Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687460 | XP_024637313.2 | 97.959 | 392 | 8 | 0 | 1 | 392 | 1 | 392 | 0.0 | 778 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687460 | sp|Q9SLA8|FABI_ARATH | 74.935 | 387 | 96 | 1 | 1 | 386 | 1 | 387 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687460 | A0A396IA11 | 97.959 | 392 | 8 | 0 | 1 | 392 | 1 | 392 | 0.0 | 778 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000330 | Msa0687460 | 0.804997 | 1.651108e-49 | -8.615850e-47 |
| Msa0000560 | Msa0687460 | 0.812283 | 4.583220e-51 | -8.615850e-47 |
| Msa0081070 | Msa0687460 | 0.814784 | 1.291594e-51 | -8.615850e-47 |
| Msa0615640 | Msa0687460 | 0.812388 | 4.348553e-51 | -8.615850e-47 |
| Msa0687460 | Msa0730460 | 0.820898 | 5.378374e-53 | -8.615850e-47 |
| Msa0687460 | Msa1072960 | 0.817782 | 2.758621e-52 | -8.615850e-47 |
| Msa0687460 | Msa1130280 | 0.812539 | 4.030122e-51 | -8.615850e-47 |
| Msa0687460 | Msa1160910 | 0.821482 | 3.944078e-53 | -8.615850e-47 |
| Msa0687460 | Msa1177040 | 0.816486 | 5.395281e-52 | -8.615850e-47 |
| Msa0687460 | Msa1191820 | 0.886061 | 4.746300e-72 | -8.615850e-47 |
| Msa0687460 | Msa1196100 | 0.809317 | 2.008761e-50 | -8.615850e-47 |
| Msa0687460 | Msa1290730 | 0.805547 | 1.266177e-49 | -8.615850e-47 |
| Msa0687460 | Msa1290770 | 0.814526 | 1.473213e-51 | -8.615850e-47 |
| Msa0374240 | Msa0687460 | 0.811277 | 7.588857e-51 | -8.615850e-47 |
| Msa0421180 | Msa0687460 | 0.806908 | 6.546558e-50 | -8.615850e-47 |
| Msa0469800 | Msa0687460 | 0.800534 | 1.378051e-48 | -8.615850e-47 |
| Msa0307280 | Msa0687460 | 0.827953 | 1.176554e-54 | -8.615850e-47 |
| Msa0515360 | Msa0687460 | 0.818473 | 1.924451e-52 | -8.615850e-47 |
| Msa0552710 | Msa0687460 | 0.888140 | 7.686054e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687460 | MtrunA17_Chr4g0038121 | 97.959 | 392 | 8 | 0 | 1 | 392 | 1 | 392 | 0.0 | 778 |
| Msa0687460 | MtrunA17_Chr7g0234681 | 79.337 | 392 | 81 | 0 | 1 | 392 | 1 | 392 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0687460 | AT2G05990.1 | 74.935 | 387 | 96 | 1 | 1 | 386 | 1 | 387 | 0.0 | 583 |
| Msa0687460 | AT2G05990.2 | 74.935 | 387 | 96 | 1 | 1 | 386 | 1 | 387 | 0.0 | 583 |
Find 113 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGCAATGTACAGAATT+TGG | 0.164025 | 4_4:-52307129 | None:intergenic |
| AAATAACCTTTCAAATTAAT+TGG | 0.170444 | 4_4:-52303494 | None:intergenic |
| TTAATTGGCAATCCTGAAAT+TGG | 0.172350 | 4_4:-52303479 | None:intergenic |
| CATTGCCTTTGTCGCAATTT+TGG | 0.179822 | 4_4:-52303435 | None:intergenic |
| ATTACCTGATGGTTCATTAA+TGG | 0.232168 | 4_4:+52304332 | Msa0687460:CDS |
| CATCTATTGCTTACATCTTC+TGG | 0.234437 | 4_4:-52304408 | None:intergenic |
| AGCGAAACAAGTCCAATTTC+AGG | 0.251911 | 4_4:+52303467 | Msa0687460:CDS |
| TTGCAGCAAGATATCCTTTC+CGG | 0.264331 | 4_4:-52305537 | None:intergenic |
| GCTGGAGCTGAAATTCTTCT+TGG | 0.355636 | 4_4:+52303996 | Msa0687460:CDS |
| GGTGCTTAATGCTGCTCCTT+GGG | 0.382381 | 4_4:-52306897 | None:intergenic |
| GAGAATTTAGTAGAAGTTGT+TGG | 0.390383 | 4_4:-52302130 | None:intergenic |
| GCTGCCAAAGTCTTCCTTAA+CGG | 0.394446 | 4_4:-52305367 | None:intergenic |
| TACCTGGACTGTCCATTTGC+TGG | 0.395362 | 4_4:-52304552 | None:intergenic |
| GCAAAATCTCTTGCTGCAGC+TGG | 0.395785 | 4_4:+52303978 | Msa0687460:CDS |
| CTGAAATTCTTCTTGGCACA+TGG | 0.397489 | 4_4:+52304003 | Msa0687460:CDS |
| GGTAAAAGAGCGTTTATTGC+TGG | 0.404119 | 4_4:+52303921 | Msa0687460:intron |
| GAAAGAAATTAATGCCTAGT+AGG | 0.404777 | 4_4:+52307156 | Msa0687460:three_prime_UTR |
| CAGTCCTATATTTAGTGATC+TGG | 0.407629 | 4_4:+52306869 | Msa0687460:CDS |
| GGAAGTGTCGAACAAATGTT+TGG | 0.410324 | 4_4:-52302056 | None:intergenic |
| GATGTGAGCACTGTGGTTCT+TGG | 0.420119 | 4_4:+52303308 | Msa0687460:CDS |
| TTTGCAGCACGACTTCTTAG+TGG | 0.421625 | 4_4:-52306568 | None:intergenic |
| AGAGTTTAATGACTGACAAT+TGG | 0.423983 | 4_4:+52307204 | Msa0687460:three_prime_UTR |
| AAAACAAACAAGCGCTATGC+TGG | 0.427633 | 4_4:+52304527 | Msa0687460:CDS |
| AAATTTCCCACGTCGTAAGC+TGG | 0.427967 | 4_4:-52304210 | None:intergenic |
| AGTCGTGCTGCAAAAGCAAT+TGG | 0.429867 | 4_4:+52306577 | Msa0687460:CDS |
| TGCAGCAAGATATCCTTTCC+GGG | 0.431457 | 4_4:-52305536 | None:intergenic |
| GCTGGTGTGGCTGATGATAA+TGG | 0.434025 | 4_4:+52303939 | Msa0687460:CDS |
| TGGTGCTTAATGCTGCTCCT+TGG | 0.434362 | 4_4:-52306898 | None:intergenic |
| AATTACCAAAGTTTATCCCT+TGG | 0.437748 | 4_4:+52304356 | Msa0687460:CDS |
| ATGTCCAGATCACTAAATAT+AGG | 0.451168 | 4_4:-52306873 | None:intergenic |
| TGCTATATGCTCAGAAGAGC+AGG | 0.451770 | 4_4:+52307035 | Msa0687460:three_prime_UTR |
| GAGACTACACTGTCTAAGTT+GGG | 0.456735 | 4_4:-52306929 | None:intergenic |
| CTCTTTCTGTAGAGGTGCAT+TGG | 0.459409 | 4_4:-52306632 | None:intergenic |
| ATTTCCATTAATGAACCATC+AGG | 0.460508 | 4_4:-52304336 | None:intergenic |
| TACATGCCTGGGTTAATGAT+TGG | 0.462897 | 4_4:-52305607 | None:intergenic |
| TTCATATGTAACAGAGGAGG+TGG | 0.465333 | 4_4:+52306746 | Msa0687460:intron |
| CCACGATCCCACCTTGGACT+TGG | 0.475734 | 4_4:-52303333 | None:intergenic |
| AGTTCACTTGCGCGTGAGAC+GGG | 0.478000 | 4_4:-52302016 | None:intergenic |
| AGCGAAGCAAATACTCTAAG+TGG | 0.478194 | 4_4:-52306951 | None:intergenic |
| GGAAGTTGCTGAATCCGTTA+AGG | 0.478229 | 4_4:+52305353 | Msa0687460:intron |
| TTACGGTACCTCTGGTCCAT+TGG | 0.479765 | 4_4:-52305415 | None:intergenic |
| GGATGTCTCCAGCAGTGGTT+TGG | 0.487037 | 4_4:-52305515 | None:intergenic |
| AGCATCCAAGGGATAAACTT+TGG | 0.487197 | 4_4:-52304361 | None:intergenic |
| GGAGACTACACTGTCTAAGT+TGG | 0.491103 | 4_4:-52306930 | None:intergenic |
| AAAGAAATTAATGCCTAGTA+GGG | 0.491481 | 4_4:+52307157 | Msa0687460:three_prime_UTR |
| GCATCAGAGAGGATCATTCC+TGG | 0.496552 | 4_4:+52306032 | Msa0687460:CDS |
| GTCTAAGTTGGGGTGAGACT+TGG | 0.496858 | 4_4:-52306918 | None:intergenic |
| TGCGTACGAGAGGAAAGCTT+TGG | 0.496861 | 4_4:-52302077 | None:intergenic |
| CTTGTCGTCACCTTTAGCAT+CGG | 0.500580 | 4_4:+52306785 | Msa0687460:CDS |
| ATAGGTGACCAAACCACTGC+TGG | 0.506146 | 4_4:+52305507 | Msa0687460:intron |
| ATCTGCCAAAATTGCGACAA+AGG | 0.509695 | 4_4:+52303430 | Msa0687460:CDS |
| GCTGCCATCTTCAATGTGTA+TGG | 0.515768 | 4_4:-52303218 | None:intergenic |
| TGACAATGGTTTGAATGCTA+TGG | 0.518772 | 4_4:+52306833 | Msa0687460:CDS |
| GAATCCGTTAAGGAAGACTT+TGG | 0.520209 | 4_4:+52305363 | Msa0687460:CDS |
| AAAGTCTCTACCACCCTACT+AGG | 0.520612 | 4_4:-52307170 | None:intergenic |
| CTTGTCCACTCTCTTGCCAA+TGG | 0.521270 | 4_4:+52305399 | Msa0687460:CDS |
| TTCCGGGATGTCTCCAGCAG+TGG | 0.524370 | 4_4:-52305520 | None:intergenic |
| TGAGGATTTACCGGCAATGT+AGG | 0.526381 | 4_4:-52302161 | None:intergenic |
| ATGCTTGAGTAAAGAAACAT+AGG | 0.531931 | 4_4:-52305578 | None:intergenic |
| CAGTTCACTTGCGCGTGAGA+CGG | 0.533153 | 4_4:-52302017 | None:intergenic |
| CATATAGCAGATACATAGAA+AGG | 0.540587 | 4_4:-52307021 | None:intergenic |
| TGATGTAAAGCTCCGTTGGA+AGG | 0.542917 | 4_4:-52303396 | None:intergenic |
| GCTATGCTGGATCCAGCAAA+TGG | 0.542978 | 4_4:+52304540 | Msa0687460:CDS |
| GGATTGCCAATTAATTTGAA+AGG | 0.543647 | 4_4:+52303488 | Msa0687460:CDS |
| GACAATGGTTTGAATGCTAT+GGG | 0.544764 | 4_4:+52306834 | Msa0687460:CDS |
| TAATGACTGACAATTGGTTG+AGG | 0.547086 | 4_4:+52307210 | Msa0687460:three_prime_UTR |
| CGGCTGCTGCTGCGTACGAG+AGG | 0.547845 | 4_4:-52302087 | None:intergenic |
| ATGATGATGTAAAGCTCCGT+TGG | 0.551146 | 4_4:-52303400 | None:intergenic |
| TGAAATTCTTCTTGGCACAT+GGG | 0.554722 | 4_4:+52304004 | Msa0687460:CDS |
| AACCACTGCTGGAGACATCC+CGG | 0.557664 | 4_4:+52305518 | Msa0687460:CDS |
| CTACAGAAAGAGCTATCAGC+AGG | 0.561168 | 4_4:+52306643 | Msa0687460:CDS |
| AGAGTCAACACTATATCTGC+TGG | 0.562777 | 4_4:+52306329 | Msa0687460:CDS |
| CTTGGTGCCAAGTCCAAGGT+GGG | 0.564454 | 4_4:+52303326 | Msa0687460:CDS |
| GGTTTGAATGCTATGGGCGT+TGG | 0.565599 | 4_4:+52306840 | Msa0687460:CDS |
| CATCCGTGCAGCCCTTCCAA+CGG | 0.566826 | 4_4:+52303384 | Msa0687460:CDS |
| GCTGATAGCTCTTTCTGTAG+AGG | 0.574157 | 4_4:-52306640 | None:intergenic |
| ATCCAGCAAATGGACAGTCC+AGG | 0.577046 | 4_4:+52304550 | Msa0687460:CDS |
| CATACCATACACATTGAAGA+TGG | 0.580143 | 4_4:+52303214 | Msa0687460:exon |
| CATCAGAGAGGATCATTCCT+GGG | 0.580610 | 4_4:+52306033 | Msa0687460:CDS |
| CCTTTAGCATCGGCTATCAC+AGG | 0.582392 | 4_4:+52306795 | Msa0687460:CDS |
| TTTATTCCACGATCCCACCT+TGG | 0.585975 | 4_4:-52303339 | None:intergenic |
| CTGGTCCATTGGCAAGAGAG+TGG | 0.587174 | 4_4:-52305404 | None:intergenic |
| TAGTGATCTGGACATTCCCA+AGG | 0.589605 | 4_4:+52306881 | Msa0687460:CDS |
| CATTGGCAAGAGAGTGGACA+AGG | 0.589970 | 4_4:-52305398 | None:intergenic |
| CATCTTCAATGTGTATGGTA+TGG | 0.592572 | 4_4:-52303213 | None:intergenic |
| TTTCTTCCAATCATTAACCC+AGG | 0.594321 | 4_4:+52305601 | Msa0687460:CDS |
| GGTTCTTGGTGCCAAGTCCA+AGG | 0.594912 | 4_4:+52303322 | Msa0687460:CDS |
| CTCTCTTGCCAATGGACCAG+AGG | 0.596272 | 4_4:+52305407 | Msa0687460:CDS |
| GCTCCGTTGGAAGGGCTGCA+CGG | 0.599639 | 4_4:-52303387 | None:intergenic |
| ACCGTTCTATATGTTGACAA+TGG | 0.601081 | 4_4:+52306819 | Msa0687460:CDS |
| TCTTGGTGCCAAGTCCAAGG+TGG | 0.601682 | 4_4:+52303325 | Msa0687460:CDS |
| AATGAAGATAATTGTTATAG+CGG | 0.602441 | 4_4:-52302107 | None:intergenic |
| ACCATTGTCAACATATAGAA+CGG | 0.609256 | 4_4:-52306820 | None:intergenic |
| CCTGTGATAGCCGATGCTAA+AGG | 0.610330 | 4_4:-52306795 | None:intergenic |
| GTGGCTGATGATAATGGATA+CGG | 0.612029 | 4_4:+52303945 | Msa0687460:CDS |
| CCAAGTCCAAGGTGGGATCG+TGG | 0.612288 | 4_4:+52303333 | Msa0687460:CDS |
| GAAATTAATGCCTAGTAGGG+TGG | 0.614070 | 4_4:+52307160 | Msa0687460:three_prime_UTR |
| TTGAGTCCAGCTTACGACGT+GGG | 0.620943 | 4_4:+52304204 | Msa0687460:CDS |
| AAGAGCGTTTATTGCTGGTG+TGG | 0.626005 | 4_4:+52303926 | Msa0687460:CDS |
| GATGTAAAGCTCCGTTGGAA+GGG | 0.627579 | 4_4:-52303395 | None:intergenic |
| TGGTCTAGATTGCATTACTG+CGG | 0.631797 | 4_4:+52307103 | Msa0687460:three_prime_UTR |
| TCATATGTAACAGAGGAGGT+GGG | 0.636128 | 4_4:+52306747 | Msa0687460:intron |
| CTGCTGGAGACATCCCGGAA+AGG | 0.640035 | 4_4:+52305523 | Msa0687460:CDS |
| TGATGATACAGATACGGCGG+TGG | 0.642111 | 4_4:+52306132 | Msa0687460:intron |
| CTGATGATAATGGATACGGA+TGG | 0.656811 | 4_4:+52303949 | Msa0687460:CDS |
| AGACTACACTGTCTAAGTTG+GGG | 0.666950 | 4_4:-52306928 | None:intergenic |
| TGATGATAATGGATACGGAT+GGG | 0.675921 | 4_4:+52303950 | Msa0687460:CDS |
| TTTGAGTCCAGCTTACGACG+TGG | 0.685237 | 4_4:+52304203 | Msa0687460:CDS |
| TCACATACATCGCATCAGAG+AGG | 0.710453 | 4_4:+52306021 | Msa0687460:CDS |
| TAGCTACACTCTAACACGCG+CGG | 0.712681 | 4_4:-52301988 | None:intergenic |
| AAGAACCACAGTGCTCACAT+CGG | 0.713720 | 4_4:-52303306 | None:intergenic |
| AAATGATGATACAGATACGG+CGG | 0.727109 | 4_4:+52306129 | Msa0687460:intron |
| GTTTGCCGATGTGAGCACTG+TGG | 0.800515 | 4_4:+52303301 | Msa0687460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTAAGTTTTTATTTTATTT+CGG | + | chr4_4:52304031-52304050 | Msa0687460:intron | 10.0% |
| !! | TTATTAAAAAAAATGAAATG+AGG | - | chr4_4:52304434-52304453 | None:intergenic | 10.0% |
| !! | ATAAAAAAAAATTATATACC+TGG | - | chr4_4:52304571-52304590 | None:intergenic | 10.0% |
| !!! | TTTTAATCTTAAACTGTTTA+CGG | + | chr4_4:52302227-52302246 | Msa0687460:intron | 15.0% |
| !!! | AATGAATAAAAGTTGAATTT+TGG | - | chr4_4:52302261-52302280 | None:intergenic | 15.0% |
| !! | TCATTCAAATACAATTAAAA+AGG | - | chr4_4:52302298-52302317 | None:intergenic | 15.0% |
| !!! | CATAAGTTATTTGATTTTAA+TGG | + | chr4_4:52302473-52302492 | Msa0687460:intron | 15.0% |
| !!! | AACTTATTTTTTTGTCATAT+TGG | + | chr4_4:52302564-52302583 | Msa0687460:intron | 15.0% |
| !!! | GTTTTTCTATAATGTTTTTA+AGG | + | chr4_4:52302744-52302763 | Msa0687460:intron | 15.0% |
| !! | AAATAACCTTTCAAATTAAT+TGG | - | chr4_4:52303497-52303516 | None:intergenic | 15.0% |
| !! | GAAATAAAATAAAAACTTAC+AGG | - | chr4_4:52304032-52304051 | None:intergenic | 15.0% |
| !!! | ATTTTATTTCGGATAAAAAA+CGG | + | chr4_4:52304042-52304061 | Msa0687460:intron | 15.0% |
| !! | AAAAATAAAAAATCAGTATG+AGG | - | chr4_4:52304489-52304508 | None:intergenic | 15.0% |
| !!! | TCATACTGATTTTTTATTTT+TGG | + | chr4_4:52304488-52304507 | Msa0687460:intron | 15.0% |
| !!! | CATACTGATTTTTTATTTTT+GGG | + | chr4_4:52304489-52304508 | Msa0687460:intron | 15.0% |
| !!! | AGTAATAAATGATTTTCATT+TGG | + | chr4_4:52305156-52305175 | Msa0687460:intron | 15.0% |
| !!! | GTAATAAATGATTTTCATTT+GGG | + | chr4_4:52305157-52305176 | Msa0687460:intron | 15.0% |
| !! | TAATAAAAATGTTTGATCTA+TGG | + | chr4_4:52307075-52307094 | Msa0687460:three_prime_UTR | 15.0% |
| !! | AATGAAGATAATTGTTATAG+CGG | - | chr4_4:52302110-52302129 | None:intergenic | 20.0% |
| !! | TTTAATCTTAAACTGTTTAC+GGG | + | chr4_4:52302228-52302247 | Msa0687460:intron | 20.0% |
| !!! | TTTTATTCATTTTGCATAAC+TGG | + | chr4_4:52302270-52302289 | Msa0687460:intron | 20.0% |
| !!! | TTTATTCATTTTGCATAACT+GGG | + | chr4_4:52302271-52302290 | Msa0687460:intron | 20.0% |
| !!! | TTTTTGTGACTGTATATAAA+AGG | + | chr4_4:52302509-52302528 | Msa0687460:intron | 20.0% |
| !! | AATAAGCTAAAAACAGATTA+TGG | - | chr4_4:52302966-52302985 | None:intergenic | 20.0% |
| !! | TTAAAGTGAGCATAAAAAAA+TGG | - | chr4_4:52303521-52303540 | None:intergenic | 20.0% |
| !! | TTATGCTCACTTTAATTAAT+AGG | + | chr4_4:52303526-52303545 | Msa0687460:intron | 20.0% |
| !!! | TGAAAAAATTGGTAGTTAAT+GGG | - | chr4_4:52303623-52303642 | None:intergenic | 20.0% |
| !!! | ATGAAAAAATTGGTAGTTAA+TGG | - | chr4_4:52303624-52303643 | None:intergenic | 20.0% |
| !! | TTATCAACAAAAGATAAATC+TGG | - | chr4_4:52303802-52303821 | None:intergenic | 20.0% |
| !!! | TTTTATTTCGGATAAAAAAC+GGG | + | chr4_4:52304043-52304062 | Msa0687460:intron | 20.0% |
| !! | ATAAATGTATCACTTACAAA+AGG | - | chr4_4:52304149-52304168 | None:intergenic | 20.0% |
| !! | ATATAGTGTATTACAAGTTT+AGG | + | chr4_4:52304651-52304670 | Msa0687460:intron | 20.0% |
| !! | ATATCATTCAATTGAAAAGA+TGG | - | chr4_4:52304846-52304865 | None:intergenic | 20.0% |
| !!! | TATATTGCAACTGTATTTTA+AGG | + | chr4_4:52304941-52304960 | Msa0687460:intron | 20.0% |
| !!! | TAATTTGTTTTATACCATGT+TGG | + | chr4_4:52305013-52305032 | Msa0687460:intron | 20.0% |
| !!! | AATTTGTTTTATACCATGTT+GGG | + | chr4_4:52305014-52305033 | Msa0687460:intron | 20.0% |
| !!! | TAAGCAATTAACTTTGTTAT+AGG | + | chr4_4:52305489-52305508 | Msa0687460:intron | 20.0% |
| !! | AAGGCTAATAAAAAATACTT+TGG | - | chr4_4:52305869-52305888 | None:intergenic | 20.0% |
| !!! | TATTAATTAGATTGTTGACT+AGG | - | chr4_4:52305936-52305955 | None:intergenic | 20.0% |
| ! | CAAAACTAAACAATTAGATG+AGG | - | chr4_4:52302182-52302201 | None:intergenic | 25.0% |
| !!! | TTGTTTAGTTTTGAGTTGTA+AGG | + | chr4_4:52302189-52302208 | Msa0687460:intron | 25.0% |
| !!! | TGTTTAGTTTTGAGTTGTAA+GGG | + | chr4_4:52302190-52302209 | Msa0687460:intron | 25.0% |
| ! | TTTCAGTTTAGTGAAAATTG+CGG | + | chr4_4:52302413-52302432 | Msa0687460:intron | 25.0% |
| ! | ACAATGGAACATAAAAATAC+AGG | - | chr4_4:52302813-52302832 | None:intergenic | 25.0% |
| !!! | GTATTTTTATGTTCCATTGT+TGG | + | chr4_4:52302813-52302832 | Msa0687460:intron | 25.0% |
| ! | GATGATTGAGAAATCAATTA+AGG | + | chr4_4:52302840-52302859 | Msa0687460:intron | 25.0% |
| ! | AATTAAGGATGTGTTTGAAT+TGG | + | chr4_4:52302855-52302874 | Msa0687460:intron | 25.0% |
| ! | GAAACAGTTTATAAACACAT+CGG | + | chr4_4:52302935-52302954 | Msa0687460:intron | 25.0% |
| ! | AGTTTCCTGATGTAAATTTA+GGG | + | chr4_4:52303181-52303200 | Msa0687460:intron | 25.0% |
| !! | GAAAAAATTGGTAGTTAATG+GGG | - | chr4_4:52303622-52303641 | None:intergenic | 25.0% |
| !! | TTTTTGCACTAAATAGCATA+TGG | - | chr4_4:52303656-52303675 | None:intergenic | 25.0% |
| ! | AGTTGTAAAATATTGCCTAT+AGG | + | chr4_4:52303675-52303694 | Msa0687460:intron | 25.0% |
| ! | GTTGTAAAATATTGCCTATA+GGG | + | chr4_4:52303676-52303695 | Msa0687460:intron | 25.0% |
| ! | TTGTAAAATATTGCCTATAG+GGG | + | chr4_4:52303677-52303696 | Msa0687460:intron | 25.0% |
| !!! | TTTTGTAGGCTTTAATTTAC+TGG | + | chr4_4:52304718-52304737 | Msa0687460:intron | 25.0% |
| !! | TTTGTAGGCTTTAATTTACT+GGG | + | chr4_4:52304719-52304738 | Msa0687460:intron | 25.0% |
| !! | TGTTTCTTAAGTGAGTTTTT+GGG | - | chr4_4:52304815-52304834 | None:intergenic | 25.0% |
| !!! | TTGTTTCTTAAGTGAGTTTT+TGG | - | chr4_4:52304816-52304835 | None:intergenic | 25.0% |
| !!! | ATGGAAAAGTATCATAGATT+CGG | - | chr4_4:52305107-52305126 | None:intergenic | 25.0% |
| ! | TGAACATAAGATATATAGCA+AGG | - | chr4_4:52305319-52305338 | None:intergenic | 25.0% |
| ! | GATGCTTATTACTCTATTTA+CGG | - | chr4_4:52305435-52305454 | None:intergenic | 25.0% |
| ! | TACAAAGTCATAAAGAAAGT+CGG | - | chr4_4:52305457-52305476 | None:intergenic | 25.0% |
| ! | AGTTAATTGCTTAATAAAGC+TGG | - | chr4_4:52305482-52305501 | None:intergenic | 25.0% |
| !!! | AATGGAAGCATTATTAGATA+AGG | - | chr4_4:52305633-52305652 | None:intergenic | 25.0% |
| ! | ACTAAATGATGATACAGATA+CGG | + | chr4_4:52306126-52306145 | Msa0687460:intron | 25.0% |
| ! | AACTAAAAATAACTGTGAGA+CGG | - | chr4_4:52306214-52306233 | None:intergenic | 25.0% |
| !!! | TCACAGTTATTTTTAGTTGT+TGG | + | chr4_4:52306216-52306235 | Msa0687460:intron | 25.0% |
| !! | ACTTCATTTGATTTAAACGT+AGG | - | chr4_4:52306394-52306413 | None:intergenic | 25.0% |
| ! | TGCAAATAATCAAAAGATTG+AGG | - | chr4_4:52306712-52306731 | None:intergenic | 25.0% |
| !! | TCAATTTTCATATGTAACAG+AGG | + | chr4_4:52306740-52306759 | Msa0687460:intron | 25.0% |
| !!! | ATGTTTGATCTATGGTTTTA+TGG | + | chr4_4:52307083-52307102 | Msa0687460:three_prime_UTR | 25.0% |
| ! | AAAGAAATTAATGCCTAGTA+GGG | + | chr4_4:52307157-52307176 | Msa0687460:three_prime_UTR | 25.0% |
| GAGAATTTAGTAGAAGTTGT+TGG | - | chr4_4:52302133-52302152 | None:intergenic | 30.0% | |
| ACAATTAGATGAGGATTTAC+CGG | - | chr4_4:52302173-52302192 | None:intergenic | 30.0% | |
| TACATAAACAAACACAATGC+AGG | - | chr4_4:52302361-52302380 | None:intergenic | 30.0% | |
| ACAAAAACAGGAAAAAAGCT+TGG | - | chr4_4:52302389-52302408 | None:intergenic | 30.0% | |
| AACTGAAACTGAACAAAAAC+AGG | - | chr4_4:52302401-52302420 | None:intergenic | 30.0% | |
| !!! | TTTTTGTCATATTGGCTTTG+TGG | + | chr4_4:52302572-52302591 | Msa0687460:intron | 30.0% |
| AAAAGCAGCTTAATTATGTG+TGG | - | chr4_4:52302598-52302617 | None:intergenic | 30.0% | |
| ATTGATGCTAAGTTGTTTGT+TGG | + | chr4_4:52302776-52302795 | Msa0687460:intron | 30.0% | |
| TCAATCATCAAATCCAACAA+TGG | - | chr4_4:52302829-52302848 | None:intergenic | 30.0% | |
| ATTCAAACTGTTTGCATATG+TGG | - | chr4_4:52303029-52303048 | None:intergenic | 30.0% | |
| TATAAGTGCTTATCCAAACA+AGG | + | chr4_4:52303112-52303131 | Msa0687460:intron | 30.0% | |
| !! | AAAAGACTTAAAGCCTTGTT+TGG | - | chr4_4:52303128-52303147 | None:intergenic | 30.0% |
| CAGTTTCCTGATGTAAATTT+AGG | + | chr4_4:52303180-52303199 | Msa0687460:intron | 30.0% | |
| AGAAACCCTAAATTTACATC+AGG | - | chr4_4:52303189-52303208 | None:intergenic | 30.0% | |
| TTAATTGGCAATCCTGAAAT+TGG | - | chr4_4:52303482-52303501 | None:intergenic | 30.0% | |
| ! | GGATTGCCAATTAATTTGAA+AGG | + | chr4_4:52303488-52303507 | Msa0687460:CDS | 30.0% |
| GCGATATGCTATGAAAAAAT+TGG | - | chr4_4:52303634-52303653 | None:intergenic | 30.0% | |
| TGTAAAATATTGCCTATAGG+GGG | + | chr4_4:52303678-52303697 | Msa0687460:intron | 30.0% | |
| TCACAGATCATACAAAATAG+CGG | - | chr4_4:52303740-52303759 | None:intergenic | 30.0% | |
| !! | TAACTGTGAACCATTTTTGT+AGG | + | chr4_4:52304169-52304188 | Msa0687460:intron | 30.0% |
| ATTACCTGATGGTTCATTAA+TGG | + | chr4_4:52304332-52304351 | Msa0687460:CDS | 30.0% | |
| ATTTCCATTAATGAACCATC+AGG | - | chr4_4:52304339-52304358 | None:intergenic | 30.0% | |
| AATTACCAAAGTTTATCCCT+TGG | + | chr4_4:52304356-52304375 | Msa0687460:CDS | 30.0% | |
| ! | TTTTCTGCTAGATATTTTGC+AGG | + | chr4_4:52304694-52304713 | Msa0687460:intron | 30.0% |
| ! | TTGTAGGCTTTAATTTACTG+GGG | + | chr4_4:52304720-52304739 | Msa0687460:intron | 30.0% |
| ! | GTTTCTTAAGTGAGTTTTTG+GGG | - | chr4_4:52304814-52304833 | None:intergenic | 30.0% |
| ! | TAAGAGCAACTAAAAGTATG+AGG | - | chr4_4:52304898-52304917 | None:intergenic | 30.0% |
| !! | TGGAAAAGTATCATAGATTC+GGG | - | chr4_4:52305106-52305125 | None:intergenic | 30.0% |
| ! | ATGATACTTTTCCATTCTCA+AGG | + | chr4_4:52305112-52305131 | Msa0687460:intron | 30.0% |
| TCATTTGGGTAATTAAGCAT+AGG | + | chr4_4:52305171-52305190 | Msa0687460:intron | 30.0% | |
| CATTTGGGTAATTAAGCATA+GGG | + | chr4_4:52305172-52305191 | Msa0687460:intron | 30.0% | |
| TAATACTTCATTAGAGTCCA+TGG | - | chr4_4:52305224-52305243 | None:intergenic | 30.0% | |
| ATGCTTGAGTAAAGAAACAT+AGG | - | chr4_4:52305581-52305600 | None:intergenic | 30.0% | |
| TTGTTTGCGTAATCTTTATG+AGG | + | chr4_4:52305662-52305681 | Msa0687460:intron | 30.0% | |
| CATCGTATTAGAATTTGACT+AGG | - | chr4_4:52305735-52305754 | None:intergenic | 30.0% | |
| !! | TCCTATGTTTTCTAGAGATA+TGG | + | chr4_4:52305843-52305862 | Msa0687460:intron | 30.0% |
| ATTTAAAAATCCCAGTGACA+GGG | - | chr4_4:52306248-52306267 | None:intergenic | 30.0% | |
| AATTTAAAAATCCCAGTGAC+AGG | - | chr4_4:52306249-52306268 | None:intergenic | 30.0% | |
| !!! | AGCTTAATTCATGCTTTTTC+AGG | + | chr4_4:52306271-52306290 | Msa0687460:intron | 30.0% |
| TGATAAAAAGAGAAGTCACA+AGG | - | chr4_4:52306357-52306376 | None:intergenic | 30.0% | |
| ! | CATTTGATTTAAACGTAGGA+AGG | - | chr4_4:52306390-52306409 | None:intergenic | 30.0% |
| CAAGATGAAATTAGTAGAAG+GGG | - | chr4_4:52306472-52306491 | None:intergenic | 30.0% | |
| CCAAGATGAAATTAGTAGAA+GGG | - | chr4_4:52306473-52306492 | None:intergenic | 30.0% | |
| ACCAAGATGAAATTAGTAGA+AGG | - | chr4_4:52306474-52306493 | None:intergenic | 30.0% | |
| ! | ATTTTCATATGTAACAGAGG+AGG | + | chr4_4:52306743-52306762 | Msa0687460:intron | 30.0% |
| ACCATTGTCAACATATAGAA+CGG | - | chr4_4:52306823-52306842 | None:intergenic | 30.0% | |
| ATGTCCAGATCACTAAATAT+AGG | - | chr4_4:52306876-52306895 | None:intergenic | 30.0% | |
| !!! | TATTTGCTTCGCTTTTTTGT+AGG | + | chr4_4:52306961-52306980 | Msa0687460:intron | 30.0% |
| CATATAGCAGATACATAGAA+AGG | - | chr4_4:52307024-52307043 | None:intergenic | 30.0% | |
| TTCAAGCAATGTACAGAATT+TGG | - | chr4_4:52307132-52307151 | None:intergenic | 30.0% | |
| GAAAGAAATTAATGCCTAGT+AGG | + | chr4_4:52307156-52307175 | Msa0687460:three_prime_UTR | 30.0% | |
| AGAGTTTAATGACTGACAAT+TGG | + | chr4_4:52307204-52307223 | Msa0687460:three_prime_UTR | 30.0% | |
| !! | TCATTTTTCTCCTACATTGC+CGG | + | chr4_4:52302151-52302170 | Msa0687460:five_prime_UTR | 35.0% |
| ACAAATGACGATATCCAAGT+GGG | - | chr4_4:52302661-52302680 | None:intergenic | 35.0% | |
| ! | GCTAAGTTGTTTGTTGGTAA+TGG | + | chr4_4:52302782-52302801 | Msa0687460:intron | 35.0% |
| ! | TAAGCACTTGTGAGACTTTT+AGG | + | chr4_4:52302902-52302921 | Msa0687460:intron | 35.0% |
| CATCTTCAATGTGTATGGTA+TGG | - | chr4_4:52303216-52303235 | None:intergenic | 35.0% | |
| CATACCATACACATTGAAGA+TGG | + | chr4_4:52303214-52303233 | Msa0687460:exon | 35.0% | |
| AGTGTTCTTTCATATTCTCC+TGG | + | chr4_4:52303840-52303859 | Msa0687460:intron | 35.0% | |
| CTGAAAATAGCGTTATTTGC+AGG | + | chr4_4:52303900-52303919 | Msa0687460:intron | 35.0% | |
| !! | TGATGATAATGGATACGGAT+GGG | + | chr4_4:52303950-52303969 | Msa0687460:CDS | 35.0% |
| TGAAATTCTTCTTGGCACAT+GGG | + | chr4_4:52304004-52304023 | Msa0687460:CDS | 35.0% | |
| TCAGTCGATACAAATTCACT+TGG | + | chr4_4:52304072-52304091 | Msa0687460:intron | 35.0% | |
| TGTATCACTTACAAAAGGAG+TGG | - | chr4_4:52304144-52304163 | None:intergenic | 35.0% | |
| ATGTTCAGAGCCTACAAAAA+TGG | - | chr4_4:52304182-52304201 | None:intergenic | 35.0% | |
| ! | TTTTCCTTCAGATTACCTGA+TGG | + | chr4_4:52304321-52304340 | Msa0687460:intron | 35.0% |
| TTGTCAAAAACAGCATCCAA+GGG | - | chr4_4:52304375-52304394 | None:intergenic | 35.0% | |
| ATTGTCAAAAACAGCATCCA+AGG | - | chr4_4:52304376-52304395 | None:intergenic | 35.0% | |
| !!! | TGCTGTTTTTGACAATCTTG+AGG | + | chr4_4:52304380-52304399 | Msa0687460:CDS | 35.0% |
| CATCTATTGCTTACATCTTC+TGG | - | chr4_4:52304411-52304430 | None:intergenic | 35.0% | |
| ! | TCTTGGTCAAAATGCTCTTT+TGG | + | chr4_4:52304591-52304610 | Msa0687460:intron | 35.0% |
| ATGTATAATACTCGTGACAG+TGG | - | chr4_4:52304617-52304636 | None:intergenic | 35.0% | |
| TGTCACGAGTATTATACATG+TGG | + | chr4_4:52304618-52304637 | Msa0687460:intron | 35.0% | |
| GTCACGAGTATTATACATGT+GGG | + | chr4_4:52304619-52304638 | Msa0687460:intron | 35.0% | |
| ! | GATATTTTGCAGGCTTTTGT+AGG | + | chr4_4:52304704-52304723 | Msa0687460:intron | 35.0% |
| ! | TGTAGGCTTTAATTTACTGG+GGG | + | chr4_4:52304721-52304740 | Msa0687460:intron | 35.0% |
| !! | TCTGGTGTCACATACTATAT+TGG | + | chr4_4:52304757-52304776 | Msa0687460:intron | 35.0% |
| AACTGTCTTAAAACCCAACA+TGG | - | chr4_4:52305030-52305049 | None:intergenic | 35.0% | |
| GCTTAAAGATGAGTAGTTGA+AGG | - | chr4_4:52305084-52305103 | None:intergenic | 35.0% | |
| AGCATAGGGTAATTTCTTTC+TGG | + | chr4_4:52305186-52305205 | Msa0687460:intron | 35.0% | |
| GCATAGGGTAATTTCTTTCT+GGG | + | chr4_4:52305187-52305206 | Msa0687460:intron | 35.0% | |
| ! | AACTAGATCTCAAGCTCTTT+TGG | + | chr4_4:52305268-52305287 | Msa0687460:intron | 35.0% |
| !! | ATGTTCATCACTCACTTTTC+AGG | + | chr4_4:52305332-52305351 | Msa0687460:intron | 35.0% |
| TTTCTTCCAATCATTAACCC+AGG | + | chr4_4:52305601-52305620 | Msa0687460:CDS | 35.0% | |
| ATTAGATAAGGTACATGCCT+GGG | - | chr4_4:52305621-52305640 | None:intergenic | 35.0% | |
| TATTAGATAAGGTACATGCC+TGG | - | chr4_4:52305622-52305641 | None:intergenic | 35.0% | |
| CGCAAACAAAAGCAATAGAA+TGG | - | chr4_4:52305651-52305670 | None:intergenic | 35.0% | |
| TGCGTAATCTTTATGAGGTT+TGG | + | chr4_4:52305667-52305686 | Msa0687460:intron | 35.0% | |
| GCGTAATCTTTATGAGGTTT+GGG | + | chr4_4:52305668-52305687 | Msa0687460:intron | 35.0% | |
| !!! | TTAGCTTTTGAGACTGAGTT+AGG | + | chr4_4:52305709-52305728 | Msa0687460:intron | 35.0% |
| AGCCTGTTCTATGTCTTTAT+TGG | + | chr4_4:52305759-52305778 | Msa0687460:intron | 35.0% | |
| GCCTGTTCTATGTCTTTATT+GGG | + | chr4_4:52305760-52305779 | Msa0687460:intron | 35.0% | |
| ! | GCCATATCTCTAGAAAACAT+AGG | - | chr4_4:52305847-52305866 | None:intergenic | 35.0% |
| TAAGCATAATCAACATACCC+AGG | - | chr4_4:52306053-52306072 | None:intergenic | 35.0% | |
| AAATGATGATACAGATACGG+CGG | + | chr4_4:52306129-52306148 | Msa0687460:intron | 35.0% | |
| AGCAAATACGAAACAGTATG+AGG | - | chr4_4:52306446-52306465 | None:intergenic | 35.0% | |
| CCCTTCTACTAATTTCATCT+TGG | + | chr4_4:52306470-52306489 | Msa0687460:intron | 35.0% | |
| !! | GTTCGTGAATTTAGTTCTTG+TGG | + | chr4_4:52306519-52306538 | Msa0687460:intron | 35.0% |
| ATCAAAAGATTGAGGTGAAC+TGG | - | chr4_4:52306704-52306723 | None:intergenic | 35.0% | |
| ACCGTTCTATATGTTGACAA+TGG | + | chr4_4:52306819-52306838 | Msa0687460:CDS | 35.0% | |
| TGACAATGGTTTGAATGCTA+TGG | + | chr4_4:52306833-52306852 | Msa0687460:CDS | 35.0% | |
| GACAATGGTTTGAATGCTAT+GGG | + | chr4_4:52306834-52306853 | Msa0687460:CDS | 35.0% | |
| CAGTCCTATATTTAGTGATC+TGG | + | chr4_4:52306869-52306888 | Msa0687460:CDS | 35.0% | |
| TAATGACTGACAATTGGTTG+AGG | + | chr4_4:52307210-52307229 | Msa0687460:three_prime_UTR | 35.0% | |
| !! | GGAAGTGTCGAACAAATGTT+TGG | - | chr4_4:52302059-52302078 | None:intergenic | 40.0% |
| TGAATGAATACAACCCCACT+TGG | + | chr4_4:52302644-52302663 | Msa0687460:intron | 40.0% | |
| CAAATGACGATATCCAAGTG+GGG | - | chr4_4:52302660-52302679 | None:intergenic | 40.0% | |
| GACAAATGACGATATCCAAG+TGG | - | chr4_4:52302662-52302681 | None:intergenic | 40.0% | |
| CTAGTCCGTAATTAAGCTGT+TGG | + | chr4_4:52302681-52302700 | Msa0687460:intron | 40.0% | |
| CGTTGCCAACAGCTTAATTA+CGG | - | chr4_4:52302689-52302708 | None:intergenic | 40.0% | |
| ! | TCGGCAAACTTTTGTGATGA+AGG | - | chr4_4:52303290-52303309 | None:intergenic | 40.0% |
| ! | ATGATGATGTAAAGCTCCGT+TGG | - | chr4_4:52303403-52303422 | None:intergenic | 40.0% |
| ATCTGCCAAAATTGCGACAA+AGG | + | chr4_4:52303430-52303449 | Msa0687460:CDS | 40.0% | |
| ! | CATTGCCTTTGTCGCAATTT+TGG | - | chr4_4:52303438-52303457 | None:intergenic | 40.0% |
| AGCGAAACAAGTCCAATTTC+AGG | + | chr4_4:52303467-52303486 | Msa0687460:CDS | 40.0% | |
| ! | TTGGTAGTTAATGGGGAACA+AGG | - | chr4_4:52303615-52303634 | None:intergenic | 40.0% |
| AGTCAAAGACAGCAATATCC+AGG | - | chr4_4:52303861-52303880 | None:intergenic | 40.0% | |
| !! | GGTAAAAGAGCGTTTATTGC+TGG | + | chr4_4:52303921-52303940 | Msa0687460:intron | 40.0% |
| !! | GTGGCTGATGATAATGGATA+CGG | + | chr4_4:52303945-52303964 | Msa0687460:CDS | 40.0% |
| !! | CTGATGATAATGGATACGGA+TGG | + | chr4_4:52303949-52303968 | Msa0687460:CDS | 40.0% |
| CTGAAATTCTTCTTGGCACA+TGG | + | chr4_4:52304003-52304022 | Msa0687460:CDS | 40.0% | |
| CTTATTAGCAAGACGTTGCA+TGG | - | chr4_4:52304289-52304308 | None:intergenic | 40.0% | |
| TGAACCATCAGGTAATCTGA+AGG | - | chr4_4:52304328-52304347 | None:intergenic | 40.0% | |
| AGCATCCAAGGGATAAACTT+TGG | - | chr4_4:52304364-52304383 | None:intergenic | 40.0% | |
| AAAACAAACAAGCGCTATGC+TGG | + | chr4_4:52304527-52304546 | Msa0687460:CDS | 40.0% | |
| ! | TTTAATTTACTGGGGGACCA+AGG | + | chr4_4:52304728-52304747 | Msa0687460:intron | 40.0% |
| TCATCTCTCTTCCTTGAGAA+TGG | - | chr4_4:52305126-52305145 | None:intergenic | 40.0% | |
| GAATCCGTTAAGGAAGACTT+TGG | + | chr4_4:52305363-52305382 | Msa0687460:CDS | 40.0% | |
| TACTCTATTTACGGTACCTC+TGG | - | chr4_4:52305426-52305445 | None:intergenic | 40.0% | |
| TTGCAGCAAGATATCCTTTC+CGG | - | chr4_4:52305540-52305559 | None:intergenic | 40.0% | |
| TACATGCCTGGGTTAATGAT+TGG | - | chr4_4:52305610-52305629 | None:intergenic | 40.0% | |
| GTCTCAAAAGCTAACTCAAG+AGG | - | chr4_4:52305703-52305722 | None:intergenic | 40.0% | |
| GCCCAATAAAGACATAGAAC+AGG | - | chr4_4:52305764-52305783 | None:intergenic | 40.0% | |
| TACCTGTCTGACGTATTTGT+AGG | + | chr4_4:52305981-52306000 | Msa0687460:intron | 40.0% | |
| AGAGTCAACACTATATCTGC+TGG | + | chr4_4:52306329-52306348 | Msa0687460:CDS | 40.0% | |
| GTTACAAGGAACAATCCTGA+TGG | - | chr4_4:52306677-52306696 | None:intergenic | 40.0% | |
| TTCATATGTAACAGAGGAGG+TGG | + | chr4_4:52306746-52306765 | Msa0687460:intron | 40.0% | |
| TCATATGTAACAGAGGAGGT+GGG | + | chr4_4:52306747-52306766 | Msa0687460:intron | 40.0% | |
| AGACTACACTGTCTAAGTTG+GGG | - | chr4_4:52306931-52306950 | None:intergenic | 40.0% | |
| GAGACTACACTGTCTAAGTT+GGG | - | chr4_4:52306932-52306951 | None:intergenic | 40.0% | |
| AGCGAAGCAAATACTCTAAG+TGG | - | chr4_4:52306954-52306973 | None:intergenic | 40.0% | |
| TGGTCTAGATTGCATTACTG+CGG | + | chr4_4:52307103-52307122 | Msa0687460:three_prime_UTR | 40.0% | |
| GAAATTAATGCCTAGTAGGG+TGG | + | chr4_4:52307160-52307179 | Msa0687460:three_prime_UTR | 40.0% | |
| TGAGGATTTACCGGCAATGT+AGG | - | chr4_4:52302164-52302183 | None:intergenic | 45.0% | |
| GCTGCCATCTTCAATGTGTA+TGG | - | chr4_4:52303221-52303240 | None:intergenic | 45.0% | |
| AAGAACCACAGTGCTCACAT+CGG | - | chr4_4:52303309-52303328 | None:intergenic | 45.0% | |
| TTTATTCCACGATCCCACCT+TGG | - | chr4_4:52303342-52303361 | None:intergenic | 45.0% | |
| GATGTAAAGCTCCGTTGGAA+GGG | - | chr4_4:52303398-52303417 | None:intergenic | 45.0% | |
| TGATGTAAAGCTCCGTTGGA+AGG | - | chr4_4:52303399-52303418 | None:intergenic | 45.0% | |
| !! | AAGAGCGTTTATTGCTGGTG+TGG | + | chr4_4:52303926-52303945 | Msa0687460:CDS | 45.0% |
| GCTGGAGCTGAAATTCTTCT+TGG | + | chr4_4:52303996-52304015 | Msa0687460:CDS | 45.0% | |
| GGAATGCATACACAACAGGA+AGG | - | chr4_4:52304123-52304142 | None:intergenic | 45.0% | |
| GAGTGGAATGCATACACAAC+AGG | - | chr4_4:52304127-52304146 | None:intergenic | 45.0% | |
| AAATTTCCCACGTCGTAAGC+TGG | - | chr4_4:52304213-52304232 | None:intergenic | 45.0% | |
| !! | TCTGGGTGTTGAAGAATCCA+TGG | + | chr4_4:52305204-52305223 | Msa0687460:intron | 45.0% |
| GGAAGTTGCTGAATCCGTTA+AGG | + | chr4_4:52305353-52305372 | Msa0687460:intron | 45.0% | |
| GCTGCCAAAGTCTTCCTTAA+CGG | - | chr4_4:52305370-52305389 | None:intergenic | 45.0% | |
| TGCAGCAAGATATCCTTTCC+GGG | - | chr4_4:52305539-52305558 | None:intergenic | 45.0% | |
| AACCCCAAAAGCTAGCTCAA+GGG | - | chr4_4:52305905-52305924 | None:intergenic | 45.0% | |
| CACCTACAAATACGTCAGAC+AGG | - | chr4_4:52305986-52306005 | None:intergenic | 45.0% | |
| CTGTCTGACGTATTTGTAGG+TGG | + | chr4_4:52305984-52306003 | Msa0687460:intron | 45.0% | |
| TCACATACATCGCATCAGAG+AGG | + | chr4_4:52306021-52306040 | Msa0687460:CDS | 45.0% | |
| CATCAGAGAGGATCATTCCT+GGG | + | chr4_4:52306033-52306052 | Msa0687460:CDS | 45.0% | |
| TTTGCAGCACGACTTCTTAG+TGG | - | chr4_4:52306571-52306590 | None:intergenic | 45.0% | |
| AGTCGTGCTGCAAAAGCAAT+TGG | + | chr4_4:52306577-52306596 | Msa0687460:CDS | 45.0% | |
| ! | CTCTTTCTGTAGAGGTGCAT+TGG | - | chr4_4:52306635-52306654 | None:intergenic | 45.0% |
| GCTGATAGCTCTTTCTGTAG+AGG | - | chr4_4:52306643-52306662 | None:intergenic | 45.0% | |
| CTACAGAAAGAGCTATCAGC+AGG | + | chr4_4:52306643-52306662 | Msa0687460:CDS | 45.0% | |
| CAGCAGGTAACATTTCCATC+AGG | + | chr4_4:52306659-52306678 | Msa0687460:intron | 45.0% | |
| GGTGAACTGGTTGTGTTACA+AGG | - | chr4_4:52306691-52306710 | None:intergenic | 45.0% | |
| CTTGTCGTCACCTTTAGCAT+CGG | + | chr4_4:52306785-52306804 | Msa0687460:CDS | 45.0% | |
| TAGTGATCTGGACATTCCCA+AGG | + | chr4_4:52306881-52306900 | Msa0687460:CDS | 45.0% | |
| GGAGACTACACTGTCTAAGT+TGG | - | chr4_4:52306933-52306952 | None:intergenic | 45.0% | |
| TGCTATATGCTCAGAAGAGC+AGG | + | chr4_4:52307035-52307054 | Msa0687460:three_prime_UTR | 45.0% | |
| AAAGTCTCTACCACCCTACT+AGG | - | chr4_4:52307173-52307192 | None:intergenic | 45.0% | |
| !!! | ATATAATTTTTTTTTATTCT+TGG | + | chr4_4:52304574-52304593 | Msa0687460:intron | 5.0% |
| TAGCTACACTCTAACACGCG+CGG | - | chr4_4:52301991-52302010 | None:intergenic | 50.0% | |
| TGCGTACGAGAGGAAAGCTT+TGG | - | chr4_4:52302080-52302099 | None:intergenic | 50.0% | |
| ! | GATGTGAGCACTGTGGTTCT+TGG | + | chr4_4:52303308-52303327 | Msa0687460:CDS | 50.0% |
| AGTGTTCTAGCACCCCCTAT+AGG | - | chr4_4:52303693-52303712 | None:intergenic | 50.0% | |
| GCTGGTGTGGCTGATGATAA+TGG | + | chr4_4:52303939-52303958 | Msa0687460:CDS | 50.0% | |
| GCAAAATCTCTTGCTGCAGC+TGG | + | chr4_4:52303978-52303997 | Msa0687460:CDS | 50.0% | |
| TTTGAGTCCAGCTTACGACG+TGG | + | chr4_4:52304203-52304222 | Msa0687460:CDS | 50.0% | |
| TTGAGTCCAGCTTACGACGT+GGG | + | chr4_4:52304204-52304223 | Msa0687460:CDS | 50.0% | |
| GCTATGCTGGATCCAGCAAA+TGG | + | chr4_4:52304540-52304559 | Msa0687460:CDS | 50.0% | |
| ATCCAGCAAATGGACAGTCC+AGG | + | chr4_4:52304550-52304569 | Msa0687460:CDS | 50.0% | |
| TACCTGGACTGTCCATTTGC+TGG | - | chr4_4:52304555-52304574 | None:intergenic | 50.0% | |
| GTGACACCAGACTAGTACCT+TGG | - | chr4_4:52304748-52304767 | None:intergenic | 50.0% | |
| CATTGGCAAGAGAGTGGACA+AGG | - | chr4_4:52305401-52305420 | None:intergenic | 50.0% | |
| CTTGTCCACTCTCTTGCCAA+TGG | + | chr4_4:52305399-52305418 | Msa0687460:CDS | 50.0% | |
| TTACGGTACCTCTGGTCCAT+TGG | - | chr4_4:52305418-52305437 | None:intergenic | 50.0% | |
| ATAGGTGACCAAACCACTGC+TGG | + | chr4_4:52305507-52305526 | Msa0687460:intron | 50.0% | |
| ATATCTGTCACACCCAGGGT+TGG | - | chr4_4:52305814-52305833 | None:intergenic | 50.0% | |
| AACCCTGGGTGTGACAGATA+TGG | + | chr4_4:52305813-52305832 | Msa0687460:intron | 50.0% | |
| ACCCTGGGTGTGACAGATAT+GGG | + | chr4_4:52305814-52305833 | Msa0687460:intron | 50.0% | |
| ACCCATATCTGTCACACCCA+GGG | - | chr4_4:52305818-52305837 | None:intergenic | 50.0% | |
| !!! | TCACCCCTTGAGCTAGCTTT+TGG | + | chr4_4:52305898-52305917 | Msa0687460:intron | 50.0% |
| !!! | CACCCCTTGAGCTAGCTTTT+GGG | + | chr4_4:52305899-52305918 | Msa0687460:intron | 50.0% |
| !!! | ACCCCTTGAGCTAGCTTTTG+GGG | + | chr4_4:52305900-52305919 | Msa0687460:intron | 50.0% |
| ACCCCAAAAGCTAGCTCAAG+GGG | - | chr4_4:52305904-52305923 | None:intergenic | 50.0% | |
| CAACCCCAAAAGCTAGCTCA+AGG | - | chr4_4:52305906-52305925 | None:intergenic | 50.0% | |
| GCATCAGAGAGGATCATTCC+TGG | + | chr4_4:52306032-52306051 | Msa0687460:CDS | 50.0% | |
| TGATGATACAGATACGGCGG+TGG | + | chr4_4:52306132-52306151 | Msa0687460:intron | 50.0% | |
| TTGGCTTCTTCCCTGTCACT+GGG | + | chr4_4:52306235-52306254 | Msa0687460:intron | 50.0% | |
| !!! | CAGGTGCTTGCTTTTGAAGC+TGG | + | chr4_4:52306290-52306309 | Msa0687460:intron | 50.0% |
| AACTCGTGTCTCTTGCTTCC+AGG | + | chr4_4:52306544-52306563 | Msa0687460:intron | 50.0% | |
| CCTGTGATAGCCGATGCTAA+AGG | - | chr4_4:52306798-52306817 | None:intergenic | 50.0% | |
| !! | CCTTTAGCATCGGCTATCAC+AGG | + | chr4_4:52306795-52306814 | Msa0687460:CDS | 50.0% |
| GGTTTGAATGCTATGGGCGT+TGG | + | chr4_4:52306840-52306859 | Msa0687460:CDS | 50.0% | |
| GGTGCTTAATGCTGCTCCTT+GGG | - | chr4_4:52306900-52306919 | None:intergenic | 50.0% | |
| TGGTGCTTAATGCTGCTCCT+TGG | - | chr4_4:52306901-52306920 | None:intergenic | 50.0% | |
| ! | GTCTAAGTTGGGGTGAGACT+TGG | - | chr4_4:52306921-52306940 | None:intergenic | 50.0% |
| AGTTCACTTGCGCGTGAGAC+GGG | - | chr4_4:52302019-52302038 | None:intergenic | 55.0% | |
| CAGTTCACTTGCGCGTGAGA+CGG | - | chr4_4:52302020-52302039 | None:intergenic | 55.0% | |
| ! | GTTTGCCGATGTGAGCACTG+TGG | + | chr4_4:52303301-52303320 | Msa0687460:CDS | 55.0% |
| !! | GGTTCTTGGTGCCAAGTCCA+AGG | + | chr4_4:52303322-52303341 | Msa0687460:CDS | 55.0% |
| !! | TCTTGGTGCCAAGTCCAAGG+TGG | + | chr4_4:52303325-52303344 | Msa0687460:CDS | 55.0% |
| !! | CTTGGTGCCAAGTCCAAGGT+GGG | + | chr4_4:52303326-52303345 | Msa0687460:CDS | 55.0% |
| CTGGTCCATTGGCAAGAGAG+TGG | - | chr4_4:52305407-52305426 | None:intergenic | 55.0% | |
| CTCTCTTGCCAATGGACCAG+AGG | + | chr4_4:52305407-52305426 | Msa0687460:CDS | 55.0% | |
| GGATGTCTCCAGCAGTGGTT+TGG | - | chr4_4:52305518-52305537 | None:intergenic | 55.0% | |
| AACCACTGCTGGAGACATCC+CGG | + | chr4_4:52305518-52305537 | Msa0687460:CDS | 55.0% | |
| ACACCCTACATGTCCAACCC+TGG | + | chr4_4:52305798-52305817 | Msa0687460:intron | 55.0% | |
| CACCCTACATGTCCAACCCT+GGG | + | chr4_4:52305799-52305818 | Msa0687460:intron | 55.0% | |
| CACCCAGGGTTGGACATGTA+GGG | - | chr4_4:52305804-52305823 | None:intergenic | 55.0% | |
| ACACCCAGGGTTGGACATGT+AGG | - | chr4_4:52305805-52305824 | None:intergenic | 55.0% | |
| GACCCATATCTGTCACACCC+AGG | - | chr4_4:52305819-52305838 | None:intergenic | 55.0% | |
| CAAGGGGTGACGATTGCTCA+AGG | - | chr4_4:52305888-52305907 | None:intergenic | 55.0% | |
| ! | GTTGGCTTCTTCCCTGTCAC+TGG | + | chr4_4:52306234-52306253 | Msa0687460:intron | 55.0% |
| ! | GCACGACTTCTTAGTGGACC+TGG | - | chr4_4:52306565-52306584 | None:intergenic | 55.0% |
| CCACGATCCCACCTTGGACT+TGG | - | chr4_4:52303336-52303355 | None:intergenic | 60.0% | |
| CCAAGTCCAAGGTGGGATCG+TGG | + | chr4_4:52303333-52303352 | Msa0687460:CDS | 60.0% | |
| CATCCGTGCAGCCCTTCCAA+CGG | + | chr4_4:52303384-52303403 | Msa0687460:CDS | 60.0% | |
| ! | GGGGGACCAAGGTACTAGTC+TGG | + | chr4_4:52304739-52304758 | Msa0687460:intron | 60.0% |
| TTCCGGGATGTCTCCAGCAG+TGG | - | chr4_4:52305523-52305542 | None:intergenic | 60.0% | |
| CTGCTGGAGACATCCCGGAA+AGG | + | chr4_4:52305523-52305542 | Msa0687460:CDS | 60.0% | |
| GCTCCGTTGGAAGGGCTGCA+CGG | - | chr4_4:52303390-52303409 | None:intergenic | 65.0% | |
| CGGCTGCTGCTGCGTACGAG+AGG | - | chr4_4:52302090-52302109 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 52301978 | 52307243 | 52301978 | ID=Msa0687460;Name=Msa0687460 |
| chr4_4 | mRNA | 52301978 | 52307243 | 52301978 | ID=Msa0687460-mRNA-1;Parent=Msa0687460;Name=Msa0687460-mRNA-1;_AED=0.08;_eAED=0.08;_QI=226|1|1|1|0.84|0.71|14|309|392 |
| chr4_4 | exon | 52301978 | 52302172 | 52301978 | ID=Msa0687460-mRNA-1:exon:13687;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52303202 | 52303509 | 52303202 | ID=Msa0687460-mRNA-1:exon:13688;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52303922 | 52304031 | 52303922 | ID=Msa0687460-mRNA-1:exon:13689;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52304191 | 52304246 | 52304191 | ID=Msa0687460-mRNA-1:exon:13690;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52304332 | 52304416 | 52304332 | ID=Msa0687460-mRNA-1:exon:13691;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52304524 | 52304571 | 52304524 | ID=Msa0687460-mRNA-1:exon:13692;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52305354 | 52305428 | 52305354 | ID=Msa0687460-mRNA-1:exon:13693;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52305511 | 52305622 | 52305511 | ID=Msa0687460-mRNA-1:exon:13694;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52306003 | 52306054 | 52306003 | ID=Msa0687460-mRNA-1:exon:13695;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52306143 | 52306194 | 52306143 | ID=Msa0687460-mRNA-1:exon:13696;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52306293 | 52306350 | 52306293 | ID=Msa0687460-mRNA-1:exon:13697;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52306566 | 52306664 | 52306566 | ID=Msa0687460-mRNA-1:exon:13698;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52306760 | 52306978 | 52306760 | ID=Msa0687460-mRNA-1:exon:13699;Parent=Msa0687460-mRNA-1 |
| chr4_4 | exon | 52306999 | 52307243 | 52306999 | ID=Msa0687460-mRNA-1:exon:13700;Parent=Msa0687460-mRNA-1 |
| chr4_4 | five_prime_UTR | 52301978 | 52302172 | 52301978 | ID=Msa0687460-mRNA-1:five_prime_utr;Parent=Msa0687460-mRNA-1 |
| chr4_4 | five_prime_UTR | 52303202 | 52303232 | 52303202 | ID=Msa0687460-mRNA-1:five_prime_utr;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52303233 | 52303509 | 52303233 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52303922 | 52304031 | 52303922 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52304191 | 52304246 | 52304191 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52304332 | 52304416 | 52304332 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52304524 | 52304571 | 52304524 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52305354 | 52305428 | 52305354 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52305511 | 52305622 | 52305511 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52306003 | 52306054 | 52306003 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52306143 | 52306194 | 52306143 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52306293 | 52306350 | 52306293 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52306566 | 52306664 | 52306566 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | CDS | 52306760 | 52306914 | 52306760 | ID=Msa0687460-mRNA-1:cds;Parent=Msa0687460-mRNA-1 |
| chr4_4 | three_prime_UTR | 52306915 | 52306978 | 52306915 | ID=Msa0687460-mRNA-1:three_prime_utr;Parent=Msa0687460-mRNA-1 |
| chr4_4 | three_prime_UTR | 52306999 | 52307243 | 52306999 | ID=Msa0687460-mRNA-1:three_prime_utr;Parent=Msa0687460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
