8.615850e-47 |
| Msa0107020 | Msa1199220 | 0.814033 | 1.892679e-51 | -8.615850e-47 |
| Msa0107020 | Msa1204090 | 0.800913 | 1.153213e-48 | -8.615850e-47 |
| Msa0107020 | Msa1209460 | 0.811307 | 7.473605e-51 | -8.615850e-47 |
| Msa0107020 | Msa1242670 | 0.801236 | 9.902199e-49 | -8.615850e-47 |
| Msa0107020 | Msa1244250 | 0.810827 | 9.495621e-51 | -8.615850e-47 |
| Msa0107020 | Msa1252140 | 0.814437 | 1.541314e-51 | -8.615850e-47 |
| Msa0107020 | Msa1253020 | 0.812038 | 5.183004e-51 | -8.615850e-47 |
| Msa0107020 | Msa1283860 | 0.818832 | 1.595169e-52 | -8.615850e-47 |
| Msa0107020 | Msa1284680 | 0.800457 | 1.428641e-48 | -8.615850e-47 |
| Msa0107020 | Msa1327680 | 0.808608 | 2.848314e-50 | -8.615850e-47 |
| Msa0107020 | Msa1330410 | 0.803410 | 3.533253e-49 | -8.615850e-47 |
| Msa0107020 | Msa1342840 | 0.819757 | 9.822831e-53 | -8.615850e-47 |
| Msa0107020 | Msa1359040 | 0.823965 | 1.042734e-53 | -8.615850e-47 |
| Msa0107020 | Msa1438250 | 0.805694 | 1.179529e-49 | -8.615850e-47 |
| Msa0107020 | Msa1466540 | 0.811837 | 5.733252e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107020 | MtrunA17_Chr1g0163181 | 73.510 | 453 | 88 | 5 | 45 | 482 | 3 | 438 | 0.0 | 660 |
| Msa0107020 | MtrunA17_Chr1g0163201 | 71.096 | 429 | 67 | 5 | 62 | 480 | 18 | 399 | 0.0 | 566 |
| Msa0107020 | MtrunA17_Chr1g0163251 | 53.623 | 345 | 129 | 5 | 50 | 387 | 8 | 328 | 1.10e-113 | 340 |
| Msa0107020 | MtrunA17_Chr1g0163251 | 58.824 | 51 | 21 | 0 | 1 | 51 | 243 | 293 | 2.11e-11 | 65.5 |
| Msa0107020 | MtrunA17_Chr1g0163151 | 66.932 | 251 | 51 | 2 | 227 | 474 | 1 | 222 | 1.32e-112 | 331 |
| Msa0107020 | MtrunA17_Chr1g0163151 | 32.593 | 135 | 74 | 4 | 3 | 124 | 79 | 209 | 5.52e-11 | 62.4 |
| Msa0107020 | MtrunA17_Chr1g0163111 | 65.873 | 252 | 61 | 5 | 227 | 475 | 1 | 230 | 1.98e-106 | 316 |
| Msa0107020 | MtrunA17_Chr1g0163261 | 43.564 | 303 | 134 | 4 | 56 | 349 | 18 | 292 | 9.28e-79 | 248 |
| Msa0107020 | MtrunA17_Chr1g0163231 | 44.872 | 312 | 125 | 8 | 45 | 342 | 3 | 281 | 1.49e-77 | 244 |
| Msa0107020 | MtrunA17_Chr1g0163191 | 74.157 | 178 | 26 | 2 | 44 | 221 | 2 | 159 | 2.43e-74 | 231 |
| Msa0107020 | MtrunA17_Chr1g0171611 | 44.728 | 313 | 112 | 8 | 45 | 342 | 3 | 269 | 1.58e-73 | 234 |
| Msa0107020 | MtrunA17_Chr1g0163241 | 59.091 | 176 | 36 | 3 | 44 | 218 | 8 | 148 | 1.39e-57 | 188 |
| Msa0107020 | MtrunA17_Chr6g0476171 | 34.672 | 274 | 141 | 6 | 208 | 473 | 2 | 245 | 1.19e-41 | 149 |
| Msa0107020 | MtrunA17_Chr6g0476171 | 45.600 | 125 | 50 | 5 | 1 | 111 | 98 | 218 | 3.55e-19 | 87.0 |
| Msa0107020 | MtrunA17_Chr1g0162151 | 36.255 | 251 | 108 | 6 | 227 | 471 | 1 | 205 | 6.22e-39 | 140 |
| Msa0107020 | MtrunA17_Chr1g0208771 | 26.652 | 469 | 262 | 14 | 62 | 472 | 12 | 456 | 4.37e-38 | 144 |
| Msa0107020 | MtrunA17_Chr1g0163131 | 32.646 | 291 | 178 | 9 | 56 | 339 | 27 | 306 | 2.55e-37 | 139 |
| Msa0107020 | MtrunA17_Chr1g0163131 | 37.500 | 160 | 83 | 6 | 331 | 475 | 151 | 308 | 2.17e-20 | 91.7 |
| Msa0107020 | MtrunA17_Chr8g0390841 | 26.761 | 497 | 282 | 17 | 45 | 472 | 33 | 516 | 1.35e-36 | 141 |
| Msa0107020 | MtrunA17_Chr7g0233561 | 31.988 | 322 | 180 | 11 | 51 | 350 | 18 | 322 | 3.81e-34 | 130 |
| Msa0107020 | MtrunA17_Chr3g0131891 | 31.399 | 293 | 176 | 8 | 56 | 340 | 28 | 303 | 2.48e-32 | 126 |
| Msa0107020 | MtrunA17_Chr7g0233521 | 32.982 | 285 | 161 | 9 | 63 | 340 | 2 | 263 | 3.31e-32 | 124 |
| Msa0107020 | MtrunA17_Chr1g0163091 | 43.182 | 132 | 70 | 1 | 227 | 353 | 1 | 132 | 5.54e-32 | 120 |
| Msa0107020 | MtrunA17_Chr7g0233541 | 31.959 | 291 | 173 | 9 | 63 | 340 | 2 | 280 | 4.52e-31 | 121 |
| Msa0107020 | MtrunA17_Chr1g0163101 | 48.246 | 114 | 56 | 2 | 56 | 169 | 26 | 136 | 2.49e-28 | 110 |
| Msa0107020 | MtrunA17_Chr7g0233531 | 32.867 | 286 | 160 | 10 | 63 | 340 | 2 | 263 | 1.64e-26 | 108 |
| Msa0107020 | MtrunA17_Chr3g0103171 | 27.143 | 280 | 181 | 7 | 62 | 338 | 5 | 264 | 1.53e-25 | 105 |
| Msa0107020 | MtrunA17_Chr1g0163071 | 25.962 | 312 | 195 | 8 | 63 | 352 | 2 | 299 | 2.63e-25 | 105 |
| Msa0107020 | MtrunA17_Chr1g0162161 | 43.925 | 107 | 57 | 2 | 63 | 169 | 4 | 107 | 8.09e-25 | 100 |
| Msa0107020 | MtrunA17_Chr1g0163121 | 46.789 | 109 | 55 | 2 | 61 | 169 | 9 | 114 | 1.28e-24 | 99.4 |
| Msa0107020 | MtrunA17_Chr3g0103181 | 24.915 | 293 | 189 | 8 | 51 | 338 | 12 | 278 | 3.27e-24 | 102 |
| Msa0107020 | MtrunA17_Chr4g0067431 | 27.362 | 307 | 193 | 9 | 51 | 338 | 15 | 310 | 6.02e-24 | 102 |
| Msa0107020 | MtrunA17_Chr6g0476181 | 42.400 | 125 | 65 | 3 | 63 | 186 | 2 | 120 | 2.64e-23 | 96.3 |
| Msa0107020 | MtrunA17_Chr1g0163081 | 40.909 | 110 | 62 | 2 | 63 | 172 | 6 | 112 | 2.44e-22 | 93.2 |
| Msa0107020 | MtrunA17_Chr1g0163221 | 28.618 | 304 | 178 | 11 | 48 | 338 | 12 | 289 | 6.35e-22 | 97.1 |
| Msa0107020 | MtrunA17_Chr7g0233571 | 32.093 | 215 | 131 | 6 | 51 | 257 | 10 | 217 | 2.19e-21 | 92.8 |
| Msa0107020 | MtrunA17_Chr3g0103151 | 37.815 | 119 | 68 | 3 | 51 | 165 | 12 | 128 | 9.69e-20 | 86.3 |
| Msa0107020 | MtrunA17_Chr1g0163141 | 42.000 | 100 | 57 | 1 | 59 | 158 | 7 | 105 | 2.01e-19 | 85.9 |
| Msa0107020 | MtrunA17_Chr3g0103191 | 30.723 | 166 | 109 | 4 | 51 | 210 | 12 | 177 | 1.02e-18 | 85.5 |
| Msa0107020 | MtrunA17_Chr5g0419201 | 34.815 | 135 | 81 | 2 | 56 | 183 | 25 | 159 | 3.84e-18 | 82.4 |
| Msa0107020 | MtrunA17_Chr1g0163161 | 42.105 | 95 | 52 | 2 | 75 | 169 | 1 | 92 | 1.13e-17 | 79.3 |
| Msa0107020 | MtrunA17_Chr6g0467351 | 35.000 | 120 | 70 | 3 | 55 | 166 | 23 | 142 | 5.50e-15 | 74.3 |
| Msa0107020 | MtrunA17_Chr1g0154041 | 23.659 | 317 | 191 | 10 | 59 | 328 | 27 | 339 | 1.60e-13 | 72.8 |
| Msa0107020 | MtrunA17_Chr3g0077461 | 26.425 | 193 | 132 | 4 | 1 | 187 | 187 | 375 | 1.21e-12 | 69.7 |
| Msa0107020 | MtrunA17_Chr3g0077411 | 20.468 | 342 | 224 | 8 | 4 | 338 | 215 | 515 | 1.77e-12 | 69.3 |
| Msa0107020 | MtrunA17_Chr4g0033961 | 36.364 | 99 | 57 | 2 | 51 | 143 | 6 | 104 | 2.73e-12 | 68.6 |
| Msa0107020 | MtrunA17_Chr1g0162441 | 33.945 | 109 | 65 | 3 | 51 | 152 | 7 | 115 | 1.32e-11 | 66.6 |
| Msa0107020 | MtrunA17_Chr5g0419211 | 32.632 | 95 | 63 | 1 | 261 | 354 | 10 | 104 | 5.59e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107020 | AT3G18990.2 | 23.442 | 337 | 211 | 8 | 51 | 343 | 6 | 339 | 1.23e-20 | 94.0 |
| Msa0107020 | AT3G18990.1 | 23.653 | 334 | 208 | 8 | 51 | 340 | 6 | 336 | 1.94e-20 | 92.8 |
Find 101 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTAGCTGTGCTTCTTTA+AGG | 0.068553 | 1_3:+16970570 | Msa0107020:CDS |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.180110 | 1_3:+16968353 | Msa0107020:CDS |
| AAATATCTTGGAGTTGAAAA+TGG | 0.201158 | 1_3:+16970371 | Msa0107020:CDS |
| ATAAATATCCAGCACTTTAA+AGG | 0.218530 | 1_3:-16970620 | None:intergenic |
| GGTAATGTGCTTTAAACTTT+AGG | 0.223091 | 1_3:+16970726 | Msa0107020:three_prime_UTR |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1_3:-16968218 | None:intergenic |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1_3:-16968459 | None:intergenic |
| CATTAACAGCTTCAGATCTT+AGG | 0.270045 | 1_3:-16969068 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1_3:+16968222 | Msa0107020:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_3:+16968309 | Msa0107020:CDS |
| TTAATGGAACTACAACAATA+AGG | 0.294713 | 1_3:+16969261 | Msa0107020:CDS |
| GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 1_3:+16970540 | Msa0107020:CDS |
| AGAGCAATACCCTTTACTTT+TGG | 0.307014 | 1_3:-16969671 | None:intergenic |
| TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 1_3:-16968260 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1_3:-16969431 | None:intergenic |
| AGGCATGGTTCCTTTGTAGC+TGG | 0.320210 | 1_3:-16966939 | None:intergenic |
| AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 1_3:-16969479 | None:intergenic |
| CTCTTGACTTTCAAATTCAT+TGG | 0.331789 | 1_3:+16968380 | Msa0107020:CDS |
| CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 1_3:-16969473 | None:intergenic |
| TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 1_3:-16968259 | None:intergenic |
| TGTTCTCTTGAAAACTCATT+TGG | 0.346666 | 1_3:-16969227 | None:intergenic |
| CTGGTCCTTTGAGTTTGCTT+TGG | 0.352785 | 1_3:-16968644 | None:intergenic |
| ATCACAGAACAGTACTTCTT+AGG | 0.358033 | 1_3:-16970699 | None:intergenic |
| AATATCTTGGAGTTGAAAAT+GGG | 0.359463 | 1_3:+16970372 | Msa0107020:CDS |
| TGAAACAGAGGATACCTAAT+TGG | 0.359645 | 1_3:+16966688 | Msa0107020:intron |
| CGACGTTAAATTTCGATGAA+TGG | 0.363870 | 1_3:+16966790 | Msa0107020:five_prime_UTR |
| TAATGGAACTACAACAATAA+GGG | 0.368234 | 1_3:+16969262 | Msa0107020:CDS |
| TGCTTTGCCCTTTAAAGTGC+TGG | 0.375844 | 1_3:+16970612 | Msa0107020:three_prime_UTR |
| ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 1_3:-16968582 | None:intergenic |
| TCATGATTCATAAACTCCTT+TGG | 0.383485 | 1_3:-16970348 | None:intergenic |
| TATGAATCATGAAAATATCT+TGG | 0.394934 | 1_3:+16970359 | Msa0107020:CDS |
| CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 1_3:-16968268 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1_3:-16968435 | None:intergenic |
| CCTTAAAGAAGCACAGCTAA+TGG | 0.407485 | 1_3:-16970570 | None:intergenic |
| AGCAGCTCTGCAAGAGGCTA+AGG | 0.411495 | 1_3:+16966384 | Msa0107020:five_prime_UTR |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1_3:+16969351 | Msa0107020:CDS |
| TAAATATCCAGCACTTTAAA+GGG | 0.428813 | 1_3:-16970619 | None:intergenic |
| TTTAGGTTCTATGATATTTG+TGG | 0.430149 | 1_3:+16970743 | Msa0107020:three_prime_UTR |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 1_3:+16970477 | Msa0107020:CDS |
| AGCTACAAAGGAACCATGCC+TGG | 0.433161 | 1_3:+16966941 | Msa0107020:CDS |
| AAATATTATGAGAGTCTTTG+TGG | 0.437608 | 1_3:+16970420 | Msa0107020:CDS |
| ATAGTAATTGTGAATGAAAG+TGG | 0.438268 | 1_3:-16966912 | None:intergenic |
| AGTCTTTGTGGCTGTAAGTT+CGG | 0.438865 | 1_3:+16970432 | Msa0107020:CDS |
| CAAACTCAAAGGACCAGAAA+TGG | 0.451853 | 1_3:+16968650 | Msa0107020:CDS |
| TTGACTTTCAAATTCATTGG+TGG | 0.455682 | 1_3:+16968383 | Msa0107020:CDS |
| GGCATGGTTCCTTTGTAGCT+GGG | 0.456521 | 1_3:-16966938 | None:intergenic |
| AGGAGCCATCCAAAAGTAAA+GGG | 0.477165 | 1_3:+16969662 | Msa0107020:CDS |
| TAGGAGCCATCCAAAAGTAA+AGG | 0.478853 | 1_3:+16969661 | Msa0107020:CDS |
| CAAAGTGGCCATGGTAAAGA+AGG | 0.488314 | 1_3:+16969035 | Msa0107020:CDS |
| TGAAAATGGGGAGAAAATCA+TGG | 0.492046 | 1_3:+16970385 | Msa0107020:CDS |
| TGACATTATAACTTCAAAAG+AGG | 0.495408 | 1_3:-16969097 | None:intergenic |
| TGTGGCTGTAAGTTCGGTAA+AGG | 0.504977 | 1_3:+16970438 | Msa0107020:CDS |
| CCATGCCTGGAGCAGTTTCA+AGG | 0.511461 | 1_3:+16966954 | Msa0107020:CDS |
| AAGTACTGTTCTGTGATTGT+TGG | 0.512108 | 1_3:+16970705 | Msa0107020:three_prime_UTR |
| GCTGTAAGTTCGGTAAAGGT+TGG | 0.518813 | 1_3:+16970442 | Msa0107020:CDS |
| AAATACCTTGAAACTGCTCC+AGG | 0.519839 | 1_3:-16966959 | None:intergenic |
| TGGTTGGAAGTCGTTTGTGC+AGG | 0.521812 | 1_3:+16966836 | Msa0107020:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 1_3:+16968668 | Msa0107020:CDS |
| GACATTATAACTTCAAAAGA+GGG | 0.525934 | 1_3:-16969096 | None:intergenic |
| AAGACATTGGAGGAACATCT+AGG | 0.526190 | 1_3:+16969642 | Msa0107020:CDS |
| GTGACTGTTACTGAAGTGTT+AGG | 0.532912 | 1_3:+16966293 | None:intergenic |
| GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 1_3:+16970097 | Msa0107020:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1_3:+16968461 | Msa0107020:CDS |
| GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 1_3:+16968572 | Msa0107020:CDS |
| GCAAGAGGCTAAGGCTCTGA+TGG | 0.545145 | 1_3:+16966393 | Msa0107020:five_prime_UTR |
| AAGAGATATCCATATTTGAA+AGG | 0.549102 | 1_3:-16968362 | None:intergenic |
| GAGTGATGAGAGTTCAGATG+AGG | 0.552149 | 1_3:+16968613 | Msa0107020:CDS |
| CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 1_3:+16969473 | Msa0107020:CDS |
| GTTGTAAAGAAGCAAGACAT+TGG | 0.558494 | 1_3:+16969629 | Msa0107020:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.558627 | 1_3:+16969276 | Msa0107020:CDS |
| TACAGAAGGTCGTGATGTGA+AGG | 0.563378 | 1_3:+16970079 | Msa0107020:intron |
| AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 1_3:+16968556 | Msa0107020:CDS |
| TACATGAAAGAGTTGTTGCA+AGG | 0.571480 | 1_3:+16966723 | Msa0107020:five_prime_UTR |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 1_3:+16969026 | Msa0107020:intron |
| CCTTGAAACTGCTCCAGGCA+TGG | 0.579128 | 1_3:-16966954 | None:intergenic |
| AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 1_3:+16969339 | Msa0107020:CDS |
| GTAAATTTGAGATGATTCAA+CGG | 0.588165 | 1_3:+16969405 | Msa0107020:CDS |
| GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 1_3:+16968482 | Msa0107020:CDS |
| ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 1_3:+16968263 | Msa0107020:CDS |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1_3:+16968211 | Msa0107020:intron |
| AAGAGTAGCAGCTCTGCAAG+AGG | 0.595627 | 1_3:+16966378 | Msa0107020:five_prime_UTR |
| GGAACTACAACAATAAGGGT+TGG | 0.596420 | 1_3:+16969266 | Msa0107020:CDS |
| GTATCTGCAGTGTGTACCAA+AGG | 0.598126 | 1_3:+16970332 | Msa0107020:intron |
| GTAAAGAAGCAAGACATTGG+AGG | 0.602206 | 1_3:+16969632 | Msa0107020:CDS |
| ACTTACAAAGAAATAGCCAT+TGG | 0.605595 | 1_3:-16969130 | None:intergenic |
| ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 1_3:+16969114 | Msa0107020:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1_3:+16969283 | Msa0107020:CDS |
| TACTATTATCCCAGCTACAA+AGG | 0.605894 | 1_3:+16966929 | Msa0107020:CDS |
| ACATGAAAGAGTTGTTGCAA+GGG | 0.610644 | 1_3:+16966724 | Msa0107020:five_prime_UTR |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_3:+16968227 | Msa0107020:CDS |
| ATTCATGAAAGAATGCAAAG+TGG | 0.625279 | 1_3:+16970470 | Msa0107020:CDS |
| CAGGAACATAACTTGCAAGC+TGG | 0.628096 | 1_3:+16966855 | Msa0107020:CDS |
| TTTCGTGAAGAACAAAACCC+CGG | 0.628138 | 1_3:+16970121 | Msa0107020:CDS |
| ATATCTTGGAGTTGAAAATG+GGG | 0.639227 | 1_3:+16970373 | Msa0107020:CDS |
| AACGATTAGAAATGTTGATG+AGG | 0.639795 | 1_3:+16966752 | Msa0107020:five_prime_UTR |
| GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 1_3:+16969297 | Msa0107020:CDS |
| TAGCTTTAAGCATTGCTCAG+AGG | 0.663605 | 1_3:+16966346 | Msa0107020:five_prime_UTR |
| AAACACCAAAGCAAACTCAA+AGG | 0.664353 | 1_3:+16968639 | Msa0107020:CDS |
| CTTGGCAGGTAGTAACAAAG+TGG | 0.671173 | 1_3:+16969020 | Msa0107020:intron |
| GAAGTGTTAGGACCAGACAA+AGG | 0.713261 | 1_3:+16966305 | Msa0107020:five_prime_UTR |
| ATGTTGATGAGGACATGACA+TGG | 0.737782 | 1_3:+16966763 | Msa0107020:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATGTATATTTCTTAATT+TGG | + | chr1_3:16969772-16969791 | Msa0107020:intron | 10.0% |
| !!! | TCAAATATATCTAAATTTTT+TGG | + | chr1_3:16970007-16970026 | Msa0107020:intron | 10.0% |
| !!! | CAAATATATCTAAATTTTTT+GGG | + | chr1_3:16970008-16970027 | Msa0107020:intron | 10.0% |
| !! | AACCAAATACTTATTTATTA+TGG | - | chr1_3:16967118-16967137 | None:intergenic | 15.0% |
| !!! | ATTTAATCAATTTTGTTTGT+TGG | + | chr1_3:16967396-16967415 | Msa0107020:intron | 15.0% |
| !!! | ATTTTCTATCTAATTTTTTC+TGG | - | chr1_3:16967841-16967860 | None:intergenic | 15.0% |
| !!! | TAAAGATATTTTTTGTAGTA+TGG | - | chr1_3:16967918-16967937 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1_3:16968286-16968305 | Msa0107020:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1_3:16968324-16968343 | Msa0107020:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1_3:16968325-16968344 | Msa0107020:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1_3:16968410-16968429 | Msa0107020:CDS | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | - | chr1_3:16968438-16968457 | None:intergenic | 15.0% |
| !!! | TTATTTTAAGAGTTATTGAA+TGG | + | chr1_3:16968775-16968794 | Msa0107020:intron | 15.0% |
| !!! | AAATGTGATTTTTTTTTTGT+AGG | + | chr1_3:16968881-16968900 | Msa0107020:intron | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1_3:16969498-16969517 | Msa0107020:intron | 15.0% |
| !!! | TTTAGATTTTATTATTGTAG+AGG | + | chr1_3:16969709-16969728 | Msa0107020:intron | 15.0% |
| !!! | TTAGATTTTATTATTGTAGA+GGG | + | chr1_3:16969710-16969729 | Msa0107020:intron | 15.0% |
| !! | AAACTTATGAATGATTTATA+AGG | + | chr1_3:16969800-16969819 | Msa0107020:intron | 15.0% |
| !! | TAAAAAATATTTCAATTCAC+AGG | - | chr1_3:16969876-16969895 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1_3:16969993-16970012 | None:intergenic | 15.0% |
| !! | TTTATGTAATTATATCTTAC+CGG | - | chr1_3:16970143-16970162 | None:intergenic | 15.0% |
| !! | ATTCATTAATCAAACGTATA+AGG | - | chr1_3:16966636-16966655 | None:intergenic | 20.0% |
| !!! | TATTCTTTTGAAATCCAATT+AGG | - | chr1_3:16966705-16966724 | None:intergenic | 20.0% |
| !!! | TCTTTCGTTATTATTGTTTT+TGG | + | chr1_3:16966981-16967000 | Msa0107020:intron | 20.0% |
| !! | CACCATAATAAATAAGTATT+TGG | + | chr1_3:16967113-16967132 | Msa0107020:intron | 20.0% |
| !! | ATTATGCATGTATATATTAC+AGG | + | chr1_3:16967179-16967198 | Msa0107020:intron | 20.0% |
| !! | TTATGCATGTATATATTACA+GGG | + | chr1_3:16967180-16967199 | Msa0107020:intron | 20.0% |
| !!! | AATATATTCCAGATTTTCAT+AGG | + | chr1_3:16968046-16968065 | Msa0107020:intron | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1_3:16968285-16968304 | Msa0107020:CDS | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1_3:16969434-16969453 | None:intergenic | 20.0% |
| !! | TTATGTAATTATATCTTACC+GGG | - | chr1_3:16970142-16970161 | None:intergenic | 20.0% |
| !! | AGGTTAAAAGTTAATAGAAT+GGG | - | chr1_3:16970255-16970274 | None:intergenic | 20.0% |
| !! | TACAAACAAAAATATTAGTG+AGG | - | chr1_3:16970315-16970334 | None:intergenic | 20.0% |
| !! | TATGAATCATGAAAATATCT+TGG | + | chr1_3:16970359-16970378 | Msa0107020:CDS | 20.0% |
| !!! | CAATTTTAAGCATTGTATTT+TGG | + | chr1_3:16970648-16970667 | Msa0107020:three_prime_UTR | 20.0% |
| !!! | TATGTTGTTTTAGTTGAGTT+TGG | + | chr1_3:16966572-16966591 | Msa0107020:intron | 25.0% |
| ! | ACCTTATTACAACATATAAG+CGG | - | chr1_3:16966608-16966627 | None:intergenic | 25.0% |
| ! | TATATGTTGTAATAAGGTTC+AGG | + | chr1_3:16966610-16966629 | Msa0107020:intron | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | - | chr1_3:16966915-16966934 | None:intergenic | 25.0% |
| ! | TCAATCATATATGTTCATCA+TGG | + | chr1_3:16967084-16967103 | Msa0107020:intron | 25.0% |
| !!! | GGTTTTAGTCATTCTAATAT+TGG | + | chr1_3:16967134-16967153 | Msa0107020:intron | 25.0% |
| !!! | AGTTTTTTTCCAAGTACTAA+AGG | + | chr1_3:16967287-16967306 | Msa0107020:intron | 25.0% |
| ! | TATATATCACCTTTAGTACT+TGG | - | chr1_3:16967299-16967318 | None:intergenic | 25.0% |
| !! | ACTTTATGATGACATAGTTT+TGG | - | chr1_3:16967446-16967465 | None:intergenic | 25.0% |
| !!! | TTTTTACATAAGGTACTGTA+GGG | - | chr1_3:16967654-16967673 | None:intergenic | 25.0% |
| !!! | ATTTTTACATAAGGTACTGT+AGG | - | chr1_3:16967655-16967674 | None:intergenic | 25.0% |
| ! | TACAGTACCTTATGTAAAAA+TGG | + | chr1_3:16967654-16967673 | Msa0107020:intron | 25.0% |
| !!! | ATATCTGCCATTTTTACATA+AGG | - | chr1_3:16967664-16967683 | None:intergenic | 25.0% |
| ! | TGTAAAAATGGCAGATATTA+AGG | + | chr1_3:16967666-16967685 | Msa0107020:intron | 25.0% |
| ! | GTAAAAATGGCAGATATTAA+GGG | + | chr1_3:16967667-16967686 | Msa0107020:intron | 25.0% |
| ! | GCATACATTAAAAAACACAA+TGG | - | chr1_3:16967699-16967718 | None:intergenic | 25.0% |
| !!! | CTTTTTTATCGTGTCATAAA+TGG | + | chr1_3:16967785-16967804 | Msa0107020:intron | 25.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | - | chr1_3:16968221-16968240 | None:intergenic | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | + | chr1_3:16968222-16968241 | Msa0107020:CDS | 25.0% |
| ! | TAGGAAACTTAAGGAATATA+GGG | - | chr1_3:16968262-16968281 | None:intergenic | 25.0% |
| ! | TTAGGAAACTTAAGGAATAT+AGG | - | chr1_3:16968263-16968282 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAGTTTCCTAA+CGG | + | chr1_3:16968263-16968282 | Msa0107020:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1_3:16968289-16968308 | Msa0107020:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | - | chr1_3:16968365-16968384 | None:intergenic | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr1_3:16968462-16968481 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr1_3:16968461-16968480 | Msa0107020:CDS | 25.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | + | chr1_3:16969002-16969021 | Msa0107020:intron | 25.0% |
| ! | GACATTATAACTTCAAAAGA+GGG | - | chr1_3:16969099-16969118 | None:intergenic | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | - | chr1_3:16969100-16969119 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1_3:16969245-16969264 | Msa0107020:CDS | 25.0% |
| ! | TTAATGGAACTACAACAATA+AGG | + | chr1_3:16969261-16969280 | Msa0107020:CDS | 25.0% |
| ! | TAATGGAACTACAACAATAA+GGG | + | chr1_3:16969262-16969281 | Msa0107020:CDS | 25.0% |
| ! | TACCCAGAAAAAATATTGTA+TGG | + | chr1_3:16969328-16969347 | Msa0107020:CDS | 25.0% |
| ! | ACCCAGAAAAAATATTGTAT+GGG | + | chr1_3:16969329-16969348 | Msa0107020:CDS | 25.0% |
| !!! | ACCCATACAATATTTTTTCT+GGG | - | chr1_3:16969333-16969352 | None:intergenic | 25.0% |
| !! | GTAAATTTGAGATGATTCAA+CGG | + | chr1_3:16969405-16969424 | Msa0107020:CDS | 25.0% |
| !!! | TTTTTTTGTTATCCTTGACA+AGG | + | chr1_3:16969575-16969594 | Msa0107020:intron | 25.0% |
| ! | CTTGACAAGGTTATAAAAAA+GGG | + | chr1_3:16969588-16969607 | Msa0107020:intron | 25.0% |
| ! | TTGACAAGGTTATAAAAAAG+GGG | + | chr1_3:16969589-16969608 | Msa0107020:intron | 25.0% |
| ! | TGAATGATTTATAAGGTTCT+TGG | + | chr1_3:16969807-16969826 | Msa0107020:intron | 25.0% |
| ! | TAAAAGAAGAAACTGAAAAC+TGG | - | chr1_3:16969962-16969981 | None:intergenic | 25.0% |
| ! | TATGTAATTATATCTTACCG+GGG | - | chr1_3:16970141-16970160 | None:intergenic | 25.0% |
| ! | ATTGAACGAAAGTTAGTTAT+GGG | - | chr1_3:16970196-16970215 | None:intergenic | 25.0% |
| ! | AATTGAACGAAAGTTAGTTA+TGG | - | chr1_3:16970197-16970216 | None:intergenic | 25.0% |
| ! | GAGGTTAAAAGTTAATAGAA+TGG | - | chr1_3:16970256-16970275 | None:intergenic | 25.0% |
| ! | AAATATCTTGGAGTTGAAAA+TGG | + | chr1_3:16970371-16970390 | Msa0107020:CDS | 25.0% |
| ! | AATATCTTGGAGTTGAAAAT+GGG | + | chr1_3:16970372-16970391 | Msa0107020:CDS | 25.0% |
| ! | AAATATTATGAGAGTCTTTG+TGG | + | chr1_3:16970420-16970439 | Msa0107020:CDS | 25.0% |
| ! | TAAATATCCAGCACTTTAAA+GGG | - | chr1_3:16970622-16970641 | None:intergenic | 25.0% |
| ! | ATAAATATCCAGCACTTTAA+AGG | - | chr1_3:16970623-16970642 | None:intergenic | 25.0% |
| !! | TTTAGGTTCTATGATATTTG+TGG | + | chr1_3:16970743-16970762 | Msa0107020:three_prime_UTR | 25.0% |
| ! | TTCTGAATTTTTCCTTTGTC+TGG | - | chr1_3:16966320-16966339 | None:intergenic | 30.0% |
| CATGACAGTCAAACATATTT+GGG | - | chr1_3:16966477-16966496 | None:intergenic | 30.0% | |
| TCATGACAGTCAAACATATT+TGG | - | chr1_3:16966478-16966497 | None:intergenic | 30.0% | |
| AACGATTAGAAATGTTGATG+AGG | + | chr1_3:16966752-16966771 | Msa0107020:five_prime_UTR | 30.0% | |
| !!! | TTTGGCTCAAATCACTTTTT+AGG | - | chr1_3:16967428-16967447 | None:intergenic | 30.0% |
| GAATGAAACATTCAATGACT+CGG | + | chr1_3:16967503-16967522 | Msa0107020:intron | 30.0% | |
| !!! | CTTTTAATTTGCCACAAAAG+CGG | - | chr1_3:16967587-16967606 | None:intergenic | 30.0% |
| !!! | TTTTTCTGGTGTTACTACTT+TGG | - | chr1_3:16967827-16967846 | None:intergenic | 30.0% |
| AAGATGATCCTATGAAAATC+TGG | - | chr1_3:16968057-16968076 | None:intergenic | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | + | chr1_3:16968192-16968211 | Msa0107020:intron | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | + | chr1_3:16968193-16968212 | Msa0107020:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1_3:16968227-16968246 | Msa0107020:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+AGG | - | chr1_3:16968281-16968300 | None:intergenic | 30.0% |
| TTTGCAAAGCCTTTCAAATA+TGG | + | chr1_3:16968353-16968372 | Msa0107020:CDS | 30.0% | |
| CTCTTGACTTTCAAATTCAT+TGG | + | chr1_3:16968380-16968399 | Msa0107020:CDS | 30.0% | |
| TTGACTTTCAAATTCATTGG+TGG | + | chr1_3:16968383-16968402 | Msa0107020:CDS | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr1_3:16968397-16968416 | Msa0107020:CDS | 30.0% |
| !!! | AGGTGAGTTTGATCTTTTTT+GGG | + | chr1_3:16968688-16968707 | Msa0107020:intron | 30.0% |
| !!! | GATCTTTTTTGGGTAGATTT+AGG | + | chr1_3:16968698-16968717 | Msa0107020:intron | 30.0% |
| ! | AGAGTTATTGAATGGTTTGT+TGG | + | chr1_3:16968783-16968802 | Msa0107020:intron | 30.0% |
| ! | GTTGGAATTTTATGTCTGAA+AGG | + | chr1_3:16968801-16968820 | Msa0107020:intron | 30.0% |
| ACTTACAAAGAAATAGCCAT+TGG | - | chr1_3:16969133-16969152 | None:intergenic | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | + | chr1_3:16969201-16969220 | Msa0107020:intron | 30.0% | |
| TGTTCTCTTGAAAACTCATT+TGG | - | chr1_3:16969230-16969249 | None:intergenic | 30.0% | |
| !!! | CACCCATACAATATTTTTTC+TGG | - | chr1_3:16969334-16969353 | None:intergenic | 30.0% |
| CAGAAAAAATATTGTATGGG+TGG | + | chr1_3:16969332-16969351 | Msa0107020:CDS | 30.0% | |
| AAAAAATATTGTATGGGTGG+TGG | + | chr1_3:16969335-16969354 | Msa0107020:CDS | 30.0% | |
| AGAAAACCTAGTGATTTCTT+TGG | - | chr1_3:16969482-16969501 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTATAACCTTGTCA+AGG | - | chr1_3:16969590-16969609 | None:intergenic | 30.0% |
| CCTTGACAAGGTTATAAAAA+AGG | + | chr1_3:16969587-16969606 | Msa0107020:intron | 30.0% | |
| ! | AATGGGATTAACTTGACTAA+CGG | - | chr1_3:16970238-16970257 | None:intergenic | 30.0% |
| ! | CTTTTAACCTCTAATGTGTA+AGG | + | chr1_3:16970265-16970284 | Msa0107020:intron | 30.0% |
| TCATGATTCATAAACTCCTT+TGG | - | chr1_3:16970351-16970370 | None:intergenic | 30.0% | |
| ATATCTTGGAGTTGAAAATG+GGG | + | chr1_3:16970373-16970392 | Msa0107020:CDS | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | + | chr1_3:16970470-16970489 | Msa0107020:CDS | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | + | chr1_3:16970540-16970559 | Msa0107020:CDS | 30.0% | |
| ! | GGTAATGTGCTTTAAACTTT+AGG | + | chr1_3:16970726-16970745 | Msa0107020:three_prime_UTR | 30.0% |
| ATCCAAACTCGTTCCAAAAA+GGG | + | chr1_3:16966435-16966454 | Msa0107020:intron | 35.0% | |
| !! | GCTTTTGATTACACCCTTTT+TGG | - | chr1_3:16966451-16966470 | None:intergenic | 35.0% |
| ATGCAAAGAAGCAAATCAAC+TGG | - | chr1_3:16966551-16966570 | None:intergenic | 35.0% | |
| GCCGCTTATATGTTGTAATA+AGG | + | chr1_3:16966604-16966623 | Msa0107020:intron | 35.0% | |
| ! | TAAACCATGATCTGAAACAG+AGG | + | chr1_3:16966676-16966695 | Msa0107020:intron | 35.0% |
| TGAAACAGAGGATACCTAAT+TGG | + | chr1_3:16966688-16966707 | Msa0107020:intron | 35.0% | |
| TACATGAAAGAGTTGTTGCA+AGG | + | chr1_3:16966723-16966742 | Msa0107020:five_prime_UTR | 35.0% | |
| ACATGAAAGAGTTGTTGCAA+GGG | + | chr1_3:16966724-16966743 | Msa0107020:five_prime_UTR | 35.0% | |
| CGACGTTAAATTTCGATGAA+TGG | + | chr1_3:16966790-16966809 | Msa0107020:five_prime_UTR | 35.0% | |
| TACTATTATCCCAGCTACAA+AGG | + | chr1_3:16966929-16966948 | Msa0107020:CDS | 35.0% | |
| GTGATGATACACACACAAAT+AGG | + | chr1_3:16967550-16967569 | Msa0107020:intron | 35.0% | |
| ACTTTATTACTGTCCAGTAC+AGG | - | chr1_3:16967883-16967902 | None:intergenic | 35.0% | |
| ACTGGACAGTAATAAAGTCT+TGG | + | chr1_3:16967885-16967904 | Msa0107020:intron | 35.0% | |
| !! | GGTGAAAGATTTTGAGTGTT+AGG | - | chr1_3:16967974-16967993 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1_3:16968299-16968318 | Msa0107020:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1_3:16968309-16968328 | Msa0107020:CDS | 35.0% | |
| AAGTGATGAATCAAGTGATG+AGG | + | chr1_3:16968556-16968575 | Msa0107020:CDS | 35.0% | |
| ACTTTCTTCACCTTCTTCAA+TGG | - | chr1_3:16968585-16968604 | None:intergenic | 35.0% | |
| AAACACCAAAGCAAACTCAA+AGG | + | chr1_3:16968639-16968658 | Msa0107020:CDS | 35.0% | |
| !! | GAATTTTCTCTTGCCATTTC+TGG | - | chr1_3:16968666-16968685 | None:intergenic | 35.0% |
| AATGGCAAGAGAAAATTCTC+AGG | + | chr1_3:16968668-16968687 | Msa0107020:CDS | 35.0% | |
| !!! | CAGGTGAGTTTGATCTTTTT+TGG | + | chr1_3:16968687-16968706 | Msa0107020:intron | 35.0% |
| !! | TTTTCTAGCCTTCTTTACCA+TGG | - | chr1_3:16969046-16969065 | None:intergenic | 35.0% |
| CATTAACAGCTTCAGATCTT+AGG | - | chr1_3:16969071-16969090 | None:intergenic | 35.0% | |
| ! | GTATCCACTGTTTCAAGTAA+TGG | - | chr1_3:16969208-16969227 | None:intergenic | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1_3:16969276-16969295 | Msa0107020:CDS | 35.0% |
| TATAAAAAAGGGGTCTCTTG+TGG | + | chr1_3:16969599-16969618 | Msa0107020:CDS | 35.0% | |
| GTTGTAAAGAAGCAAGACAT+TGG | + | chr1_3:16969629-16969648 | Msa0107020:CDS | 35.0% | |
| !! | CAATACCCTTTACTTTTGGA+TGG | - | chr1_3:16969670-16969689 | None:intergenic | 35.0% |
| ! | AGAGCAATACCCTTTACTTT+TGG | - | chr1_3:16969674-16969693 | None:intergenic | 35.0% |
| TGTGTTTATGCATGTACAGA+AGG | + | chr1_3:16970065-16970084 | Msa0107020:intron | 35.0% | |
| TTAACCTCTAATGTGTAAGG+TGG | + | chr1_3:16970268-16970287 | Msa0107020:intron | 35.0% | |
| TGAAAATGGGGAGAAAATCA+TGG | + | chr1_3:16970385-16970404 | Msa0107020:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1_3:16970477-16970496 | Msa0107020:CDS | 35.0% | |
| ATCACAGAACAGTACTTCTT+AGG | - | chr1_3:16970702-16970721 | None:intergenic | 35.0% | |
| ! | AAGTACTGTTCTGTGATTGT+TGG | + | chr1_3:16970705-16970724 | Msa0107020:three_prime_UTR | 35.0% |
| !! | TAGCTTTAAGCATTGCTCAG+AGG | + | chr1_3:16966346-16966365 | Msa0107020:five_prime_UTR | 40.0% |
| CATCCAAACTCGTTCCAAAA+AGG | + | chr1_3:16966434-16966453 | Msa0107020:intron | 40.0% | |
| GTATCCTCTGTTTCAGATCA+TGG | - | chr1_3:16966683-16966702 | None:intergenic | 40.0% | |
| ! | ATGTTGATGAGGACATGACA+TGG | + | chr1_3:16966763-16966782 | Msa0107020:five_prime_UTR | 40.0% |
| !! | TGAAATTTTGCTATGCGAGC+TGG | + | chr1_3:16966816-16966835 | Msa0107020:exon | 40.0% |
| AAATACCTTGAAACTGCTCC+AGG | - | chr1_3:16966962-16966981 | None:intergenic | 40.0% | |
| !! | CAAGCACTGAAACAGAACAA+TGG | + | chr1_3:16967229-16967248 | Msa0107020:intron | 40.0% |
| !! | ACAAAGCAAATCCGCTTTTG+TGG | + | chr1_3:16967573-16967592 | Msa0107020:intron | 40.0% |
| CATTGTGAGCTCATGTGAAA+TGG | + | chr1_3:16967627-16967646 | Msa0107020:intron | 40.0% | |
| !! | TGGTGTTACTACTTTGGTGT+TGG | - | chr1_3:16967821-16967840 | None:intergenic | 40.0% |
| TTTCTCTACATGACCTGTAC+TGG | + | chr1_3:16967867-16967886 | Msa0107020:intron | 40.0% | |
| !! | AGTGAGTGAGTATTGAGCTA+AGG | - | chr1_3:16968010-16968029 | None:intergenic | 40.0% |
| GAGGGTTCCAAAGAAATATG+TGG | + | chr1_3:16968211-16968230 | Msa0107020:intron | 40.0% | |
| CAACACCGTTAGGAAACTTA+AGG | - | chr1_3:16968271-16968290 | None:intergenic | 40.0% | |
| CAAACTCAAAGGACCAGAAA+TGG | + | chr1_3:16968650-16968669 | Msa0107020:CDS | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | + | chr1_3:16969006-16969025 | Msa0107020:intron | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | - | chr1_3:16969017-16969036 | None:intergenic | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | + | chr1_3:16969114-16969133 | Msa0107020:CDS | 40.0% | |
| GGAACTACAACAATAAGGGT+TGG | + | chr1_3:16969266-16969285 | Msa0107020:CDS | 40.0% | |
| !! | AATATTGTATGGGTGGTGGA+TGG | + | chr1_3:16969339-16969358 | Msa0107020:CDS | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | + | chr1_3:16969351-16969370 | Msa0107020:CDS | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | - | chr1_3:16969465-16969484 | None:intergenic | 40.0% |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | - | chr1_3:16969476-16969495 | None:intergenic | 40.0% |
| CCAAAGCCAAAGAAATCACT+AGG | + | chr1_3:16969473-16969492 | Msa0107020:CDS | 40.0% | |
| GTAAAGAAGCAAGACATTGG+AGG | + | chr1_3:16969632-16969651 | Msa0107020:CDS | 40.0% | |
| AAGACATTGGAGGAACATCT+AGG | + | chr1_3:16969642-16969661 | Msa0107020:CDS | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | + | chr1_3:16969661-16969680 | Msa0107020:CDS | 40.0% | |
| AGGAGCCATCCAAAAGTAAA+GGG | + | chr1_3:16969662-16969681 | Msa0107020:CDS | 40.0% | |
| TTTCGTGAAGAACAAAACCC+CGG | + | chr1_3:16970121-16970140 | Msa0107020:CDS | 40.0% | |
| AGTCTTTGTGGCTGTAAGTT+CGG | + | chr1_3:16970432-16970451 | Msa0107020:CDS | 40.0% | |
| ! | CCTTAAAGAAGCACAGCTAA+TGG | - | chr1_3:16970573-16970592 | None:intergenic | 40.0% |
| CCATTAGCTGTGCTTCTTTA+AGG | + | chr1_3:16970570-16970589 | Msa0107020:CDS | 40.0% | |
| ! | GAAGTGTTAGGACCAGACAA+AGG | + | chr1_3:16966305-16966324 | Msa0107020:five_prime_UTR | 45.0% |
| !!! | CACCCTTTTTGGAACGAGTT+TGG | - | chr1_3:16966440-16966459 | None:intergenic | 45.0% |
| !! | ATTTTGCTATGCGAGCTGGT+TGG | + | chr1_3:16966820-16966839 | Msa0107020:exon | 45.0% |
| ! | CAGGAACATAACTTGCAAGC+TGG | + | chr1_3:16966855-16966874 | Msa0107020:CDS | 45.0% |
| TGTATGCAGTGTGAGACTGT+TGG | + | chr1_3:16967712-16967731 | Msa0107020:intron | 45.0% | |
| AGCTAAGGCTTAGAGAAGTG+AGG | - | chr1_3:16967995-16968014 | None:intergenic | 45.0% | |
| GATGAGGAAGCCATTGAAGA+AGG | + | chr1_3:16968572-16968591 | Msa0107020:CDS | 45.0% | |
| GAGTGATGAGAGTTCAGATG+AGG | + | chr1_3:16968613-16968632 | Msa0107020:CDS | 45.0% | |
| ! | CTGGTCCTTTGAGTTTGCTT+TGG | - | chr1_3:16968647-16968666 | None:intergenic | 45.0% |
| CTTGGCAGGTAGTAACAAAG+TGG | + | chr1_3:16969020-16969039 | Msa0107020:intron | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | + | chr1_3:16969026-16969045 | Msa0107020:intron | 45.0% | |
| CAAAGTGGCCATGGTAAAGA+AGG | + | chr1_3:16969035-16969054 | Msa0107020:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1_3:16969283-16969302 | Msa0107020:CDS | 45.0% |
| TACAGAAGGTCGTGATGTGA+AGG | + | chr1_3:16970079-16970098 | Msa0107020:intron | 45.0% | |
| ! | GAAGGAGCACAAGACATTCA+AGG | + | chr1_3:16970097-16970116 | Msa0107020:CDS | 45.0% |
| GTGTCCACCTTACACATTAG+AGG | - | chr1_3:16970275-16970294 | None:intergenic | 45.0% | |
| GTATCTGCAGTGTGTACCAA+AGG | + | chr1_3:16970332-16970351 | Msa0107020:intron | 45.0% | |
| TGTGGCTGTAAGTTCGGTAA+AGG | + | chr1_3:16970438-16970457 | Msa0107020:CDS | 45.0% | |
| GCTGTAAGTTCGGTAAAGGT+TGG | + | chr1_3:16970442-16970461 | Msa0107020:CDS | 45.0% | |
| !! | TGCTTTGCCCTTTAAAGTGC+TGG | + | chr1_3:16970612-16970631 | Msa0107020:three_prime_UTR | 45.0% |
| !! | AAAAATAATAAATACTTAAT+TGG | + | chr1_3:16968933-16968952 | Msa0107020:intron | 5.0% |
| AAGAGTAGCAGCTCTGCAAG+AGG | + | chr1_3:16966378-16966397 | Msa0107020:five_prime_UTR | 50.0% | |
| TGGTTGGAAGTCGTTTGTGC+AGG | + | chr1_3:16966836-16966855 | Msa0107020:CDS | 50.0% | |
| GGCATGGTTCCTTTGTAGCT+GGG | - | chr1_3:16966941-16966960 | None:intergenic | 50.0% | |
| AGGCATGGTTCCTTTGTAGC+TGG | - | chr1_3:16966942-16966961 | None:intergenic | 50.0% | |
| AGCTACAAAGGAACCATGCC+TGG | + | chr1_3:16966941-16966960 | Msa0107020:CDS | 50.0% | |
| ! | GGTGCTGAAGACACAGAAGA+AGG | + | chr1_3:16968482-16968501 | Msa0107020:CDS | 50.0% |
| AGCAGCTCTGCAAGAGGCTA+AGG | + | chr1_3:16966384-16966403 | Msa0107020:five_prime_UTR | 55.0% | |
| ! | GCAAGAGGCTAAGGCTCTGA+TGG | + | chr1_3:16966393-16966412 | Msa0107020:five_prime_UTR | 55.0% |
| CCTTGAAACTGCTCCAGGCA+TGG | - | chr1_3:16966957-16966976 | None:intergenic | 55.0% | |
| CCATGCCTGGAGCAGTTTCA+AGG | + | chr1_3:16966954-16966973 | Msa0107020:CDS | 55.0% | |
| GGAGTGTGGAAGTGAGTGTG+AGG | + | chr1_3:16969297-16969316 | Msa0107020:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 16966296 | 16970826 | 16966296 | ID=Msa0107020;Name=Msa0107020 |
| chr1_3 | mRNA | 16966296 | 16970826 | 16966296 | ID=Msa0107020-mRNA-1;Parent=Msa0107020;Name=Msa0107020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=263|0.25|0.44|1|0.87|0.77|9|236|482 |
| chr1_3 | exon | 16966296 | 16966426 | 16966296 | ID=Msa0107020-mRNA-1:exon:6369;Parent=Msa0107020-mRNA-1 |
| chr1_3 | exon | 16966696 | 16966975 | 16966696 | ID=Msa0107020-mRNA-1:exon:6370;Parent=Msa0107020-mRNA-1 |
| chr1_3 | exon | 16968058 | 16968092 | 16968058 | ID=Msa0107020-mRNA-1:exon:6371;Parent=Msa0107020-mRNA-1 |
| chr1_3 | exon | 16968212 | 16968689 | 16968212 | ID=Msa0107020-mRNA-1:exon:6372;Parent=Msa0107020-mRNA-1 |
| chr1_3 | exon | 16969028 | 16969146 | 16969028 | ID=Msa0107020-mRNA-1:exon:6373;Parent=Msa0107020-mRNA-1 |
| chr1_3 | exon | 16969221 | 16969494 | 16969221 | ID=Msa0107020-mRNA-1:exon:6374;Parent=Msa0107020-mRNA-1 |
| chr1_3 | exon | 16969597 | 16969683 | 16969597 | ID=Msa0107020-mRNA-1:exon:6375;Parent=Msa0107020-mRNA-1 |
| chr1_3 | exon | 16970084 | 16970142 | 16970084 | ID=Msa0107020-mRNA-1:exon:6376;Parent=Msa0107020-mRNA-1 |
| chr1_3 | exon | 16970342 | 16970826 | 16970342 | ID=Msa0107020-mRNA-1:exon:6377;Parent=Msa0107020-mRNA-1 |
| chr1_3 | five_prime_UTR | 16966296 | 16966426 | 16966296 | ID=Msa0107020-mRNA-1:five_prime_utr;Parent=Msa0107020-mRNA-1 |
| chr1_3 | five_prime_UTR | 16966696 | 16966827 | 16966696 | ID=Msa0107020-mRNA-1:five_prime_utr;Parent=Msa0107020-mRNA-1 |
| chr1_3 | CDS | 16966828 | 16966975 | 16966828 | ID=Msa0107020-mRNA-1:cds;Parent=Msa0107020-mRNA-1 |
| chr1_3 | CDS | 16968058 | 16968092 | 16968058 | ID=Msa0107020-mRNA-1:cds;Parent=Msa0107020-mRNA-1 |
| chr1_3 | CDS | 16968212 | 16968689 | 16968212 | ID=Msa0107020-mRNA-1:cds;Parent=Msa0107020-mRNA-1 |
| chr1_3 | CDS | 16969028 | 16969146 | 16969028 | ID=Msa0107020-mRNA-1:cds;Parent=Msa0107020-mRNA-1 |
| chr1_3 | CDS | 16969221 | 16969494 | 16969221 | ID=Msa0107020-mRNA-1:cds;Parent=Msa0107020-mRNA-1 |
| chr1_3 | CDS | 16969597 | 16969683 | 16969597 | ID=Msa0107020-mRNA-1:cds;Parent=Msa0107020-mRNA-1 |
| chr1_3 | CDS | 16970084 | 16970142 | 16970084 | ID=Msa0107020-mRNA-1:cds;Parent=Msa0107020-mRNA-1 |
| chr1_3 | CDS | 16970342 | 16970590 | 16970342 | ID=Msa0107020-mRNA-1:cds;Parent=Msa0107020-mRNA-1 |
| chr1_3 | three_prime_UTR | 16970591 | 16970826 | 16970591 | ID=Msa0107020-mRNA-1:three_prime_utr;Parent=Msa0107020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
