AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0730460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0730460 MtrunA17_Chr5g0423841 98.274 927 14 2 1 926 1 926 0.0 1885
Msa0730460 MtrunA17_Chr1g0209901 80.377 902 171 3 26 926 28 924 0.0 1542
Msa0730460 MtrunA17_Chr1g0209911 75.719 939 213 5 1 926 1 937 0.0 1488
Msa0730460 MtrunA17_Chr2g0293101 46.559 930 451 15 7 925 17 911 0.0 842
Msa0730460 MtrunA17_Chr2g0293111 46.162 925 451 15 7 919 17 906 0.0 832
Msa0730460 MtrunA17_Chr3g0130691 29.722 720 381 20 188 859 217 859 6.88e-84 289
Msa0730460 MtrunA17_Chr5g0409111 30.628 653 363 20 178 816 144 720 1.45e-75 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0730460 AT1G68560.1 75.812 893 205 4 35 926 31 913 0.0 1447
Msa0730460 AT3G45940.1 64.744 919 252 9 11 926 4 853 0.0 1228
Msa0730460 AT5G11720.1 45.356 926 456 15 15 925 11 901 0.0 814
Msa0730460 AT5G63840.1 29.506 749 419 18 148 859 189 865 9.16e-88 300
Msa0730460 AT5G63840.2 29.506 749 419 18 148 859 216 892 1.32e-87 301
Msa0730460 AT3G23640.2 34.526 559 276 17 271 818 169 648 8.16e-85 293
Msa0730460 AT3G23640.1 34.526 559 276 17 271 818 169 648 8.16e-85 293
Msa0730460 AT3G23640.3 34.526 559 276 17 271 818 238 717 1.01e-84 295

Find 253 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGACATCATTGATATTT+TGG 0.095970 5_1:-39790963 None:intergenic
ACGATAGCCTTGACCAATTT+TGG 0.159411 5_1:-39785378 None:intergenic
AATCTTAATGCTGATTTATA+TGG 0.165923 5_1:+39786217 Msa0730460:CDS
CTTTGCCATGACATGGAAAA+TGG 0.172380 5_1:+39790705 Msa0730460:CDS
CCGTTTCCAAGCTTCATTTC+TGG 0.183467 5_1:-39790379 None:intergenic
AATATGCGCTTCGTAGTTTA+AGG 0.189232 5_1:-39789954 None:intergenic
AAGGAACATGGGAGAATTTA+AGG 0.193751 5_1:+39789678 Msa0730460:CDS
ACCCCTGATGGTGCCCTTAT+TGG 0.202977 5_1:+39785419 Msa0730460:CDS
TTTGCATGATCTCTTGAAAA+TGG 0.216652 5_1:-39789830 None:intergenic
TCTTTGACTTATAAGGTTAT+TGG 0.219457 5_1:+39786346 Msa0730460:CDS
CCTAAAGATGCATCTTTATA+TGG 0.220928 5_1:+39786109 Msa0730460:CDS
AATATCAGGGCCATAGATTT+TGG 0.228691 5_1:-39785465 None:intergenic
TTCTTGGCTCAAGTGTGGCC+TGG 0.233420 5_1:+39789176 Msa0730460:CDS
ATGTTGAATTTCGGTATATT+TGG 0.235345 5_1:+39789716 Msa0730460:CDS
AGGAACTTCTTTGACTTATA+AGG 0.239990 5_1:+39786339 Msa0730460:CDS
CACGCTCGTTGTTGCATTCC+CGG 0.244601 5_1:+39790300 Msa0730460:CDS
TCAGTTGTATATAAAGTATA+AGG 0.253421 5_1:-39786181 None:intergenic
GCTATGCCTTATTGGGCTTT+TGG 0.262409 5_1:+39786454 Msa0730460:CDS
GACCTGCTGCTATGCCTTAT+TGG 0.263069 5_1:+39786446 Msa0730460:CDS
TTTGGACATATCGTGTTCTT+TGG 0.265426 5_1:-39789347 None:intergenic
TCCTCAAAGGCCACCAAAAT+TGG 0.270256 5_1:+39785365 Msa0730460:CDS
CTGAAGAACTTTGCAATAGA+TGG 0.274848 5_1:+39789786 Msa0730460:CDS
CAACTCATTTGTTGTTGTCT+TGG 0.282188 5_1:-39790788 None:intergenic
ACCTGCTGCTATGCCTTATT+GGG 0.284459 5_1:+39786447 Msa0730460:CDS
TCTTGGCTCAAGTGTGGCCT+GGG 0.284572 5_1:+39789177 Msa0730460:CDS
TTGAAAACAAGTGAACTAAA+TGG 0.291574 5_1:-39786055 None:intergenic
AATGGTGGTGGTTGTTCTCT+TGG 0.296023 5_1:-39785872 None:intergenic
AGATGCATCTTTATATGGTT+TGG 0.300835 5_1:+39786114 Msa0730460:CDS
AACCTAAGAAGGGGAATATC+AGG 0.302044 5_1:-39785479 None:intergenic
TTAGATGGAAAGCCACTAAT+TGG 0.303561 5_1:+39790565 Msa0730460:CDS
ATTGGTAAAGCTCTTGTCTT+GGG 0.307685 5_1:-39789862 None:intergenic
GTATGAAGGTGAACCTTTCT+TGG 0.309484 5_1:+39789160 Msa0730460:CDS
ACCCACCAAGATACCGTCTT+TGG 0.312992 5_1:-39789227 None:intergenic
TTTCCTAAGGTTTGTGGTAA+TGG 0.313549 5_1:-39785890 None:intergenic
CGAGAAATGCTTTAGGTATA+AGG 0.316214 5_1:+39789906 Msa0730460:CDS
TGGATCTCATCCTATGTATA+TGG 0.322901 5_1:+39786237 Msa0730460:CDS
GTGGTTGTTCTCTTGGGATA+AGG 0.326394 5_1:-39785865 None:intergenic
ATTGATTCCATTTCTGTGTT+GGG 0.332469 5_1:+39790505 Msa0730460:CDS
AGATAGTAATTTGCTTAGAT+TGG 0.332650 5_1:+39785169 None:intergenic
CCTTACAAGATAAACGCTTC+TGG 0.335424 5_1:+39789440 Msa0730460:CDS
GATGCATCTTTATATGGTTT+GGG 0.338606 5_1:+39786115 Msa0730460:CDS
GCCCTGATATTCCCCTTCTT+AGG 0.339169 5_1:+39785477 Msa0730460:CDS
TTTGGACGAGGGTAGTTCTT+TGG 0.339509 5_1:-39789008 None:intergenic
AACAAGGAGGTGTGAAAGTT+TGG 0.339571 5_1:+39790437 Msa0730460:CDS
TTCAAGAAGTTCAGAAGCTT+TGG 0.339947 5_1:-39789026 None:intergenic
CATCCTGGTCCTGTTCCATT+TGG 0.345366 5_1:-39789365 None:intergenic
CCATATAAAGATGCATCTTT+AGG 0.345622 5_1:-39786109 None:intergenic
ATTTCTGTGTTGGGATTAGA+TGG 0.346671 5_1:+39790514 Msa0730460:CDS
CCAGAAGCGTTTATCTTGTA+AGG 0.347793 5_1:-39789440 None:intergenic
GATCAGTATACTACTTTGAT+TGG 0.350998 5_1:+39786421 Msa0730460:CDS
ATATCCACAATGTTGAATTT+CGG 0.352326 5_1:+39789707 Msa0730460:CDS
GTGGACCGCGACAAAATAAA+AGG 0.354551 5_1:-39789608 None:intergenic
GCAACTCACAAGGGTCTTCT+TGG 0.356281 5_1:+39789569 Msa0730460:CDS
GAATACTCTGAGACTTCTAT+AGG 0.357463 5_1:-39785926 None:intergenic
AACCAGAAAACCAAAATCTA+TGG 0.362540 5_1:+39785455 Msa0730460:CDS
AGGATCGTCCCATCTTGTTT+TGG 0.363147 5_1:-39789417 None:intergenic
TACTTCTGAACATGTGCATT+TGG 0.366445 5_1:+39790609 Msa0730460:CDS
CGGTCCACTTATGTTGGTTC+GGG 0.366968 5_1:+39789623 Msa0730460:CDS
GTCTTTGGATTGAGAAAATC+AGG 0.367465 5_1:-39789212 None:intergenic
GAAGCCTCAAATTTCTGTTC+TGG 0.368564 5_1:+39789311 Msa0730460:CDS
TATGATGCTCATAGTATCTA+TGG 0.368905 5_1:+39789530 Msa0730460:CDS
CCTTTGGTATACACCATAAC+TGG 0.369803 5_1:-39789111 None:intergenic
TTGTTGAAATCTCAAGATAT+TGG 0.372770 5_1:-39786081 None:intergenic
GTGGCTTCACTTGAGTTAGA+TGG 0.373357 5_1:+39790550 Msa0730460:CDS
TAAGTTGAAGGAGACCAATA+AGG 0.376052 5_1:-39785433 None:intergenic
ATCATACCAAAAGCCCAATA+AGG 0.377929 5_1:-39786460 None:intergenic
AACTACGAAGCGCATATTAC+TGG 0.381260 5_1:+39789959 Msa0730460:CDS
ATAGAAGTCTCAGAGTATTC+AGG 0.384713 5_1:+39785929 Msa0730460:CDS
GATATCCCCATCTGCATTGA+TGG 0.387246 5_1:-39788869 None:intergenic
GGGTAGTGTCAGGGTAGATA+TGG 0.389879 5_1:-39785213 None:intergenic
CTGTTATGTGTACTCTTAAA+CGG 0.393847 5_1:-39785808 None:intergenic
GCGGTCCACTTATGTTGGTT+CGG 0.394005 5_1:+39789622 Msa0730460:CDS
GTCATTATTGACCCTGGAAT+TGG 0.397156 5_1:+39789080 Msa0730460:CDS
ATGGTGGTGGTTGTTCTCTT+GGG 0.398455 5_1:-39785871 None:intergenic
ACACTTGACAAGCCAATTAG+TGG 0.400133 5_1:-39790577 None:intergenic
ATCAATCCACCTTGCTGCAT+TGG 0.404465 5_1:-39790250 None:intergenic
TAGTTTAAGGTGTAAAGATA+TGG 0.405653 5_1:-39789941 None:intergenic
AGTTGAAGTTGAGTTGAAAA+GGG 0.409807 5_1:-39786023 None:intergenic
AAGTTGAAGTTGAGTTGAAA+AGG 0.411882 5_1:-39786024 None:intergenic
CAATCTGCGAGAAATGCTTT+AGG 0.413095 5_1:+39789899 Msa0730460:CDS
AAGGGTCTTCTTGGACTTGA+AGG 0.413515 5_1:+39789578 Msa0730460:CDS
AAATTCCGCTCGATGTGATC+TGG 0.413564 5_1:+39788940 Msa0730460:CDS
TCAATCCAAAGACGGTATCT+TGG 0.419549 5_1:+39789222 Msa0730460:CDS
AGGGTAGTTCTTTGGATTCA+AGG 0.420050 5_1:-39789000 None:intergenic
TGGAACTTTCCTAAGGTTTG+TGG 0.421087 5_1:-39785896 None:intergenic
CTCGTTGTTGCATTCCCGGC+TGG 0.421987 5_1:+39790304 Msa0730460:CDS
CAAAGTTCTTCAGTTGGTTG+TGG 0.425327 5_1:-39789776 None:intergenic
CATGAACTCGTACCTGTTGA+CGG 0.426235 5_1:+39789269 Msa0730460:CDS
TAATTTGCTTAGATTGGATC+TGG 0.426845 5_1:+39785175 None:intergenic
TCGTACCTGTTGACGGCCTA+TGG 0.426914 5_1:+39789276 Msa0730460:CDS
AATACTCTGAGACTTCTATA+GGG 0.433114 5_1:-39785925 None:intergenic
TGAGTGAGCAGGGTAGTGTC+AGG 0.434739 5_1:-39785223 None:intergenic
CAGATGCAAACAAGCAAAGA+TGG 0.439003 5_1:+39785828 Msa0730460:CDS
ATCTAATCCCAACACAGAAA+TGG 0.439538 5_1:-39790512 None:intergenic
TATATGGATCTGAGAAATAA+TGG 0.439740 5_1:+39786253 Msa0730460:CDS
TTCTTGGACTTGAAGGCAAA+AGG 0.441950 5_1:+39789585 Msa0730460:CDS
TCTCTTGGGATAAGGTTGTA+TGG 0.443474 5_1:-39785857 None:intergenic
TTGACTTATAAGGTTATTGG+TGG 0.444386 5_1:+39786349 Msa0730460:CDS
CTGGAGTTAACACCAATTCC+AGG 0.446779 5_1:-39789092 None:intergenic
TATTGATTCCATTTCTGTGT+TGG 0.446974 5_1:+39790504 Msa0730460:CDS
GCAAGGTGGATTGATCTCTA+AGG 0.447708 5_1:+39790258 Msa0730460:CDS
AGACCAATAAGGGCACCATC+AGG 0.448219 5_1:-39785422 None:intergenic
ACTCCAAGACACCGTTATAG+TGG 0.450821 5_1:-39789508 None:intergenic
TGAAAACAAGTGAACTAAAT+GGG 0.454745 5_1:-39786054 None:intergenic
AGAGTGAGGAGTGAGTGAGC+AGG 0.458017 5_1:-39785234 None:intergenic
ACCATCAGGGGTTTCTTCAA+TGG 0.458833 5_1:-39785408 None:intergenic
TTGCATGATCTCTTGAAAAT+GGG 0.465416 5_1:-39789829 None:intergenic
ACCAGGATGGATATGTTGCT+TGG 0.465580 5_1:+39789379 Msa0730460:CDS
GAGTGAGGAGTGAGTGAGCA+GGG 0.466189 5_1:-39785233 None:intergenic
CATTGTTTCCTCCCGGTAGT+TGG 0.466389 5_1:+39790116 Msa0730460:CDS
CATCGTTGGCTAAACCCCTT+TGG 0.466924 5_1:-39789127 None:intergenic
AGAGCTTTACCAATGGGATT+CGG 0.470710 5_1:+39789871 Msa0730460:CDS
GTTGGTACAGTTTACTCGAT+TGG 0.473073 5_1:+39790134 Msa0730460:CDS
CTGGAACGACGATGATCATA+TGG 0.474710 5_1:+39788959 Msa0730460:CDS
ACTCACACCATCACATCAAC+AGG 0.478651 5_1:+39790157 Msa0730460:CDS
TCAATCCATAGGCCGTCAAC+AGG 0.479710 5_1:-39789281 None:intergenic
CGGTATATTTGGTGTTCCAA+TGG 0.480390 5_1:+39789727 Msa0730460:CDS
AAAGTTCTTCAGTTGGTTGT+GGG 0.482195 5_1:-39789775 None:intergenic
TCAGGAAAGTTTACCGCCCC+AGG 0.483976 5_1:-39789194 None:intergenic
ATATTTGGTGTTCCAATGGT+TGG 0.485273 5_1:+39789731 Msa0730460:CDS
ACGATATGTCCAAATGGAAC+AGG 0.485380 5_1:+39789356 Msa0730460:CDS
TTTACCAGAACAGAAATTTG+AGG 0.488269 5_1:-39789315 None:intergenic
TCTCCTTCTGATGCACCAGC+CGG 0.490316 5_1:-39790319 None:intergenic
ATTGGTGTTAACTCCAGTTA+TGG 0.492063 5_1:+39789098 Msa0730460:CDS
CATTGGTAAAGCTCTTGTCT+TGG 0.492147 5_1:-39789863 None:intergenic
GATAAGAAAATAATTATGTT+CGG 0.494745 5_1:-39791039 None:intergenic
CTTCAGATGAAAATAGAAGA+AGG 0.497979 5_1:-39785334 None:intergenic
TTTCTCAGATCCATATACAT+AGG 0.497998 5_1:-39786247 None:intergenic
CAGTTATGGTGTATACCAAA+GGG 0.499204 5_1:+39789112 Msa0730460:CDS
GGTAAATTTGCTTTAGACAA+AGG 0.501257 5_1:+39790475 Msa0730460:CDS
CATCAGAAGGAGATGCTAAA+GGG 0.503388 5_1:+39790329 Msa0730460:CDS
AAGAAAAGTGGTCTTGCAAT+TGG 0.503440 5_1:-39789986 None:intergenic
ACTTAGCATAGAACCTAAGA+AGG 0.505923 5_1:-39785490 None:intergenic
ATACTTGATGAAAACATCGT+TGG 0.508108 5_1:-39789141 None:intergenic
AAGACAAGAGCTTTACCAAT+GGG 0.512360 5_1:+39789865 Msa0730460:CDS
TGCAATAGATGGATTGAAGT+TGG 0.513700 5_1:+39789797 Msa0730460:CDS
GGCTCAAGTGTGGCCTGGGG+CGG 0.516405 5_1:+39789181 Msa0730460:CDS
GAACTTCCAGAAATGAAGCT+TGG 0.516701 5_1:+39790373 Msa0730460:CDS
CAGTTGTATATAAAGTATAA+GGG 0.516738 5_1:-39786180 None:intergenic
CTCCTTCTGATGCACCAGCC+GGG 0.517533 5_1:-39790318 None:intergenic
ACCAATAAGGGCACCATCAG+GGG 0.519110 5_1:-39785420 None:intergenic
AATGGAGTGAAGTGAGAGTG+AGG 0.520116 5_1:-39785248 None:intergenic
ATGGTTGGTTCCGACATATG+TGG 0.520697 5_1:+39789746 Msa0730460:CDS
CCAGAAATGAAGCTTGGAAA+CGG 0.521555 5_1:+39790379 Msa0730460:CDS
CAGGATTCCATCAATGCAGA+TGG 0.521721 5_1:+39788862 Msa0730460:intron
TTGTCGCGGTCCACTTATGT+TGG 0.522950 5_1:+39789617 Msa0730460:CDS
GTTATAGTGGGTTGCACTAG+TGG 0.522996 5_1:-39789495 None:intergenic
TTTGCCATGACATGGAAAAT+GGG 0.523263 5_1:+39790706 Msa0730460:CDS
AACCTTTCTTGGCTCAAGTG+TGG 0.523753 5_1:+39789171 Msa0730460:CDS
ATCCAAAGACGGTATCTTGG+TGG 0.524403 5_1:+39789225 Msa0730460:CDS
TTTGCCCGAACCAACATAAG+TGG 0.526839 5_1:-39789627 None:intergenic
TCAGTCAAAAGAAAATCAAA+TGG 0.527251 5_1:+39785995 Msa0730460:CDS
CATTGGACTGGTGACAATCA+AGG 0.527676 5_1:+39789659 Msa0730460:CDS
GCCCAATAAGGCATAGCAGC+AGG 0.529330 5_1:-39786448 None:intergenic
AAGGTTTGTGGTAATGGTGG+TGG 0.529787 5_1:-39785884 None:intergenic
CCACCATTACCACAAACCTT+AGG 0.531410 5_1:+39785887 Msa0730460:CDS
AAGTTGAAGGAGACCAATAA+GGG 0.534621 5_1:-39785432 None:intergenic
GCATCAGAAGGAGATGCTAA+AGG 0.534788 5_1:+39790328 Msa0730460:CDS
TGTCCAAATGGAACAGGACC+AGG 0.534970 5_1:+39789362 Msa0730460:CDS
TACATTGTCATTATTGACCC+TGG 0.538902 5_1:+39789074 Msa0730460:CDS
CTATTGCAAAGTTCTTCAGT+TGG 0.540147 5_1:-39789782 None:intergenic
AAGAACACGATATGTCCAAA+TGG 0.540149 5_1:+39789350 Msa0730460:CDS
GTTGTTGAATAGTAATGGAA+TGG 0.541632 5_1:+39786303 Msa0730460:CDS
TCCAAGCAACATATCCATCC+TGG 0.543677 5_1:-39789380 None:intergenic
GGCCACACTTGAGCCAAGAA+AGG 0.545802 5_1:-39789173 None:intergenic
AGATGGAAGTGTTGGAGCAG+TGG 0.546659 5_1:+39790531 Msa0730460:CDS
GTGAAAGCATTGTTTCCTCC+CGG 0.547809 5_1:+39790109 Msa0730460:CDS
ATCAGTTGTTGAAGATGTTG+TGG 0.549536 5_1:+39788899 Msa0730460:CDS
AAGACCCTTGTGAGTTGCGA+CGG 0.550455 5_1:-39789564 None:intergenic
GATGGGAAAGTGAAGAAAAG+TGG 0.551252 5_1:-39789998 None:intergenic
GAGTAAACTGTACCAACTAC+CGG 0.552239 5_1:-39790128 None:intergenic
TGGGTAAAATCCACATATGT+CGG 0.552361 5_1:-39789756 None:intergenic
TGGACCAACTCCTTTGAATG+TGG 0.552956 5_1:+39786396 Msa0730460:CDS
AGAACATCACCAAAACAAGA+TGG 0.554704 5_1:+39789408 Msa0730460:CDS
AATGCAACAACGAGCGTGAA+GGG 0.554870 5_1:-39790295 None:intergenic
TTCAGATGAAAATAGAAGAA+GGG 0.555350 5_1:-39785333 None:intergenic
CTGGTGACAATCAAGGAACA+TGG 0.556321 5_1:+39789666 Msa0730460:CDS
ACTAGTGCAACCCACTATAA+CGG 0.556439 5_1:+39789497 Msa0730460:CDS
ATATCTCCGGTGCTCGAACA+AGG 0.557999 5_1:+39790076 Msa0730460:CDS
GACCAATAAGGGCACCATCA+GGG 0.558124 5_1:-39785421 None:intergenic
CCTAAGGTTTGTGGTAATGG+TGG 0.558277 5_1:-39785887 None:intergenic
TGCACATTCACCACATGAAG+AGG 0.558516 5_1:-39790205 None:intergenic
TTCCCGGCTGGTGCATCAGA+AGG 0.558535 5_1:+39790316 Msa0730460:CDS
CATATGTCGGAACCAACCAT+TGG 0.559566 5_1:-39789743 None:intergenic
AAGCAGTCTCATGATATCTC+CGG 0.562483 5_1:+39790063 Msa0730460:CDS
GCAATCCGTCGCAACTCACA+AGG 0.563418 5_1:+39789559 Msa0730460:CDS
TACTGATCAACCACATTCAA+AGG 0.563536 5_1:-39786406 None:intergenic
AGATGCAAACAAGCAAAGAT+GGG 0.564971 5_1:+39785829 Msa0730460:CDS
TCTGGAATACAAGCTCCAAT+CGG 0.565528 5_1:+39789458 Msa0730460:CDS
TCAACCACATTCAAAGGAGT+TGG 0.566294 5_1:-39786400 None:intergenic
TTGGGATTAGATGGAAGTGT+TGG 0.571364 5_1:+39790523 Msa0730460:CDS
AAATATGCTGCACATTGGAC+TGG 0.572533 5_1:+39789647 Msa0730460:CDS
AACAACGAGCGTGAAGGGTG+TGG 0.575238 5_1:-39790290 None:intergenic
AAGTTCAGAAGCTTTGGACG+AGG 0.578339 5_1:-39789020 None:intergenic
AGTTCAGAAGCTTTGGACGA+GGG 0.578588 5_1:-39789019 None:intergenic
CTTCGTTCATGTCAATCCAT+AGG 0.580153 5_1:-39789292 None:intergenic
CCAGTTATGGTGTATACCAA+AGG 0.580821 5_1:+39789111 Msa0730460:CDS
AGGATTCCATCAATGCAGAT+GGG 0.583052 5_1:+39788863 Msa0730460:intron
AACCCACTATAACGGTGTCT+TGG 0.585133 5_1:+39789505 Msa0730460:CDS
TTGGTAAAGCTCTTGTCTTG+GGG 0.587218 5_1:-39789861 None:intergenic
CTTGGCTCAAGTGTGGCCTG+GGG 0.588583 5_1:+39789178 Msa0730460:CDS
GAATGCAACAACGAGCGTGA+AGG 0.592132 5_1:-39790296 None:intergenic
CTTAGCATAGAACCTAAGAA+GGG 0.592875 5_1:-39785489 None:intergenic
TATAAAGTATAAGGGTCACT+TGG 0.594372 5_1:-39786172 None:intergenic
TGAAGCTAGTTCTTCCTCAA+AGG 0.597050 5_1:+39785352 Msa0730460:CDS
TTGAACAAGATACACAGCAT+TGG 0.600111 5_1:+39789044 Msa0730460:CDS
CATTTGGAAGGTGAAGGAAA+TGG 0.600808 5_1:+39790625 Msa0730460:CDS
TCTGAACATGTGCATTTGGA+AGG 0.603305 5_1:+39790613 Msa0730460:CDS
GAACATCACCAAAACAAGAT+GGG 0.603407 5_1:+39789409 Msa0730460:CDS
TCCAAAGACGGTATCTTGGT+GGG 0.603568 5_1:+39789226 Msa0730460:CDS
ACTGTGATGGTAACTTTGAG+AGG 0.604296 5_1:+39790658 Msa0730460:CDS
TGGAGTTAACACCAATTCCA+GGG 0.605234 5_1:-39789091 None:intergenic
CGGGCAAATATGCTGCACAT+TGG 0.606847 5_1:+39789642 Msa0730460:CDS
ACCTAAGAAGGGGAATATCA+GGG 0.608020 5_1:-39785478 None:intergenic
ATTGAGCTACCGAATCCCAT+TGG 0.608425 5_1:-39789880 None:intergenic
TGTTGTGGATAGTTACAAGA+AGG 0.610027 5_1:+39788914 Msa0730460:CDS
TATACCGAAATTCAACATTG+TGG 0.611148 5_1:-39789711 None:intergenic
CTATATGCTAGTGTCAAACA+AGG 0.612842 5_1:+39790421 Msa0730460:CDS
CTCCAAGACACCGTTATAGT+GGG 0.622378 5_1:-39789507 None:intergenic
AAGGCCACCAAAATTGGTCA+AGG 0.623219 5_1:+39785371 Msa0730460:CDS
CAAGACAAGAGCTTTACCAA+TGG 0.624512 5_1:+39789864 Msa0730460:CDS
TATGAATATATATCTCAAAG+TGG 0.625857 5_1:+39790990 Msa0730460:three_prime_UTR
GGATATAATTTAATCCCATG+TGG 0.629764 5_1:-39786151 None:intergenic
GAAGCGTTTATCTTGTAAGG+AGG 0.630030 5_1:-39789437 None:intergenic
AGTTTGGTCAGAAGTTCAAG+AGG 0.635859 5_1:+39790453 Msa0730460:CDS
GAGTGAGCAGGGTAGTGTCA+GGG 0.636107 5_1:-39785222 None:intergenic
AGTTCCGCCTGTTGATGTGA+TGG 0.636334 5_1:-39790164 None:intergenic
ATGGATCTGAGAAATAATGG+TGG 0.637533 5_1:+39786256 Msa0730460:CDS
AGTAAACTGTACCAACTACC+GGG 0.640442 5_1:-39790127 None:intergenic
ACTTGATGCACCTCTTCATG+TGG 0.643407 5_1:+39790195 Msa0730460:CDS
AGAGGGTTGAGCATTCCTGT+TGG 0.649091 5_1:+39790676 Msa0730460:CDS
GTTTGGTCAGAAGTTCAAGA+GGG 0.655783 5_1:+39790454 Msa0730460:CDS
ACAATTCTTCCAATGCAGCA+AGG 0.659787 5_1:+39790241 Msa0730460:CDS
CAATCCGTCGCAACTCACAA+GGG 0.662202 5_1:+39789560 Msa0730460:CDS
TGGTGACAATCAAGGAACAT+GGG 0.663893 5_1:+39789667 Msa0730460:CDS
TTAGCATAGAACCTAAGAAG+GGG 0.663933 5_1:-39785488 None:intergenic
ATTCTTCCAATGCAGCAAGG+TGG 0.666214 5_1:+39790244 Msa0730460:CDS
AACGACGATGATCATATGGA+CGG 0.669594 5_1:+39788963 Msa0730460:CDS
CAAATGGAACAGGACCAGGA+TGG 0.669712 5_1:+39789366 Msa0730460:CDS
GGAGAGAATACACAACCACA+TGG 0.676026 5_1:+39786136 Msa0730460:CDS
CATAGAAATGCTAAACTGTG+AGG 0.677071 5_1:-39785290 None:intergenic
AGTTATGGTGTATACCAAAG+GGG 0.677346 5_1:+39789113 Msa0730460:CDS
CTGTGATGGTAACTTTGAGA+GGG 0.681039 5_1:+39790659 Msa0730460:CDS
TGGTGAAAGTAAGACTGTGA+TGG 0.681480 5_1:+39790645 Msa0730460:CDS
TCGTTCCAGATCACATCGAG+CGG 0.689132 5_1:-39788945 None:intergenic
GTACGAGTTCATGAAAGCGA+CGG 0.689303 5_1:-39789259 None:intergenic
CACACCATCACATCAACAGG+CGG 0.689960 5_1:+39790160 Msa0730460:CDS
GGATTCCATCAATGCAGATG+GGG 0.692287 5_1:+39788864 Msa0730460:intron
TCCATTGAAGAAACCCCTGA+TGG 0.700898 5_1:+39785407 Msa0730460:CDS
GAGAGAATACACAACCACAT+GGG 0.709781 5_1:+39786137 Msa0730460:CDS
CATGTGCATTTGGAAGGTGA+AGG 0.717327 5_1:+39790619 Msa0730460:CDS
TATGCTAGTGTCAAACAAGG+AGG 0.726500 5_1:+39790424 Msa0730460:CDS
AAACTGTACCAACTACCGGG+AGG 0.768178 5_1:-39790124 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAATTGAAAATATTGA+TGG + chr5_1:39788271-39788290 Msa0730460:intron 10.0%
!!! TTTACTTAATTTATCTATTT+TGG + chr5_1:39788389-39788408 Msa0730460:intron 10.0%
!! AATCTAACAATTAACAAAAA+GGG - chr5_1:39786595-39786614 None:intergenic 15.0%
!! TAATCTAACAATTAACAAAA+AGG - chr5_1:39786596-39786615 None:intergenic 15.0%
!! TTAATTGTTAGATTAAAAGA+AGG + chr5_1:39786601-39786620 Msa0730460:intron 15.0%
!! ATTTACTATCATATATTACT+TGG - chr5_1:39786954-39786973 None:intergenic 15.0%
!!! ACAAATTTAGAATAAAAAAG+AGG - chr5_1:39786987-39787006 None:intergenic 15.0%
!! TAAAAACAAAATATCAATCA+TGG + chr5_1:39787119-39787138 Msa0730460:intron 15.0%
!! AAATGTTAAAAATGATATCA+CGG - chr5_1:39787191-39787210 None:intergenic 15.0%
!!! ATATCATTTTTAACATTTTG+TGG + chr5_1:39787193-39787212 Msa0730460:intron 15.0%
!! ACTCTATTAATATTTCAAAA+TGG - chr5_1:39787472-39787491 None:intergenic 15.0%
!!! TTTTGAAATATTAATAGAGT+CGG + chr5_1:39787687-39787706 Msa0730460:intron 15.0%
!! GTATTGTTAATAAGAATATA+AGG - chr5_1:39788344-39788363 None:intergenic 15.0%
!! ATTTGTCAATTATAAGAAAA+AGG + chr5_1:39788725-39788744 Msa0730460:intron 15.0%
!!! AAGAACTAAATGTGTTTTTT+AGG - chr5_1:39785520-39785539 None:intergenic 20.0%
!!! TTTTCACATTATTATCAGTA+TGG - chr5_1:39785629-39785648 None:intergenic 20.0%
!! CAGTTGTATATAAAGTATAA+GGG - chr5_1:39786183-39786202 None:intergenic 20.0%
!! TCAGTTGTATATAAAGTATA+AGG - chr5_1:39786184-39786203 None:intergenic 20.0%
!!! AATCTTAATGCTGATTTATA+TGG + chr5_1:39786217-39786236 Msa0730460:CDS 20.0%
!! AATGCTTAAATGATAAACTT+TGG + chr5_1:39786667-39786686 Msa0730460:intron 20.0%
!!! AAGTTTGTTCTGTATTTTTT+AGG + chr5_1:39787151-39787170 Msa0730460:intron 20.0%
!!! TATTTTTTAGGATTCATGTA+AGG + chr5_1:39787163-39787182 Msa0730460:intron 20.0%
!! TGATTTACTCATTAATATAC+AGG - chr5_1:39787406-39787425 None:intergenic 20.0%
!! TAATGAGTAAATCATCAATT+TGG + chr5_1:39787412-39787431 Msa0730460:intron 20.0%
!!! AGAAATTTTTGACAAATTCA+TGG + chr5_1:39787566-39787585 Msa0730460:intron 20.0%
!!! TTTGAAATATTAATAGAGTC+GGG + chr5_1:39787688-39787707 Msa0730460:intron 20.0%
!!! GATTCTTCTTTTATAAAGTT+TGG + chr5_1:39787751-39787770 Msa0730460:intron 20.0%
!!! TAGGTAATTGAATACTTTTT+TGG + chr5_1:39787863-39787882 Msa0730460:intron 20.0%
!! ATAAAGTTACAGAAAATCTA+AGG - chr5_1:39788682-39788701 None:intergenic 20.0%
!!! TGTTTCTTTTCAATTTTAAC+AGG + chr5_1:39790765-39790784 Msa0730460:three_prime_UTR 20.0%
!!! AAATATGAATGTTGTTTTCT+AGG + chr5_1:39790825-39790844 Msa0730460:three_prime_UTR 20.0%
!!! TGCTTTTATTATGTGAAAAT+TGG - chr5_1:39790913-39790932 None:intergenic 20.0%
!!! TAATGACATCATTGATATTT+TGG - chr5_1:39790966-39790985 None:intergenic 20.0%
!! TATGAATATATATCTCAAAG+TGG + chr5_1:39790990-39791009 Msa0730460:three_prime_UTR 20.0%
! TTCAGATGAAAATAGAAGAA+GGG - chr5_1:39785336-39785355 None:intergenic 25.0%
! TAATGTAATCTAACATGTCA+TGG + chr5_1:39785661-39785680 Msa0730460:intron 25.0%
!!! TTTTGACTGAGAAACTAAAT+GGG - chr5_1:39785985-39786004 None:intergenic 25.0%
! TCAGTCAAAAGAAAATCAAA+TGG + chr5_1:39785995-39786014 Msa0730460:CDS 25.0%
! TGAAAACAAGTGAACTAAAT+GGG - chr5_1:39786057-39786076 None:intergenic 25.0%
! TTGAAAACAAGTGAACTAAA+TGG - chr5_1:39786058-39786077 None:intergenic 25.0%
! TTGTTGAAATCTCAAGATAT+TGG - chr5_1:39786084-39786103 None:intergenic 25.0%
! TATATGGATCTGAGAAATAA+TGG + chr5_1:39786253-39786272 Msa0730460:CDS 25.0%
!!! GTTTTGTTGTTGAATAGTAA+TGG + chr5_1:39786298-39786317 Msa0730460:CDS 25.0%
!! TCTTTGACTTATAAGGTTAT+TGG + chr5_1:39786346-39786365 Msa0730460:CDS 25.0%
!!! TTTGATTTTTACTTCTTCTC+TGG + chr5_1:39786376-39786395 Msa0730460:CDS 25.0%
! ATCATTTAAGCATTCACATA+TGG - chr5_1:39786661-39786680 None:intergenic 25.0%
! ATACAATCATAGATCTGAAA+AGG - chr5_1:39787287-39787306 None:intergenic 25.0%
! AAAAAATATCTCTGAGTCAT+TGG - chr5_1:39787379-39787398 None:intergenic 25.0%
!!! AATGACTCAGAGATATTTTT+TGG + chr5_1:39787378-39787397 Msa0730460:intron 25.0%
!! TATGTTTCTGTCAATTGAAT+AGG + chr5_1:39787537-39787556 Msa0730460:intron 25.0%
!! ATGTTTCTGTCAATTGAATA+GGG + chr5_1:39787538-39787557 Msa0730460:intron 25.0%
!! AAGAGTATGTTAATGTATGA+TGG + chr5_1:39787719-39787738 Msa0730460:intron 25.0%
! AGAGTATGTTAATGTATGAT+GGG + chr5_1:39787720-39787739 Msa0730460:intron 25.0%
! ATCATTTCACACACAAAATA+TGG + chr5_1:39787901-39787920 Msa0730460:intron 25.0%
!! AACCTTTTTGCTAAAGTTTT+GGG + chr5_1:39787955-39787974 Msa0730460:intron 25.0%
! ATAGTTGCAACATTTCAAAA+AGG - chr5_1:39787993-39788012 None:intergenic 25.0%
! AACTATAAAGCAATACATGT+GGG + chr5_1:39788007-39788026 Msa0730460:intron 25.0%
! AGTAATAATGAAAAACGTGT+AGG - chr5_1:39788057-39788076 None:intergenic 25.0%
!! AATTTTACCCTTAAACACAA+TGG - chr5_1:39788238-39788257 None:intergenic 25.0%
! CTAACTGATATTCTTACTAT+TGG + chr5_1:39788835-39788854 Msa0730460:intron 25.0%
! TATTCTTACTATTGGTATAC+AGG + chr5_1:39788843-39788862 Msa0730460:intron 25.0%
! ATATCCACAATGTTGAATTT+CGG + chr5_1:39789707-39789726 Msa0730460:CDS 25.0%
! ATGTTGAATTTCGGTATATT+TGG + chr5_1:39789716-39789735 Msa0730460:CDS 25.0%
!! TAGTTTAAGGTGTAAAGATA+TGG - chr5_1:39789944-39789963 None:intergenic 25.0%
TAAACCATAGCTCACAAAAA+TGG - chr5_1:39785269-39785288 None:intergenic 30.0%
CTTCAGATGAAAATAGAAGA+AGG - chr5_1:39785337-39785356 None:intergenic 30.0%
AACCAGAAAACCAAAATCTA+TGG + chr5_1:39785455-39785474 Msa0730460:CDS 30.0%
!!! TTCTTTTTTTGAGATGTGTG+TGG + chr5_1:39785535-39785554 Msa0730460:intron 30.0%
!!! TGTACCTATTTGTTTTTTGC+AGG + chr5_1:39785771-39785790 Msa0730460:intron 30.0%
CTGTTATGTGTACTCTTAAA+CGG - chr5_1:39785811-39785830 None:intergenic 30.0%
!!! GTTTTTTTGGAACTTTCCTA+AGG - chr5_1:39785906-39785925 None:intergenic 30.0%
!!! AGACTTCTATAGGGTTTTTT+TGG - chr5_1:39785919-39785938 None:intergenic 30.0%
!! AATACTCTGAGACTTCTATA+GGG - chr5_1:39785928-39785947 None:intergenic 30.0%
!! CTTTTGACTGAGAAACTAAA+TGG - chr5_1:39785986-39786005 None:intergenic 30.0%
!! AGTTGAAGTTGAGTTGAAAA+GGG - chr5_1:39786026-39786045 None:intergenic 30.0%
!! AAGTTGAAGTTGAGTTGAAA+AGG - chr5_1:39786027-39786046 None:intergenic 30.0%
CCATATAAAGATGCATCTTT+AGG - chr5_1:39786112-39786131 None:intergenic 30.0%
CCTAAAGATGCATCTTTATA+TGG + chr5_1:39786109-39786128 Msa0730460:CDS 30.0%
AGATGCATCTTTATATGGTT+TGG + chr5_1:39786114-39786133 Msa0730460:CDS 30.0%
GATGCATCTTTATATGGTTT+GGG + chr5_1:39786115-39786134 Msa0730460:CDS 30.0%
GGATATAATTTAATCCCATG+TGG - chr5_1:39786154-39786173 None:intergenic 30.0%
TATAAAGTATAAGGGTCACT+TGG - chr5_1:39786175-39786194 None:intergenic 30.0%
TTTCTCAGATCCATATACAT+AGG - chr5_1:39786250-39786269 None:intergenic 30.0%
! GTTGTTGAATAGTAATGGAA+TGG + chr5_1:39786303-39786322 Msa0730460:CDS 30.0%
! GGAATGGATGTGTTTTATAA+AGG + chr5_1:39786319-39786338 Msa0730460:CDS 30.0%
! AGGAACTTCTTTGACTTATA+AGG + chr5_1:39786339-39786358 Msa0730460:CDS 30.0%
TTGACTTATAAGGTTATTGG+TGG + chr5_1:39786349-39786368 Msa0730460:CDS 30.0%
GATCAGTATACTACTTTGAT+TGG + chr5_1:39786421-39786440 Msa0730460:CDS 30.0%
GATGCATTGTGATAAACTAT+TGG + chr5_1:39786740-39786759 Msa0730460:intron 30.0%
TTCTTACATGACCAATGTTA+AGG - chr5_1:39786883-39786902 None:intergenic 30.0%
TCCAAAGATAATTGATCAGT+TGG + chr5_1:39787053-39787072 Msa0730460:intron 30.0%
ACCAACTGATCAATTATCTT+TGG - chr5_1:39787057-39787076 None:intergenic 30.0%
!! ATAATTGATCAGTTGGTAGA+TGG + chr5_1:39787060-39787079 Msa0730460:intron 30.0%
!! TAATTGATCAGTTGGTAGAT+GGG + chr5_1:39787061-39787080 Msa0730460:intron 30.0%
!!! TTAATACGAGAGCATTTTCA+TGG + chr5_1:39787331-39787350 Msa0730460:intron 30.0%
GAGTAAATCATCAATTTGGT+CGG + chr5_1:39787416-39787435 Msa0730460:intron 30.0%
TTCAATTGACAGAAACATAG+AGG - chr5_1:39787536-39787555 None:intergenic 30.0%
GAGTATGTTAATGTATGATG+GGG + chr5_1:39787721-39787740 Msa0730460:intron 30.0%
AGTATGTTAATGTATGATGG+GGG + chr5_1:39787722-39787741 Msa0730460:intron 30.0%
! GATACTATCAAGATCTTTTC+TGG + chr5_1:39787818-39787837 Msa0730460:intron 30.0%
TGAAATGATATCATTCCATG+TGG - chr5_1:39787890-39787909 None:intergenic 30.0%
! CAACCTTTTTGCTAAAGTTT+TGG + chr5_1:39787954-39787973 Msa0730460:intron 30.0%
CAACTATAAAGCAATACATG+TGG + chr5_1:39788006-39788025 Msa0730460:intron 30.0%
! TCTTTCTATTTTGCTACCTA+AGG + chr5_1:39788076-39788095 Msa0730460:intron 30.0%
TAAATATAACCTCTCTCCTT+AGG - chr5_1:39788095-39788114 None:intergenic 30.0%
TTAAAAATCTTCCACATGGT+TGG - chr5_1:39788149-39788168 None:intergenic 30.0%
GACATTAAAAATCTTCCACA+TGG - chr5_1:39788153-39788172 None:intergenic 30.0%
TAAAGATAAGCTTCCTTTGT+TGG + chr5_1:39788176-39788195 Msa0730460:intron 30.0%
ATCAATCAATCACTAAGATG+TGG + chr5_1:39788211-39788230 Msa0730460:intron 30.0%
! ACAAATACACTGATTACAGT+TGG - chr5_1:39788417-39788436 None:intergenic 30.0%
CAGGATTTGCCTAATTTAAT+GGG + chr5_1:39788521-39788540 Msa0730460:intron 30.0%
AGGATTTGCCTAATTTAATG+GGG + chr5_1:39788522-39788541 Msa0730460:intron 30.0%
CATACAATCAAGTAAACATG+AGG + chr5_1:39788556-39788575 Msa0730460:intron 30.0%
ATCATGCTTCAAATGCAAAA+AGG + chr5_1:39788771-39788790 Msa0730460:intron 30.0%
TCATGCTTCAAATGCAAAAA+GGG + chr5_1:39788772-39788791 Msa0730460:intron 30.0%
! AGTTCTTTTATCAAAGCTTC+AGG - chr5_1:39788800-39788819 None:intergenic 30.0%
ATACTTGATGAAAACATCGT+TGG - chr5_1:39789144-39789163 None:intergenic 30.0%
! GATGTTTTCATCAAGTATGA+AGG + chr5_1:39789146-39789165 Msa0730460:CDS 30.0%
! TGATTTTCTCAATCCAAAGA+CGG + chr5_1:39789214-39789233 Msa0730460:CDS 30.0%
TTTACCAGAACAGAAATTTG+AGG - chr5_1:39789318-39789337 None:intergenic 30.0%
TATGATGCTCATAGTATCTA+TGG + chr5_1:39789530-39789549 Msa0730460:CDS 30.0%
TATACCGAAATTCAACATTG+TGG - chr5_1:39789714-39789733 None:intergenic 30.0%
TTGCATGATCTCTTGAAAAT+GGG - chr5_1:39789832-39789851 None:intergenic 30.0%
TTTGCATGATCTCTTGAAAA+TGG - chr5_1:39789833-39789852 None:intergenic 30.0%
! CGTAACATTTTGTGTAAGAT+GGG - chr5_1:39790018-39790037 None:intergenic 30.0%
! TCGTAACATTTTGTGTAAGA+TGG - chr5_1:39790019-39790038 None:intergenic 30.0%
! GGTAAATTTGCTTTAGACAA+AGG + chr5_1:39790475-39790494 Msa0730460:CDS 30.0%
!! TATTGATTCCATTTCTGTGT+TGG + chr5_1:39790504-39790523 Msa0730460:CDS 30.0%
! ATTGATTCCATTTCTGTGTT+GGG + chr5_1:39790505-39790524 Msa0730460:CDS 30.0%
!!! TGTTTTCTAGGTTTTTAGCT+AGG + chr5_1:39790837-39790856 Msa0730460:three_prime_UTR 30.0%
CATAGAAATGCTAAACTGTG+AGG - chr5_1:39785293-39785312 None:intergenic 35.0%
AAGTTGAAGGAGACCAATAA+GGG - chr5_1:39785435-39785454 None:intergenic 35.0%
! TAAGTTGAAGGAGACCAATA+AGG - chr5_1:39785436-39785455 None:intergenic 35.0%
!!! TGGTTTTCTGGTTAAGTTGA+AGG - chr5_1:39785448-39785467 None:intergenic 35.0%
! AATATCAGGGCCATAGATTT+TGG - chr5_1:39785468-39785487 None:intergenic 35.0%
TTAGCATAGAACCTAAGAAG+GGG - chr5_1:39785491-39785510 None:intergenic 35.0%
CTTAGCATAGAACCTAAGAA+GGG - chr5_1:39785492-39785511 None:intergenic 35.0%
ACTTAGCATAGAACCTAAGA+AGG - chr5_1:39785493-39785512 None:intergenic 35.0%
ATGTCATGGTCGTATCATAT+CGG + chr5_1:39785675-39785694 Msa0730460:intron 35.0%
!! TCAGAAGTGTTAGTACTACA+TGG + chr5_1:39785723-39785742 Msa0730460:intron 35.0%
CATGCCTGCAAAAAACAAAT+AGG - chr5_1:39785778-39785797 None:intergenic 35.0%
AGATGCAAACAAGCAAAGAT+GGG + chr5_1:39785829-39785848 Msa0730460:CDS 35.0%
TTTCCTAAGGTTTGTGGTAA+TGG - chr5_1:39785893-39785912 None:intergenic 35.0%
!! GAATACTCTGAGACTTCTAT+AGG - chr5_1:39785929-39785948 None:intergenic 35.0%
! ATAGAAGTCTCAGAGTATTC+AGG + chr5_1:39785929-39785948 Msa0730460:CDS 35.0%
TGGATCTCATCCTATGTATA+TGG + chr5_1:39786237-39786256 Msa0730460:CDS 35.0%
ATGGATCTGAGAAATAATGG+TGG + chr5_1:39786256-39786275 Msa0730460:CDS 35.0%
TACTGATCAACCACATTCAA+AGG - chr5_1:39786409-39786428 None:intergenic 35.0%
ATCATACCAAAAGCCCAATA+AGG - chr5_1:39786463-39786482 None:intergenic 35.0%
!!! AGAAGCACTTTTGCGAAAAT+TGG + chr5_1:39786629-39786648 Msa0730460:intron 35.0%
!! GAAGCACTTTTGCGAAAATT+GGG + chr5_1:39786630-39786649 Msa0730460:intron 35.0%
! AAGCACTTTTGCGAAAATTG+GGG + chr5_1:39786631-39786650 Msa0730460:intron 35.0%
GCAGCATTTGTGATAAACTA+TGG + chr5_1:39786689-39786708 Msa0730460:intron 35.0%
CCAATGTTAAGGTGTAATGA+TGG - chr5_1:39786872-39786891 None:intergenic 35.0%
CCATCATTACACCTTAACAT+TGG + chr5_1:39786869-39786888 Msa0730460:intron 35.0%
AACCAGTTATTAGTTGTTGC+AGG + chr5_1:39786901-39786920 Msa0730460:intron 35.0%
AACCTGCAACAACTAATAAC+TGG - chr5_1:39786906-39786925 None:intergenic 35.0%
ATATTACTTGGTCTGAACTC+AGG - chr5_1:39786942-39786961 None:intergenic 35.0%
GGAAGTAGTTGAAAGTAAAG+TGG - chr5_1:39787036-39787055 None:intergenic 35.0%
! TTTTTATTATCAGTGCCAGC+GGG - chr5_1:39787105-39787124 None:intergenic 35.0%
! GTTTTTATTATCAGTGCCAG+CGG - chr5_1:39787106-39787125 None:intergenic 35.0%
TCTGAAAAGGTTTGTCTCTT+TGG - chr5_1:39787274-39787293 None:intergenic 35.0%
CTGTCACTGTTTGTTTGATT+TGG + chr5_1:39787796-39787815 Msa0730460:intron 35.0%
TAACACTCAACAACAAAAGC+TGG - chr5_1:39787845-39787864 None:intergenic 35.0%
!!! AGCTTTTGTTGTTGAGTGTT+AGG + chr5_1:39787844-39787863 Msa0730460:intron 35.0%
!!! GAATACTTTTTTGGTCCACA+TGG + chr5_1:39787872-39787891 Msa0730460:intron 35.0%
GACCCAAAACTTTAGCAAAA+AGG - chr5_1:39787960-39787979 None:intergenic 35.0%
TCAGTTAATGTCACCAACAA+AGG - chr5_1:39788192-39788211 None:intergenic 35.0%
ATGTGGTCCATTGTGTTTAA+GGG + chr5_1:39788228-39788247 Msa0730460:intron 35.0%
GCAGGATTTGCCTAATTTAA+TGG + chr5_1:39788520-39788539 Msa0730460:intron 35.0%
GGATTTGCCTAATTTAATGG+GGG + chr5_1:39788523-39788542 Msa0730460:intron 35.0%
TCTTTCTCCCCCATTAAATT+AGG - chr5_1:39788533-39788552 None:intergenic 35.0%
AATTTAATGGGGGAGAAAGA+TGG + chr5_1:39788533-39788552 Msa0730460:intron 35.0%
GCATGATGCATAAGAATCTA+AGG - chr5_1:39788758-39788777 None:intergenic 35.0%
ATCAGTTGTTGAAGATGTTG+TGG + chr5_1:39788899-39788918 Msa0730460:CDS 35.0%
TGTTGTGGATAGTTACAAGA+AGG + chr5_1:39788914-39788933 Msa0730460:CDS 35.0%
TTCAAGAAGTTCAGAAGCTT+TGG - chr5_1:39789029-39789048 None:intergenic 35.0%
TTGAACAAGATACACAGCAT+TGG + chr5_1:39789044-39789063 Msa0730460:CDS 35.0%
TACATTGTCATTATTGACCC+TGG + chr5_1:39789074-39789093 Msa0730460:CDS 35.0%
!! ATTGGTGTTAACTCCAGTTA+TGG + chr5_1:39789098-39789117 Msa0730460:CDS 35.0%
CAGTTATGGTGTATACCAAA+GGG + chr5_1:39789112-39789131 Msa0730460:CDS 35.0%
AGTTATGGTGTATACCAAAG+GGG + chr5_1:39789113-39789132 Msa0730460:CDS 35.0%
GTCTTTGGATTGAGAAAATC+AGG - chr5_1:39789215-39789234 None:intergenic 35.0%
TTTGGACATATCGTGTTCTT+TGG - chr5_1:39789350-39789369 None:intergenic 35.0%
AAGAACACGATATGTCCAAA+TGG + chr5_1:39789350-39789369 Msa0730460:CDS 35.0%
AGAACATCACCAAAACAAGA+TGG + chr5_1:39789408-39789427 Msa0730460:CDS 35.0%
GAACATCACCAAAACAAGAT+GGG + chr5_1:39789409-39789428 Msa0730460:CDS 35.0%
!! GCTATTGTTTTGTATCCGAT+TGG - chr5_1:39789476-39789495 None:intergenic 35.0%
!!! AAAGGCCTTTTATTTTGTCG+CGG + chr5_1:39789603-39789622 Msa0730460:CDS 35.0%
AAGGAACATGGGAGAATTTA+AGG + chr5_1:39789678-39789697 Msa0730460:CDS 35.0%
!! ATATTTGGTGTTCCAATGGT+TGG + chr5_1:39789731-39789750 Msa0730460:CDS 35.0%
TGGGTAAAATCCACATATGT+CGG - chr5_1:39789759-39789778 None:intergenic 35.0%
AAAGTTCTTCAGTTGGTTGT+GGG - chr5_1:39789778-39789797 None:intergenic 35.0%
CTATTGCAAAGTTCTTCAGT+TGG - chr5_1:39789785-39789804 None:intergenic 35.0%
CTGAAGAACTTTGCAATAGA+TGG + chr5_1:39789786-39789805 Msa0730460:CDS 35.0%
!! TGCAATAGATGGATTGAAGT+TGG + chr5_1:39789797-39789816 Msa0730460:CDS 35.0%
ATTGGTAAAGCTCTTGTCTT+GGG - chr5_1:39789865-39789884 None:intergenic 35.0%
AAGACAAGAGCTTTACCAAT+GGG + chr5_1:39789865-39789884 Msa0730460:CDS 35.0%
! CGAGAAATGCTTTAGGTATA+AGG + chr5_1:39789906-39789925 Msa0730460:CDS 35.0%
AATATGCGCTTCGTAGTTTA+AGG - chr5_1:39789957-39789976 None:intergenic 35.0%
! AAGAAAAGTGGTCTTGCAAT+TGG - chr5_1:39789989-39790008 None:intergenic 35.0%
CTATATGCTAGTGTCAAACA+AGG + chr5_1:39790421-39790440 Msa0730460:CDS 35.0%
ATCTAATCCCAACACAGAAA+TGG - chr5_1:39790515-39790534 None:intergenic 35.0%
ATTTCTGTGTTGGGATTAGA+TGG + chr5_1:39790514-39790533 Msa0730460:CDS 35.0%
TTAGATGGAAAGCCACTAAT+TGG + chr5_1:39790565-39790584 Msa0730460:CDS 35.0%
TACTTCTGAACATGTGCATT+TGG + chr5_1:39790609-39790628 Msa0730460:CDS 35.0%
! ATGGCAAAGTTTTTACCAAC+AGG - chr5_1:39790694-39790713 None:intergenic 35.0%
GTAAAAACTTTGCCATGACA+TGG + chr5_1:39790698-39790717 Msa0730460:CDS 35.0%
TTTGCCATGACATGGAAAAT+GGG + chr5_1:39790706-39790725 Msa0730460:CDS 35.0%
!! CAACTCATTTGTTGTTGTCT+TGG - chr5_1:39790791-39790810 None:intergenic 35.0%
!! CACTCCATTTTTGTGAGCTA+TGG + chr5_1:39785262-39785281 Msa0730460:exon 40.0%
! TGAAGCTAGTTCTTCCTCAA+AGG + chr5_1:39785352-39785371 Msa0730460:CDS 40.0%
!! ATAGCCTTGACCAATTTTGG+TGG - chr5_1:39785378-39785397 None:intergenic 40.0%
!! ACGATAGCCTTGACCAATTT+TGG - chr5_1:39785381-39785400 None:intergenic 40.0%
!!! GGCCATAGATTTTGGTTTTC+TGG - chr5_1:39785460-39785479 None:intergenic 40.0%
ACCTAAGAAGGGGAATATCA+GGG - chr5_1:39785481-39785500 None:intergenic 40.0%
AACCTAAGAAGGGGAATATC+AGG - chr5_1:39785482-39785501 None:intergenic 40.0%
GTTGTATCCGACATTAGTGT+CGG - chr5_1:39785596-39785615 None:intergenic 40.0%
CAGATGCAAACAAGCAAAGA+TGG + chr5_1:39785828-39785847 Msa0730460:CDS 40.0%
TCTCTTGGGATAAGGTTGTA+TGG - chr5_1:39785860-39785879 None:intergenic 40.0%
TGGAACTTTCCTAAGGTTTG+TGG - chr5_1:39785899-39785918 None:intergenic 40.0%
GAGAGAATACACAACCACAT+GGG + chr5_1:39786137-39786156 Msa0730460:CDS 40.0%
TCAACCACATTCAAAGGAGT+TGG - chr5_1:39786403-39786422 None:intergenic 40.0%
! TTTTATTATCAGTGCCAGCG+GGG - chr5_1:39787104-39787123 None:intergenic 40.0%
! ATTTTGCTACCTAAGGAGAG+AGG + chr5_1:39788083-39788102 Msa0730460:intron 40.0%
! GTTTTATAGCACCAACCATG+TGG + chr5_1:39788135-39788154 Msa0730460:intron 40.0%
GATGTGGTCCATTGTGTTTA+AGG + chr5_1:39788227-39788246 Msa0730460:intron 40.0%
AGGATTCCATCAATGCAGAT+GGG + chr5_1:39788863-39788882 Msa0730460:intron 40.0%
AACGACGATGATCATATGGA+CGG + chr5_1:39788963-39788982 Msa0730460:CDS 40.0%
AGGGTAGTTCTTTGGATTCA+AGG - chr5_1:39789003-39789022 None:intergenic 40.0%
GTCATTATTGACCCTGGAAT+TGG + chr5_1:39789080-39789099 Msa0730460:CDS 40.0%
TGGAGTTAACACCAATTCCA+GGG - chr5_1:39789094-39789113 None:intergenic 40.0%
CCTTTGGTATACACCATAAC+TGG - chr5_1:39789114-39789133 None:intergenic 40.0%
CCAGTTATGGTGTATACCAA+AGG + chr5_1:39789111-39789130 Msa0730460:CDS 40.0%
GTATGAAGGTGAACCTTTCT+TGG + chr5_1:39789160-39789179 Msa0730460:CDS 40.0%
TCAATCCAAAGACGGTATCT+TGG + chr5_1:39789222-39789241 Msa0730460:CDS 40.0%
CTTCGTTCATGTCAATCCAT+AGG - chr5_1:39789295-39789314 None:intergenic 40.0%
GAAGCCTCAAATTTCTGTTC+TGG + chr5_1:39789311-39789330 Msa0730460:CDS 40.0%
ACGATATGTCCAAATGGAAC+AGG + chr5_1:39789356-39789375 Msa0730460:CDS 40.0%
! GAAGCGTTTATCTTGTAAGG+AGG - chr5_1:39789440-39789459 None:intergenic 40.0%
!! CCAGAAGCGTTTATCTTGTA+AGG - chr5_1:39789443-39789462 None:intergenic 40.0%
CCTTACAAGATAAACGCTTC+TGG + chr5_1:39789440-39789459 Msa0730460:CDS 40.0%
! TCTGGAATACAAGCTCCAAT+CGG + chr5_1:39789458-39789477 Msa0730460:CDS 40.0%
ACTAGTGCAACCCACTATAA+CGG + chr5_1:39789497-39789516 Msa0730460:CDS 40.0%
TTCTTGGACTTGAAGGCAAA+AGG + chr5_1:39789585-39789604 Msa0730460:CDS 40.0%
AAATATGCTGCACATTGGAC+TGG + chr5_1:39789647-39789666 Msa0730460:CDS 40.0%
TGGTGACAATCAAGGAACAT+GGG + chr5_1:39789667-39789686 Msa0730460:CDS 40.0%
!! CGGTATATTTGGTGTTCCAA+TGG + chr5_1:39789727-39789746 Msa0730460:CDS 40.0%
CAAAGTTCTTCAGTTGGTTG+TGG - chr5_1:39789779-39789798 None:intergenic 40.0%
TTGGTAAAGCTCTTGTCTTG+GGG - chr5_1:39789864-39789883 None:intergenic 40.0%
CATTGGTAAAGCTCTTGTCT+TGG - chr5_1:39789866-39789885 None:intergenic 40.0%
CAAGACAAGAGCTTTACCAA+TGG + chr5_1:39789864-39789883 Msa0730460:CDS 40.0%
AGAGCTTTACCAATGGGATT+CGG + chr5_1:39789871-39789890 Msa0730460:CDS 40.0%
CAATCTGCGAGAAATGCTTT+AGG + chr5_1:39789899-39789918 Msa0730460:CDS 40.0%
AACTACGAAGCGCATATTAC+TGG + chr5_1:39789959-39789978 Msa0730460:CDS 40.0%
GATGGGAAAGTGAAGAAAAG+TGG - chr5_1:39790001-39790020 None:intergenic 40.0%
! GTCAGCACTCAGTTTTTACT+CGG + chr5_1:39790040-39790059 Msa0730460:CDS 40.0%
AAGCAGTCTCATGATATCTC+CGG + chr5_1:39790063-39790082 Msa0730460:CDS 40.0%
AGTAAACTGTACCAACTACC+GGG - chr5_1:39790130-39790149 None:intergenic 40.0%
GAGTAAACTGTACCAACTAC+CGG - chr5_1:39790131-39790150 None:intergenic 40.0%
GTTGGTACAGTTTACTCGAT+TGG + chr5_1:39790134-39790153 Msa0730460:CDS 40.0%
ACAATTCTTCCAATGCAGCA+AGG + chr5_1:39790241-39790260 Msa0730460:CDS 40.0%
CATCAGAAGGAGATGCTAAA+GGG + chr5_1:39790329-39790348 Msa0730460:CDS 40.0%
GAACTTCCAGAAATGAAGCT+TGG + chr5_1:39790373-39790392 Msa0730460:CDS 40.0%
CCAGAAATGAAGCTTGGAAA+CGG + chr5_1:39790379-39790398 Msa0730460:CDS 40.0%
TATGCTAGTGTCAAACAAGG+AGG + chr5_1:39790424-39790443 Msa0730460:CDS 40.0%
! AACAAGGAGGTGTGAAAGTT+TGG + chr5_1:39790437-39790456 Msa0730460:CDS 40.0%
AGTTTGGTCAGAAGTTCAAG+AGG + chr5_1:39790453-39790472 Msa0730460:CDS 40.0%
GTTTGGTCAGAAGTTCAAGA+GGG + chr5_1:39790454-39790473 Msa0730460:CDS 40.0%
! TTGGGATTAGATGGAAGTGT+TGG + chr5_1:39790523-39790542 Msa0730460:CDS 40.0%
ACACTTGACAAGCCAATTAG+TGG - chr5_1:39790580-39790599 None:intergenic 40.0%
TCTGAACATGTGCATTTGGA+AGG + chr5_1:39790613-39790632 Msa0730460:CDS 40.0%
CATTTGGAAGGTGAAGGAAA+TGG + chr5_1:39790625-39790644 Msa0730460:CDS 40.0%
TGGTGAAAGTAAGACTGTGA+TGG + chr5_1:39790645-39790664 Msa0730460:CDS 40.0%
ACTGTGATGGTAACTTTGAG+AGG + chr5_1:39790658-39790677 Msa0730460:CDS 40.0%
! CTGTGATGGTAACTTTGAGA+GGG + chr5_1:39790659-39790678 Msa0730460:CDS 40.0%
CTTTGCCATGACATGGAAAA+TGG + chr5_1:39790705-39790724 Msa0730460:CDS 40.0%
! TCATCCCATTTTCCATGTCA+TGG - chr5_1:39790713-39790732 None:intergenic 40.0%
AATGGAGTGAAGTGAGAGTG+AGG - chr5_1:39785251-39785270 None:intergenic 45.0%
TCCTCAAAGGCCACCAAAAT+TGG + chr5_1:39785365-39785384 Msa0730460:CDS 45.0%
!! ACCAATTTTGGTGGCCTTTG+AGG - chr5_1:39785369-39785388 None:intergenic 45.0%
AAGGCCACCAAAATTGGTCA+AGG + chr5_1:39785371-39785390 Msa0730460:CDS 45.0%
TCCATTGAAGAAACCCCTGA+TGG + chr5_1:39785407-39785426 Msa0730460:CDS 45.0%
ACCATCAGGGGTTTCTTCAA+TGG - chr5_1:39785411-39785430 None:intergenic 45.0%
! TGATGCACCGACACTAATGT+CGG + chr5_1:39785586-39785605 Msa0730460:intron 45.0%
TGGTCGTATCATATCGGTGT+TGG + chr5_1:39785681-39785700 Msa0730460:intron 45.0%
GTGGTTGTTCTCTTGGGATA+AGG - chr5_1:39785868-39785887 None:intergenic 45.0%
!! ATGGTGGTGGTTGTTCTCTT+GGG - chr5_1:39785874-39785893 None:intergenic 45.0%
!! AATGGTGGTGGTTGTTCTCT+TGG - chr5_1:39785875-39785894 None:intergenic 45.0%
!! AAGGTTTGTGGTAATGGTGG+TGG - chr5_1:39785887-39785906 None:intergenic 45.0%
!! CCTAAGGTTTGTGGTAATGG+TGG - chr5_1:39785890-39785909 None:intergenic 45.0%
CCACCATTACCACAAACCTT+AGG + chr5_1:39785887-39785906 Msa0730460:CDS 45.0%
GGAGAGAATACACAACCACA+TGG + chr5_1:39786136-39786155 Msa0730460:CDS 45.0%
TGGACCAACTCCTTTGAATG+TGG + chr5_1:39786396-39786415 Msa0730460:CDS 45.0%
! ACCTGCTGCTATGCCTTATT+GGG + chr5_1:39786447-39786466 Msa0730460:CDS 45.0%
!! GCTATGCCTTATTGGGCTTT+TGG + chr5_1:39786454-39786473 Msa0730460:CDS 45.0%
GTTGTTGCAGGTTCGATACT+CGG + chr5_1:39786913-39786932 Msa0730460:intron 45.0%
TCTCCACAGCCTTGATCATT+TGG + chr5_1:39788461-39788480 Msa0730460:intron 45.0%
ACAGCCTTGATCATTTGGAC+CGG + chr5_1:39788466-39788485 Msa0730460:intron 45.0%
CAGGATTCCATCAATGCAGA+TGG + chr5_1:39788862-39788881 Msa0730460:intron 45.0%
GGATTCCATCAATGCAGATG+GGG + chr5_1:39788864-39788883 Msa0730460:intron 45.0%
GATATCCCCATCTGCATTGA+TGG - chr5_1:39788872-39788891 None:intergenic 45.0%
AAATTCCGCTCGATGTGATC+TGG + chr5_1:39788940-39788959 Msa0730460:CDS 45.0%
CTGGAACGACGATGATCATA+TGG + chr5_1:39788959-39788978 Msa0730460:CDS 45.0%
TTTGGACGAGGGTAGTTCTT+TGG - chr5_1:39789011-39789030 None:intergenic 45.0%
!! AGTTCAGAAGCTTTGGACGA+GGG - chr5_1:39789022-39789041 None:intergenic 45.0%
!! AAGTTCAGAAGCTTTGGACG+AGG - chr5_1:39789023-39789042 None:intergenic 45.0%
CTGGAGTTAACACCAATTCC+AGG - chr5_1:39789095-39789114 None:intergenic 45.0%
AACCTTTCTTGGCTCAAGTG+TGG + chr5_1:39789171-39789190 Msa0730460:CDS 45.0%
ATCCAAAGACGGTATCTTGG+TGG + chr5_1:39789225-39789244 Msa0730460:CDS 45.0%
TCCAAAGACGGTATCTTGGT+GGG + chr5_1:39789226-39789245 Msa0730460:CDS 45.0%
GTACGAGTTCATGAAAGCGA+CGG - chr5_1:39789262-39789281 None:intergenic 45.0%
CATGAACTCGTACCTGTTGA+CGG + chr5_1:39789269-39789288 Msa0730460:CDS 45.0%
ACCAGGATGGATATGTTGCT+TGG + chr5_1:39789379-39789398 Msa0730460:CDS 45.0%
TCCAAGCAACATATCCATCC+TGG - chr5_1:39789383-39789402 None:intergenic 45.0%
!! AGGATCGTCCCATCTTGTTT+TGG - chr5_1:39789420-39789439 None:intergenic 45.0%
!! GTTATAGTGGGTTGCACTAG+TGG - chr5_1:39789498-39789517 None:intergenic 45.0%
AACCCACTATAACGGTGTCT+TGG + chr5_1:39789505-39789524 Msa0730460:CDS 45.0%
CTCCAAGACACCGTTATAGT+GGG - chr5_1:39789510-39789529 None:intergenic 45.0%
ACTCCAAGACACCGTTATAG+TGG - chr5_1:39789511-39789530 None:intergenic 45.0%
AAGGGTCTTCTTGGACTTGA+AGG + chr5_1:39789578-39789597 Msa0730460:CDS 45.0%
GTGGACCGCGACAAAATAAA+AGG - chr5_1:39789611-39789630 None:intergenic 45.0%
TTTGCCCGAACCAACATAAG+TGG - chr5_1:39789630-39789649 None:intergenic 45.0%
!! CATTGGACTGGTGACAATCA+AGG + chr5_1:39789659-39789678 Msa0730460:CDS 45.0%
CTGGTGACAATCAAGGAACA+TGG + chr5_1:39789666-39789685 Msa0730460:CDS 45.0%
CATATGTCGGAACCAACCAT+TGG - chr5_1:39789746-39789765 None:intergenic 45.0%
! ATGGTTGGTTCCGACATATG+TGG + chr5_1:39789746-39789765 Msa0730460:CDS 45.0%
ATTGAGCTACCGAATCCCAT+TGG - chr5_1:39789883-39789902 None:intergenic 45.0%
! GTTTTTCCTTGTTCGAGCAC+CGG - chr5_1:39790085-39790104 None:intergenic 45.0%
!! GTGAAAGCATTGTTTCCTCC+CGG + chr5_1:39790109-39790128 Msa0730460:CDS 45.0%
ACTCACACCATCACATCAAC+AGG + chr5_1:39790157-39790176 Msa0730460:CDS 45.0%
ACTTGATGCACCTCTTCATG+TGG + chr5_1:39790195-39790214 Msa0730460:CDS 45.0%
TGCACATTCACCACATGAAG+AGG - chr5_1:39790208-39790227 None:intergenic 45.0%
ATTCTTCCAATGCAGCAAGG+TGG + chr5_1:39790244-39790263 Msa0730460:CDS 45.0%
ATCAATCCACCTTGCTGCAT+TGG - chr5_1:39790253-39790272 None:intergenic 45.0%
!! GCAAGGTGGATTGATCTCTA+AGG + chr5_1:39790258-39790277 Msa0730460:CDS 45.0%
AATGCAACAACGAGCGTGAA+GGG - chr5_1:39790298-39790317 None:intergenic 45.0%
GCATCAGAAGGAGATGCTAA+AGG + chr5_1:39790328-39790347 Msa0730460:CDS 45.0%
CCGTTTCCAAGCTTCATTTC+TGG - chr5_1:39790382-39790401 None:intergenic 45.0%
GTGGCTTCACTTGAGTTAGA+TGG + chr5_1:39790550-39790569 Msa0730460:CDS 45.0%
CATGTGCATTTGGAAGGTGA+AGG + chr5_1:39790619-39790638 Msa0730460:CDS 45.0%
!!! TTTATATTTGATTATATTTT+TGG + chr5_1:39786525-39786544 Msa0730460:intron 5.0%
!! ATTAAAAATTCAATATAAAA+TGG - chr5_1:39786717-39786736 None:intergenic 5.0%
!! ATTTATTTGTATTAAATTAA+AGG - chr5_1:39787010-39787029 None:intergenic 5.0%
!!! GTTTAATATTTTTAAAAAAT+AGG - chr5_1:39787221-39787240 None:intergenic 5.0%
GGGTAGTGTCAGGGTAGATA+TGG - chr5_1:39785216-39785235 None:intergenic 50.0%
!! ACCAATAAGGGCACCATCAG+GGG - chr5_1:39785423-39785442 None:intergenic 50.0%
!! GACCAATAAGGGCACCATCA+GGG - chr5_1:39785424-39785443 None:intergenic 50.0%
!! AGACCAATAAGGGCACCATC+AGG - chr5_1:39785425-39785444 None:intergenic 50.0%
GCCCTGATATTCCCCTTCTT+AGG + chr5_1:39785477-39785496 Msa0730460:CDS 50.0%
GACCTGCTGCTATGCCTTAT+TGG + chr5_1:39786446-39786465 Msa0730460:CDS 50.0%
TTACTCCAACGAGTCCACCA+GGG + chr5_1:39788436-39788455 Msa0730460:intron 50.0%
GGTCCAAATGATCAAGGCTG+TGG - chr5_1:39788467-39788486 None:intergenic 50.0%
ACAGCCGGTCCAAATGATCA+AGG - chr5_1:39788473-39788492 None:intergenic 50.0%
TTGATCATTTGGACCGGCTG+TGG + chr5_1:39788472-39788491 Msa0730460:intron 50.0%
TGATCATTTGGACCGGCTGT+GGG + chr5_1:39788473-39788492 Msa0730460:intron 50.0%
TCGTTCCAGATCACATCGAG+CGG - chr5_1:39788948-39788967 None:intergenic 50.0%
! CATCGTTGGCTAAACCCCTT+TGG - chr5_1:39789130-39789149 None:intergenic 50.0%
ACCCACCAAGATACCGTCTT+TGG - chr5_1:39789230-39789249 None:intergenic 50.0%
TCAATCCATAGGCCGTCAAC+AGG - chr5_1:39789284-39789303 None:intergenic 50.0%
TGTCCAAATGGAACAGGACC+AGG + chr5_1:39789362-39789381 Msa0730460:CDS 50.0%
CATCCTGGTCCTGTTCCATT+TGG - chr5_1:39789368-39789387 None:intergenic 50.0%
CAAATGGAACAGGACCAGGA+TGG + chr5_1:39789366-39789385 Msa0730460:CDS 50.0%
CAATCCGTCGCAACTCACAA+GGG + chr5_1:39789560-39789579 Msa0730460:CDS 50.0%
AAGACCCTTGTGAGTTGCGA+CGG - chr5_1:39789567-39789586 None:intergenic 50.0%
GCAACTCACAAGGGTCTTCT+TGG + chr5_1:39789569-39789588 Msa0730460:CDS 50.0%
TTGTCGCGGTCCACTTATGT+TGG + chr5_1:39789617-39789636 Msa0730460:CDS 50.0%
! GCGGTCCACTTATGTTGGTT+CGG + chr5_1:39789622-39789641 Msa0730460:CDS 50.0%
!! CGGTCCACTTATGTTGGTTC+GGG + chr5_1:39789623-39789642 Msa0730460:CDS 50.0%
CGGGCAAATATGCTGCACAT+TGG + chr5_1:39789642-39789661 Msa0730460:CDS 50.0%
ATATCTCCGGTGCTCGAACA+AGG + chr5_1:39790076-39790095 Msa0730460:CDS 50.0%
CATTGTTTCCTCCCGGTAGT+TGG + chr5_1:39790116-39790135 Msa0730460:CDS 50.0%
AAACTGTACCAACTACCGGG+AGG - chr5_1:39790127-39790146 None:intergenic 50.0%
CACACCATCACATCAACAGG+CGG + chr5_1:39790160-39790179 Msa0730460:CDS 50.0%
GAATGCAACAACGAGCGTGA+AGG - chr5_1:39790299-39790318 None:intergenic 50.0%
!! AGATGGAAGTGTTGGAGCAG+TGG + chr5_1:39790531-39790550 Msa0730460:CDS 50.0%
AGAGGGTTGAGCATTCCTGT+TGG + chr5_1:39790676-39790695 Msa0730460:CDS 50.0%
GAGTGAGCAGGGTAGTGTCA+GGG - chr5_1:39785225-39785244 None:intergenic 55.0%
TGAGTGAGCAGGGTAGTGTC+AGG - chr5_1:39785226-39785245 None:intergenic 55.0%
GAGTGAGGAGTGAGTGAGCA+GGG - chr5_1:39785236-39785255 None:intergenic 55.0%
AGAGTGAGGAGTGAGTGAGC+AGG - chr5_1:39785237-39785256 None:intergenic 55.0%
! ACCCCTGATGGTGCCCTTAT+TGG + chr5_1:39785419-39785438 Msa0730460:CDS 55.0%
GCCCAATAAGGCATAGCAGC+AGG - chr5_1:39786451-39786470 None:intergenic 55.0%
TATTATCAGTGCCAGCGGGG+AGG - chr5_1:39787101-39787120 None:intergenic 55.0%
GTTACTCCAACGAGTCCACC+AGG + chr5_1:39788435-39788454 Msa0730460:intron 55.0%
!! AGATACCCTGGTGGACTCGT+TGG - chr5_1:39788444-39788463 None:intergenic 55.0%
TCAAGGCTGTGGAGATACCC+TGG - chr5_1:39788456-39788475 None:intergenic 55.0%
TCCTGCTCAATGAGCCGATC+CGG - chr5_1:39788506-39788525 None:intergenic 55.0%
GGCCACACTTGAGCCAAGAA+AGG - chr5_1:39789176-39789195 None:intergenic 55.0%
TTCTTGGCTCAAGTGTGGCC+TGG + chr5_1:39789176-39789195 Msa0730460:CDS 55.0%
TCTTGGCTCAAGTGTGGCCT+GGG + chr5_1:39789177-39789196 Msa0730460:CDS 55.0%
TCAGGAAAGTTTACCGCCCC+AGG - chr5_1:39789197-39789216 None:intergenic 55.0%
TCGTACCTGTTGACGGCCTA+TGG + chr5_1:39789276-39789295 Msa0730460:CDS 55.0%
GCAATCCGTCGCAACTCACA+AGG + chr5_1:39789559-39789578 Msa0730460:CDS 55.0%
AACAACGAGCGTGAAGGGTG+TGG - chr5_1:39790293-39790312 None:intergenic 55.0%
CACGCTCGTTGTTGCATTCC+CGG + chr5_1:39790300-39790319 Msa0730460:CDS 55.0%
TCTCCTTCTGATGCACCAGC+CGG - chr5_1:39790322-39790341 None:intergenic 55.0%
ATTAGTGTCCACCTCCCCGC+TGG + chr5_1:39787087-39787106 Msa0730460:intron 60.0%
AGGCTGTGGAGATACCCTGG+TGG - chr5_1:39788453-39788472 None:intergenic 60.0%
CTGTGGGACTAACCCCGGAT+CGG + chr5_1:39788489-39788508 Msa0730460:intron 60.0%
CTGCTCAATGAGCCGATCCG+GGG - chr5_1:39788504-39788523 None:intergenic 60.0%
CCTGCTCAATGAGCCGATCC+GGG - chr5_1:39788505-39788524 None:intergenic 60.0%
CTTGGCTCAAGTGTGGCCTG+GGG + chr5_1:39789178-39789197 Msa0730460:CDS 60.0%
CTCGTTGTTGCATTCCCGGC+TGG + chr5_1:39790304-39790323 Msa0730460:CDS 60.0%
TTCCCGGCTGGTGCATCAGA+AGG + chr5_1:39790316-39790335 Msa0730460:CDS 60.0%
CTCCTTCTGATGCACCAGCC+GGG - chr5_1:39790321-39790340 None:intergenic 60.0%
TATCAGTGCCAGCGGGGAGG+TGG - chr5_1:39787098-39787117 None:intergenic 65.0%
ACCGGCTGTGGGACTAACCC+CGG + chr5_1:39788484-39788503 Msa0730460:intron 65.0%
!! TCCGGGGTTAGTCCCACAGC+CGG - chr5_1:39788488-39788507 None:intergenic 65.0%
! CCCGGATCGGCTCATTGAGC+AGG + chr5_1:39788502-39788521 Msa0730460:intron 65.0%
GGCTCAAGTGTGGCCTGGGG+CGG + chr5_1:39789181-39789200 Msa0730460:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 39785184 39791058 39785184 ID=Msa0730460;Name=Msa0730460
chr5_1 mRNA 39785184 39791058 39785184 ID=Msa0730460-mRNA-1;Parent=Msa0730460;Name=Msa0730460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=97|1|1|1|1|1|3|326|926
chr5_1 exon 39785184 39785510 39785184 ID=Msa0730460-mRNA-1:exon:11685;Parent=Msa0730460-mRNA-1
chr5_1 exon 39785793 39786475 39785793 ID=Msa0730460-mRNA-1:exon:11686;Parent=Msa0730460-mRNA-1
chr5_1 exon 39788865 39791058 39788865 ID=Msa0730460-mRNA-1:exon:11687;Parent=Msa0730460-mRNA-1
chr5_1 five_prime_UTR 39785184 39785280 39785184 ID=Msa0730460-mRNA-1:five_prime_utr;Parent=Msa0730460-mRNA-1
chr5_1 CDS 39785281 39785510 39785281 ID=Msa0730460-mRNA-1:cds;Parent=Msa0730460-mRNA-1
chr5_1 CDS 39785793 39786475 39785793 ID=Msa0730460-mRNA-1:cds;Parent=Msa0730460-mRNA-1
chr5_1 CDS 39788865 39790732 39788865 ID=Msa0730460-mRNA-1:cds;Parent=Msa0730460-mRNA-1
chr5_1 three_prime_UTR 39790733 39791058 39790733 ID=Msa0730460-mRNA-1:three_prime_utr;Parent=Msa0730460-mRNA-1
Gene Sequence

>Msa0730460

ATGGTTTATCCTCACAGTTTAGCATTTCTATGCTTCTCAACTTTTCTTCTAACCCTTCTTCTATTTTCATCTGAAGCTAGTTCTTCCTCAAAGGCCACCAAAATTGGTCAAGGCTATCGTCTTGTATCCATTGAAGAAACCCCTGATGGTGCCCTTATTGGTCTCCTTCAACTTAACCAGAAAACCAAAATCTATGGCCCTGATATTCCCCTTCTTAGGTTCTATGCTAAGCATGAAACAGAGAACCGTTTAAGAGTACACATAACAGATGCAAACAAGCAAAGATGGGAAGTACCATACAACCTTATCCCAAGAGAACAACCACCACCATTACCACAAACCTTAGGAAAGTTCCAAAAAAACCCTATAGAAGTCTCAGAGTATTCAGGCTCAGAGCTTCTATTCAGCTACATTTCAAACCCATTTAGTTTCTCAGTCAAAAGAAAATCAAATGGTGAAACCCTTTTCAACTCAACTTCAACTTCTTCAGACCCATTTAGTTCACTTGTTTTCAAAGACCAATATCTTGAGATTTCAACAAAATTACCTAAAGATGCATCTTTATATGGTTTGGGAGAGAATACACAACCACATGGGATTAAATTATATCCAAGTGACCCTTATACTTTATATACAACTGATATTTCAGCTATTAATCTTAATGCTGATTTATATGGATCTCATCCTATGTATATGGATCTGAGAAATAATGGTGGAAAAGCTTCAGCACATGCTGTTTTGTTGTTGAATAGTAATGGAATGGATGTGTTTTATAAAGGAACTTCTTTGACTTATAAGGTTATTGGTGGTGTTTTTGATTTTTACTTCTTCTCTGGACCAACTCCTTTGAATGTGGTTGATCAGTATACTACTTTGATTGGAAGACCTGCTGCTATGCCTTATTGGGCTTTTGGATTCCATCAATGCAGATGGGGATATCACAATCTATCAGTTGTTGAAGATGTTGTGGATAGTTACAAGAAGGCTCAAATTCCGCTCGATGTGATCTGGAACGACGATGATCATATGGACGGACACAAAGACTTCACCTTGAATCCAAAGAACTACCCTCGTCCAAAGCTTCTGAACTTCTTGAACAAGATACACAGCATTGGCATGAAATACATTGTCATTATTGACCCTGGAATTGGTGTTAACTCCAGTTATGGTGTATACCAAAGGGGTTTAGCCAACGATGTTTTCATCAAGTATGAAGGTGAACCTTTCTTGGCTCAAGTGTGGCCTGGGGCGGTAAACTTTCCTGATTTTCTCAATCCAAAGACGGTATCTTGGTGGGTCGATGAGATCCGTCGCTTTCATGAACTCGTACCTGTTGACGGCCTATGGATTGACATGAACGAAGCCTCAAATTTCTGTTCTGGTAAATGCAAAATTCCAAAGAACACGATATGTCCAAATGGAACAGGACCAGGATGGATATGTTGCTTGGATTGCAAGAACATCACCAAAACAAGATGGGACGATCCTCCTTACAAGATAAACGCTTCTGGAATACAAGCTCCAATCGGATACAAAACAATAGCCACTAGTGCAACCCACTATAACGGTGTCTTGGAGTATGATGCTCATAGTATCTATGGTTTCTCGCAATCCGTCGCAACTCACAAGGGTCTTCTTGGACTTGAAGGCAAAAGGCCTTTTATTTTGTCGCGGTCCACTTATGTTGGTTCGGGCAAATATGCTGCACATTGGACTGGTGACAATCAAGGAACATGGGAGAATTTAAGGTATTCAATATCCACAATGTTGAATTTCGGTATATTTGGTGTTCCAATGGTTGGTTCCGACATATGTGGATTTTACCCACAACCAACTGAAGAACTTTGCAATAGATGGATTGAAGTTGGTGCTTTCTACCCATTTTCAAGAGATCATGCAAACTACTACTCCCCAAGACAAGAGCTTTACCAATGGGATTCGGTAGCTCAATCTGCGAGAAATGCTTTAGGTATAAGGTACAAGATTCTACCATATCTTTACACCTTAAACTACGAAGCGCATATTACTGGATCACCAATTGCAAGACCACTTTTCTTCACTTTCCCATCTTACACAAAATGTTACGACGTCAGCACTCAGTTTTTACTCGGAAGCAGTCTCATGATATCTCCGGTGCTCGAACAAGGAAAAACACAAGTGAAAGCATTGTTTCCTCCCGGTAGTTGGTACAGTTTACTCGATTGGACTCACACCATCACATCAACAGGCGGAACTTATGTTACACTTGATGCACCTCTTCATGTGGTGAATGTGCATTTATATCAGAACACAATTCTTCCAATGCAGCAAGGTGGATTGATCTCTAAGGATGCTCGAACCACACCCTTCACGCTCGTTGTTGCATTCCCGGCTGGTGCATCAGAAGGAGATGCTAAAGGGACACTTTTCATTGACGACGATGAACTTCCAGAAATGAAGCTTGGAAACGGCTATTCGAGTTTTATCGATCTATATGCTAGTGTCAAACAAGGAGGTGTGAAAGTTTGGTCAGAAGTTCAAGAGGGTAAATTTGCTTTAGACAAAGGTTTGATTATTGATTCCATTTCTGTGTTGGGATTAGATGGAAGTGTTGGAGCAGTGGCTTCACTTGAGTTAGATGGAAAGCCACTAATTGGCTTGTCAAGTGTGAATGTTACTACTTCTGAACATGTGCATTTGGAAGGTGAAGGAAATGGTGAAAGTAAGACTGTGATGGTAACTTTGAGAGGGTTGAGCATTCCTGTTGGTAAAAACTTTGCCATGACATGGAAAATGGGATGA
Protein sequence

>Msa0730460

MVYPHSLAFLCFSTFLLTLLLFSSEASSSSKATKIGQGYRLVSIEETPDGALIGLLQLNQKTKIYGPDIPLLRFYAKHETENRLRVHITDANKQRWEVPYNLIPREQPPPLPQTLGKFQKNPIEVSEYSGSELLFSYISNPFSFSVKRKSNGETLFNSTSTSSDPFSSLVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPSDPYTLYTTDISAINLNADLYGSHPMYMDLRNNGGKASAHAVLLLNSNGMDVFYKGTSLTYKVIGGVFDFYFFSGPTPLNVVDQYTTLIGRPAAMPYWAFGFHQCRWGYHNLSVVEDVVDSYKKAQIPLDVIWNDDDHMDGHKDFTLNPKNYPRPKLLNFLNKIHSIGMKYIVIIDPGIGVNSSYGVYQRGLANDVFIKYEGEPFLAQVWPGAVNFPDFLNPKTVSWWVDEIRRFHELVPVDGLWIDMNEASNFCSGKCKIPKNTICPNGTGPGWICCLDCKNITKTRWDDPPYKINASGIQAPIGYKTIATSATHYNGVLEYDAHSIYGFSQSVATHKGLLGLEGKRPFILSRSTYVGSGKYAAHWTGDNQGTWENLRYSISTMLNFGIFGVPMVGSDICGFYPQPTEELCNRWIEVGAFYPFSRDHANYYSPRQELYQWDSVAQSARNALGIRYKILPYLYTLNYEAHITGSPIARPLFFTFPSYTKCYDVSTQFLLGSSLMISPVLEQGKTQVKALFPPGSWYSLLDWTHTITSTGGTYVTLDAPLHVVNVHLYQNTILPMQQGGLISKDARTTPFTLVVAFPAGASEGDAKGTLFIDDDELPEMKLGNGYSSFIDLYASVKQGGVKVWSEVQEGKFALDKGLIIDSISVLGLDGSVGAVASLELDGKPLIGLSSVNVTTSEHVHLEGEGNGESKTVMVTLRGLSIPVGKNFAMTWKMG*